Finalize restoration metadata and verified GitHub source linkage

README.md

@@ -12,8 +12,9 @@ Source project: https://github.com/yuhanlydia/PBPF/tree/research/eesd-iclr2027
 
 This repository preserves raw/materialized experimental data, candidate banks,
 evaluation outputs, operational manifests/logs, and the stopped run state.
-[source/](source/) contains browsable source, future plans and completed eval outputs.
-`PBPF-source.bundle` contains the exact source and full Git history.
+The complete source, future plans and completed eval outputs are preserved in
+`PBPF-source.bundle.chunk-*` (reassemble as described in RESTORE.md).
+Small files can also be browsed on the GitHub branch linked above.
 
 **Start with [RESTORE.md](RESTORE.md).** Verify SHA256SUMS, restore the base archive,
 then apply the final stopped-state overlay and verify FINAL_ARTIFACT_FILES.jsonl.
@@ -28,4 +29,7 @@ Dataset sources retain their original licenses/terms; this backup grants no new
 rights. Evaluator labels must not be included in model generation inputs.
 
 GitHub CLI credentials expired after successful source/eval push `8628ea1`.
-Later migration notes are preserved in the bundled source commit.
+Small-file synchronization was completed through the connected GitHub app;
+GitHub commit `913b343` has the same source tree as bundled commit `ed4bdd7`.
+
+The upload is complete only after REMOTE_VERIFICATION.json reports passed.

SHA256SUMS

@@ -0,0 +1,305 @@
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+3042aad54b8aef8cd4a490fe8b236063f51d4b07ca13c93334ef7b124c1f94d9  verify_artifacts.py

SOURCE_SYNC.json

@@ -0,0 +1,7 @@
+{
+  "github_commit": "913b343a3ae782542ce37e5fc1808d44a7550cd1",
+  "bundle_commit": "ed4bdd799816f8a271f3b4cbe122147e79305a90",
+  "identical_tree": "9201ade66e28d3be01adbb40da7b1d51ac5b4a32",
+  "github_small_files": "verified_synced",
+  "source_delivery": "complete_git_bundle"
+}

UPLOAD_STATUS.txt

@@ -1 +0,0 @@
-Upload in progress. Final verification receipt is required before treating the backup as complete.

source/.github/workflows/ci.yml

@@ -1,38 +0,0 @@
-name: ci
-
-on:
-  push:
-  pull_request:
-
-concurrency:
-  group: ci-${{ github.ref }}
-  cancel-in-progress: true
-
-jobs:
-  cpu:
-    runs-on: ubuntu-latest
-    strategy:
-      matrix:
-        python-version: ["3.11", "3.12"]
-    steps:
-      - uses: actions/checkout@v4
-      - uses: actions/setup-python@v5
-        with:
-          python-version: ${{ matrix.python-version }}
-      - run: python -m pip install --upgrade pip
-      - run: python -m pip install -e '.[test,neural]'
-      - run: python -m pytest -q -m 'not gpu and not network'
-        env:
-          HF_HUB_OFFLINE: "1"
-          HF_DATASETS_OFFLINE: "1"
-          TRANSFORMERS_OFFLINE: "1"
-      - run: python -m compileall -q src scripts tests
-      - run: for script in scripts/*.sh scripts/slurm/*.sbatch; do bash -n "$script"; done
-      - name: Complete no-download ICLR smoke DAG
-        shell: bash
-        run: |
-          for command in doctor prepare run aggregate verify package; do
-            pbpf-iclr "$command" --config configs/experiments/iclr_pbpf.yaml --profile local_cpu --output-root "$RUNNER_TEMP/pbpf-iclr" --resume
-          done
-          pbpf-iclr doctor --config configs/experiments/iclr_pbpf.yaml --profile local_cpu --dry-run
-      - run: git diff --check

source/.gitignore

@@ -1,17 +0,0 @@
-__pycache__/
-*.py[cod]
-.pytest_cache/
-*.egg-info/
-build/
-dist/
-.worktrees/
-runs/
-results/*/HumanEval-*/
-results/gpu_gate_frozen_1/
-results/runbugrun_real_pilot_6581/
-results/rbr_real_gate_dataset.json
-results/rbr_gate_b_seed*.pt
-results/rbr_gate_b_seed*.log
-results/rbr_repair_gate_seed*.json
-results/rbr_repair_gate_seed*.log
-results/rbr_soft_prefix_seed*.pt

verify_artifacts.py

@@ -0,0 +1,20 @@
+"""Verify restored checkpoint files with Python's standard library; execute no jobs."""
+import argparse,hashlib,json
+from pathlib import Path
+p=argparse.ArgumentParser(description=__doc__)
+p.add_argument('--root',type=Path,required=True);p.add_argument('--manifest',type=Path,required=True)
+a=p.parse_args();root=a.root.resolve();count=0
+for line in a.manifest.read_text().splitlines():
+ r=json.loads(line);rel=Path(r['path'])
+ if rel.is_absolute() or '..' in rel.parts:raise ValueError('unsafe manifest path')
+ path=root/rel
+ if 'symlink' in r:
+  if not path.is_symlink() or str(path.readlink())!=r['symlink']:raise ValueError('symlink mismatch: '+str(rel))
+ else:
+  if not path.is_file() or path.is_symlink() or path.stat().st_size!=r['bytes']:raise ValueError('file size/type mismatch: '+str(rel))
+  h=hashlib.sha256()
+  with path.open('rb') as f:
+   for block in iter(lambda:f.read(1024*1024),b''):h.update(block)
+  if h.hexdigest()!=r['sha256']:raise ValueError('checksum mismatch: '+str(rel))
+ count+=1
+print(json.dumps({'verified_files':count,'status':'checksum_verified_not_experiment_complete'}))