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import pytest
import openpnm as op
class ProjectTest:
def setup_class(self):
self.ws = op.Workspace()
self.ws.clear()
self.net = op.network.Cubic(shape=[2, 2, 2])
self.proj = self.net.project
self.phase1 = op.phase.Phase(network=self.net)
self.phase2 = op.phase.Phase(network=self.net)
def test_change_project_name_by_assignment(self):
proj = self.ws.new_project()
new_name = self.ws._validate_name()
proj.name = new_name
assert proj.name == new_name
assert proj.name in self.ws.keys()
def test_object_naming(self):
pn = op.network.Cubic([3, 3, 3], name='bob')
proj = pn.project
assert 'bob' in proj.names
def test_get_locations(self):
pn = op.network.Cubic([3, 3, 3], name='bob')
air = op.phase.Air(network=pn)
assert air.project._get_locations('pore.left').sum() == 9
assert pn.project._get_locations('pore.left').sum() == 9
with pytest.raises(KeyError):
air.project._get_locations('pore.foo')
# def test_change_simulation_name_by_moving_in_dict(self):
# proj = self.ws.new_project()
# old_name = proj.name
# new_name = self.ws._validate_name()
# self.ws[new_name] = proj
# assert proj.name == new_name
# assert proj.name in self.ws.keys()
# assert old_name not in self.ws.keys()
# def test_grid_access(self):
# g = self.proj.grid
# with pytest.raises(ValueError):
# g.col(self.geo1.name)
# r = g.row(self.geo1.name)
# assert r == ['geo_01', 'phys_01', 'phys_03']
# with pytest.raises(ValueError):
# g.row(self.phase1.name)
# c = g.col(self.phase1.name)
# assert c == ['phase_01', 'phys_01', 'phys_02']
# c = g.col(self.phase2.name)
# assert c == ['phase_02', 'phys_03', 'phys_04']
# def test_projectgrid_access(self):
# g = self.proj.grid
# geoms = g.geometries()
# assert geoms == ['geo_01', 'geo_02']
# phases = g.phases()
# assert phases == ['phase_01', 'phase_02']
# def test_purge_geom_shallow(self):
# proj = self.ws.copy_project(self.net.project)
# net = proj.network
# geo1 = proj.geometries()['geo_01']
# geo2 = proj.geometries()['geo_02']
# # Show that geo1 is present to start with
# assert 'pore.' + geo1.name in net.keys()
# assert 'throat.' + geo1.name in net.keys()
# proj.purge_object(geo1)
# assert geo1 not in proj
# # Ensure geo1 is gone
# assert 'pore.' + geo1.name not in net.keys()
# assert 'throat.' + geo1.name not in net.keys()
# # Check that geo2 is stil there
# assert 'pore.' + geo2.name in net.keys()
# assert 'throat.' + geo2.name in net.keys()
# self.ws.close_project(proj)
# def test_purge_geom_deep(self):
# proj = self.ws.copy_project(self.net.project)
# geo1 = proj.geometries()['geo_01']
# geo2 = proj.geometries()['geo_02']
# phys11 = proj.physics()['phys_01']
# phys12 = proj.physics()['phys_02']
# phys21 = proj.physics()['phys_03']
# phys22 = proj.physics()['phys_04']
# proj.purge_object(geo1, deep=True)
# assert geo1 not in proj
# assert geo2 in proj
# assert phys11 not in proj
# assert phys12 in proj
# assert phys21 not in proj
# assert phys22 in proj
# self.ws.close_project(proj)
# def test_purge_phys_shallow(self):
# proj = self.ws.copy_project(self.net.project)
# phase = proj.phases()['phase_01']
# phys1 = proj.physics()['phys_01']
# # Show that geo1 is present to start with
# assert 'pore.' + phys1.name in phase.keys()
# assert 'throat.' + phys1.name in phase.keys()
# proj.purge_object(phys1)
# assert phys1 not in proj
# # Ensure geo1 is gone
# assert 'pore.' + phys1.name not in phase.keys()
# assert 'throat.' + phys1.name not in phase.keys()
# self.ws.close_project(proj)
#
# def test_purge_phase_shallow(self):
# proj = self.ws.copy_project(self.net.project)
# phase = proj.phases()['phase_01']
# phys1 = proj.physics()['phys_01']
# phys2 = proj.physics()['phys_02']
# proj.purge_object(phase)
# assert phase not in proj
# assert phys1 in proj
# assert phys2 in proj
# self.ws.close_project(proj)
# def test_purge_phase_deep(self):
# proj = self.ws.copy_project(self.net.project)
# phase1 = proj.phases()['phase_01']
# phase2 = proj.phases()['phase_02']
# phys11 = proj.physics()['phys_01']
# phys12 = proj.physics()['phys_02']
# phys21 = proj.physics()['phys_03']
# phys22 = proj.physics()['phys_04']
# proj.purge_object(phase1, deep=True)
# assert phase1 not in proj
# assert phase2 in proj
# assert phys11 not in proj
# assert phys12 not in proj
# assert phys21 in proj
# assert phys22 in proj
# self.ws.close_project(proj)
# def test_purge_network(self):
# proj = self.ws.copy_project(self.net.project)
# net = proj.network
# with pytest.raises(Exception):
# proj.purge_object(net)
# self.ws.close_project(proj)
# def test_purge_list(self):
# proj = self.ws.copy_project(self.net.project)
# phase1 = proj.phases()['phase_01']
# phase2 = proj.phases()['phase_02']
# phys11 = proj.physics()['phys_01']
# phys12 = proj.physics()['phys_02']
# phys21 = proj.physics()['phys_03']
# phys22 = proj.physics()['phys_04']
# proj.purge_object([phase1, phys11, phys12], deep=False)
# assert phase1 not in proj
# assert phase2 in proj
# assert phys11 not in proj
# assert phys12 not in proj
# assert phys21 in proj
# assert phys22 in proj
# self.ws.close_project(proj)
# def test_append_second_network(self):
# proj = self.ws.copy_project(self.net.project)
# net = proj.network
# with pytest.raises(Exception):
# proj.append(net)
# def test_apend_non_openpnm_object(self):
# proj = self.ws.copy_project(self.net.project)
# with pytest.raises(Exception):
# proj.append(1)
def test_phases(self):
assert len(self.net.project.phases) == 2
# def test_find_phase_from_physics(self):
# proj = self.ws.copy_project(self.net.project)
# phys1 = proj.physics()['phys_01']
# phys2 = proj.physics()['phys_02']
# phase = proj.find_phase(phys1)
# assert 'pore.' + phys1.name in phase.keys()
# assert 'throat.' + phys1.name in phase.keys()
# phase = proj.find_phase(phys1)
# assert 'pore.' + phys2.name in phase.keys()
# assert 'throat.' + phys2.name in phase.keys()
# def test_find_phase_from_phase(self):
# phases = self.proj.phases
# a = self.proj.find_phase(phases[0])
# assert a is phases[0]
# def test_geometries(self):
# proj = self.ws.copy_project(self.net.project)
# geoms = proj.geometries()
# assert 'geo_01' in geoms.keys()
# assert 'geo_02' in geoms.keys()
# assert len(geoms.keys()) == 2
# def test_find_geometry(self):
# proj = self.ws.copy_project(self.net.project)
# phys1 = proj.physics()['phys_01']
# phys3 = proj.physics()['phys_03']
# geo1 = proj.find_geometry(phys1)
# assert geo1.Np == phys1.Np
# assert geo1.Nt == phys1.Nt
# # Make sure it finds same geometry
# assert proj.find_geometry(phys3) is geo1
# def test_physics(self):
# proj = self.ws.copy_project(self.net.project)
# physics = proj.physics()
# assert 'phys_01' in physics.keys()
# assert 'phys_02' in physics.keys()
# assert 'phys_03' in physics.keys()
# assert 'phys_04' in physics.keys()
# assert len(physics.keys()) == 4
# def test_find_physics_from_geometry(self):
# proj = self.proj
# geo1 = proj.geometries()['geo_01']
# phys1_2 = proj.find_physics(geometry=geo1)
# # Ensure two physics were returned
# assert len(phys1_2) == 2
# # Ensure None is not in list
# with pytest.raises(ValueError):
# phys1_2.remove(None)
# geo2 = proj.geometries()['geo_02']
# phys3_4 = proj.find_physics(geometry=geo2)
# assert phys3_4 != phys1_2
# def test_find_physics_from_phase_and_geometry(self):
# proj = self.proj
# geo1 = proj.geometries()['geo_01']
# geo2 = proj.geometries()['geo_02']
# phase1 = proj.phases()['phase_01']
# phase2 = proj.phases()['phase_02']
# phys1 = proj.find_physics(geometry=geo1, phase=phase1)
# phys2 = proj.find_physics(geometry=geo2, phase=phase1)
# phys3 = proj.find_physics(geometry=geo1, phase=phase2)
# phys4 = proj.find_physics(geometry=geo2, phase=phase2)
# # Ensure 4 unique physics were returned
# assert phys1 is not phys2
# assert phys2 is not phys3
# assert phys3 is not phys4
# def test_find_physics_from_phase(self):
# proj = self.proj
# phase1 = proj.phases()['phase_01']
# phase2 = proj.phases()['phase_02']
# physics1 = proj.find_physics(phase=phase1)
# physics2 = proj.find_physics(phase=phase2)
# assert len(physics1) == 2
# assert len(physics2) == 2
# # Make sure lists are mutually exclusive
# assert ~np.all([item in physics2 for item in physics1])
# def test_find_physics_no_phase_or_geometry(self):
# proj = self.proj
# a = proj.find_physics()
# b = proj.physics().values()
# assert np.all([item in b for item in a])
# def test_find_full_domain_geometry(self):
# proj = self.proj
# geo1 = proj.geometries()['geo_01']
# assert proj.find_full_domain(geo1)._isa() == 'network'
# def test_find_full_domain_physics(self):
# proj = self.proj
# phys1 = proj.physics()['phys_01']
# assert proj.find_full_domain(phys1)._isa() == 'phase'
# def test_find_full_domain_phase(self):
# proj = self.proj
# phase1 = proj.phases()['phase_01']
# assert proj.find_full_domain(phase1)._isa() == 'phase'
# def test_clear(self):
# proj = self.ws.copy_project(self.net.project)
# assert len(proj) == 3
# proj.clear(objtype=['phase'])
# assert len(proj) == 7
# proj.clear()
# assert len(proj) == 0
# def test_pop(self):
# proj = self.ws.copy_project(self.net.project)
# geo1 = proj.geometries()['geo_01']
# geo2 = proj.pop(1)
# assert geo1 is geo2
# assert geo1 not in proj
# def test_insert(self):
# proj = self.ws.copy_project(self.net.project)
# geo1 = proj.geometries()['geo_01']
# geo2 = proj.pop(1)
# assert geo1 is geo2
# assert geo1 not in proj
# proj.insert(1, geo2)
def test_copy(self):
proj = self.ws.copy_project(self.net.project)
proj.network.name = 'foo22'
proj2 = proj.copy()
assert proj.name != proj2.name
assert proj2.network.name == 'foo22'
assert proj is not proj2
assert len(proj) == len(proj2)
assert proj.names == proj2.names
def test_getitem(self):
a = self.proj[0]
b = self.proj[a.name]
assert a is b
# def test_save_and_load_object(self):
# proj = self.proj
# name = proj.network.name
# proj.save_object(proj.network)
# new_proj = self.ws.new_project()
# new_proj.load_object(name+'.net')
# assert new_proj.network.name == name
# try:
# os.remove(name+'.net')
# except PermissionError:
# print('Could not delete ' + name + '.net')
# def test_load_object_from_fixture(self):
# path = Path(os.path.realpath(__file__),
# '../../../fixtures/OpenPNM-Objects')
# filename = Path(path.resolve(), 'net_01.net')
# new_proj = self.ws.new_project()
# new_proj.load_object(filename)
# assert len(new_proj) == 1
# assert new_proj.network._isa('network')
# def test_export_data(self):
# fname = 'export_data_tests'
# self.proj.export_data(phases=self.phase1, filename=fname,
# filetype='vtk')
# os.remove(fname+'.vtp')
# self.proj.export_data(phases=self.phase1, filename=fname+'.vtk')
# os.remove(fname+'.vtp')
# self.proj.export_data(phases=self.phase1, filename=fname,
# filetype='csv')
# os.remove(fname+'.csv')
# self.proj.export_data(phases=self.phase1, filename=fname,
# filetype='xdmf')
# os.remove(fname+'.xmf')
# os.remove(fname+'.hdf')
# self.proj.export_data(phases=self.phase1, filename=fname,
# filetype='hdf5')
# os.remove(fname+'.hdf')
# self.proj.export_data(phases=self.phase1, filename=fname,
# filetype='mat')
# os.remove(fname+'.mat')
# with pytest.raises(Exception):
# self.proj.export_data(phases=self.phase1, filename=fname,
# filetype='blah')
# def test_inspect_pores_and_throats(self):
# df = self.proj.inspect_locations(element='pores', indices=[0, 2, 3])
# assert df.shape[1] == 3
# assert self.net.name + '.pore.coords_X' in df.index
# df = self.proj.inspect_locations(element='throats', indices=[0, 1, 3])
# assert df.shape[1] == 3
# assert self.net.name + '.throat.conns_head' in df.index
if __name__ == '__main__':
t = ProjectTest()
self = t
t.setup_class()
for item in t.__dir__():
if item.startswith('test'):
print(f"Running test: {item}")
t.__getattribute__(item)()
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