spacr-example-annotate / settings /annotate_settings.csv
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Label by rule: infected (2) vs uninfected (1); hand annotations removed
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Key,Value
annotation_column,infected
channels,"r,g,b"
crop_source,png
cv_group_by,well
edge_image,False
edge_thickness,0.1
edge_transparency,100
image_size,224
image_type,cell_png
img_size,200
measurement,
normalize,False
normalize_channels,
object_size,"(0, 0)"
outline,
outline_sigma,4
outline_threshold_factor,1.25
percentiles,"[2, 98]"
queue_by_uncertainty,False
queue_diversity,well
queue_limit,0
queue_measure,entropy
src,<dataset>/measurements.db
threshold,
threshold_direction,higher