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21.4 kB
| import os | |
| import random | |
| import tempfile | |
| import unittest | |
| import numpy as np | |
| import pandas as pd | |
| import pyarrow as pa | |
| import pytest | |
| from absl.testing import parameterized | |
| import datasets | |
| from datasets.arrow_writer import ArrowWriter | |
| from datasets.features import Array2D, Array3D, Array4D, Array5D, Value | |
| from datasets.features.features import Array3DExtensionType, PandasArrayExtensionDtype, _ArrayXD | |
| from datasets.formatting.formatting import NumpyArrowExtractor, SimpleArrowExtractor | |
| SHAPE_TEST_1 = (30, 487) | |
| SHAPE_TEST_2 = (36, 1024) | |
| SHAPE_TEST_3 = (None, 100) | |
| SPEED_TEST_SHAPE = (100, 100) | |
| SPEED_TEST_N_EXAMPLES = 100 | |
| DEFAULT_FEATURES = datasets.Features( | |
| { | |
| "text": Array2D(SHAPE_TEST_1, dtype="float32"), | |
| "image": Array2D(SHAPE_TEST_2, dtype="float32"), | |
| "dynamic": Array2D(SHAPE_TEST_3, dtype="float32"), | |
| } | |
| ) | |
| def generate_examples(features: dict, num_examples=100, seq_shapes=None): | |
| dummy_data = [] | |
| seq_shapes = seq_shapes or {} | |
| for i in range(num_examples): | |
| example = {} | |
| for col_id, (k, v) in enumerate(features.items()): | |
| if isinstance(v, _ArrayXD): | |
| if k == "dynamic": | |
| first_dim = random.randint(1, 3) | |
| data = np.random.rand(first_dim, *v.shape[1:]).astype(v.dtype) | |
| else: | |
| data = np.random.rand(*v.shape).astype(v.dtype) | |
| elif isinstance(v, datasets.Value): | |
| data = "foo" | |
| elif isinstance(v, datasets.Sequence): | |
| while isinstance(v, datasets.Sequence): | |
| v = v.feature | |
| shape = seq_shapes[k] | |
| data = np.random.rand(*shape).astype(v.dtype) | |
| example[k] = data | |
| dummy_data.append((i, example)) | |
| return dummy_data | |
| class ExtensionTypeCompatibilityTest(unittest.TestCase): | |
| def test_array2d_nonspecific_shape(self): | |
| with tempfile.TemporaryDirectory() as tmp_dir: | |
| my_features = DEFAULT_FEATURES.copy() | |
| with ArrowWriter(features=my_features, path=os.path.join(tmp_dir, "beta.arrow")) as writer: | |
| for key, record in generate_examples( | |
| features=my_features, | |
| num_examples=1, | |
| ): | |
| example = my_features.encode_example(record) | |
| writer.write(example) | |
| num_examples, num_bytes = writer.finalize() | |
| dataset = datasets.Dataset.from_file(os.path.join(tmp_dir, "beta.arrow")) | |
| dataset.set_format("numpy") | |
| row = dataset[0] | |
| first_shape = row["image"].shape | |
| second_shape = row["text"].shape | |
| self.assertTrue(first_shape is not None and second_shape is not None, "need atleast 2 different shapes") | |
| self.assertEqual(len(first_shape), len(second_shape), "both shapes are supposed to be equal length") | |
| self.assertNotEqual(first_shape, second_shape, "shapes must not be the same") | |
| del dataset | |
| def test_multiple_extensions_same_row(self): | |
| with tempfile.TemporaryDirectory() as tmp_dir: | |
| my_features = DEFAULT_FEATURES.copy() | |
| with ArrowWriter(features=my_features, path=os.path.join(tmp_dir, "beta.arrow")) as writer: | |
| for key, record in generate_examples(features=my_features, num_examples=1): | |
| example = my_features.encode_example(record) | |
| writer.write(example) | |
| num_examples, num_bytes = writer.finalize() | |
| dataset = datasets.Dataset.from_file(os.path.join(tmp_dir, "beta.arrow")) | |
| dataset.set_format("numpy") | |
| row = dataset[0] | |
| first_len = len(row["image"].shape) | |
| second_len = len(row["text"].shape) | |
| third_len = len(row["dynamic"].shape) | |
| self.assertEqual(first_len, 2, "use a sequence type if dim is < 2") | |
| self.assertEqual(second_len, 2, "use a sequence type if dim is < 2") | |
| self.assertEqual(third_len, 2, "use a sequence type if dim is < 2") | |
| del dataset | |
| def test_compatability_with_string_values(self): | |
| with tempfile.TemporaryDirectory() as tmp_dir: | |
| my_features = DEFAULT_FEATURES.copy() | |
| my_features["image_id"] = datasets.Value("string") | |
| with ArrowWriter(features=my_features, path=os.path.join(tmp_dir, "beta.arrow")) as writer: | |
| for key, record in generate_examples(features=my_features, num_examples=1): | |
| example = my_features.encode_example(record) | |
| writer.write(example) | |
| num_examples, num_bytes = writer.finalize() | |
| dataset = datasets.Dataset.from_file(os.path.join(tmp_dir, "beta.arrow")) | |
| self.assertIsInstance(dataset[0]["image_id"], str, "image id must be of type string") | |
| del dataset | |
| def test_extension_indexing(self): | |
| with tempfile.TemporaryDirectory() as tmp_dir: | |
| my_features = DEFAULT_FEATURES.copy() | |
| my_features["explicit_ext"] = Array2D((3, 3), dtype="float32") | |
| with ArrowWriter(features=my_features, path=os.path.join(tmp_dir, "beta.arrow")) as writer: | |
| for key, record in generate_examples(features=my_features, num_examples=1): | |
| example = my_features.encode_example(record) | |
| writer.write(example) | |
| num_examples, num_bytes = writer.finalize() | |
| dataset = datasets.Dataset.from_file(os.path.join(tmp_dir, "beta.arrow")) | |
| dataset.set_format("numpy") | |
| data = dataset[0]["explicit_ext"] | |
| self.assertIsInstance(data, np.ndarray, "indexed extension must return numpy.ndarray") | |
| del dataset | |
| def get_array_feature_types(): | |
| shape_1 = [3] * 5 | |
| shape_2 = [3, 4, 5, 6, 7] | |
| return [ | |
| { | |
| "testcase_name": f"{d}d", | |
| "array_feature": array_feature, | |
| "shape_1": tuple(shape_1[:d]), | |
| "shape_2": tuple(shape_2[:d]), | |
| } | |
| for d, array_feature in zip(range(2, 6), [Array2D, Array3D, Array4D, Array5D]) | |
| ] | |
| class ArrayXDTest(unittest.TestCase): | |
| def get_features(self, array_feature, shape_1, shape_2): | |
| return datasets.Features( | |
| { | |
| "image": array_feature(shape_1, dtype="float32"), | |
| "source": Value("string"), | |
| "matrix": array_feature(shape_2, dtype="float32"), | |
| } | |
| ) | |
| def get_dict_example_0(self, shape_1, shape_2): | |
| return { | |
| "image": np.random.rand(*shape_1).astype("float32"), | |
| "source": "foo", | |
| "matrix": np.random.rand(*shape_2).astype("float32"), | |
| } | |
| def get_dict_example_1(self, shape_1, shape_2): | |
| return { | |
| "image": np.random.rand(*shape_1).astype("float32"), | |
| "matrix": np.random.rand(*shape_2).astype("float32"), | |
| "source": "bar", | |
| } | |
| def get_dict_examples(self, shape_1, shape_2): | |
| return { | |
| "image": np.random.rand(2, *shape_1).astype("float32").tolist(), | |
| "source": ["foo", "bar"], | |
| "matrix": np.random.rand(2, *shape_2).astype("float32").tolist(), | |
| } | |
| def _check_getitem_output_type(self, dataset, shape_1, shape_2, first_matrix): | |
| matrix_column = dataset["matrix"] | |
| self.assertIsInstance(matrix_column, list) | |
| self.assertIsInstance(matrix_column[0], list) | |
| self.assertIsInstance(matrix_column[0][0], list) | |
| self.assertTupleEqual(np.array(matrix_column).shape, (2, *shape_2)) | |
| matrix_field_of_first_example = dataset[0]["matrix"] | |
| self.assertIsInstance(matrix_field_of_first_example, list) | |
| self.assertIsInstance(matrix_field_of_first_example, list) | |
| self.assertEqual(np.array(matrix_field_of_first_example).shape, shape_2) | |
| np.testing.assert_array_equal(np.array(matrix_field_of_first_example), np.array(first_matrix)) | |
| matrix_field_of_first_two_examples = dataset[:2]["matrix"] | |
| self.assertIsInstance(matrix_field_of_first_two_examples, list) | |
| self.assertIsInstance(matrix_field_of_first_two_examples[0], list) | |
| self.assertIsInstance(matrix_field_of_first_two_examples[0][0], list) | |
| self.assertTupleEqual(np.array(matrix_field_of_first_two_examples).shape, (2, *shape_2)) | |
| with dataset.formatted_as("numpy"): | |
| self.assertTupleEqual(dataset["matrix"].shape, (2, *shape_2)) | |
| self.assertEqual(dataset[0]["matrix"].shape, shape_2) | |
| self.assertTupleEqual(dataset[:2]["matrix"].shape, (2, *shape_2)) | |
| with dataset.formatted_as("pandas"): | |
| self.assertIsInstance(dataset["matrix"], pd.Series) | |
| self.assertIsInstance(dataset[0]["matrix"], pd.Series) | |
| self.assertIsInstance(dataset[:2]["matrix"], pd.Series) | |
| self.assertTupleEqual(dataset["matrix"].to_numpy().shape, (2, *shape_2)) | |
| self.assertTupleEqual(dataset[0]["matrix"].to_numpy().shape, (1, *shape_2)) | |
| self.assertTupleEqual(dataset[:2]["matrix"].to_numpy().shape, (2, *shape_2)) | |
| def test_write(self, array_feature, shape_1, shape_2): | |
| with tempfile.TemporaryDirectory() as tmp_dir: | |
| my_features = self.get_features(array_feature, shape_1, shape_2) | |
| my_examples = [ | |
| (0, self.get_dict_example_0(shape_1, shape_2)), | |
| (1, self.get_dict_example_1(shape_1, shape_2)), | |
| ] | |
| with ArrowWriter(features=my_features, path=os.path.join(tmp_dir, "beta.arrow")) as writer: | |
| for key, record in my_examples: | |
| example = my_features.encode_example(record) | |
| writer.write(example) | |
| num_examples, num_bytes = writer.finalize() | |
| dataset = datasets.Dataset.from_file(os.path.join(tmp_dir, "beta.arrow")) | |
| self._check_getitem_output_type(dataset, shape_1, shape_2, my_examples[0][1]["matrix"]) | |
| del dataset | |
| def test_write_batch(self, array_feature, shape_1, shape_2): | |
| with tempfile.TemporaryDirectory() as tmp_dir: | |
| my_features = self.get_features(array_feature, shape_1, shape_2) | |
| dict_examples = self.get_dict_examples(shape_1, shape_2) | |
| dict_examples = my_features.encode_batch(dict_examples) | |
| with ArrowWriter(features=my_features, path=os.path.join(tmp_dir, "beta.arrow")) as writer: | |
| writer.write_batch(dict_examples) | |
| num_examples, num_bytes = writer.finalize() | |
| dataset = datasets.Dataset.from_file(os.path.join(tmp_dir, "beta.arrow")) | |
| self._check_getitem_output_type(dataset, shape_1, shape_2, dict_examples["matrix"][0]) | |
| del dataset | |
| def test_from_dict(self, array_feature, shape_1, shape_2): | |
| dict_examples = self.get_dict_examples(shape_1, shape_2) | |
| dataset = datasets.Dataset.from_dict( | |
| dict_examples, features=self.get_features(array_feature, shape_1, shape_2) | |
| ) | |
| self._check_getitem_output_type(dataset, shape_1, shape_2, dict_examples["matrix"][0]) | |
| del dataset | |
| class ArrayXDDynamicTest(unittest.TestCase): | |
| def get_one_col_dataset(self, first_dim_list, fixed_shape): | |
| features = datasets.Features({"image": Array3D(shape=(None, *fixed_shape), dtype="float32")}) | |
| dict_values = {"image": [np.random.rand(fdim, *fixed_shape).astype("float32") for fdim in first_dim_list]} | |
| dataset = datasets.Dataset.from_dict(dict_values, features=features) | |
| return dataset | |
| def get_two_col_datasset(self, first_dim_list, fixed_shape): | |
| features = datasets.Features( | |
| {"image": Array3D(shape=(None, *fixed_shape), dtype="float32"), "text": Value("string")} | |
| ) | |
| dict_values = { | |
| "image": [np.random.rand(fdim, *fixed_shape).astype("float32") for fdim in first_dim_list], | |
| "text": ["text" for _ in first_dim_list], | |
| } | |
| dataset = datasets.Dataset.from_dict(dict_values, features=features) | |
| return dataset | |
| def test_to_pylist(self): | |
| fixed_shape = (2, 2) | |
| first_dim_list = [1, 3, 10] | |
| dataset = self.get_one_col_dataset(first_dim_list, fixed_shape) | |
| arr_xd = SimpleArrowExtractor().extract_column(dataset._data) | |
| self.assertIsInstance(arr_xd.type, Array3DExtensionType) | |
| pylist = arr_xd.to_pylist() | |
| for first_dim, single_arr in zip(first_dim_list, pylist): | |
| self.assertIsInstance(single_arr, list) | |
| self.assertTupleEqual(np.array(single_arr).shape, (first_dim, *fixed_shape)) | |
| def test_to_numpy(self): | |
| fixed_shape = (2, 2) | |
| # ragged | |
| first_dim_list = [1, 3, 10] | |
| dataset = self.get_one_col_dataset(first_dim_list, fixed_shape) | |
| arr_xd = SimpleArrowExtractor().extract_column(dataset._data) | |
| self.assertIsInstance(arr_xd.type, Array3DExtensionType) | |
| # replace with arr_xd = arr_xd.combine_chunks() when 12.0.0 will be the minimal required PyArrow version | |
| arr_xd = arr_xd.type.wrap_array(pa.concat_arrays([chunk.storage for chunk in arr_xd.chunks])) | |
| numpy_arr = arr_xd.to_numpy() | |
| self.assertIsInstance(numpy_arr, np.ndarray) | |
| self.assertEqual(numpy_arr.dtype, object) | |
| for first_dim, single_arr in zip(first_dim_list, numpy_arr): | |
| self.assertIsInstance(single_arr, np.ndarray) | |
| self.assertTupleEqual(single_arr.shape, (first_dim, *fixed_shape)) | |
| # non-ragged | |
| first_dim_list = [4, 4, 4] | |
| dataset = self.get_one_col_dataset(first_dim_list, fixed_shape) | |
| arr_xd = SimpleArrowExtractor().extract_column(dataset._data) | |
| self.assertIsInstance(arr_xd.type, Array3DExtensionType) | |
| # replace with arr_xd = arr_xd.combine_chunks() when 12.0.0 will be the minimal required PyArrow version | |
| arr_xd = arr_xd.type.wrap_array(pa.concat_arrays([chunk.storage for chunk in arr_xd.chunks])) | |
| numpy_arr = arr_xd.to_numpy() | |
| self.assertIsInstance(numpy_arr, np.ndarray) | |
| self.assertNotEqual(numpy_arr.dtype, object) | |
| for first_dim, single_arr in zip(first_dim_list, numpy_arr): | |
| self.assertIsInstance(single_arr, np.ndarray) | |
| self.assertTupleEqual(single_arr.shape, (first_dim, *fixed_shape)) | |
| def test_iter_dataset(self): | |
| fixed_shape = (2, 2) | |
| first_dim_list = [1, 3, 10] | |
| dataset = self.get_one_col_dataset(first_dim_list, fixed_shape) | |
| for first_dim, ds_row in zip(first_dim_list, dataset): | |
| single_arr = ds_row["image"] | |
| self.assertIsInstance(single_arr, list) | |
| self.assertTupleEqual(np.array(single_arr).shape, (first_dim, *fixed_shape)) | |
| def test_to_pandas(self): | |
| fixed_shape = (2, 2) | |
| # ragged | |
| first_dim_list = [1, 3, 10] | |
| dataset = self.get_one_col_dataset(first_dim_list, fixed_shape) | |
| df = dataset.to_pandas() | |
| self.assertEqual(type(df.image.dtype), PandasArrayExtensionDtype) | |
| numpy_arr = df.image.to_numpy() | |
| self.assertIsInstance(numpy_arr, np.ndarray) | |
| self.assertEqual(numpy_arr.dtype, object) | |
| for first_dim, single_arr in zip(first_dim_list, numpy_arr): | |
| self.assertIsInstance(single_arr, np.ndarray) | |
| self.assertTupleEqual(single_arr.shape, (first_dim, *fixed_shape)) | |
| # non-ragged | |
| first_dim_list = [4, 4, 4] | |
| dataset = self.get_one_col_dataset(first_dim_list, fixed_shape) | |
| df = dataset.to_pandas() | |
| self.assertEqual(type(df.image.dtype), PandasArrayExtensionDtype) | |
| numpy_arr = df.image.to_numpy() | |
| self.assertIsInstance(numpy_arr, np.ndarray) | |
| self.assertNotEqual(numpy_arr.dtype, object) | |
| for first_dim, single_arr in zip(first_dim_list, numpy_arr): | |
| self.assertIsInstance(single_arr, np.ndarray) | |
| self.assertTupleEqual(single_arr.shape, (first_dim, *fixed_shape)) | |
| def test_map_dataset(self): | |
| fixed_shape = (2, 2) | |
| first_dim_list = [1, 3, 10] | |
| dataset = self.get_one_col_dataset(first_dim_list, fixed_shape) | |
| dataset = dataset.map(lambda a: {"image": np.concatenate([a] * 2)}, input_columns="image") | |
| # check also if above function resulted with 2x bigger first dim | |
| for first_dim, ds_row in zip(first_dim_list, dataset): | |
| single_arr = ds_row["image"] | |
| self.assertIsInstance(single_arr, list) | |
| self.assertTupleEqual(np.array(single_arr).shape, (first_dim * 2, *fixed_shape)) | |
| def test_table_to_pandas(dtype, dummy_value): | |
| features = datasets.Features({"foo": datasets.Array2D(dtype=dtype, shape=(2, 2))}) | |
| dataset = datasets.Dataset.from_dict({"foo": [[[dummy_value] * 2] * 2]}, features=features) | |
| df = dataset._data.to_pandas() | |
| assert type(df.foo.dtype) == PandasArrayExtensionDtype | |
| arr = df.foo.to_numpy() | |
| np.testing.assert_equal(arr, np.array([[[dummy_value] * 2] * 2], dtype=np.dtype(dtype))) | |
| def test_array_xd_numpy_arrow_extractor(dtype, dummy_value): | |
| features = datasets.Features({"foo": datasets.Array2D(dtype=dtype, shape=(2, 2))}) | |
| dataset = datasets.Dataset.from_dict({"foo": [[[dummy_value] * 2] * 2]}, features=features) | |
| arr = NumpyArrowExtractor().extract_column(dataset._data) | |
| assert isinstance(arr, np.ndarray) | |
| np.testing.assert_equal(arr, np.array([[[dummy_value] * 2] * 2], dtype=np.dtype(dtype))) | |
| def test_array_xd_with_none(): | |
| # Fixed shape | |
| features = datasets.Features({"foo": datasets.Array2D(dtype="int32", shape=(2, 2))}) | |
| dummy_array = np.array([[1, 2], [3, 4]], dtype="int32") | |
| dataset = datasets.Dataset.from_dict({"foo": [dummy_array, None, dummy_array, None]}, features=features) | |
| arr = NumpyArrowExtractor().extract_column(dataset._data) | |
| assert isinstance(arr, np.ndarray) and arr.dtype == np.float64 and arr.shape == (4, 2, 2) | |
| assert np.allclose(arr[0], dummy_array) and np.allclose(arr[2], dummy_array) | |
| assert np.all(np.isnan(arr[1])) and np.all(np.isnan(arr[3])) # broadcasted np.nan - use np.all | |
| # Dynamic shape | |
| features = datasets.Features({"foo": datasets.Array2D(dtype="int32", shape=(None, 2))}) | |
| dummy_array = np.array([[1, 2], [3, 4]], dtype="int32") | |
| dataset = datasets.Dataset.from_dict({"foo": [dummy_array, None, dummy_array, None]}, features=features) | |
| arr = NumpyArrowExtractor().extract_column(dataset._data) | |
| assert isinstance(arr, np.ndarray) and arr.dtype == object and arr.shape == (4,) | |
| np.testing.assert_equal(arr[0], dummy_array) | |
| np.testing.assert_equal(arr[2], dummy_array) | |
| assert np.isnan(arr[1]) and np.isnan(arr[3]) # a single np.nan value - np.all not needed | |
| def test_array_xd_with_np(seq_type, dtype, shape, feature_class): | |
| feature = feature_class(dtype=dtype, shape=shape) | |
| data = np.zeros(shape, dtype=dtype) | |
| expected = data.tolist() | |
| if seq_type == "sequence": | |
| feature = datasets.Sequence(feature) | |
| data = [data] | |
| expected = [expected] | |
| elif seq_type == "sequence_of_sequence": | |
| feature = datasets.Sequence(datasets.Sequence(feature)) | |
| data = [[data]] | |
| expected = [[expected]] | |
| ds = datasets.Dataset.from_dict({"col": [data]}, features=datasets.Features({"col": feature})) | |
| assert ds[0]["col"] == expected | |
| def test_dataset_map(with_none): | |
| ds = datasets.Dataset.from_dict({"path": ["path1", "path2"]}) | |
| def process_data(batch): | |
| batch = { | |
| "image": [ | |
| np.array( | |
| [ | |
| [[1, 2, 3], [4, 5, 6], [7, 8, 9]], | |
| [[10, 20, 30], [40, 50, 60], [70, 80, 90]], | |
| [[100, 200, 300], [400, 500, 600], [700, 800, 900]], | |
| ] | |
| ) | |
| for _ in batch["path"] | |
| ] | |
| } | |
| if with_none: | |
| batch["image"][0] = None | |
| return batch | |
| features = datasets.Features({"image": Array3D(dtype="int32", shape=(3, 3, 3))}) | |
| processed_ds = ds.map(process_data, batched=True, remove_columns=ds.column_names, features=features) | |
| assert processed_ds.shape == (2, 1) | |
| with processed_ds.with_format("numpy") as pds: | |
| for i, example in enumerate(pds): | |
| assert "image" in example | |
| assert isinstance(example["image"], np.ndarray) | |
| assert example["image"].shape == (3, 3, 3) | |
| if with_none and i == 0: | |
| assert np.all(np.isnan(example["image"])) | |