Sep 21 17:59 Publish Supplementary Table S8 reference genome combination benchmark tables and confusion matrices 16:20 Publish Note 4 summary tables, confusion matrices, and expected benchmark metrics 14:58 Update provenance and README to record all 43 RNA-PDX mixture gradient cells 11:29 Record the RNA gradient fixture digests 09:07 Remove upload probe 09:04 Upload provenance/__probe__.txt with huggingface_hub Sep 14 05:29 Update provenance checksums.sha256 for the Note 4 BS gradient 05:29 Update provenance files.jsonl for the Note 4 BS gradient 01:40 data: record mixture and Gate D checksums 01:37 data: record mixture and Gate D provenance Sep 13 08:25 data: update checksums with Gate C fixtures 08:25 data: update provenance manifest with Gate C fixtures Sep 12 17:15 data: add pairbam Gate B checksums Publish checksum entries for the pairbam Gate B BAM and BAI fixture paths. 17:15 data: record pairbam Gate B provenance Record the pairbam-scoped BAM and BAI fixture ownership, derivation, counts, sizes, and checksums. 15:10 data: add BAM Gate A checksums Publish SHA-256 validation entries for the Gate A BAM fixture and index. 15:10 data: record BAM Gate A provenance Publish the validated BAM and BAI derivation, count, ownership, source, size, and checksum records. 12:08 data: add RNA-PDX fixture checksums Publish SHA-256 verification entries for the first fastqcx fixture pair. 12:08 data: record RNA-PDX fixture provenance Publish per-file accession, derivation, count, source commit, size, and SHA-256 provenance for the first fastqcx fixture pair. 12:06 docs: establish reproducibility provenance contract Create the public OTTER reproducibility dataset with its data card and per-file provenance schema. Fixture payloads will follow checksum and source validation. 
