| """Validate manifest coverage, labels, folds, HDF5 schema, and file checksums.""" |
| import csv |
| import hashlib |
| from collections import Counter |
| from pathlib import Path |
|
|
| import h5py |
|
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|
|
| def main(): |
| root = Path(__file__).resolve().parents[1] |
| with (root / 'manifest.csv').open(newline='') as f: |
| rows = list(csv.DictReader(f)) |
| paths = [r['path'] for r in rows] |
| assert len(rows) == 38180 and len(set(paths)) == len(rows) |
| assert len({r['sample_id'] for r in rows}) == len(rows) |
| assert set(paths) == {str(p.relative_to(root)) for p in (root / 'data').rglob('*.h5')} |
| counts = Counter() |
| for row in rows: |
| path = Path(row['path']) |
| assert not path.is_absolute() and '..' not in path.parts |
| assert row['label'] == {'negative': '0', 'positive': '1'}[row['label_name']] |
| assert row['label_name'] in path.name |
| counts[row['source'], row['split'], row['fold'], row['label_name']] += 1 |
| filename = root / path |
| assert hashlib.sha256(filename.read_bytes()).hexdigest() == row['sha256'], path |
| with h5py.File(filename) as f: |
| d = f[row['h5_key']] |
| assert d.shape == tuple(int(row[k]) for k in ('height', 'width', 'bins')), path |
| assert str(d.dtype) == row['dtype'], path |
| assert Counter(r['split'] for r in rows) == { |
| 'train': 26600, 'validation': 5700, 'test': 5700, 'unassigned': 180} |
| for i in range(1, 10): |
| for label in ('negative', 'positive'): |
| assert counts['experimental', 'unassigned', f'fold_{i}', label] == 10 |
| for split in ('train', 'validation', 'test'): |
| with (root / f'metadata/synthetic_{split}.csv').open(newline='') as f: |
| assert list(csv.DictReader(f)) == [r for r in rows if r['split'] == split] |
| expected = [r for r in rows if r['source'] == 'experimental'] |
| for name in ('metadata/experimental.csv', 'data/experiment_data/manifest.csv'): |
| with (root / name).open(newline='') as f: |
| assert list(csv.DictReader(f)) == expected |
| assert (root / 'SHA256SUMS').read_text() == ''.join( |
| f"{r['sha256']} {r['path']}\n" for r in rows) |
| print('PASS: 38,180 files, hashes, schemas, portable paths, split manifests, and nine balanced folds') |
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|
|
|
| if __name__ == '__main__': |
| main() |
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|
