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3.13 kB
| # Copyright 2020 MONAI Consortium | |
| # Licensed under the Apache License, Version 2.0 (the "License"); | |
| # you may not use this file except in compliance with the License. | |
| # You may obtain a copy of the License at | |
| # http://www.apache.org/licenses/LICENSE-2.0 | |
| # Unless required by applicable law or agreed to in writing, software | |
| # distributed under the License is distributed on an "AS IS" BASIS, | |
| # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. | |
| # See the License for the specific language governing permissions and | |
| # limitations under the License. | |
| from typing import Sequence, Tuple, Union | |
| import numpy as np | |
| __all__ = ["same_padding", "calculate_out_shape", "gaussian_1d"] | |
| def same_padding( | |
| kernel_size: Union[Sequence[int], int], dilation: Union[Sequence[int], int] = 1 | |
| ) -> Union[Tuple[int, ...], int]: | |
| """ | |
| Return the padding value needed to ensure a convolution using the given kernel size produces an output of the same | |
| shape as the input for a stride of 1, otherwise ensure a shape of the input divided by the stride rounded down. | |
| Raises: | |
| NotImplementedError: When ``np.any((kernel_size - 1) * dilation % 2 == 1)``. | |
| """ | |
| kernel_size_np = np.atleast_1d(kernel_size) | |
| dilation_np = np.atleast_1d(dilation) | |
| if np.any((kernel_size_np - 1) * dilation % 2 == 1): | |
| raise NotImplementedError( | |
| f"Same padding not available for kernel_size={kernel_size_np} and dilation={dilation_np}." | |
| ) | |
| padding_np = (kernel_size_np - 1) / 2 * dilation_np | |
| padding = tuple(int(p) for p in padding_np) | |
| return padding if len(padding) > 1 else padding[0] | |
| def calculate_out_shape( | |
| in_shape: Union[Sequence[int], int], | |
| kernel_size: Union[Sequence[int], int], | |
| stride: Union[Sequence[int], int], | |
| padding: Union[Sequence[int], int], | |
| ) -> Union[Tuple[int, ...], int]: | |
| """ | |
| Calculate the output tensor shape when applying a convolution to a tensor of shape `inShape` with kernel size | |
| `kernel_size`, stride value `stride`, and input padding value `padding`. All arguments can be scalars or multiple | |
| values, return value is a scalar if all inputs are scalars. | |
| """ | |
| in_shape_np = np.atleast_1d(in_shape) | |
| kernel_size_np = np.atleast_1d(kernel_size) | |
| stride_np = np.atleast_1d(stride) | |
| padding_np = np.atleast_1d(padding) | |
| out_shape_np = ((in_shape_np - kernel_size_np + padding_np + padding_np) // stride_np) + 1 | |
| out_shape = tuple(int(s) for s in out_shape_np) | |
| return out_shape if len(out_shape) > 1 else out_shape[0] | |
| def gaussian_1d(sigma: float, truncated: float = 4.0) -> np.ndarray: | |
| """ | |
| one dimensional gaussian kernel. | |
| Args: | |
| sigma: std of the kernel | |
| truncated: tail length | |
| Raises: | |
| ValueError: When ``sigma`` is nonpositive. | |
| Returns: | |
| 1D numpy array | |
| """ | |
| if sigma <= 0: | |
| raise ValueError(f"sigma must be positive, got {sigma}.") | |
| tail = int(sigma * truncated + 0.5) | |
| sigma2 = sigma * sigma | |
| x = np.arange(-tail, tail + 1) | |
| out = np.exp(-0.5 / sigma2 * x ** 2) | |
| out /= out.sum() | |
| return out | |