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imageomics
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ToL-EDA

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EDA
imageomics
biology
rare-species
plants
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12
ToL-EDA

Commit History

  1. Add file with all license info from commit 4886e4df catalog-media

    egrace479
    6e6c697

  2. Add licenses file to LFS tracking

    egrace479
    1102c88

  3. Add file with merged catalog and media manifest, missing owners added.

    egrace479
    4886e4d

  1. Update to accept snakecase license_name for futher compatibility.

    egrace479
    7f010b4

  1. Add printout of licenses that don't have URL.

    egrace479
    894279b

  1. Add script to generate licenses.csv file by adding license URLs to media catalog files.

    egrace479
    d073923

  2. Add script to match EOL citation data and missing owners to catalog.

    egrace479
    71ad5b4

  1. Makes file with media manifest content IDs not in predicted catalog for MD5 checks.⁠

    egrace479
    137ddb8

  2. File with all (July 26) media manifest content IDs that aren't matching to content IDs in predicted catalog.

    egrace479
    d6d52e2

  1. Add file with all images that are duplicated (their Medium Source URLs match, but other identifiers are distinct).

    egrace479
    fdd8762

  2. Notebooks to explore mismatch between catalog files and media manifest they should represent.

    egrace479
    3b830cd

  1. We may have a content/page ID mismatch.

    egrace479
    006fd75

  2. Update file paths to match data move and read in EOL content/page ID cols as ints.

    egrace479
    47d9dec

  3. Move EOL-related files to designated subfolder of data.

    egrace479
    92c254d

  4. Update gitattributes for lfs tracking of eol files in new folder.

    egrace479
    a5c5a3b

  1. Make manifests of missing pages

    egrace479
    25b0a71

  2. Add data files with page IDs and all associated URLs for missing content IDs.

    egrace479
    36a5e0c

  3. Add manifest of pages with missing content IDs from jul26 and dec6 to git lfs storage.

    egrace479
    dfe6af4

  1. ToL IDs with taxa, content IDs and completely missing page IDs (152 not in the newer Dec6 manifest).

    egrace479
    cea523f

  2. ToL IDs with taxa and number of missing content IDs per page id, content ID included is just the first instance of such a content ID.

    egrace479
    7e9bac0

  3. Explore content of newer media manifest (Dec. 6 download in EOL repo) and compare earlier media manifest.

    egrace479
    5b076b7

  4. Merge and organize git lfs files.

    egrace479
    4ae804b

  5. v3.3 update visualizations (#4)⁠

    egrace479
    ba08ee6

  1. Compare content IDs from Media Cargo (all downloaded images).

    egrace479
    e397019

  2. Merge branch 'main' of https://huggingface.co/datasets/imageomics/ToL-EDA into pr/5

    egrace479
    43b69c1

  3. v3.3 Dataset Diversity Overlap Analysis (#6)⁠

    egrace479
    9106add

  4. Distinguish EOL source data files in gitattributes.

    egrace479
    9d0ed02

  5. Add data files with missing content IDs to git lfs tracking.

    egrace479
    92f6e15

  6. Add list of cargo filenames broken down into constituents of Content ID, Page ID, and URL Type

    thompsonmj
    2343c14

  1. Add data files with missing content IDs, one with taxa info too.

    egrace479
    401f68a

  2. Look at some of the taxa distribution of images missing from the media manifest.

    egrace479
    a4ef293

  3. Confirmed that content IDs that don't match to media manifest are in both TreeOfLife-10M and Rare Species datasets.

    egrace479
    6f0d6b9

  4. Check media manifests from July 6 and 26 to confirm coverage of all listed images; 113K missing link to media manifest.

    egrace479
    f3017f6

  1. Add file with all media manifest images that are missing Copyright Owner information for matching with info from Jen.

    egrace479
    a057b25

  1. Remove train_small duplication and add file indicating images missing owner of licenses.

    egrace479
    6d5e52c

  2. Add LFS tracking for missing owner csv

    egrace479
    89ff05b

  3. Analysis of EOL license file, missing content and some missing licenses.

    egrace479
    323cb24

  4. Add EOL license file Sam generated.

    egrace479
    018307d

  1. Generate csv to store license files for all predicted images in dataset from EOL. This will include Rare Species as well.

    egrace479
    8438146

  2. Track large license file with LFS.

    egrace479
    b5e8a68

  1. v3.3 EDA update (#3)⁠

    egrace479
    5260e84

  1. v3.2 EDA Update (#2)⁠

    egrace479
    31d67c3

  1. Updated EDA (#1)⁠

    egrace479
    32f87ad

  1. Smaller CSV for testing taxa check script.

    egrace479
    5ebac92

  1. Merge branch 'main' of https://huggingface.co/datasets/imageomics/ToL-EDA

    egrace479
    86ba324

  2. Updated count information to include all values that should show up as warnings when running check_taxa.

    egrace479
    ca52b5d

  3. Add yaml metadata to reduce warnings

    egrace479
    e5a54db

  4. Generated CSV for testing check_taxa script (auto-check for filled-in taxonomic hierarchy).

    egrace479
    2b1d4ae

  1. Add visuals generated of the dataset distributions for paper (phyla-focused) and histograms of other taxa.

    egrace479
    219f8f3

  2. Add notebooks analyzing the dataset contents, taxa distributions, etc. and generating visualizations.

    egrace479
    08df06d