Download data_dictionary.csv from ichorbio/biosimilar-reference-database: direct link, hf CLI and curl.
- Browser
- Download file 2.94 kB
-
https://huggingface.co/datasets/ichorbio/biosimilar-reference-database/resolve/main/data_dictionary.csv
- Command line
-
hf download hf://datasets/ichorbio/biosimilar-reference-database/data_dictionary.csv
-
curl -L -o data_dictionary.csv https://huggingface.co/datasets/ichorbio/biosimilar-reference-database/resolve/main/data_dictionary.csv
2.94 kB
| table,field,type,unit,definition,allowed_values | |
| antibodies,entry_id,string,,Permanent database ID for one molecule (never reused), | |
| antibodies,inn,string,,WHO International Nonproprietary Name (lower case), | |
| antibodies,target,string,,Antigen the antibody binds, | |
| antibodies,target_uniprot,string,,UniProt accession of the target, | |
| antibodies,format,string,,Antibody format / architecture, | |
| antibodies,isotype,string,,Heavy-chain isotype + light chain, | |
| antibodies,host,string,,Host / species origin, | |
| antibodies,expression_system,string,,Recombinant expression system,CHO / HEK293 / ... | |
| antibodies,fc_modification,string,,Fc engineering if any,none / LALA / ... | |
| antibodies,heavy_chain_aa,string,,Heavy chain amino-acid sequence (single letter), | |
| antibodies,light_chain_aa,string,,Light chain amino-acid sequence (single letter), | |
| antibodies,sequence_source,string,,Where the sequence came from,IMGT/mAb-DB | |
| antibodies,imgt_url,url,,IMGT mAb-DB cross-reference, | |
| antibodies,thera_sabdab_url,url,,Thera-SAbDab cross-reference, | |
| antibodies,product_sku,string,,ichorbio catalogue number, | |
| antibodies,product_url,url,,ichorbio product page, | |
| antibodies,rrid,string,,Antibody Registry RRID,AB_xxxxxxx | |
| samples,sample_id,string,,ID for one physical lot tested, | |
| samples,entry_id,string,,Links to antibodies.entry_id, | |
| samples,sample_type,enum,,Sample type,biosimilar / comparator | |
| samples,lot_number,string,,Supplier lot number, | |
| samples,supplier_of_record,string,,Supplier of record for the lot (ichorbio for our products), | |
| samples,buffer,string,,Formulation / buffer, | |
| samples,concentration_mg_ml,number,mg/mL,Protein concentration, | |
| samples,date_received,date,,Date the lot was received, | |
| methods,method_id,string,,"ID for one assay protocol (new id per change, never edited)", | |
| methods,assay,string,,Assay name,DSF / SEC-HPLC / HIC-HPLC / AC-SINS / PSR / computed | |
| methods,instrument,string,,Instrument or 'computed', | |
| methods,protocol_version,string,,Protocol / method version, | |
| methods,notes,string,,Free text, | |
| measurements,measurement_id,string,,ID for one value, | |
| measurements,sample_id,string,,Links to samples.sample_id, | |
| measurements,method_id,string,,Links to methods.method_id, | |
| measurements,parameter,enum,,What was measured,mw_kda / theoretical_pi / tm1 / tm_onset / tagg / pct_monomer / hic_retention_time / acsins_delta_lambda_max / psr_score | |
| measurements,value,number,per parameter,The value, | |
| measurements,unit,string,,Unit of the value,kDa / pH units / degC / % / min / nm / score | |
| measurements,replicate_n,number,,Number of replicates, | |
| measurements,sd,number,,Standard deviation, | |
| measurements,measured_on,date,,Date measured, | |
| measurements,raw_file,path,,Path to the raw trace (CSV) under raw/, | |
| measurements,first_version,string,,Release this value first appeared in, | |
| measurements,last_changed_version,string,,Release this value last changed in, | |
| measurements,notes,string,,"Free text, e.g. a superseded value", | |