sentence1 stringlengths 52 3.87M | sentence2 stringlengths 1 47.2k | label stringclasses 1
value |
|---|---|---|
def load_data(self):
"""
Loads data from MRMS GRIB2 files and handles compression duties if files are compressed.
"""
data = []
loaded_dates = []
loaded_indices = []
for t, timestamp in enumerate(self.all_dates):
date_str = timestamp.date().strftime("%... | Loads data from MRMS GRIB2 files and handles compression duties if files are compressed. | entailment |
def interpolate_grid(self, in_lon, in_lat):
"""
Interpolates MRMS data to a different grid using cubic bivariate splines
"""
out_data = np.zeros((self.data.shape[0], in_lon.shape[0], in_lon.shape[1]))
for d in range(self.data.shape[0]):
print("Loading ", d, self.varia... | Interpolates MRMS data to a different grid using cubic bivariate splines | entailment |
def max_neighbor(self, in_lon, in_lat, radius=0.05):
"""
Finds the largest value within a given radius of a point on the interpolated grid.
Args:
in_lon: 2D array of longitude values
in_lat: 2D array of latitude values
radius: radius of influence for largest ... | Finds the largest value within a given radius of a point on the interpolated grid.
Args:
in_lon: 2D array of longitude values
in_lat: 2D array of latitude values
radius: radius of influence for largest neighbor search in degrees
Returns:
Array of interpo... | entailment |
def interpolate_to_netcdf(self, in_lon, in_lat, out_path, date_unit="seconds since 1970-01-01T00:00",
interp_type="spline"):
"""
Calls the interpolation function and then saves the MRMS data to a netCDF file. It will also create
separate directories for each variab... | Calls the interpolation function and then saves the MRMS data to a netCDF file. It will also create
separate directories for each variable if they are not already available. | entailment |
def get_data_generator_by_id(hardware_source_id, sync=True):
"""
Return a generator for data.
:param bool sync: whether to wait for current frame to finish then collect next frame
NOTE: a new ndarray is created for each call.
"""
hardware_source = HardwareSourceManager().get_hardwa... | Return a generator for data.
:param bool sync: whether to wait for current frame to finish then collect next frame
NOTE: a new ndarray is created for each call. | entailment |
def parse_hardware_aliases_config_file(config_path):
"""
Parse config file for aliases and automatically register them.
Returns True if alias file was found and parsed (successfully or unsuccessfully).
Returns False if alias file was not found.
Config file is a standard .ini file ... | Parse config file for aliases and automatically register them.
Returns True if alias file was found and parsed (successfully or unsuccessfully).
Returns False if alias file was not found.
Config file is a standard .ini file with a section | entailment |
def make_instrument_alias(self, instrument_id, alias_instrument_id, display_name):
""" Configure an alias.
Callers can use the alias to refer to the instrument or hardware source.
The alias should be lowercase, no spaces. The display name may be used to display alias to
the ... | Configure an alias.
Callers can use the alias to refer to the instrument or hardware source.
The alias should be lowercase, no spaces. The display name may be used to display alias to
the user. Neither the original instrument or hardware source id and the alias id should ever
... | entailment |
def update(self, data_and_metadata: DataAndMetadata.DataAndMetadata, state: str, sub_area, view_id) -> None:
"""Called from hardware source when new data arrives."""
self.__state = state
self.__sub_area = sub_area
hardware_source_id = self.__hardware_source.hardware_source_id
ch... | Called from hardware source when new data arrives. | entailment |
def start(self):
"""Called from hardware source when data starts streaming."""
old_start_count = self.__start_count
self.__start_count += 1
if old_start_count == 0:
self.data_channel_start_event.fire() | Called from hardware source when data starts streaming. | entailment |
def connect_data_item_reference(self, data_item_reference):
"""Connect to the data item reference, creating a crop graphic if necessary.
If the data item reference does not yet have an associated data item, add a
listener and wait for the data item to be set, then connect.
"""
d... | Connect to the data item reference, creating a crop graphic if necessary.
If the data item reference does not yet have an associated data item, add a
listener and wait for the data item to be set, then connect. | entailment |
def grab_earliest(self, timeout: float=None) -> typing.List[DataAndMetadata.DataAndMetadata]:
"""Grab the earliest data from the buffer, blocking until one is available."""
timeout = timeout if timeout is not None else 10.0
with self.__buffer_lock:
if len(self.__buffer) == 0:
... | Grab the earliest data from the buffer, blocking until one is available. | entailment |
def grab_next(self, timeout: float=None) -> typing.List[DataAndMetadata.DataAndMetadata]:
"""Grab the next data to finish from the buffer, blocking until one is available."""
with self.__buffer_lock:
self.__buffer = list()
return self.grab_latest(timeout) | Grab the next data to finish from the buffer, blocking until one is available. | entailment |
def grab_following(self, timeout: float=None) -> typing.List[DataAndMetadata.DataAndMetadata]:
"""Grab the next data to start from the buffer, blocking until one is available."""
self.grab_next(timeout)
return self.grab_next(timeout) | Grab the next data to start from the buffer, blocking until one is available. | entailment |
def pause(self) -> None:
"""Pause recording.
Thread safe and UI safe."""
with self.__state_lock:
if self.__state == DataChannelBuffer.State.started:
self.__state = DataChannelBuffer.State.paused | Pause recording.
Thread safe and UI safe. | entailment |
def resume(self) -> None:
"""Resume recording after pause.
Thread safe and UI safe."""
with self.__state_lock:
if self.__state == DataChannelBuffer.State.paused:
self.__state = DataChannelBuffer.State.started | Resume recording after pause.
Thread safe and UI safe. | entailment |
def nlargest(n, mapping):
"""
Takes a mapping and returns the n keys associated with the largest values
in descending order. If the mapping has fewer than n items, all its keys
are returned.
Equivalent to:
``next(zip(*heapq.nlargest(mapping.items(), key=lambda x: x[1])))``
Returns
... | Takes a mapping and returns the n keys associated with the largest values
in descending order. If the mapping has fewer than n items, all its keys
are returned.
Equivalent to:
``next(zip(*heapq.nlargest(mapping.items(), key=lambda x: x[1])))``
Returns
-------
list of up to n keys from ... | entailment |
def fromkeys(cls, iterable, value, **kwargs):
"""
Return a new pqict mapping keys from an iterable to the same value.
"""
return cls(((k, value) for k in iterable), **kwargs) | Return a new pqict mapping keys from an iterable to the same value. | entailment |
def copy(self):
"""
Return a shallow copy of a pqdict.
"""
return self.__class__(self, key=self._keyfn, precedes=self._precedes) | Return a shallow copy of a pqdict. | entailment |
def pop(self, key=__marker, default=__marker):
"""
If ``key`` is in the pqdict, remove it and return its priority value,
else return ``default``. If ``default`` is not provided and ``key`` is
not in the pqdict, raise a ``KeyError``.
If ``key`` is not provided, remove the top ite... | If ``key`` is in the pqdict, remove it and return its priority value,
else return ``default``. If ``default`` is not provided and ``key`` is
not in the pqdict, raise a ``KeyError``.
If ``key`` is not provided, remove the top item and return its key, or
raise ``KeyError`` if the pqdict i... | entailment |
def popitem(self):
"""
Remove and return the item with highest priority. Raises ``KeyError``
if pqdict is empty.
"""
heap = self._heap
position = self._position
try:
end = heap.pop(-1)
except IndexError:
raise KeyError('pqdict is ... | Remove and return the item with highest priority. Raises ``KeyError``
if pqdict is empty. | entailment |
def topitem(self):
"""
Return the item with highest priority. Raises ``KeyError`` if pqdict is
empty.
"""
try:
node = self._heap[0]
except IndexError:
raise KeyError('pqdict is empty')
return node.key, node.value | Return the item with highest priority. Raises ``KeyError`` if pqdict is
empty. | entailment |
def additem(self, key, value):
"""
Add a new item. Raises ``KeyError`` if key is already in the pqdict.
"""
if key in self._position:
raise KeyError('%s is already in the queue' % repr(key))
self[key] = value | Add a new item. Raises ``KeyError`` if key is already in the pqdict. | entailment |
def pushpopitem(self, key, value, node_factory=_Node):
"""
Equivalent to inserting a new item followed by removing the top
priority item, but faster. Raises ``KeyError`` if the new key is
already in the pqdict.
"""
heap = self._heap
position = self._position
... | Equivalent to inserting a new item followed by removing the top
priority item, but faster. Raises ``KeyError`` if the new key is
already in the pqdict. | entailment |
def updateitem(self, key, new_val):
"""
Update the priority value of an existing item. Raises ``KeyError`` if
key is not in the pqdict.
"""
if key not in self._position:
raise KeyError(key)
self[key] = new_val | Update the priority value of an existing item. Raises ``KeyError`` if
key is not in the pqdict. | entailment |
def replace_key(self, key, new_key):
"""
Replace the key of an existing heap node in place. Raises ``KeyError``
if the key to replace does not exist or if the new key is already in
the pqdict.
"""
heap = self._heap
position = self._position
if new_key in ... | Replace the key of an existing heap node in place. Raises ``KeyError``
if the key to replace does not exist or if the new key is already in
the pqdict. | entailment |
def swap_priority(self, key1, key2):
"""
Fast way to swap the priority level of two items in the pqdict. Raises
``KeyError`` if either key does not exist.
"""
heap = self._heap
position = self._position
if key1 not in self or key2 not in self:
raise K... | Fast way to swap the priority level of two items in the pqdict. Raises
``KeyError`` if either key does not exist. | entailment |
def heapify(self, key=__marker):
"""
Repair a broken heap. If the state of an item's priority value changes
you can re-sort the relevant item only by providing ``key``.
"""
if key is self.__marker:
n = len(self._heap)
for pos in reversed(range(n//2)):
... | Repair a broken heap. If the state of an item's priority value changes
you can re-sort the relevant item only by providing ``key``. | entailment |
def package_has_version_file(package_name):
""" Check to make sure _version.py is contained in the package """
version_file_path = helpers.package_file_path('_version.py', package_name)
return os.path.isfile(version_file_path) | Check to make sure _version.py is contained in the package | entailment |
def get_project_name():
""" Grab the project name out of setup.py """
setup_py_content = helpers.get_file_content('setup.py')
ret = helpers.value_of_named_argument_in_function(
'name', 'setup', setup_py_content, resolve_varname=True
)
if ret and ret[0] == ret[-1] in ('"', "'"):
ret =... | Grab the project name out of setup.py | entailment |
def get_version(package_name, ignore_cache=False):
""" Get the version which is currently configured by the package """
if ignore_cache:
with microcache.temporarily_disabled():
found = helpers.regex_in_package_file(
VERSION_SET_REGEX, '_version.py', package_name, return_match... | Get the version which is currently configured by the package | entailment |
def set_version(package_name, version_str):
""" Set the version in _version.py to version_str """
current_version = get_version(package_name)
version_file_path = helpers.package_file_path('_version.py', package_name)
version_file_content = helpers.get_file_content(version_file_path)
version_file_con... | Set the version in _version.py to version_str | entailment |
def version_is_valid(version_str):
""" Check to see if the version specified is a valid as far as pkg_resources is concerned
>>> version_is_valid('blah')
False
>>> version_is_valid('1.2.3')
True
"""
try:
packaging.version.Version(version_str)
except packaging.version.InvalidVers... | Check to see if the version specified is a valid as far as pkg_resources is concerned
>>> version_is_valid('blah')
False
>>> version_is_valid('1.2.3')
True | entailment |
def _get_uploaded_versions_warehouse(project_name, index_url, requests_verify=True):
""" Query the pypi index at index_url using warehouse api to find all of the "releases" """
url = '/'.join((index_url, project_name, 'json'))
response = requests.get(url, verify=requests_verify)
if response.status_code ... | Query the pypi index at index_url using warehouse api to find all of the "releases" | entailment |
def _get_uploaded_versions_pypicloud(project_name, index_url, requests_verify=True):
""" Query the pypi index at index_url using pypicloud api to find all versions """
api_url = index_url
for suffix in ('/pypi', '/pypi/', '/simple', '/simple/'):
if api_url.endswith(suffix):
api_url = api... | Query the pypi index at index_url using pypicloud api to find all versions | entailment |
def version_already_uploaded(project_name, version_str, index_url, requests_verify=True):
""" Check to see if the version specified has already been uploaded to the configured index
"""
all_versions = _get_uploaded_versions(project_name, index_url, requests_verify)
return version_str in all_versions | Check to see if the version specified has already been uploaded to the configured index | entailment |
def convert_readme_to_rst():
""" Attempt to convert a README.md file into README.rst """
project_files = os.listdir('.')
for filename in project_files:
if filename.lower() == 'readme':
raise ProjectError(
'found {} in project directory...'.format(filename) +
... | Attempt to convert a README.md file into README.rst | entailment |
def get_packaged_files(package_name):
""" Collect relative paths to all files which have already been packaged """
if not os.path.isdir('dist'):
return []
return [os.path.join('dist', filename) for filename in os.listdir('dist')] | Collect relative paths to all files which have already been packaged | entailment |
def multiple_packaged_versions(package_name):
""" Look through built package directory and see if there are multiple versions there """
dist_files = os.listdir('dist')
versions = set()
for filename in dist_files:
version = funcy.re_find(r'{}-(.+).tar.gz'.format(package_name), filename)
i... | Look through built package directory and see if there are multiple versions there | entailment |
def period_neighborhood_probability(self, radius, smoothing, threshold, stride,start_time,end_time):
"""
Calculate the neighborhood probability over the full period of the forecast
Args:
radius: circular radius from each point in km
smoothing: width of Gaussian smoother ... | Calculate the neighborhood probability over the full period of the forecast
Args:
radius: circular radius from each point in km
smoothing: width of Gaussian smoother in km
threshold: intensity of exceedance
stride: number of grid points to skip for reduced neighb... | entailment |
def analisar(retorno):
"""Constrói uma :class:`RespostaSAT` ou especialização dependendo da
função SAT encontrada na sessão consultada.
:param unicode retorno: Retorno da função ``ConsultarNumeroSessao``.
"""
if '|' not in retorno:
raise ErroRespostaSATInvalida('Resp... | Constrói uma :class:`RespostaSAT` ou especialização dependendo da
função SAT encontrada na sessão consultada.
:param unicode retorno: Retorno da função ``ConsultarNumeroSessao``. | entailment |
def analisar_retorno(retorno,
classe_resposta=RespostaSAT, campos=RespostaSAT.CAMPOS,
campos_alternativos=[], funcao=None, manter_verbatim=True):
"""Analisa o retorno (supostamente um retorno de uma função do SAT) conforme
o padrão e campos esperados. O retorno deverá possuir dados separados ent... | Analisa o retorno (supostamente um retorno de uma função do SAT) conforme
o padrão e campos esperados. O retorno deverá possuir dados separados entre
si através de pipes e o número de campos deverá coincidir com os campos
especificados.
O campos devem ser especificados como uma tupla onde cada elemento... | entailment |
def comunicar_certificado_icpbrasil(retorno):
"""Constrói uma :class:`RespostaSAT` para o retorno (unicode) da função
:meth:`~satcfe.base.FuncoesSAT.comunicar_certificado_icpbrasil`.
"""
resposta = analisar_retorno(forcar_unicode(retorno),
funcao='ComunicarCertificadoICPB... | Constrói uma :class:`RespostaSAT` para o retorno (unicode) da função
:meth:`~satcfe.base.FuncoesSAT.comunicar_certificado_icpbrasil`. | entailment |
def consultar_sat(retorno):
"""Constrói uma :class:`RespostaSAT` para o retorno (unicode) da função
:meth:`~satcfe.base.FuncoesSAT.consultar_sat`.
"""
resposta = analisar_retorno(forcar_unicode(retorno),
funcao='ConsultarSAT')
if resposta.EEEEE not in ('08000',):
... | Constrói uma :class:`RespostaSAT` para o retorno (unicode) da função
:meth:`~satcfe.base.FuncoesSAT.consultar_sat`. | entailment |
def configurar_interface_de_rede(retorno):
"""Constrói uma :class:`RespostaSAT` para o retorno (unicode) da função
:meth:`~satcfe.base.FuncoesSAT.configurar_interface_de_rede`.
"""
resposta = analisar_retorno(forcar_unicode(retorno),
funcao='ConfigurarInterfaceDeRede')
... | Constrói uma :class:`RespostaSAT` para o retorno (unicode) da função
:meth:`~satcfe.base.FuncoesSAT.configurar_interface_de_rede`. | entailment |
def associar_assinatura(retorno):
"""Constrói uma :class:`RespostaSAT` para o retorno (unicode) da função
:meth:`~satcfe.base.FuncoesSAT.associar_assinatura`.
"""
resposta = analisar_retorno(forcar_unicode(retorno),
funcao='AssociarAssinatura')
if resposta.EEEEE n... | Constrói uma :class:`RespostaSAT` para o retorno (unicode) da função
:meth:`~satcfe.base.FuncoesSAT.associar_assinatura`. | entailment |
def atualizar_software_sat(retorno):
"""Constrói uma :class:`RespostaSAT` para o retorno (unicode) da função
:meth:`~satcfe.base.FuncoesSAT.atualizar_software_sat`.
"""
resposta = analisar_retorno(forcar_unicode(retorno),
funcao='AtualizarSoftwareSAT')
if resposta... | Constrói uma :class:`RespostaSAT` para o retorno (unicode) da função
:meth:`~satcfe.base.FuncoesSAT.atualizar_software_sat`. | entailment |
def bloquear_sat(retorno):
"""Constrói uma :class:`RespostaSAT` para o retorno (unicode) da função
:meth:`~satcfe.base.FuncoesSAT.bloquear_sat`.
"""
resposta = analisar_retorno(forcar_unicode(retorno),
funcao='BloquearSAT')
if resposta.EEEEE not in ('16000',):
... | Constrói uma :class:`RespostaSAT` para o retorno (unicode) da função
:meth:`~satcfe.base.FuncoesSAT.bloquear_sat`. | entailment |
def desbloquear_sat(retorno):
"""Constrói uma :class:`RespostaSAT` para o retorno (unicode) da função
:meth:`~satcfe.base.FuncoesSAT.desbloquear_sat`.
"""
resposta = analisar_retorno(forcar_unicode(retorno),
funcao='DesbloquearSAT')
if resposta.EEEEE not in ('1700... | Constrói uma :class:`RespostaSAT` para o retorno (unicode) da função
:meth:`~satcfe.base.FuncoesSAT.desbloquear_sat`. | entailment |
def trocar_codigo_de_ativacao(retorno):
"""Constrói uma :class:`RespostaSAT` para o retorno (unicode) da função
:meth:`~satcfe.base.FuncoesSAT.trocar_codigo_de_ativacao`.
"""
resposta = analisar_retorno(forcar_unicode(retorno),
funcao='TrocarCodigoDeAtivacao')
if ... | Constrói uma :class:`RespostaSAT` para o retorno (unicode) da função
:meth:`~satcfe.base.FuncoesSAT.trocar_codigo_de_ativacao`. | entailment |
def load_data(self):
"""
Load the specified variable from the ensemble files, then close the files.
"""
if self.ensemble_name.upper() == "SSEF":
if self.variable[0:2] == "rh":
pressure_level = self.variable[2:]
relh_vars = ["sph", "tmp"]
... | Load the specified variable from the ensemble files, then close the files. | entailment |
def load_map_info(self, map_file):
"""
Load map projection information and create latitude, longitude, x, y, i, and j grids for the projection.
Args:
map_file: File specifying the projection information.
"""
if self.ensemble_name.upper() == "SSEF":
proj_d... | Load map projection information and create latitude, longitude, x, y, i, and j grids for the projection.
Args:
map_file: File specifying the projection information. | entailment |
def read_geojson(filename):
"""
Reads a geojson file containing an STObject and initializes a new STObject from the information in the file.
Args:
filename: Name of the geojson file
Returns:
an STObject
"""
json_file = open(filename)
data = json.load(json_file)
json_fil... | Reads a geojson file containing an STObject and initializes a new STObject from the information in the file.
Args:
filename: Name of the geojson file
Returns:
an STObject | entailment |
def center_of_mass(self, time):
"""
Calculate the center of mass at a given timestep.
Args:
time: Time at which the center of mass calculation is performed
Returns:
The x- and y-coordinates of the center of mass.
"""
if self.start_time <= time <=... | Calculate the center of mass at a given timestep.
Args:
time: Time at which the center of mass calculation is performed
Returns:
The x- and y-coordinates of the center of mass. | entailment |
def trajectory(self):
"""
Calculates the center of mass for each time step and outputs an array
Returns:
"""
traj = np.zeros((2, self.times.size))
for t, time in enumerate(self.times):
traj[:, t] = self.center_of_mass(time)
return traj | Calculates the center of mass for each time step and outputs an array
Returns: | entailment |
def get_corner(self, time):
"""
Gets the corner array indices of the STObject at a given time that corresponds
to the upper left corner of the bounding box for the STObject.
Args:
time: time at which the corner is being extracted.
Returns:
corner inde... | Gets the corner array indices of the STObject at a given time that corresponds
to the upper left corner of the bounding box for the STObject.
Args:
time: time at which the corner is being extracted.
Returns:
corner index. | entailment |
def size(self, time):
"""
Gets the size of the object at a given time.
Args:
time: Time value being queried.
Returns:
size of the object in pixels
"""
if self.start_time <= time <= self.end_time:
return self.masks[time - self.start_ti... | Gets the size of the object at a given time.
Args:
time: Time value being queried.
Returns:
size of the object in pixels | entailment |
def max_size(self):
"""
Gets the largest size of the object over all timesteps.
Returns:
Maximum size of the object in pixels
"""
sizes = np.array([m.sum() for m in self.masks])
return sizes.max() | Gets the largest size of the object over all timesteps.
Returns:
Maximum size of the object in pixels | entailment |
def max_intensity(self, time):
"""
Calculate the maximum intensity found at a timestep.
"""
ti = np.where(time == self.times)[0][0]
return self.timesteps[ti].max() | Calculate the maximum intensity found at a timestep. | entailment |
def extend(self, step):
"""
Adds the data from another STObject to this object.
Args:
step: another STObject being added after the current one in time.
"""
self.timesteps.extend(step.timesteps)
self.masks.extend(step.masks)
self.x.extend(step.... | Adds the data from another STObject to this object.
Args:
step: another STObject being added after the current one in time. | entailment |
def boundary_polygon(self, time):
"""
Get coordinates of object boundary in counter-clockwise order
"""
ti = np.where(time == self.times)[0][0]
com_x, com_y = self.center_of_mass(time)
# If at least one point along perimeter of the mask rectangle is unmasked, find_boundar... | Get coordinates of object boundary in counter-clockwise order | entailment |
def estimate_motion(self, time, intensity_grid, max_u, max_v):
"""
Estimate the motion of the object with cross-correlation on the intensity values from the previous time step.
Args:
time: time being evaluated.
intensity_grid: 2D array of intensities used in cross correl... | Estimate the motion of the object with cross-correlation on the intensity values from the previous time step.
Args:
time: time being evaluated.
intensity_grid: 2D array of intensities used in cross correlation.
max_u: Maximum x-component of motion. Used to limit search area.... | entailment |
def count_overlap(self, time, other_object, other_time):
"""
Counts the number of points that overlap between this STObject and another STObject. Used for tracking.
"""
ti = np.where(time == self.times)[0][0]
ma = np.where(self.masks[ti].ravel() == 1)
oti = np.where(other... | Counts the number of points that overlap between this STObject and another STObject. Used for tracking. | entailment |
def extract_attribute_grid(self, model_grid, potential=False, future=False):
"""
Extracts the data from a ModelOutput or ModelGrid object within the bounding box region of the STObject.
Args:
model_grid: A ModelGrid or ModelOutput Object
potential: Extracts from ... | Extracts the data from a ModelOutput or ModelGrid object within the bounding box region of the STObject.
Args:
model_grid: A ModelGrid or ModelOutput Object
potential: Extracts from the time before instead of the same time as the object | entailment |
def extract_attribute_array(self, data_array, var_name):
"""
Extracts data from a 2D array that has the same dimensions as the grid used to identify the object.
Args:
data_array: 2D numpy array
"""
if var_name not in self.attributes.keys():
self.attribut... | Extracts data from a 2D array that has the same dimensions as the grid used to identify the object.
Args:
data_array: 2D numpy array | entailment |
def extract_tendency_grid(self, model_grid):
"""
Extracts the difference in model outputs
Args:
model_grid: ModelOutput or ModelGrid object.
"""
var_name = model_grid.variable + "-tendency"
self.attributes[var_name] = []
timesteps = np.arange(self.st... | Extracts the difference in model outputs
Args:
model_grid: ModelOutput or ModelGrid object. | entailment |
def calc_attribute_statistics(self, statistic_name):
"""
Calculates summary statistics over the domains of each attribute.
Args:
statistic_name (string): numpy statistic, such as mean, std, max, min
Returns:
dict of statistics from each attribute grid.
... | Calculates summary statistics over the domains of each attribute.
Args:
statistic_name (string): numpy statistic, such as mean, std, max, min
Returns:
dict of statistics from each attribute grid. | entailment |
def calc_attribute_statistic(self, attribute, statistic, time):
"""
Calculate statistics based on the values of an attribute. The following statistics are supported:
mean, max, min, std, ptp (range), median, skew (mean - median), and percentile_(percentile value).
Args:
attr... | Calculate statistics based on the values of an attribute. The following statistics are supported:
mean, max, min, std, ptp (range), median, skew (mean - median), and percentile_(percentile value).
Args:
attribute: Attribute extracted from model grid
statistic: Name of statistic ... | entailment |
def calc_timestep_statistic(self, statistic, time):
"""
Calculate statistics from the primary attribute of the StObject.
Args:
statistic: statistic being calculated
time: Timestep being investigated
Returns:
Value of the statistic
"""
... | Calculate statistics from the primary attribute of the StObject.
Args:
statistic: statistic being calculated
time: Timestep being investigated
Returns:
Value of the statistic | entailment |
def calc_shape_statistics(self, stat_names):
"""
Calculate shape statistics using regionprops applied to the object mask.
Args:
stat_names: List of statistics to be extracted from those calculated by regionprops.
Returns:
Dictionary of shape statistics
... | Calculate shape statistics using regionprops applied to the object mask.
Args:
stat_names: List of statistics to be extracted from those calculated by regionprops.
Returns:
Dictionary of shape statistics | entailment |
def calc_shape_step(self, stat_names, time):
"""
Calculate shape statistics for a single time step
Args:
stat_names: List of shape statistics calculated from region props
time: Time being investigated
Returns:
List of shape statistics
"""
... | Calculate shape statistics for a single time step
Args:
stat_names: List of shape statistics calculated from region props
time: Time being investigated
Returns:
List of shape statistics | entailment |
def to_geojson(self, filename, proj, metadata=None):
"""
Output the data in the STObject to a geoJSON file.
Args:
filename: Name of the file
proj: PyProj object for converting the x and y coordinates back to latitude and longitue values.
metadata: Metadata de... | Output the data in the STObject to a geoJSON file.
Args:
filename: Name of the file
proj: PyProj object for converting the x and y coordinates back to latitude and longitue values.
metadata: Metadata describing the object to be included in the top-level properties. | entailment |
def rewrite_properties(self, properties):
"""Set the properties and write to disk."""
with self.__library_storage_lock:
self.__library_storage = properties
self.__write_properties(None) | Set the properties and write to disk. | entailment |
def model(self, v=None):
"Returns the model of node v"
if v is None:
v = self.estopping
hist = self.hist
trace = self.trace(v)
ins = None
if self._base._probability_calibration is not None:
node = hist[-1]
node.normalize()
X... | Returns the model of node v | entailment |
def trace(self, n):
"Restore the position in the history of individual v's nodes"
trace_map = {}
self._trace(n, trace_map)
s = list(trace_map.keys())
s.sort()
return s | Restore the position in the history of individual v's nodes | entailment |
def tournament(self, negative=False):
"""Tournament selection and when negative is True it performs negative
tournament selection"""
if self.generation <= self._random_generations and not negative:
return self.random_selection()
if not self._negative_selection and negative:
... | Tournament selection and when negative is True it performs negative
tournament selection | entailment |
def create_population(self):
"Create the initial population"
base = self._base
if base._share_inputs:
used_inputs_var = SelectNumbers([x for x in range(base.nvar)])
used_inputs_naive = used_inputs_var
if base._pr_variable == 0:
used_inputs_var = Select... | Create the initial population | entailment |
def add(self, v):
"Add an individual to the population"
self.population.append(v)
self._current_popsize += 1
v.position = len(self._hist)
self._hist.append(v)
self.bsf = v
self.estopping = v
self._density += self.get_density(v) | Add an individual to the population | entailment |
def replace(self, v):
"""Replace an individual selected by negative tournament selection with
individual v"""
if self.popsize < self._popsize:
return self.add(v)
k = self.tournament(negative=True)
self.clean(self.population[k])
self.population[k] = v
v... | Replace an individual selected by negative tournament selection with
individual v | entailment |
def make_directory_if_needed(directory_path):
"""
Make the directory path, if needed.
"""
if os.path.exists(directory_path):
if not os.path.isdir(directory_path):
raise OSError("Path is not a directory:", directory_path)
else:
os.makedirs(directory_path) | Make the directory path, if needed. | entailment |
def hatchery():
""" Main entry point for the hatchery program """
args = docopt.docopt(__doc__)
task_list = args['<task>']
if not task_list or 'help' in task_list or args['--help']:
print(__doc__.format(version=_version.__version__, config_files=config.CONFIG_LOCATIONS))
return 0
l... | Main entry point for the hatchery program | entailment |
def call(cmd_args, suppress_output=False):
""" Call an arbitary command and return the exit value, stdout, and stderr as a tuple
Command can be passed in as either a string or iterable
>>> result = call('hatchery', suppress_output=True)
>>> result.exitval
0
>>> result = call(['hatchery', 'notr... | Call an arbitary command and return the exit value, stdout, and stderr as a tuple
Command can be passed in as either a string or iterable
>>> result = call('hatchery', suppress_output=True)
>>> result.exitval
0
>>> result = call(['hatchery', 'notreal'])
>>> result.exitval
1 | entailment |
def setup(cmd_args, suppress_output=False):
""" Call a setup.py command or list of commands
>>> result = setup('--name', suppress_output=True)
>>> result.exitval
0
>>> result = setup('notreal')
>>> result.exitval
1
"""
if not funcy.is_list(cmd_args) and not funcy.is_tuple(cmd_args):... | Call a setup.py command or list of commands
>>> result = setup('--name', suppress_output=True)
>>> result.exitval
0
>>> result = setup('notreal')
>>> result.exitval
1 | entailment |
def load_data(self):
"""
Loads data files and stores the output in the data attribute.
"""
data = []
valid_dates = []
mrms_files = np.array(sorted(os.listdir(self.path + self.variable + "/")))
mrms_file_dates = np.array([m_file.split("_")[-2].split("-")[0]
... | Loads data files and stores the output in the data attribute. | entailment |
def rescale_data(data, data_min, data_max, out_min=0.0, out_max=100.0):
"""
Rescale your input data so that is ranges over integer values, which will perform better in the watershed.
Args:
data: 2D or 3D ndarray being rescaled
data_min: minimum value of input data for scaling purposes
... | Rescale your input data so that is ranges over integer values, which will perform better in the watershed.
Args:
data: 2D or 3D ndarray being rescaled
data_min: minimum value of input data for scaling purposes
data_max: maximum value of input data for scaling purposes
out_min: minim... | entailment |
def label(self, input_grid):
"""
Labels input grid using enhanced watershed algorithm.
Args:
input_grid (numpy.ndarray): Grid to be labeled.
Returns:
Array of labeled pixels
"""
marked = self.find_local_maxima(input_grid)
marked = np.wher... | Labels input grid using enhanced watershed algorithm.
Args:
input_grid (numpy.ndarray): Grid to be labeled.
Returns:
Array of labeled pixels | entailment |
def find_local_maxima(self, input_grid):
"""
Finds the local maxima in the inputGrid and perform region growing to identify objects.
Args:
input_grid: Raw input data.
Returns:
array with labeled objects.
"""
pixels, q_data = self.quantize(input_g... | Finds the local maxima in the inputGrid and perform region growing to identify objects.
Args:
input_grid: Raw input data.
Returns:
array with labeled objects. | entailment |
def set_maximum(self, q_data, marked, center, bin_lower, foothills):
"""
Grow a region at a certain bin level and check if the region has reached the maximum size.
Args:
q_data: Quantized data array
marked: Array marking points that are objects
center: Coordi... | Grow a region at a certain bin level and check if the region has reached the maximum size.
Args:
q_data: Quantized data array
marked: Array marking points that are objects
center: Coordinates of the center pixel of the region being grown
bin_lower: Intensity leve... | entailment |
def remove_foothills(self, q_data, marked, bin_num, bin_lower, centers, foothills):
"""
Mark points determined to be foothills as globbed, so that they are not included in
future searches. Also searches neighboring points to foothill points to determine
if they should also be considered ... | Mark points determined to be foothills as globbed, so that they are not included in
future searches. Also searches neighboring points to foothill points to determine
if they should also be considered foothills.
Args:
q_data: Quantized data
marked: Marked
bin_... | entailment |
def quantize(self, input_grid):
"""
Quantize a grid into discrete steps based on input parameters.
Args:
input_grid: 2-d array of values
Returns:
Dictionary of value pointing to pixel locations, and quantized 2-d array of data
"""
pixels = {}
... | Quantize a grid into discrete steps based on input parameters.
Args:
input_grid: 2-d array of values
Returns:
Dictionary of value pointing to pixel locations, and quantized 2-d array of data | entailment |
def listall(self):
'''
will display all the filenames.
Result can be stored in an array for easy fetching of gistNames
for future purposes.
eg. a = Gist().mygists().listall()
print a[0] #to fetch first gistName
'''
file_name = []
r = requests.get(
'%s/users/%s/gists' % (BASE_URL, self.user),
... | will display all the filenames.
Result can be stored in an array for easy fetching of gistNames
for future purposes.
eg. a = Gist().mygists().listall()
print a[0] #to fetch first gistName | entailment |
def content(self, **args):
'''
Doesn't require manual fetching of gistID of a gist
passing gistName will return the content of gist. In case,
names are ambigious, provide GistID or it will return the contents
of recent ambigious gistname
'''
self.gist_name = ''
if 'name' in args:
self.gist_name = arg... | Doesn't require manual fetching of gistID of a gist
passing gistName will return the content of gist. In case,
names are ambigious, provide GistID or it will return the contents
of recent ambigious gistname | entailment |
def edit(self, **args):
'''
Doesn't require manual fetching of gistID of a gist
passing gistName will return edit the gist
'''
self.gist_name = ''
if 'description' in args:
self.description = args['description']
else:
self.description = ''
if 'name' in args and 'id' in args:
self.gist_name = ... | Doesn't require manual fetching of gistID of a gist
passing gistName will return edit the gist | entailment |
def delete(self, **args):
'''
Delete a gist by gistname/gistID
'''
if 'name' in args:
self.gist_name = args['name']
self.gist_id = self.getMyID(self.gist_name)
elif 'id' in args:
self.gist_id = args['id']
else:
raise Exception('Provide GistName to delete')
url = 'gists'
if self.gist_id:
... | Delete a gist by gistname/gistID | entailment |
def starred(self, **args):
'''
List the authenticated user's starred gists
'''
ids =[]
r = requests.get(
'%s/gists/starred'%BASE_URL,
headers=self.gist.header
)
if 'limit' in args:
limit = args['limit']
else:
limit = len(r.json())
if (r.status_code == 200):
for g in range(0,limit ):
... | List the authenticated user's starred gists | entailment |
def links(self,**args):
'''
Return Gist URL-Link, Clone-Link and Script-Link to embed
'''
if 'name' in args:
self.gist_name = args['name']
self.gist_id = self.getMyID(self.gist_name)
elif 'id' in args:
self.gist_id = args['id']
else:
raise Exception('Gist Name/ID must be provided')
if self.gis... | Return Gist URL-Link, Clone-Link and Script-Link to embed | entailment |
def load_forecasts(self):
"""
Load neighborhood probability forecasts.
"""
run_date_str = self.run_date.strftime("%Y%m%d")
forecast_file = self.forecast_path + "{0}/{1}_{2}_{3}_consensus_{0}.nc".format(run_date_str,
... | Load neighborhood probability forecasts. | entailment |
def load_obs(self, mask_threshold=0.5):
"""
Loads observations and masking grid (if needed).
Args:
mask_threshold: Values greater than the threshold are kept, others are masked.
"""
print("Loading obs ", self.run_date, self.model_name, self.forecast_variable)
... | Loads observations and masking grid (if needed).
Args:
mask_threshold: Values greater than the threshold are kept, others are masked. | entailment |
def load_coordinates(self):
"""
Loads lat-lon coordinates from a netCDF file.
"""
coord_file = Dataset(self.coordinate_file)
if "lon" in coord_file.variables.keys():
self.coordinates["lon"] = coord_file.variables["lon"][:]
self.coordinates["lat"] = coord_f... | Loads lat-lon coordinates from a netCDF file. | entailment |
def evaluate_hourly_forecasts(self):
"""
Calculates ROC curves and Reliability scores for each forecast hour.
Returns:
A pandas DataFrame containing forecast metadata as well as DistributedROC and Reliability objects.
"""
score_columns = ["Run_Date", "Forecast_Hour",... | Calculates ROC curves and Reliability scores for each forecast hour.
Returns:
A pandas DataFrame containing forecast metadata as well as DistributedROC and Reliability objects. | entailment |
def evaluate_period_forecasts(self):
"""
Evaluates ROC and Reliability scores for forecasts over the full period from start hour to end hour
Returns:
A pandas DataFrame with full-period metadata and verification statistics
"""
score_columns = ["Run_Date", "Ensemble N... | Evaluates ROC and Reliability scores for forecasts over the full period from start hour to end hour
Returns:
A pandas DataFrame with full-period metadata and verification statistics | entailment |
Subsets and Splits
No community queries yet
The top public SQL queries from the community will appear here once available.