Datasets:
Remove CASP14 bug reproduction and old-file comparison; analysis scripts read TAPE's download directly
7bf35b0 verified | { | |
| "checks": [ | |
| { | |
| "ok": true, | |
| "check": "all files share one schema (names and types)" | |
| }, | |
| { | |
| "ok": true, | |
| "check": "casp/casp12.parquet: 40 rows, consistent (no problems), duplicate sequences: 0" | |
| }, | |
| { | |
| "ok": true, | |
| "check": "casp/casp13.parquet: 20 rows, consistent (no problems), duplicate sequences: 0" | |
| }, | |
| { | |
| "ok": true, | |
| "check": "casp/casp14.parquet: 34 rows, consistent (no problems), duplicate sequences: 0" | |
| }, | |
| { | |
| "ok": true, | |
| "check": "casp/casp15.parquet: 30 rows, consistent (no problems), duplicate sequences: 0" | |
| }, | |
| { | |
| "ok": true, | |
| "check": "casp/casp16.parquet: 61 rows, consistent (no problems), duplicate sequences: 0" | |
| }, | |
| { | |
| "ok": true, | |
| "check": "rcsb/casp12.parquet: 41 rows, consistent (no problems), duplicate sequences: 0" | |
| }, | |
| { | |
| "ok": true, | |
| "check": "rcsb/casp13.parquet: 41 rows, consistent (no problems), duplicate sequences: 0" | |
| }, | |
| { | |
| "ok": true, | |
| "check": "rcsb/casp14.parquet: 17 rows, consistent (no problems), duplicate sequences: 0" | |
| }, | |
| { | |
| "ok": true, | |
| "check": "rcsb/casp15.parquet: 58 rows, consistent (no problems), duplicate sequences: 0" | |
| }, | |
| { | |
| "ok": true, | |
| "check": "rcsb/casp16.parquet: 24 rows, consistent (no problems), duplicate sequences: 0" | |
| }, | |
| { | |
| "ok": true, | |
| "check": "tape/casp12.parquet: 21 rows, consistent (no problems); kept as in TAPE: 0 repeated sequences, 0 repeated ids" | |
| }, | |
| { | |
| "ok": true, | |
| "check": "tape/cb513.parquet: 513 rows, consistent (no problems); kept as in TAPE: 79 repeated sequences, 79 repeated ids" | |
| }, | |
| { | |
| "ok": true, | |
| "check": "tape/train.parquet: 8678 rows, consistent (no problems); kept as in TAPE: 0 repeated sequences, 0 repeated ids" | |
| }, | |
| { | |
| "ok": true, | |
| "check": "tape/ts115.parquet: 115 rows, consistent (no problems); kept as in TAPE: 0 repeated sequences, 0 repeated ids" | |
| }, | |
| { | |
| "ok": true, | |
| "check": "tape/validation.parquet: 2170 rows, consistent (no problems); kept as in TAPE: 0 repeated sequences, 0 repeated ids" | |
| }, | |
| { | |
| "ok": true, | |
| "check": "tape/train.parquet: identical to TAPE's secondary_structure_train.json (8678 rows; differences: none)" | |
| }, | |
| { | |
| "ok": true, | |
| "check": "tape/validation.parquet: identical to TAPE's secondary_structure_valid.json (2170 rows; differences: none)" | |
| }, | |
| { | |
| "ok": true, | |
| "check": "tape/cb513.parquet: identical to TAPE's secondary_structure_cb513.json (513 rows; differences: none)" | |
| }, | |
| { | |
| "ok": true, | |
| "check": "tape/ts115.parquet: identical to TAPE's secondary_structure_ts115.json (115 rows; differences: none)" | |
| }, | |
| { | |
| "ok": true, | |
| "check": "tape/casp12.parquet: identical to TAPE's secondary_structure_casp12.json (21 rows; differences: none)" | |
| }, | |
| { | |
| "ok": true, | |
| "check": "rcsb/casp12: TAPE's 21 chains present and flagged in_tape (21)" | |
| }, | |
| { | |
| "ok": true, | |
| "check": "rcsb/casp12: labels agree with TAPE on 99.94% of 6,417 residues resolved in both" | |
| }, | |
| { | |
| "ok": true, | |
| "check": "rcsb/casp12: all 45 CASP-listed targets covered or logged (45 in rows)" | |
| }, | |
| { | |
| "ok": true, | |
| "check": "rcsb/casp13: all 41 CASP-listed targets covered or logged (41 in rows)" | |
| }, | |
| { | |
| "ok": true, | |
| "check": "rcsb/casp14: all 26 CASP-listed targets covered or logged (26 in rows)" | |
| }, | |
| { | |
| "ok": true, | |
| "check": "rcsb/casp15: all 65 CASP-listed targets covered or logged (59 in rows)" | |
| }, | |
| { | |
| "ok": true, | |
| "check": "rcsb/casp16: all 44 CASP-listed targets covered or logged (43 in rows)" | |
| } | |
| ], | |
| "rcsb_casp12_vs_tape": { | |
| "residues": 6417, | |
| "agree": 6413, | |
| "disorder_flag_vs_pdb": { | |
| "tape_disorder_1__pdb_resolved_1": 6417, | |
| "tape_disorder_0__pdb_resolved_0": 833, | |
| "tape_disorder_0__pdb_resolved_1": 3, | |
| "tape_disorder_1__pdb_resolved_0": 1, | |
| "tape_disorder_1__pdb_not_aligned": 2 | |
| } | |
| }, | |
| "passed": true, | |
| "date": "2026-11-14" | |
| } |