spacr-example-annotate / settings /classify_settings.csv
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Label by rule: infected (2) vs uninfected (1); hand annotations removed
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Key,Value
amsgrad,True
annotation_column,infected
augment,False
batch_size,32
class_balance,none
class_folder_names,"['nc', 'pc']"
classes,"['1', '2']"
classifier_evaluation,True
crop_source,auto
cross_validation_enabled,False
cross_validation_folds,0
custom_model_path,
cv_group_by,well
dropout_rate,0.1
epochs,10
evaluation_bins,10
evaluation_calibration,temperature
evaluation_fail_on_leakage,True
gradient_accumulation,True
gradient_accumulation_steps,4
holdout_plate,
image_size,224
init_weights,True
intermedeate_save,True
leakage_audit_train_test,True
leakage_hash_content,True
leakage_require_identity,True
learning_rate,0.001
loss_type,focal_loss
max_failure_rate,
mixed_precision,False
model_type,maxvit_t
n_jobs,30
nested_cv_inner_folds,0
normalize,True
optimizer_type,adamw
pin_memory,False
plot,True
resume_checkpoint,
schedule,cosine
src,<dataset>
strict_errors,
tensorboard,True
test,False
train,True
train_channels,"['r', 'g', 'b']"
train_mode,erm
use_checkpoint,True
val_split,0.1
verbose,False
weight_decay,1e-05