RASPA2 / data /src /inter_born.c
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/*************************************************************************************************************
The MIT License
Copyright (C) 2006-2019 David Dubbeldam, Sofia Calero, Thijs Vlugt, Donald E. Ellis, and Randall Q. Snurr.
D.Dubbeldam@uva.nl http://www.uva.nl/profiel/d/u/d.dubbeldam/d.dubbeldam.html
scaldia@upo.es http://www.upo.es/raspa/
t.j.h.vlugt@tudelft.nl http://homepage.tudelft.nl/v9k6y
don-ellis@northwestern.edu http://dvworld.northwestern.edu/
snurr@northwestern.edu http://zeolites.cqe.northwestern.edu/
Permission is hereby granted, free of charge, to any person
obtaining a copy of this software and associated documentation
files (the "Software"), to deal in the Software without
restriction, including without limitation the rights to use,
copy, modify, merge, publish, distribute, sublicense, and/or sell
copies of the Software, and to permit persons to whom the
Software is furnished to do so, subject to the following
conditions:
The above copyright notice and this permission notice shall be
included in all copies or substantial portions of the Software.
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES
OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT
HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
OTHER DEALINGS IN THE SOFTWARE.
**************************************************************************************************************/
#ifdef HAVE_CONFIG_H
#include <config.h>
#endif
#include <stdlib.h>
#include <stdio.h>
#include <math.h>
#include <string.h>
#include <sys/stat.h>
#include "constants.h"
#include "utils.h"
#include "simulation.h"
#include "potentials.h"
#include "output.h"
#include "molecule.h"
#include "framework.h"
#include "framework_energy.h"
#include "framework_force.h"
#include "grids.h"
#include "ewald.h"
#include "inter_energy.h"
#include "inter_force.h"
#include "cbmc.h"
#include "mc_moves.h"
#include "spectra.h"
void ComputeInterVDWBornTerm(void)
{
int I,J,i,j,ig,jg,ia,ja;
int typeA,typeB;
int TypeMolA,TypeMolB;
REAL rr;
REAL energy;
VECTOR posA,posB,dr;
VECTOR comA,comB;
REAL DF,DDF;
int RigidI,RigidJ;
VECTOR drJI,f;
REAL scalingA,scalingB;
// first loop over adsorbate molecules
for(I=0;I<NumberOfAdsorbateMolecules[CurrentSystem];I++)
{
TypeMolA=Adsorbates[CurrentSystem][I].Type;
for(ig=0;ig<Components[TypeMolA].NumberOfGroups;ig++)
{
RigidI=Components[TypeMolA].Groups[ig].Rigid;
for(ia=0;ia<Components[TypeMolA].Groups[ig].NumberOfGroupAtoms;ia++)
{
i=Components[TypeMolA].Groups[ig].Atoms[ia];
if(RigidI)
comA=Adsorbates[CurrentSystem][I].Groups[ig].CenterOfMassPosition;
else
comA=Adsorbates[CurrentSystem][I].Atoms[i].Position;
typeA=Adsorbates[CurrentSystem][I].Atoms[i].Type;
posA=Adsorbates[CurrentSystem][I].Atoms[i].Position;
scalingA=Adsorbates[CurrentSystem][I].Atoms[i].CFVDWScalingParameter;
if(!OmitAdsorbateAdsorbateVDWInteractions)
{
// second loop over adsorbates
for(J=I+1;J<NumberOfAdsorbateMolecules[CurrentSystem];J++)
{
TypeMolB=Adsorbates[CurrentSystem][J].Type;
for(jg=0;jg<Components[TypeMolB].NumberOfGroups;jg++)
{
RigidJ=Components[TypeMolB].Groups[jg].Rigid;
for(ja=0;ja<Components[TypeMolB].Groups[jg].NumberOfGroupAtoms;ja++)
{
j=Components[TypeMolB].Groups[jg].Atoms[ja];
if(RigidJ)
comB=Adsorbates[CurrentSystem][J].Groups[jg].CenterOfMassPosition;
else
comB=Adsorbates[CurrentSystem][J].Atoms[j].Position;
typeB=Adsorbates[CurrentSystem][J].Atoms[j].Type;
posB=Adsorbates[CurrentSystem][J].Atoms[j].Position;
scalingB=Adsorbates[CurrentSystem][J].Atoms[j].CFVDWScalingParameter;
dr.x=posA.x-posB.x;
dr.y=posA.y-posB.y;
dr.z=posA.z-posB.z;
dr=ApplyBoundaryCondition(dr);
rr=SQR(dr.x)+SQR(dr.y)+SQR(dr.z);
if(rr<CutOffVDWSquared)
{
PotentialSecondDerivative(typeA,typeB,rr,&energy,&DF,&DDF,scalingA*scalingB);
// add contribution to the energy
UAdsorbateAdsorbateVDW[CurrentSystem]+=energy;
f.x=DF*dr.x;
f.y=DF*dr.y;
f.z=DF*dr.z;
// add contribution to the first derivatives
Adsorbates[CurrentSystem][I].Atoms[i].Force.x-=f.x;
Adsorbates[CurrentSystem][I].Atoms[i].Force.y-=f.y;
Adsorbates[CurrentSystem][I].Atoms[i].Force.z-=f.z;
Adsorbates[CurrentSystem][J].Atoms[j].Force.x+=f.x;
Adsorbates[CurrentSystem][J].Atoms[j].Force.y+=f.y;
Adsorbates[CurrentSystem][J].Atoms[j].Force.z+=f.z;
// add contribution to the strain derivative tensor
StrainDerivativeTensor[CurrentSystem].ax+=f.x*dr.x;
StrainDerivativeTensor[CurrentSystem].bx+=f.y*dr.x;
StrainDerivativeTensor[CurrentSystem].cx+=f.z*dr.x;
StrainDerivativeTensor[CurrentSystem].ay+=f.x*dr.y;
StrainDerivativeTensor[CurrentSystem].by+=f.y*dr.y;
StrainDerivativeTensor[CurrentSystem].cy+=f.z*dr.y;
StrainDerivativeTensor[CurrentSystem].az+=f.x*dr.z;
StrainDerivativeTensor[CurrentSystem].bz+=f.y*dr.z;
StrainDerivativeTensor[CurrentSystem].cz+=f.z*dr.z;
VECTOR dJI;
dJI.x=(posB.x-comB.x)-(posA.x-comA.x);
dJI.y=(posB.y-comB.y)-(posA.y-comA.y);
dJI.z=(posB.z-comB.z)-(posA.z-comA.z);
// the corrected com-com distance vector
drJI.x=dr.x+(posB.x-comB.x)-(posA.x-comA.x);
drJI.y=dr.y+(posB.y-comB.y)-(posA.y-comA.y);
drJI.z=dr.z+(posB.z-comB.z)-(posA.z-comA.z);
// add the contributions to the Born-term
BornTerm[CurrentSystem].xxxx+=DDF*drJI.x*dr.x*drJI.x*dr.x+DF*drJI.x*dr.x+DF*drJI.x*drJI.x;
BornTerm[CurrentSystem].xxyy+=DDF*drJI.x*dr.x*drJI.y*dr.y;
BornTerm[CurrentSystem].xxzz+=DDF*drJI.x*dr.x*drJI.z*dr.z;
BornTerm[CurrentSystem].xxyz+=0.5*DDF*drJI.x*dr.x*(drJI.y*dr.z+drJI.z*dr.y);
BornTerm[CurrentSystem].xxzx+=0.5*DDF*drJI.x*dr.x*(drJI.x*dr.z+drJI.z*dr.x)+0.5*DF*(drJI.x*dJI.z)+DF*(drJI.x*dr.z);
BornTerm[CurrentSystem].xxxy+=0.5*DDF*drJI.x*dr.x*(drJI.x*dr.y+drJI.y*dr.x)+0.5*DF*(drJI.x*dJI.y)+DF*drJI.x*dr.y;
BornTerm[CurrentSystem].yyyy+=DDF*drJI.y*dr.y*dr.y*dr.y+2.0*DF*drJI.y*dr.y+DDF*drJI.y*dr.y*dJI.y*dr.y+DF*drJI.y*dJI.y;
BornTerm[CurrentSystem].yyzz+=0.5*DDF*(drJI.y*dr.y*dr.z*dr.z+dr.y*drJI.y*dr.z*dr.z)+0.5*DDF*drJI.y*dr.y*(dJI.z*dr.z+dJI.z*dr.z);
BornTerm[CurrentSystem].yyyz+=0.5*DDF*(drJI.y*dr.y*dr.y*dr.z+dr.y*drJI.y*dr.y*dr.z)+DF*(drJI.y*dr.z)+0.5*DDF*drJI.y*dr.y*(dJI.y*dr.z+dJI.z*dr.y)+0.5*DF*(drJI.y*dJI.z);
BornTerm[CurrentSystem].yyzx+=0.5*DDF*(drJI.x*dr.z*dr.y*dr.y+dr.x*drJI.z*dr.y*dr.y)+0.25*DDF*(drJI.x*dr.z+drJI.z*dr.x)*(dJI.y*dr.y+dJI.y*dr.y);
BornTerm[CurrentSystem].yyxy+=0.5*DDF*(drJI.x*dr.y*dr.y*dr.y+dr.x*drJI.y*dr.y*dr.y)+DF*(drJI.x*dr.y)+0.25*DDF*(drJI.x*dr.y+drJI.y*dr.x)*(dJI.y*dr.y+dJI.y*dr.y)+0.5*DF*(drJI.x*dJI.y);
BornTerm[CurrentSystem].zzzz+=DDF*drJI.z*dr.z*dr.z*dr.z+2.0*DF*drJI.z*dr.z+DDF*drJI.z*dr.z*dJI.z*dr.z+DF*drJI.z*dJI.z;
BornTerm[CurrentSystem].zzyz+=0.5*DDF*(drJI.y*dr.z*dr.z*dr.z+dr.y*drJI.z*dr.z*dr.z)+DF*(drJI.y*dr.z)+0.25*DDF*(drJI.y*dr.z+drJI.z*dr.y)*(dJI.z*dr.z+dJI.z*dr.z)+0.5*DF*(drJI.y*dJI.z);
BornTerm[CurrentSystem].zzzx+=0.5*DDF*(drJI.x*dr.z*dr.z*dr.z+dr.x*drJI.z*dr.z*dr.z)+DF*(drJI.x*dr.z)+0.25*DDF*(drJI.x*dr.z+drJI.z*dr.x)*(dJI.z*dr.z+dJI.z*dr.z)+0.5*DF*(drJI.x*dJI.z);
BornTerm[CurrentSystem].zzxy+=0.5*DDF*(drJI.x*dr.y*dr.z*dr.z+dr.x*drJI.y*dr.z*dr.z)+0.25*DDF*(drJI.x*dr.y+drJI.y*dr.x)*(dJI.z*dr.z+dJI.z*dr.z);
BornTerm[CurrentSystem].yzyz+=0.5*DDF*(drJI.y*dr.z*dr.y*dr.z+dr.y*drJI.z*dr.y*dr.z)+0.5*DF*(drJI.z*dr.z+drJI.y*dr.y)+0.25*DDF*(drJI.y*dr.z+drJI.z*dr.y)*(dJI.y*dr.z+dJI.z*dr.y)+0.25*DF*(drJI.z*dJI.z+drJI.y*dJI.y);
BornTerm[CurrentSystem].yzzx+=0.5*DDF*(drJI.x*dr.z*dr.y*dr.z+dr.x*drJI.z*dr.y*dr.z)+0.5*DF*(drJI.x*dr.y)+0.25*DDF*(drJI.x*dr.z+drJI.z*dr.x)*(dJI.y*dr.z+dJI.z*dr.y)+0.25*DF*(drJI.x*dJI.y);
BornTerm[CurrentSystem].yzxy+=0.5*DDF*(drJI.x*dr.y*dr.y*dr.z+dr.x*drJI.y*dr.y*dr.z)+0.5*DF*(drJI.x*dr.z)+0.25*DDF*(drJI.x*dr.y+drJI.y*dr.x)*(dJI.y*dr.z+dJI.z*dr.y)+0.25*DF*(drJI.x*dJI.z);
BornTerm[CurrentSystem].zxzx+=0.5*DDF*(drJI.x*dr.z*dr.x*dr.z+dr.x*drJI.z*dr.x*dr.z)+0.5*DF*(drJI.z*dr.z+drJI.x*dr.x)+0.25*DDF*(drJI.x*dr.z+drJI.z*dr.x)*(dJI.x*dr.z+dJI.z*dr.x)+0.25*DF*(drJI.z*dJI.z+drJI.x*dJI.x);
BornTerm[CurrentSystem].zxxy+=0.5*DDF*(drJI.x*dr.y*dr.x*dr.z+dr.x*drJI.y*dr.x*dr.z)+0.5*DF*(drJI.y*dr.z)+0.25*DDF*(drJI.x*dr.y+drJI.y*dr.x)*(dJI.x*dr.z+dJI.z*dr.x)+0.25*DF*(drJI.y*dJI.z);
BornTerm[CurrentSystem].xyxy+=0.5*DDF*(drJI.x*dr.y*dr.x*dr.y+dr.x*drJI.y*dr.x*dr.y)+0.5*DF*(drJI.y*dr.y+drJI.x*dr.x)+0.25*DDF*(drJI.x*dr.y+drJI.y*dr.x)*(dJI.x*dr.y+dJI.y*dr.x)+0.25*DF*(drJI.y*dJI.y+drJI.x*dJI.x);
}
}
}
}
}
// second loop over cations
if(!OmitAdsorbateCationVDWInteractions)
{
for(J=0;J<NumberOfCationMolecules[CurrentSystem];J++)
{
TypeMolB=Cations[CurrentSystem][J].Type;
for(jg=0;jg<Components[TypeMolB].NumberOfGroups;jg++)
{
RigidJ=Components[TypeMolB].Groups[jg].Rigid;
for(ja=0;ja<Components[TypeMolB].Groups[jg].NumberOfGroupAtoms;ja++)
{
j=Components[TypeMolB].Groups[jg].Atoms[ja];
if(RigidJ)
comB=Cations[CurrentSystem][J].Groups[jg].CenterOfMassPosition;
else
comB=Cations[CurrentSystem][J].Atoms[j].Position;
typeB=Cations[CurrentSystem][J].Atoms[j].Type;
posB=Cations[CurrentSystem][J].Atoms[j].Position;
scalingB=Adsorbates[CurrentSystem][J].Atoms[j].CFVDWScalingParameter;
dr.x=posA.x-posB.x;
dr.y=posA.y-posB.y;
dr.z=posA.z-posB.z;
dr=ApplyBoundaryCondition(dr);
rr=SQR(dr.x)+SQR(dr.y)+SQR(dr.z);
if(rr<CutOffVDWSquared)
{
PotentialSecondDerivative(typeA,typeB,rr,&energy,&DF,&DDF,scalingA*scalingB);
// add contribution to the energy
UAdsorbateCationVDW[CurrentSystem]+=energy;
f.x=DF*dr.x;
f.y=DF*dr.y;
f.z=DF*dr.z;
// add contribution to the first derivatives
Adsorbates[CurrentSystem][I].Atoms[i].Force.x-=f.x;
Adsorbates[CurrentSystem][I].Atoms[i].Force.y-=f.y;
Adsorbates[CurrentSystem][I].Atoms[i].Force.z-=f.z;
Cations[CurrentSystem][J].Atoms[j].Force.x+=f.x;
Cations[CurrentSystem][J].Atoms[j].Force.y+=f.y;
Cations[CurrentSystem][J].Atoms[j].Force.z+=f.z;
// add contribution to the strain derivative tensor
StrainDerivativeTensor[CurrentSystem].ax+=f.x*dr.x;
StrainDerivativeTensor[CurrentSystem].bx+=f.y*dr.x;
StrainDerivativeTensor[CurrentSystem].cx+=f.z*dr.x;
StrainDerivativeTensor[CurrentSystem].ay+=f.x*dr.y;
StrainDerivativeTensor[CurrentSystem].by+=f.y*dr.y;
StrainDerivativeTensor[CurrentSystem].cy+=f.z*dr.y;
StrainDerivativeTensor[CurrentSystem].az+=f.x*dr.z;
StrainDerivativeTensor[CurrentSystem].bz+=f.y*dr.z;
StrainDerivativeTensor[CurrentSystem].cz+=f.z*dr.z;
VECTOR dJI;
dJI.x=(posB.x-comB.x)-(posA.x-comA.x);
dJI.y=(posB.y-comB.y)-(posA.y-comA.y);
dJI.z=(posB.z-comB.z)-(posA.z-comA.z);
// the corrected com-com distance vector
drJI.x=dr.x+(posB.x-comB.x)-(posA.x-comA.x);
drJI.y=dr.y+(posB.y-comB.y)-(posA.y-comA.y);
drJI.z=dr.z+(posB.z-comB.z)-(posA.z-comA.z);
// add the contributions to the Born-term
BornTerm[CurrentSystem].xxxx+=DDF*drJI.x*dr.x*drJI.x*dr.x+DF*drJI.x*dr.x+DF*drJI.x*drJI.x;
BornTerm[CurrentSystem].xxyy+=DDF*drJI.x*dr.x*drJI.y*dr.y;
BornTerm[CurrentSystem].xxzz+=DDF*drJI.x*dr.x*drJI.z*dr.z;
BornTerm[CurrentSystem].xxyz+=0.5*DDF*drJI.x*dr.x*(drJI.y*dr.z+drJI.z*dr.y);
BornTerm[CurrentSystem].xxzx+=0.5*DDF*drJI.x*dr.x*(drJI.x*dr.z+drJI.z*dr.x)+0.5*DF*(drJI.x*dJI.z)+DF*(drJI.x*dr.z);
BornTerm[CurrentSystem].xxxy+=0.5*DDF*drJI.x*dr.x*(drJI.x*dr.y+drJI.y*dr.x)+0.5*DF*(drJI.x*dJI.y)+DF*drJI.x*dr.y;
BornTerm[CurrentSystem].yyyy+=DDF*drJI.y*dr.y*dr.y*dr.y+2.0*DF*drJI.y*dr.y+DDF*drJI.y*dr.y*dJI.y*dr.y+DF*drJI.y*dJI.y;
BornTerm[CurrentSystem].yyzz+=0.5*DDF*(drJI.y*dr.y*dr.z*dr.z+dr.y*drJI.y*dr.z*dr.z)+0.5*DDF*drJI.y*dr.y*(dJI.z*dr.z+dJI.z*dr.z);
BornTerm[CurrentSystem].yyyz+=0.5*DDF*(drJI.y*dr.y*dr.y*dr.z+dr.y*drJI.y*dr.y*dr.z)+DF*(drJI.y*dr.z)+0.5*DDF*drJI.y*dr.y*(dJI.y*dr.z+dJI.z*dr.y)+0.5*DF*(drJI.y*dJI.z);
BornTerm[CurrentSystem].yyzx+=0.5*DDF*(drJI.x*dr.z*dr.y*dr.y+dr.x*drJI.z*dr.y*dr.y)+0.25*DDF*(drJI.x*dr.z+drJI.z*dr.x)*(dJI.y*dr.y+dJI.y*dr.y);
BornTerm[CurrentSystem].yyxy+=0.5*DDF*(drJI.x*dr.y*dr.y*dr.y+dr.x*drJI.y*dr.y*dr.y)+DF*(drJI.x*dr.y)+0.25*DDF*(drJI.x*dr.y+drJI.y*dr.x)*(dJI.y*dr.y+dJI.y*dr.y)+0.5*DF*(drJI.x*dJI.y);
BornTerm[CurrentSystem].zzzz+=DDF*drJI.z*dr.z*dr.z*dr.z+2.0*DF*drJI.z*dr.z+DDF*drJI.z*dr.z*dJI.z*dr.z+DF*drJI.z*dJI.z;
BornTerm[CurrentSystem].zzyz+=0.5*DDF*(drJI.y*dr.z*dr.z*dr.z+dr.y*drJI.z*dr.z*dr.z)+DF*(drJI.y*dr.z)+0.25*DDF*(drJI.y*dr.z+drJI.z*dr.y)*(dJI.z*dr.z+dJI.z*dr.z)+0.5*DF*(drJI.y*dJI.z);
BornTerm[CurrentSystem].zzzx+=0.5*DDF*(drJI.x*dr.z*dr.z*dr.z+dr.x*drJI.z*dr.z*dr.z)+DF*(drJI.x*dr.z)+0.25*DDF*(drJI.x*dr.z+drJI.z*dr.x)*(dJI.z*dr.z+dJI.z*dr.z)+0.5*DF*(drJI.x*dJI.z);
BornTerm[CurrentSystem].zzxy+=0.5*DDF*(drJI.x*dr.y*dr.z*dr.z+dr.x*drJI.y*dr.z*dr.z)+0.25*DDF*(drJI.x*dr.y+drJI.y*dr.x)*(dJI.z*dr.z+dJI.z*dr.z);
BornTerm[CurrentSystem].yzyz+=0.5*DDF*(drJI.y*dr.z*dr.y*dr.z+dr.y*drJI.z*dr.y*dr.z)+0.5*DF*(drJI.z*dr.z+drJI.y*dr.y)+0.25*DDF*(drJI.y*dr.z+drJI.z*dr.y)*(dJI.y*dr.z+dJI.z*dr.y)+0.25*DF*(drJI.z*dJI.z+drJI.y*dJI.y);
BornTerm[CurrentSystem].yzzx+=0.5*DDF*(drJI.x*dr.z*dr.y*dr.z+dr.x*drJI.z*dr.y*dr.z)+0.5*DF*(drJI.x*dr.y)+0.25*DDF*(drJI.x*dr.z+drJI.z*dr.x)*(dJI.y*dr.z+dJI.z*dr.y)+0.25*DF*(drJI.x*dJI.y);
BornTerm[CurrentSystem].yzxy+=0.5*DDF*(drJI.x*dr.y*dr.y*dr.z+dr.x*drJI.y*dr.y*dr.z)+0.5*DF*(drJI.x*dr.z)+0.25*DDF*(drJI.x*dr.y+drJI.y*dr.x)*(dJI.y*dr.z+dJI.z*dr.y)+0.25*DF*(drJI.x*dJI.z);
BornTerm[CurrentSystem].zxzx+=0.5*DDF*(drJI.x*dr.z*dr.x*dr.z+dr.x*drJI.z*dr.x*dr.z)+0.5*DF*(drJI.z*dr.z+drJI.x*dr.x)+0.25*DDF*(drJI.x*dr.z+drJI.z*dr.x)*(dJI.x*dr.z+dJI.z*dr.x)+0.25*DF*(drJI.z*dJI.z+drJI.x*dJI.x);
BornTerm[CurrentSystem].zxxy+=0.5*DDF*(drJI.x*dr.y*dr.x*dr.z+dr.x*drJI.y*dr.x*dr.z)+0.5*DF*(drJI.y*dr.z)+0.25*DDF*(drJI.x*dr.y+drJI.y*dr.x)*(dJI.x*dr.z+dJI.z*dr.x)+0.25*DF*(drJI.y*dJI.z);
BornTerm[CurrentSystem].xyxy+=0.5*DDF*(drJI.x*dr.y*dr.x*dr.y+dr.x*drJI.y*dr.x*dr.y)+0.5*DF*(drJI.y*dr.y+drJI.x*dr.x)+0.25*DDF*(drJI.x*dr.y+drJI.y*dr.x)*(dJI.x*dr.y+dJI.y*dr.x)+0.25*DF*(drJI.y*dJI.y+drJI.x*dJI.x);
}
}
}
}
}
}
}
}
if(!OmitCationCationVDWInteractions)
{
// first loop over cation molecules
for(I=0;I<NumberOfCationMolecules[CurrentSystem];I++)
{
TypeMolA=Cations[CurrentSystem][I].Type;
for(ig=0;ig<Components[TypeMolA].NumberOfGroups;ig++)
{
RigidI=Components[TypeMolA].Groups[ig].Rigid;
for(ia=0;ia<Components[TypeMolA].Groups[ig].NumberOfGroupAtoms;ia++)
{
i=Components[TypeMolA].Groups[ig].Atoms[ia];
if(RigidI)
comA=Cations[CurrentSystem][I].Groups[ig].CenterOfMassPosition;
else
comA=Cations[CurrentSystem][I].Atoms[i].Position;
typeA=Cations[CurrentSystem][I].Atoms[i].Type;
posA=Cations[CurrentSystem][I].Atoms[i].Position;
scalingA=Cations[CurrentSystem][I].Atoms[i].CFVDWScalingParameter;
// second loop over cation
for(J=I+1;J<NumberOfCationMolecules[CurrentSystem];J++)
{
TypeMolB=Cations[CurrentSystem][J].Type;
for(jg=0;jg<Components[TypeMolB].NumberOfGroups;jg++)
{
RigidJ=Components[TypeMolB].Groups[jg].Rigid;
for(ja=0;ja<Components[TypeMolB].Groups[jg].NumberOfGroupAtoms;ja++)
{
j=Components[TypeMolB].Groups[jg].Atoms[ja];
if(RigidJ)
comB=Cations[CurrentSystem][J].Groups[jg].CenterOfMassPosition;
else
comB=Cations[CurrentSystem][J].Atoms[j].Position;
typeB=Cations[CurrentSystem][J].Atoms[j].Type;
posB=Cations[CurrentSystem][J].Atoms[j].Position;
dr.x=posA.x-posB.x;
dr.y=posA.y-posB.y;
dr.z=posA.z-posB.z;
dr=ApplyBoundaryCondition(dr);
rr=SQR(dr.x)+SQR(dr.y)+SQR(dr.z);
if(rr<CutOffVDWSquared)
{
scalingB=Adsorbates[CurrentSystem][J].Atoms[j].CFVDWScalingParameter;
PotentialSecondDerivative(typeA,typeB,rr,&energy,&DF,&DDF,scalingA*scalingB);
// add contribution to the energy
UCationCationVDW[CurrentSystem]+=energy;
f.x=DF*dr.x;
f.y=DF*dr.y;
f.z=DF*dr.z;
// add contribution to the first derivatives
Cations[CurrentSystem][I].Atoms[i].Force.x-=f.x;
Cations[CurrentSystem][I].Atoms[i].Force.y-=f.y;
Cations[CurrentSystem][I].Atoms[i].Force.z-=f.z;
Cations[CurrentSystem][J].Atoms[j].Force.x+=f.x;
Cations[CurrentSystem][J].Atoms[j].Force.y+=f.y;
Cations[CurrentSystem][J].Atoms[j].Force.z+=f.z;
// add contribution to the strain derivative tensor
StrainDerivativeTensor[CurrentSystem].ax+=f.x*dr.x;
StrainDerivativeTensor[CurrentSystem].bx+=f.y*dr.x;
StrainDerivativeTensor[CurrentSystem].cx+=f.z*dr.x;
StrainDerivativeTensor[CurrentSystem].ay+=f.x*dr.y;
StrainDerivativeTensor[CurrentSystem].by+=f.y*dr.y;
StrainDerivativeTensor[CurrentSystem].cy+=f.z*dr.y;
StrainDerivativeTensor[CurrentSystem].az+=f.x*dr.z;
StrainDerivativeTensor[CurrentSystem].bz+=f.y*dr.z;
StrainDerivativeTensor[CurrentSystem].cz+=f.z*dr.z;
VECTOR dJI;
dJI.x=(posB.x-comB.x)-(posA.x-comA.x);
dJI.y=(posB.y-comB.y)-(posA.y-comA.y);
dJI.z=(posB.z-comB.z)-(posA.z-comA.z);
// the corrected com-com distance vector
drJI.x=dr.x+(posB.x-comB.x)-(posA.x-comA.x);
drJI.y=dr.y+(posB.y-comB.y)-(posA.y-comA.y);
drJI.z=dr.z+(posB.z-comB.z)-(posA.z-comA.z);
// add the contributions to the Born-term
BornTerm[CurrentSystem].xxxx+=DDF*drJI.x*dr.x*dr.x*dr.x+2.0*DF*drJI.x*dr.x+DDF*drJI.x*dr.x*dJI.x*dr.x+DF*drJI.x*dJI.x;
BornTerm[CurrentSystem].xxyy+=DDF*drJI.x*dr.x*dr.y*dr.y+0.5*DDF*drJI.x*dr.x*(dJI.y*dr.y+dJI.y*dr.y);
BornTerm[CurrentSystem].xxzz+=DDF*drJI.x*dr.x*dr.z*dr.z+0.5*DDF*drJI.x*dr.x*(dJI.z*dr.z+dJI.z*dr.z);
BornTerm[CurrentSystem].xxyz+=DDF*drJI.x*dr.x*dr.y*dr.z+0.5*DDF*drJI.x*dr.x*(dJI.y*dr.z+dJI.z*dr.y);
BornTerm[CurrentSystem].xxzx+=DDF*drJI.x*dr.x*dr.x*dr.z+DF*(drJI.x*dr.z)+0.5*DDF*drJI.x*dr.x*(dJI.x*dr.z+dJI.z*dr.x)+0.5*DF*(drJI.x*dJI.z);
BornTerm[CurrentSystem].xxxy+=DDF*drJI.x*dr.x*dr.x*dr.y+DF*drJI.x*dr.y+0.5*DDF*drJI.x*dr.x*(dJI.x*dr.y+dJI.y*dr.x)+0.5*DF*(drJI.x*dJI.y);
BornTerm[CurrentSystem].yyyy+=DDF*drJI.y*dr.y*dr.y*dr.y+2.0*DF*drJI.y*dr.y+DDF*drJI.y*dr.y*dJI.y*dr.y+DF*drJI.y*dJI.y;
BornTerm[CurrentSystem].yyzz+=0.5*DDF*(drJI.y*dr.y*dr.z*dr.z+dr.y*drJI.y*dr.z*dr.z)+0.5*DDF*drJI.y*dr.y*(dJI.z*dr.z+dJI.z*dr.z);
BornTerm[CurrentSystem].yyyz+=0.5*DDF*(drJI.y*dr.y*dr.y*dr.z+dr.y*drJI.y*dr.y*dr.z)+DF*(drJI.y*dr.z)+0.5*DDF*drJI.y*dr.y*(dJI.y*dr.z+dJI.z*dr.y)+0.5*DF*(drJI.y*dJI.z);
BornTerm[CurrentSystem].yyzx+=0.5*DDF*(drJI.x*dr.z*dr.y*dr.y+dr.x*drJI.z*dr.y*dr.y)+0.25*DDF*(drJI.x*dr.z+drJI.z*dr.x)*(dJI.y*dr.y+dJI.y*dr.y);
BornTerm[CurrentSystem].yyxy+=0.5*DDF*(drJI.x*dr.y*dr.y*dr.y+dr.x*drJI.y*dr.y*dr.y)+DF*(drJI.x*dr.y)+0.25*DDF*(drJI.x*dr.y+drJI.y*dr.x)*(dJI.y*dr.y+dJI.y*dr.y)+0.5*DF*(drJI.x*dJI.y);
BornTerm[CurrentSystem].zzzz+=DDF*drJI.z*dr.z*dr.z*dr.z+2.0*DF*drJI.z*dr.z+DDF*drJI.z*dr.z*dJI.z*dr.z+DF*drJI.z*dJI.z;
BornTerm[CurrentSystem].zzyz+=0.5*DDF*(drJI.y*dr.z*dr.z*dr.z+dr.y*drJI.z*dr.z*dr.z)+DF*(drJI.y*dr.z)+0.25*DDF*(drJI.y*dr.z+drJI.z*dr.y)*(dJI.z*dr.z+dJI.z*dr.z)+0.5*DF*(drJI.y*dJI.z);
BornTerm[CurrentSystem].zzzx+=0.5*DDF*(drJI.x*dr.z*dr.z*dr.z+dr.x*drJI.z*dr.z*dr.z)+DF*(drJI.x*dr.z)+0.25*DDF*(drJI.x*dr.z+drJI.z*dr.x)*(dJI.z*dr.z+dJI.z*dr.z)+0.5*DF*(drJI.x*dJI.z);
BornTerm[CurrentSystem].zzxy+=0.5*DDF*(drJI.x*dr.y*dr.z*dr.z+dr.x*drJI.y*dr.z*dr.z)+0.25*DDF*(drJI.x*dr.y+drJI.y*dr.x)*(dJI.z*dr.z+dJI.z*dr.z);
BornTerm[CurrentSystem].yzyz+=0.5*DDF*(drJI.y*dr.z*dr.y*dr.z+dr.y*drJI.z*dr.y*dr.z)+0.5*DF*(drJI.z*dr.z+drJI.y*dr.y)+0.25*DDF*(drJI.y*dr.z+drJI.z*dr.y)*(dJI.y*dr.z+dJI.z*dr.y)+0.25*DF*(drJI.z*dJI.z+drJI.y*dJI.y);
BornTerm[CurrentSystem].yzzx+=0.5*DDF*(drJI.x*dr.z*dr.y*dr.z+dr.x*drJI.z*dr.y*dr.z)+0.5*DF*(drJI.x*dr.y)+0.25*DDF*(drJI.x*dr.z+drJI.z*dr.x)*(dJI.y*dr.z+dJI.z*dr.y)+0.25*DF*(drJI.x*dJI.y);
BornTerm[CurrentSystem].yzxy+=0.5*DDF*(drJI.x*dr.y*dr.y*dr.z+dr.x*drJI.y*dr.y*dr.z)+0.5*DF*(drJI.x*dr.z)+0.25*DDF*(drJI.x*dr.y+drJI.y*dr.x)*(dJI.y*dr.z+dJI.z*dr.y)+0.25*DF*(drJI.x*dJI.z);
BornTerm[CurrentSystem].zxzx+=0.5*DDF*(drJI.x*dr.z*dr.x*dr.z+dr.x*drJI.z*dr.x*dr.z)+0.5*DF*(drJI.z*dr.z+drJI.x*dr.x)+0.25*DDF*(drJI.x*dr.z+drJI.z*dr.x)*(dJI.x*dr.z+dJI.z*dr.x)+0.25*DF*(drJI.z*dJI.z+drJI.x*dJI.x);
BornTerm[CurrentSystem].zxxy+=0.5*DDF*(drJI.x*dr.y*dr.x*dr.z+dr.x*drJI.y*dr.x*dr.z)+0.5*DF*(drJI.y*dr.z)+0.25*DDF*(drJI.x*dr.y+drJI.y*dr.x)*(dJI.x*dr.z+dJI.z*dr.x)+0.25*DF*(drJI.y*dJI.z);
BornTerm[CurrentSystem].xyxy+=0.5*DDF*(drJI.x*dr.y*dr.x*dr.y+dr.x*drJI.y*dr.x*dr.y)+0.5*DF*(drJI.y*dr.y+drJI.x*dr.x)+0.25*DDF*(drJI.x*dr.y+drJI.y*dr.x)*(dJI.x*dr.y+dJI.y*dr.x)+0.25*DF*(drJI.y*dJI.y+drJI.x*dJI.x);
}
}
}
}
}
}
}
}
}
void ComputeInterChargeChargeBornTerm(void)
{
int I,J,i,j,ig,jg,ia,ja;
int typeA,typeB;
int TypeMolA,TypeMolB;
REAL rr,energy;
REAL chargeA,chargeB;
VECTOR posA,posB,dr;
VECTOR comA,comB;
REAL DF,DDF;
int RigidI,RigidJ;
VECTOR drJI,f;
if(ChargeMethod==NONE) return;
// first loop over adsorbate molecules
for(I=0;I<NumberOfAdsorbateMolecules[CurrentSystem];I++)
{
TypeMolA=Adsorbates[CurrentSystem][I].Type;
for(ig=0;ig<Components[TypeMolA].NumberOfGroups;ig++)
{
RigidI=Components[TypeMolA].Groups[ig].Rigid;
for(ia=0;ia<Components[TypeMolA].Groups[ig].NumberOfGroupAtoms;ia++)
{
i=Components[TypeMolA].Groups[ig].Atoms[ia];
if(RigidI)
comA=Adsorbates[CurrentSystem][I].Groups[ig].CenterOfMassPosition;
else
comA=Adsorbates[CurrentSystem][I].Atoms[i].Position;
typeA=Adsorbates[CurrentSystem][I].Atoms[i].Type;
chargeA=Adsorbates[CurrentSystem][I].Atoms[i].Charge;
posA=Adsorbates[CurrentSystem][I].Atoms[i].Position;
if(!OmitAdsorbateAdsorbateCoulombInteractions)
{
// second loop over adsorbates
for(J=I+1;J<NumberOfAdsorbateMolecules[CurrentSystem];J++)
{
TypeMolB=Adsorbates[CurrentSystem][J].Type;
for(jg=0;jg<Components[TypeMolB].NumberOfGroups;jg++)
{
RigidJ=Components[TypeMolB].Groups[jg].Rigid;
for(ja=0;ja<Components[TypeMolB].Groups[jg].NumberOfGroupAtoms;ja++)
{
j=Components[TypeMolB].Groups[jg].Atoms[ja];
if(RigidJ)
comB=Adsorbates[CurrentSystem][J].Groups[jg].CenterOfMassPosition;
else
comB=Adsorbates[CurrentSystem][J].Atoms[j].Position;
typeB=Adsorbates[CurrentSystem][J].Atoms[j].Type;
chargeB=Adsorbates[CurrentSystem][J].Atoms[j].Charge;
posB=Adsorbates[CurrentSystem][J].Atoms[j].Position;
dr.x=posA.x-posB.x;
dr.y=posA.y-posB.y;
dr.z=posA.z-posB.z;
dr=ApplyBoundaryCondition(dr);
rr=SQR(dr.x)+SQR(dr.y)+SQR(dr.z);
if(rr<CutOffChargeChargeSquared[CurrentSystem])
{
PotentialSecondDerivativeCoulombic(chargeA,chargeB,rr,&energy,&DF,&DDF);
UAdsorbateAdsorbateChargeChargeReal[CurrentSystem]+=energy;
f.x=DF*dr.x;
f.y=DF*dr.y;
f.z=DF*dr.z;
// add contribution to the first derivatives
Adsorbates[CurrentSystem][I].Atoms[i].Force.x-=f.x;
Adsorbates[CurrentSystem][I].Atoms[i].Force.y-=f.y;
Adsorbates[CurrentSystem][I].Atoms[i].Force.z-=f.z;
Adsorbates[CurrentSystem][J].Atoms[j].Force.x+=f.x;
Adsorbates[CurrentSystem][J].Atoms[j].Force.y+=f.y;
Adsorbates[CurrentSystem][J].Atoms[j].Force.z+=f.z;
// add contribution to the strain derivative tensor
StrainDerivativeTensor[CurrentSystem].ax+=f.x*dr.x;
StrainDerivativeTensor[CurrentSystem].bx+=f.y*dr.x;
StrainDerivativeTensor[CurrentSystem].cx+=f.z*dr.x;
StrainDerivativeTensor[CurrentSystem].ay+=f.x*dr.y;
StrainDerivativeTensor[CurrentSystem].by+=f.y*dr.y;
StrainDerivativeTensor[CurrentSystem].cy+=f.z*dr.y;
StrainDerivativeTensor[CurrentSystem].az+=f.x*dr.z;
StrainDerivativeTensor[CurrentSystem].bz+=f.y*dr.z;
StrainDerivativeTensor[CurrentSystem].cz+=f.z*dr.z;
VECTOR dJI;
dJI.x=(posB.x-comB.x)-(posA.x-comA.x);
dJI.y=(posB.y-comB.y)-(posA.y-comA.y);
dJI.z=(posB.z-comB.z)-(posA.z-comA.z);
// the corrected com-com distance vector
drJI.x=dr.x+(posB.x-comB.x)-(posA.x-comA.x);
drJI.y=dr.y+(posB.y-comB.y)-(posA.y-comA.y);
drJI.z=dr.z+(posB.z-comB.z)-(posA.z-comA.z);
// add the contributions to the Born-term
BornTerm[CurrentSystem].xxxx+=DDF*drJI.x*dr.x*drJI.x*dr.x+DF*drJI.x*dr.x+DF*drJI.x*drJI.x;
BornTerm[CurrentSystem].xxyy+=DDF*drJI.x*dr.x*drJI.y*dr.y;
BornTerm[CurrentSystem].xxzz+=DDF*drJI.x*dr.x*drJI.z*dr.z;
BornTerm[CurrentSystem].xxyz+=0.5*DDF*drJI.x*dr.x*(drJI.y*dr.z+drJI.z*dr.y);
BornTerm[CurrentSystem].xxzx+=0.5*DDF*drJI.x*dr.x*(drJI.x*dr.z+drJI.z*dr.x)+0.5*DF*(drJI.x*dJI.z)+DF*(drJI.x*dr.z);
BornTerm[CurrentSystem].xxxy+=0.5*DDF*drJI.x*dr.x*(drJI.x*dr.y+drJI.y*dr.x)+0.5*DF*(drJI.x*dJI.y)+DF*drJI.x*dr.y;
BornTerm[CurrentSystem].yyyy+=DDF*drJI.y*dr.y*dr.y*dr.y+2.0*DF*drJI.y*dr.y+DDF*drJI.y*dr.y*dJI.y*dr.y+DF*drJI.y*dJI.y;
BornTerm[CurrentSystem].yyzz+=0.5*DDF*(drJI.y*dr.y*dr.z*dr.z+dr.y*drJI.y*dr.z*dr.z)+0.5*DDF*drJI.y*dr.y*(dJI.z*dr.z+dJI.z*dr.z);
BornTerm[CurrentSystem].yyyz+=0.5*DDF*(drJI.y*dr.y*dr.y*dr.z+dr.y*drJI.y*dr.y*dr.z)+DF*(drJI.y*dr.z)+0.5*DDF*drJI.y*dr.y*(dJI.y*dr.z+dJI.z*dr.y)+0.5*DF*(drJI.y*dJI.z);
BornTerm[CurrentSystem].yyzx+=0.5*DDF*(drJI.x*dr.z*dr.y*dr.y+dr.x*drJI.z*dr.y*dr.y)+0.25*DDF*(drJI.x*dr.z+drJI.z*dr.x)*(dJI.y*dr.y+dJI.y*dr.y);
BornTerm[CurrentSystem].yyxy+=0.5*DDF*(drJI.x*dr.y*dr.y*dr.y+dr.x*drJI.y*dr.y*dr.y)+DF*(drJI.x*dr.y)+0.25*DDF*(drJI.x*dr.y+drJI.y*dr.x)*(dJI.y*dr.y+dJI.y*dr.y)+0.5*DF*(drJI.x*dJI.y);
BornTerm[CurrentSystem].zzzz+=DDF*drJI.z*dr.z*dr.z*dr.z+2.0*DF*drJI.z*dr.z+DDF*drJI.z*dr.z*dJI.z*dr.z+DF*drJI.z*dJI.z;
BornTerm[CurrentSystem].zzyz+=0.5*DDF*(drJI.y*dr.z*dr.z*dr.z+dr.y*drJI.z*dr.z*dr.z)+DF*(drJI.y*dr.z)+0.25*DDF*(drJI.y*dr.z+drJI.z*dr.y)*(dJI.z*dr.z+dJI.z*dr.z)+0.5*DF*(drJI.y*dJI.z);
BornTerm[CurrentSystem].zzzx+=0.5*DDF*(drJI.x*dr.z*dr.z*dr.z+dr.x*drJI.z*dr.z*dr.z)+DF*(drJI.x*dr.z)+0.25*DDF*(drJI.x*dr.z+drJI.z*dr.x)*(dJI.z*dr.z+dJI.z*dr.z)+0.5*DF*(drJI.x*dJI.z);
BornTerm[CurrentSystem].zzxy+=0.5*DDF*(drJI.x*dr.y*dr.z*dr.z+dr.x*drJI.y*dr.z*dr.z)+0.25*DDF*(drJI.x*dr.y+drJI.y*dr.x)*(dJI.z*dr.z+dJI.z*dr.z);
BornTerm[CurrentSystem].yzyz+=0.5*DDF*(drJI.y*dr.z*dr.y*dr.z+dr.y*drJI.z*dr.y*dr.z)+0.5*DF*(drJI.z*dr.z+drJI.y*dr.y)+0.25*DDF*(drJI.y*dr.z+drJI.z*dr.y)*(dJI.y*dr.z+dJI.z*dr.y)+0.25*DF*(drJI.z*dJI.z+drJI.y*dJI.y);
BornTerm[CurrentSystem].yzzx+=0.5*DDF*(drJI.x*dr.z*dr.y*dr.z+dr.x*drJI.z*dr.y*dr.z)+0.5*DF*(drJI.x*dr.y)+0.25*DDF*(drJI.x*dr.z+drJI.z*dr.x)*(dJI.y*dr.z+dJI.z*dr.y)+0.25*DF*(drJI.x*dJI.y);
BornTerm[CurrentSystem].yzxy+=0.5*DDF*(drJI.x*dr.y*dr.y*dr.z+dr.x*drJI.y*dr.y*dr.z)+0.5*DF*(drJI.x*dr.z)+0.25*DDF*(drJI.x*dr.y+drJI.y*dr.x)*(dJI.y*dr.z+dJI.z*dr.y)+0.25*DF*(drJI.x*dJI.z);
BornTerm[CurrentSystem].zxzx+=0.5*DDF*(drJI.x*dr.z*dr.x*dr.z+dr.x*drJI.z*dr.x*dr.z)+0.5*DF*(drJI.z*dr.z+drJI.x*dr.x)+0.25*DDF*(drJI.x*dr.z+drJI.z*dr.x)*(dJI.x*dr.z+dJI.z*dr.x)+0.25*DF*(drJI.z*dJI.z+drJI.x*dJI.x);
BornTerm[CurrentSystem].zxxy+=0.5*DDF*(drJI.x*dr.y*dr.x*dr.z+dr.x*drJI.y*dr.x*dr.z)+0.5*DF*(drJI.y*dr.z)+0.25*DDF*(drJI.x*dr.y+drJI.y*dr.x)*(dJI.x*dr.z+dJI.z*dr.x)+0.25*DF*(drJI.y*dJI.z);
BornTerm[CurrentSystem].xyxy+=0.5*DDF*(drJI.x*dr.y*dr.x*dr.y+dr.x*drJI.y*dr.x*dr.y)+0.5*DF*(drJI.y*dr.y+drJI.x*dr.x)+0.25*DDF*(drJI.x*dr.y+drJI.y*dr.x)*(dJI.x*dr.y+dJI.y*dr.x)+0.25*DF*(drJI.y*dJI.y+drJI.x*dJI.x);
}
}
}
}
}
// second loop over cations
if(!OmitAdsorbateCationCoulombInteractions)
{
for(J=0;J<NumberOfCationMolecules[CurrentSystem];J++)
{
TypeMolB=Cations[CurrentSystem][J].Type;
for(jg=0;jg<Components[TypeMolB].NumberOfGroups;jg++)
{
RigidJ=Components[TypeMolB].Groups[jg].Rigid;
for(ja=0;ja<Components[TypeMolB].Groups[jg].NumberOfGroupAtoms;ja++)
{
j=Components[TypeMolB].Groups[jg].Atoms[ja];
if(RigidJ)
comB=Cations[CurrentSystem][J].Groups[jg].CenterOfMassPosition;
else
comB=Cations[CurrentSystem][J].Atoms[j].Position;
typeB=Cations[CurrentSystem][J].Atoms[j].Type;
chargeB=Cations[CurrentSystem][J].Atoms[j].Charge;
posB=Cations[CurrentSystem][J].Atoms[j].Position;
dr.x=posA.x-posB.x;
dr.y=posA.y-posB.y;
dr.z=posA.z-posB.z;
dr=ApplyBoundaryCondition(dr);
rr=SQR(dr.x)+SQR(dr.y)+SQR(dr.z);
if(rr<CutOffChargeChargeSquared[CurrentSystem])
{
PotentialSecondDerivativeCoulombic(chargeA,chargeB,rr,&energy,&DF,&DDF);
UAdsorbateCationChargeChargeReal[CurrentSystem]+=energy;
f.x=DF*dr.x;
f.y=DF*dr.y;
f.z=DF*dr.z;
// add contribution to the first derivatives
Adsorbates[CurrentSystem][I].Atoms[i].Force.x-=f.x;
Adsorbates[CurrentSystem][I].Atoms[i].Force.y-=f.y;
Adsorbates[CurrentSystem][I].Atoms[i].Force.z-=f.z;
Cations[CurrentSystem][J].Atoms[j].Force.x+=f.x;
Cations[CurrentSystem][J].Atoms[j].Force.y+=f.y;
Cations[CurrentSystem][J].Atoms[j].Force.z+=f.z;
// add contribution to the strain derivative tensor
StrainDerivativeTensor[CurrentSystem].ax+=f.x*dr.x;
StrainDerivativeTensor[CurrentSystem].bx+=f.y*dr.x;
StrainDerivativeTensor[CurrentSystem].cx+=f.z*dr.x;
StrainDerivativeTensor[CurrentSystem].ay+=f.x*dr.y;
StrainDerivativeTensor[CurrentSystem].by+=f.y*dr.y;
StrainDerivativeTensor[CurrentSystem].cy+=f.z*dr.y;
StrainDerivativeTensor[CurrentSystem].az+=f.x*dr.z;
StrainDerivativeTensor[CurrentSystem].bz+=f.y*dr.z;
StrainDerivativeTensor[CurrentSystem].cz+=f.z*dr.z;
VECTOR dJI;
dJI.x=(posB.x-comB.x)-(posA.x-comA.x);
dJI.y=(posB.y-comB.y)-(posA.y-comA.y);
dJI.z=(posB.z-comB.z)-(posA.z-comA.z);
// the corrected com-com distance vector
drJI.x=dr.x+(posB.x-comB.x)-(posA.x-comA.x);
drJI.y=dr.y+(posB.y-comB.y)-(posA.y-comA.y);
drJI.z=dr.z+(posB.z-comB.z)-(posA.z-comA.z);
// add the contributions to the Born-term
BornTerm[CurrentSystem].xxxx+=DDF*drJI.x*dr.x*drJI.x*dr.x+DF*drJI.x*dr.x+DF*drJI.x*drJI.x;
BornTerm[CurrentSystem].xxyy+=DDF*drJI.x*dr.x*drJI.y*dr.y;
BornTerm[CurrentSystem].xxzz+=DDF*drJI.x*dr.x*drJI.z*dr.z;
BornTerm[CurrentSystem].xxyz+=0.5*DDF*drJI.x*dr.x*(drJI.y*dr.z+drJI.z*dr.y);
BornTerm[CurrentSystem].xxzx+=0.5*DDF*drJI.x*dr.x*(drJI.x*dr.z+drJI.z*dr.x)+0.5*DF*(drJI.x*dJI.z)+DF*(drJI.x*dr.z);
BornTerm[CurrentSystem].xxxy+=0.5*DDF*drJI.x*dr.x*(drJI.x*dr.y+drJI.y*dr.x)+0.5*DF*(drJI.x*dJI.y)+DF*drJI.x*dr.y;
BornTerm[CurrentSystem].yyyy+=DDF*drJI.y*dr.y*dr.y*dr.y+2.0*DF*drJI.y*dr.y+DDF*drJI.y*dr.y*dJI.y*dr.y+DF*drJI.y*dJI.y;
BornTerm[CurrentSystem].yyzz+=0.5*DDF*(drJI.y*dr.y*dr.z*dr.z+dr.y*drJI.y*dr.z*dr.z)+0.5*DDF*drJI.y*dr.y*(dJI.z*dr.z+dJI.z*dr.z);
BornTerm[CurrentSystem].yyyz+=0.5*DDF*(drJI.y*dr.y*dr.y*dr.z+dr.y*drJI.y*dr.y*dr.z)+DF*(drJI.y*dr.z)+0.5*DDF*drJI.y*dr.y*(dJI.y*dr.z+dJI.z*dr.y)+0.5*DF*(drJI.y*dJI.z);
BornTerm[CurrentSystem].yyzx+=0.5*DDF*(drJI.x*dr.z*dr.y*dr.y+dr.x*drJI.z*dr.y*dr.y)+0.25*DDF*(drJI.x*dr.z+drJI.z*dr.x)*(dJI.y*dr.y+dJI.y*dr.y);
BornTerm[CurrentSystem].yyxy+=0.5*DDF*(drJI.x*dr.y*dr.y*dr.y+dr.x*drJI.y*dr.y*dr.y)+DF*(drJI.x*dr.y)+0.25*DDF*(drJI.x*dr.y+drJI.y*dr.x)*(dJI.y*dr.y+dJI.y*dr.y)+0.5*DF*(drJI.x*dJI.y);
BornTerm[CurrentSystem].zzzz+=DDF*drJI.z*dr.z*dr.z*dr.z+2.0*DF*drJI.z*dr.z+DDF*drJI.z*dr.z*dJI.z*dr.z+DF*drJI.z*dJI.z;
BornTerm[CurrentSystem].zzyz+=0.5*DDF*(drJI.y*dr.z*dr.z*dr.z+dr.y*drJI.z*dr.z*dr.z)+DF*(drJI.y*dr.z)+0.25*DDF*(drJI.y*dr.z+drJI.z*dr.y)*(dJI.z*dr.z+dJI.z*dr.z)+0.5*DF*(drJI.y*dJI.z);
BornTerm[CurrentSystem].zzzx+=0.5*DDF*(drJI.x*dr.z*dr.z*dr.z+dr.x*drJI.z*dr.z*dr.z)+DF*(drJI.x*dr.z)+0.25*DDF*(drJI.x*dr.z+drJI.z*dr.x)*(dJI.z*dr.z+dJI.z*dr.z)+0.5*DF*(drJI.x*dJI.z);
BornTerm[CurrentSystem].zzxy+=0.5*DDF*(drJI.x*dr.y*dr.z*dr.z+dr.x*drJI.y*dr.z*dr.z)+0.25*DDF*(drJI.x*dr.y+drJI.y*dr.x)*(dJI.z*dr.z+dJI.z*dr.z);
BornTerm[CurrentSystem].yzyz+=0.5*DDF*(drJI.y*dr.z*dr.y*dr.z+dr.y*drJI.z*dr.y*dr.z)+0.5*DF*(drJI.z*dr.z+drJI.y*dr.y)+0.25*DDF*(drJI.y*dr.z+drJI.z*dr.y)*(dJI.y*dr.z+dJI.z*dr.y)+0.25*DF*(drJI.z*dJI.z+drJI.y*dJI.y);
BornTerm[CurrentSystem].yzzx+=0.5*DDF*(drJI.x*dr.z*dr.y*dr.z+dr.x*drJI.z*dr.y*dr.z)+0.5*DF*(drJI.x*dr.y)+0.25*DDF*(drJI.x*dr.z+drJI.z*dr.x)*(dJI.y*dr.z+dJI.z*dr.y)+0.25*DF*(drJI.x*dJI.y);
BornTerm[CurrentSystem].yzxy+=0.5*DDF*(drJI.x*dr.y*dr.y*dr.z+dr.x*drJI.y*dr.y*dr.z)+0.5*DF*(drJI.x*dr.z)+0.25*DDF*(drJI.x*dr.y+drJI.y*dr.x)*(dJI.y*dr.z+dJI.z*dr.y)+0.25*DF*(drJI.x*dJI.z);
BornTerm[CurrentSystem].zxzx+=0.5*DDF*(drJI.x*dr.z*dr.x*dr.z+dr.x*drJI.z*dr.x*dr.z)+0.5*DF*(drJI.z*dr.z+drJI.x*dr.x)+0.25*DDF*(drJI.x*dr.z+drJI.z*dr.x)*(dJI.x*dr.z+dJI.z*dr.x)+0.25*DF*(drJI.z*dJI.z+drJI.x*dJI.x);
BornTerm[CurrentSystem].zxxy+=0.5*DDF*(drJI.x*dr.y*dr.x*dr.z+dr.x*drJI.y*dr.x*dr.z)+0.5*DF*(drJI.y*dr.z)+0.25*DDF*(drJI.x*dr.y+drJI.y*dr.x)*(dJI.x*dr.z+dJI.z*dr.x)+0.25*DF*(drJI.y*dJI.z);
BornTerm[CurrentSystem].xyxy+=0.5*DDF*(drJI.x*dr.y*dr.x*dr.y+dr.x*drJI.y*dr.x*dr.y)+0.5*DF*(drJI.y*dr.y+drJI.x*dr.x)+0.25*DDF*(drJI.x*dr.y+drJI.y*dr.x)*(dJI.x*dr.y+dJI.y*dr.x)+0.25*DF*(drJI.y*dJI.y+drJI.x*dJI.x);
}
}
}
}
}
}
}
}
if(!OmitCationCationCoulombInteractions)
{
// first loop over cation molecules
for(I=0;I<NumberOfCationMolecules[CurrentSystem];I++)
{
TypeMolA=Cations[CurrentSystem][I].Type;
for(ig=0;ig<Components[TypeMolA].NumberOfGroups;ig++)
{
RigidI=Components[TypeMolA].Groups[ig].Rigid;
for(ia=0;ia<Components[TypeMolA].Groups[ig].NumberOfGroupAtoms;ia++)
{
i=Components[TypeMolA].Groups[ig].Atoms[ia];
if(RigidI)
comA=Cations[CurrentSystem][I].Groups[ig].CenterOfMassPosition;
else
comA=Cations[CurrentSystem][I].Atoms[i].Position;
typeA=Cations[CurrentSystem][I].Atoms[i].Type;
chargeA=Cations[CurrentSystem][I].Atoms[i].Charge;
posA=Cations[CurrentSystem][I].Atoms[i].Position;
// second loop over cation
for(J=I+1;J<NumberOfCationMolecules[CurrentSystem];J++)
{
TypeMolB=Cations[CurrentSystem][J].Type;
for(jg=0;jg<Components[TypeMolB].NumberOfGroups;jg++)
{
RigidJ=Components[TypeMolB].Groups[jg].Rigid;
for(ja=0;ja<Components[TypeMolB].Groups[jg].NumberOfGroupAtoms;ja++)
{
j=Components[TypeMolB].Groups[jg].Atoms[ja];
if(RigidJ)
comB=Cations[CurrentSystem][J].Groups[jg].CenterOfMassPosition;
else
comB=Cations[CurrentSystem][J].Atoms[j].Position;
typeB=Cations[CurrentSystem][J].Atoms[j].Type;
chargeB=Cations[CurrentSystem][J].Atoms[j].Charge;
posB=Cations[CurrentSystem][J].Atoms[j].Position;
dr.x=posA.x-posB.x;
dr.y=posA.y-posB.y;
dr.z=posA.z-posB.z;
dr=ApplyBoundaryCondition(dr);
rr=SQR(dr.x)+SQR(dr.y)+SQR(dr.z);
if(rr<CutOffChargeChargeSquared[CurrentSystem])
{
PotentialSecondDerivativeCoulombic(chargeA,chargeB,rr,&energy,&DF,&DDF);
// add contribution to the energy
UCationCationChargeChargeReal[CurrentSystem]+=energy;
f.x=DF*dr.x;
f.y=DF*dr.y;
f.z=DF*dr.z;
// add contribution to the first derivatives
Cations[CurrentSystem][I].Atoms[i].Force.x-=f.x;
Cations[CurrentSystem][I].Atoms[i].Force.y-=f.y;
Cations[CurrentSystem][I].Atoms[i].Force.z-=f.z;
Cations[CurrentSystem][J].Atoms[j].Force.x+=f.x;
Cations[CurrentSystem][J].Atoms[j].Force.y+=f.y;
Cations[CurrentSystem][J].Atoms[j].Force.z+=f.z;
// add contribution to the strain derivative tensor
StrainDerivativeTensor[CurrentSystem].ax+=f.x*dr.x;
StrainDerivativeTensor[CurrentSystem].bx+=f.y*dr.x;
StrainDerivativeTensor[CurrentSystem].cx+=f.z*dr.x;
StrainDerivativeTensor[CurrentSystem].ay+=f.x*dr.y;
StrainDerivativeTensor[CurrentSystem].by+=f.y*dr.y;
StrainDerivativeTensor[CurrentSystem].cy+=f.z*dr.y;
StrainDerivativeTensor[CurrentSystem].az+=f.x*dr.z;
StrainDerivativeTensor[CurrentSystem].bz+=f.y*dr.z;
StrainDerivativeTensor[CurrentSystem].cz+=f.z*dr.z;
VECTOR dJI;
dJI.x=(posB.x-comB.x)-(posA.x-comA.x);
dJI.y=(posB.y-comB.y)-(posA.y-comA.y);
dJI.z=(posB.z-comB.z)-(posA.z-comA.z);
// the corrected com-com distance vector
drJI.x=dr.x+(posB.x-comB.x)-(posA.x-comA.x);
drJI.y=dr.y+(posB.y-comB.y)-(posA.y-comA.y);
drJI.z=dr.z+(posB.z-comB.z)-(posA.z-comA.z);
// add the contributions to the Born-term
BornTerm[CurrentSystem].xxxx+=DDF*drJI.x*dr.x*dr.x*dr.x+2.0*DF*drJI.x*dr.x+DDF*drJI.x*dr.x*dJI.x*dr.x+DF*drJI.x*dJI.x;
BornTerm[CurrentSystem].xxyy+=DDF*drJI.x*dr.x*dr.y*dr.y+0.5*DDF*drJI.x*dr.x*(dJI.y*dr.y+dJI.y*dr.y);
BornTerm[CurrentSystem].xxzz+=DDF*drJI.x*dr.x*dr.z*dr.z+0.5*DDF*drJI.x*dr.x*(dJI.z*dr.z+dJI.z*dr.z);
BornTerm[CurrentSystem].xxyz+=DDF*drJI.x*dr.x*dr.y*dr.z+0.5*DDF*drJI.x*dr.x*(dJI.y*dr.z+dJI.z*dr.y);
BornTerm[CurrentSystem].xxzx+=DDF*drJI.x*dr.x*dr.x*dr.z+DF*(drJI.x*dr.z)+0.5*DDF*drJI.x*dr.x*(dJI.x*dr.z+dJI.z*dr.x)+0.5*DF*(drJI.x*dJI.z);
BornTerm[CurrentSystem].xxxy+=DDF*drJI.x*dr.x*dr.x*dr.y+DF*drJI.x*dr.y+0.5*DDF*drJI.x*dr.x*(dJI.x*dr.y+dJI.y*dr.x)+0.5*DF*(drJI.x*dJI.y);
BornTerm[CurrentSystem].yyyy+=DDF*drJI.y*dr.y*dr.y*dr.y+2.0*DF*drJI.y*dr.y+DDF*drJI.y*dr.y*dJI.y*dr.y+DF*drJI.y*dJI.y;
BornTerm[CurrentSystem].yyzz+=0.5*DDF*(drJI.y*dr.y*dr.z*dr.z+dr.y*drJI.y*dr.z*dr.z)+0.5*DDF*drJI.y*dr.y*(dJI.z*dr.z+dJI.z*dr.z);
BornTerm[CurrentSystem].yyyz+=0.5*DDF*(drJI.y*dr.y*dr.y*dr.z+dr.y*drJI.y*dr.y*dr.z)+DF*(drJI.y*dr.z)+0.5*DDF*drJI.y*dr.y*(dJI.y*dr.z+dJI.z*dr.y)+0.5*DF*(drJI.y*dJI.z);
BornTerm[CurrentSystem].yyzx+=0.5*DDF*(drJI.x*dr.z*dr.y*dr.y+dr.x*drJI.z*dr.y*dr.y)+0.25*DDF*(drJI.x*dr.z+drJI.z*dr.x)*(dJI.y*dr.y+dJI.y*dr.y);
BornTerm[CurrentSystem].yyxy+=0.5*DDF*(drJI.x*dr.y*dr.y*dr.y+dr.x*drJI.y*dr.y*dr.y)+DF*(drJI.x*dr.y)+0.25*DDF*(drJI.x*dr.y+drJI.y*dr.x)*(dJI.y*dr.y+dJI.y*dr.y)+0.5*DF*(drJI.x*dJI.y);
BornTerm[CurrentSystem].zzzz+=DDF*drJI.z*dr.z*dr.z*dr.z+2.0*DF*drJI.z*dr.z+DDF*drJI.z*dr.z*dJI.z*dr.z+DF*drJI.z*dJI.z;
BornTerm[CurrentSystem].zzyz+=0.5*DDF*(drJI.y*dr.z*dr.z*dr.z+dr.y*drJI.z*dr.z*dr.z)+DF*(drJI.y*dr.z)+0.25*DDF*(drJI.y*dr.z+drJI.z*dr.y)*(dJI.z*dr.z+dJI.z*dr.z)+0.5*DF*(drJI.y*dJI.z);
BornTerm[CurrentSystem].zzzx+=0.5*DDF*(drJI.x*dr.z*dr.z*dr.z+dr.x*drJI.z*dr.z*dr.z)+DF*(drJI.x*dr.z)+0.25*DDF*(drJI.x*dr.z+drJI.z*dr.x)*(dJI.z*dr.z+dJI.z*dr.z)+0.5*DF*(drJI.x*dJI.z);
BornTerm[CurrentSystem].zzxy+=0.5*DDF*(drJI.x*dr.y*dr.z*dr.z+dr.x*drJI.y*dr.z*dr.z)+0.25*DDF*(drJI.x*dr.y+drJI.y*dr.x)*(dJI.z*dr.z+dJI.z*dr.z);
BornTerm[CurrentSystem].yzyz+=0.5*DDF*(drJI.y*dr.z*dr.y*dr.z+dr.y*drJI.z*dr.y*dr.z)+0.5*DF*(drJI.z*dr.z+drJI.y*dr.y)+0.25*DDF*(drJI.y*dr.z+drJI.z*dr.y)*(dJI.y*dr.z+dJI.z*dr.y)+0.25*DF*(drJI.z*dJI.z+drJI.y*dJI.y);
BornTerm[CurrentSystem].yzzx+=0.5*DDF*(drJI.x*dr.z*dr.y*dr.z+dr.x*drJI.z*dr.y*dr.z)+0.5*DF*(drJI.x*dr.y)+0.25*DDF*(drJI.x*dr.z+drJI.z*dr.x)*(dJI.y*dr.z+dJI.z*dr.y)+0.25*DF*(drJI.x*dJI.y);
BornTerm[CurrentSystem].yzxy+=0.5*DDF*(drJI.x*dr.y*dr.y*dr.z+dr.x*drJI.y*dr.y*dr.z)+0.5*DF*(drJI.x*dr.z)+0.25*DDF*(drJI.x*dr.y+drJI.y*dr.x)*(dJI.y*dr.z+dJI.z*dr.y)+0.25*DF*(drJI.x*dJI.z);
BornTerm[CurrentSystem].zxzx+=0.5*DDF*(drJI.x*dr.z*dr.x*dr.z+dr.x*drJI.z*dr.x*dr.z)+0.5*DF*(drJI.z*dr.z+drJI.x*dr.x)+0.25*DDF*(drJI.x*dr.z+drJI.z*dr.x)*(dJI.x*dr.z+dJI.z*dr.x)+0.25*DF*(drJI.z*dJI.z+drJI.x*dJI.x);
BornTerm[CurrentSystem].zxxy+=0.5*DDF*(drJI.x*dr.y*dr.x*dr.z+dr.x*drJI.y*dr.x*dr.z)+0.5*DF*(drJI.y*dr.z)+0.25*DDF*(drJI.x*dr.y+drJI.y*dr.x)*(dJI.x*dr.z+dJI.z*dr.x)+0.25*DF*(drJI.y*dJI.z);
BornTerm[CurrentSystem].xyxy+=0.5*DDF*(drJI.x*dr.y*dr.x*dr.y+dr.x*drJI.y*dr.x*dr.y)+0.5*DF*(drJI.y*dr.y+drJI.x*dr.x)+0.25*DDF*(drJI.x*dr.y+drJI.y*dr.x)*(dJI.x*dr.y+dJI.y*dr.x)+0.25*DF*(drJI.y*dJI.y+drJI.x*dJI.x);
}
}
}
}
}
}
}
}
}