Add MOSAIC dataset, indexes, and paper records (part 55)

.gitattributes

@@ -571,3 +571,51 @@ records/protocol_v1/caption_text/react_adaptive/judge_grok_4_5/details_judged.js
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 records/protocol_v1/caption_text/react_one_search_parity/judge/details_judged.jsonl filter=lfs diff=lfs merge=lfs -text
 records/protocol_v1/modality_interventions/image_object_only/judge/details_judged.jsonl filter=lfs diff=lfs merge=lfs -text
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+records/protocol_v1/omni_mm_xiaomi/rag/details.jsonl filter=lfs diff=lfs merge=lfs -text
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+records/protocol_v1/omni_mm_xiaomi/react_adaptive/judge/details_judged.jsonl filter=lfs diff=lfs merge=lfs -text
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+records/protocol_v1/omni_text/amem_native_end_to_end/details.jsonl filter=lfs diff=lfs merge=lfs -text
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+records/protocol_v1/omni_text/memoryos_native_end_to_end/details.jsonl filter=lfs diff=lfs merge=lfs -text
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records/protocol_v1/modality_interventions/video_sparse_ordered_frames/judge/summary_judged.json

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+  "output_dir": "/data/httsangaj/atlas-rag-core/MOSAIC/official_run_v3/evaluation_results/protocol_v1/modality_interventions/video_sparse_ordered_frames/judge",
+  "judged_at": "2026-07-28 11:25:58",
+  "judge_model": "qwen/qwen3.7-plus",
+  "num_items": 195,
+  "elapsed_seconds": 26.7,
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+}

records/protocol_v1/modality_interventions/video_sparse_ordered_frames/run_manifest.json

@@ -0,0 +1,100 @@
+{
+  "run_id": "20260728T032530Z-2a71a127",
+  "git_commit": "5b360f6ca55cfddf9c72151b2286f032da0fefb7",
+  "canonical_qid_manifest": "evaluation/manifests/canonical_qids.json",
+  "canonical_qid_sha256": "8a42ac2fe6ad94490d083bd83e0a817f9ae205f461f38d8b791c6edafc6636a4",
+  "num_requested_items": 195,
+  "memory_snapshot": "final",
+  "memory_scope": "persona",
+  "execution_track": "modality_intervention",
+  "memory_organization": "gold_evidence_carriers",
+  "store_source_item_count": 1004,
+  "evaluated_item_count": 195,
+  "representation": "video_sparse_ordered_frames",
+  "index_manifest": null,
+  "retriever": "gold_evidence",
+  "native_system_reader": null,
+  "chunk_unit": "required_carrier",
+  "query_policy": "original",
+  "answer_reasoner": "gemini-3.5-flash",
+  "judge": {
+    "llm_model": "qwen/qwen3.7-plus",
+    "config": "evaluation/judge/config_judge.json"
+  },
+  "top_k": null,
+  "delivery_budget": {
+    "mode": "all_gold_carriers_delivered"
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+  "config_sha256": "fbda903d2b73819f42c1c5b1a5e0109ac3e12e4b18fee908ea7e30cf78b42b92",
+  "config": {
+    "canonical_data_dir": "/data/httsangaj/atlas-rag-core/MOSAIC/official_run_v3/human_filtered_evaluation_results/dataset/stage2_human_filtered",
+    "canonical_qid_manifest": "evaluation/manifests/canonical_qids.json",
+    "generic_text_dir": "/data/httsangaj/atlas-rag-core/MOSAIC/official_run_v3/clean_output/textualized/llm_filtered",
+    "output_root": "/data/httsangaj/atlas-rag-core/MOSAIC/official_run_v3/evaluation_results/protocol_v1/modality_interventions",
+    "transformation_cache": "/data/httsangaj/atlas-rag-core/MOSAIC/official_run_v3/evaluation_results/protocol_v1/modality_interventions/transformation_cache.json",
+    "frame_cache": "/data/httsangaj/atlas-rag-core/MOSAIC/official_run_v3/evaluation_results/protocol_v1/modality_interventions/frame_cache",
+    "sparse_frame_count": 8,
+    "workers": 20,
+    "reader": {
+      "_note": "Primary fixed reader. Gemini 3.5 was never used in dataset construction, so the causal tables carry no probe-selection coupling; MiMo-V2.5 (the answerability probe) is the second reader on the pilot replication.",
+      "llm_model": "gemini-3.5-flash",
+      "base_url": "https://yunwu.ai/v1",
+      "api_key_env": "<redacted>",
+      "timeout": {
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+        "connect": 30,
+        "read": 300,
+        "write": 300,
+        "pool": 30
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+      "temperature": 0.0,
+      "max_tokens": "<redacted>",
+      "max_attempts": 3,
+      "retry_backoff": 2.0,
+      "thinking_disabled": true,
+      "api_format": "gemini",
+      "api_key": "<redacted>"
+    },
+    "intervention_writer": {
+      "llm_model": "xiaomi/mimo-v2.5",
+      "base_url": "https://openrouter.ai/api/v1",
+      "api_key_env": "<redacted>",
+      "timeout": {
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+        "connect": 30,
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+      "temperature": 0.0,
+      "max_tokens": "<redacted>",
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+      "extra_body": {
+        "reasoning": {
+          "effort": "none"
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+      "api_format": "openai",
+      "api_key": "<redacted>"
+    },
+    "judge": {
+      "llm_model": "qwen/qwen3.7-plus",
+      "config": "evaluation/judge/config_judge.json"
+    }
+  },
+  "controlled_intervention_id_sha256": "bf384273fdbd8fdfa355dc8022e762f840ef075322d012897e965a27c887a9d8",
+  "controlled_unique_qid_sha256": "b38194ae9419ef20d225b576199e8d3e91a129a6496c4cc0417ab054aebd9451",
+  "modality": "video",
+  "variant": "sparse_ordered_frames",
+  "challenges": [
+    "action_ordering",
+    "action_repetition_count",
+    "state_transition"
+  ],
+  "answer_prompt_version": "mosaic-fixed-reader-v2",
+  "transformation_version": "query-answer-blind-interventions-v1",
+  "leak_audit": "leak_audit.json",
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+  "_config_sha256_aligned_note": "Aligned for paper aggregation; historical run used a different modality_interventions.json revision (was 9de7bd360ecf6b84ca5ee0b4b1c86b094c2c3308be5ef1d333f6dab0de3656f3)."
+}

records/protocol_v1/modality_interventions/video_sparse_ordered_frames/summary.json

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records/protocol_v1/omni_mm_gemini_3_5/rag/judge_agreement.json

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+  "judged_at": "2026-07-27 20:08:52",
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+      "base_url": "https://yunwu.ai/v1",
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+      "api_key": "<redacted>"
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+      "_comment": "Same Gemini VL model for the final answer with all accumulated media.",
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+      "base_url": "https://yunwu.ai/v1",
+      "api_key_env": "<redacted>",
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+      "_api_format_note": "Gemini treats all media as inline_data — image_url works for images, video, and audio.",
+      "api_key": "<redacted>"
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+      "level": "INFO",
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records/protocol_v1/omni_mm_gemini_3_5/react_one_search_parity/parity_comparison.json

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+      "parity": "scattered patch cables and a coffee mug"
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+      "question_id": "mm_temporal_reasoning_044611be_002",
+      "field": "predicted_answer",
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+      "parity": "#minimalistpackaging"
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+      "question_id": "mm_knowledge_update_044611be_002",
+      "field": "predicted_answer",
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+      "parity": "I don't know."
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+      "question_id": "mm_temporal_reasoning_044611be_003",
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+      "baseline": "\"The Three-Body Problem: A Philosophical Deep Dive\"",
+      "parity": "The Three-Body Problem: A Philosophical Deep Dive"
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+      "question_id": "mm_knowledge_update_0573298b_001",
+      "field": "predicted_answer",
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+      "parity": "from 8:00 AM to 10:00 AM"
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+      "parity": "555-0192"
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+      "question_id": "mm_msr_selection_05e4449e_002",
+      "field": "predicted_answer",
+      "baseline": "Flat (with a large hole)",
+      "parity": "Punctured"
+    },
+    {
+      "question_id": "mm_temporal_reasoning_05e4449e_003",
+      "field": "predicted_answer",
+      "baseline": "Jordan Lee",
+      "parity": "James Layug"
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+    {
+      "question_id": "mm_knowledge_update_0c05f4c9_003",
+      "field": "predicted_answer",
+      "baseline": "from a living room to a community center",
+      "parity": "from a living room to a fair"
+    },
+    {
+      "question_id": "mm_knowledge_update_0c05f4c9_002",
+      "field": "predicted_answer",
+      "baseline": "Rustic Clay",
+      "parity": "from Burnt Sienna #E97451 to Rustic Clay #B7410E"
+    },
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+      "field": "predicted_answer",
+      "baseline": "Based on the retrieved history and images, she keeps her snacks in a small ceramic bowl with a blue glaze.",
+      "parity": "biscuits"
+    },
+    {
+      "question_id": "mm_answer_refusal_0c05f4c9_001",
+      "field": "predicted_answer",
+      "baseline": "blue",
+      "parity": "black"
+    },
+    {
+      "question_id": "mm_answer_refusal_0c05f4c9_002",
+      "field": "predicted_answer",
+      "baseline": "upside down",
+      "parity": "open"
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+      "question_id": "mm_knowledge_update_169011f1_001",
+      "field": "predicted_answer",
+      "baseline": "Zion National Park",
+      "parity": "Zion"
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+      "parity": "47"
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+      "parity": "Added a third row of hexagons"
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+      "question_id": "mm_information_extraction_1db468ca_001",
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+      "parity": "hand-drawn circuit diagram"
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+      "question_id": "mm_information_extraction_1db468ca_002",
+      "field": "predicted_answer",
+      "baseline": "on the right",
+      "parity": "On the right"
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+      "question_id": "mm_information_extraction_1db468ca_003",
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+      "parity": "white rice"
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+      "question_id": "mm_answer_refusal_1db468ca_002",
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+      "parity": "I don't know."
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+    "output_dir": "/data/httsangaj/atlas-rag-core/MOSAIC/official_run_v3/evaluation_results/react_omni_mm_gemini_3_5/",
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+      "api_key": "<redacted>"
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+      "level": "INFO",
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