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| /************************************************************************************************************* | |
| The MIT License | |
| Copyright (C) 2006-2019 David Dubbeldam, Sofia Calero, Thijs Vlugt, Donald E. Ellis, and Randall Q. Snurr. | |
| D.Dubbeldam@uva.nl http://www.uva.nl/profiel/d/u/d.dubbeldam/d.dubbeldam.html | |
| scaldia@upo.es http://www.upo.es/raspa/ | |
| t.j.h.vlugt@tudelft.nl http://homepage.tudelft.nl/v9k6y | |
| don-ellis@northwestern.edu http://dvworld.northwestern.edu/ | |
| snurr@northwestern.edu http://zeolites.cqe.northwestern.edu/ | |
| Permission is hereby granted, free of charge, to any person | |
| obtaining a copy of this software and associated documentation | |
| files (the "Software"), to deal in the Software without | |
| restriction, including without limitation the rights to use, | |
| copy, modify, merge, publish, distribute, sublicense, and/or sell | |
| copies of the Software, and to permit persons to whom the | |
| Software is furnished to do so, subject to the following | |
| conditions: | |
| The above copyright notice and this permission notice shall be | |
| included in all copies or substantial portions of the Software. | |
| THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, | |
| EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES | |
| OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND | |
| NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT | |
| HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, | |
| WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING | |
| FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR | |
| OTHER DEALINGS IN THE SOFTWARE. | |
| **************************************************************************************************************/ | |
| void ComputeInterVDWBornTerm(void) | |
| { | |
| int I,J,i,j,ig,jg,ia,ja; | |
| int typeA,typeB; | |
| int TypeMolA,TypeMolB; | |
| REAL rr; | |
| REAL energy; | |
| VECTOR posA,posB,dr; | |
| VECTOR comA,comB; | |
| REAL DF,DDF; | |
| int RigidI,RigidJ; | |
| VECTOR drJI,f; | |
| REAL scalingA,scalingB; | |
| // first loop over adsorbate molecules | |
| for(I=0;I<NumberOfAdsorbateMolecules[CurrentSystem];I++) | |
| { | |
| TypeMolA=Adsorbates[CurrentSystem][I].Type; | |
| for(ig=0;ig<Components[TypeMolA].NumberOfGroups;ig++) | |
| { | |
| RigidI=Components[TypeMolA].Groups[ig].Rigid; | |
| for(ia=0;ia<Components[TypeMolA].Groups[ig].NumberOfGroupAtoms;ia++) | |
| { | |
| i=Components[TypeMolA].Groups[ig].Atoms[ia]; | |
| if(RigidI) | |
| comA=Adsorbates[CurrentSystem][I].Groups[ig].CenterOfMassPosition; | |
| else | |
| comA=Adsorbates[CurrentSystem][I].Atoms[i].Position; | |
| typeA=Adsorbates[CurrentSystem][I].Atoms[i].Type; | |
| posA=Adsorbates[CurrentSystem][I].Atoms[i].Position; | |
| scalingA=Adsorbates[CurrentSystem][I].Atoms[i].CFVDWScalingParameter; | |
| if(!OmitAdsorbateAdsorbateVDWInteractions) | |
| { | |
| // second loop over adsorbates | |
| for(J=I+1;J<NumberOfAdsorbateMolecules[CurrentSystem];J++) | |
| { | |
| TypeMolB=Adsorbates[CurrentSystem][J].Type; | |
| for(jg=0;jg<Components[TypeMolB].NumberOfGroups;jg++) | |
| { | |
| RigidJ=Components[TypeMolB].Groups[jg].Rigid; | |
| for(ja=0;ja<Components[TypeMolB].Groups[jg].NumberOfGroupAtoms;ja++) | |
| { | |
| j=Components[TypeMolB].Groups[jg].Atoms[ja]; | |
| if(RigidJ) | |
| comB=Adsorbates[CurrentSystem][J].Groups[jg].CenterOfMassPosition; | |
| else | |
| comB=Adsorbates[CurrentSystem][J].Atoms[j].Position; | |
| typeB=Adsorbates[CurrentSystem][J].Atoms[j].Type; | |
| posB=Adsorbates[CurrentSystem][J].Atoms[j].Position; | |
| scalingB=Adsorbates[CurrentSystem][J].Atoms[j].CFVDWScalingParameter; | |
| dr.x=posA.x-posB.x; | |
| dr.y=posA.y-posB.y; | |
| dr.z=posA.z-posB.z; | |
| dr=ApplyBoundaryCondition(dr); | |
| rr=SQR(dr.x)+SQR(dr.y)+SQR(dr.z); | |
| if(rr<CutOffVDWSquared) | |
| { | |
| PotentialSecondDerivative(typeA,typeB,rr,&energy,&DF,&DDF,scalingA*scalingB); | |
| // add contribution to the energy | |
| UAdsorbateAdsorbateVDW[CurrentSystem]+=energy; | |
| f.x=DF*dr.x; | |
| f.y=DF*dr.y; | |
| f.z=DF*dr.z; | |
| // add contribution to the first derivatives | |
| Adsorbates[CurrentSystem][I].Atoms[i].Force.x-=f.x; | |
| Adsorbates[CurrentSystem][I].Atoms[i].Force.y-=f.y; | |
| Adsorbates[CurrentSystem][I].Atoms[i].Force.z-=f.z; | |
| Adsorbates[CurrentSystem][J].Atoms[j].Force.x+=f.x; | |
| Adsorbates[CurrentSystem][J].Atoms[j].Force.y+=f.y; | |
| Adsorbates[CurrentSystem][J].Atoms[j].Force.z+=f.z; | |
| // add contribution to the strain derivative tensor | |
| StrainDerivativeTensor[CurrentSystem].ax+=f.x*dr.x; | |
| StrainDerivativeTensor[CurrentSystem].bx+=f.y*dr.x; | |
| StrainDerivativeTensor[CurrentSystem].cx+=f.z*dr.x; | |
| StrainDerivativeTensor[CurrentSystem].ay+=f.x*dr.y; | |
| StrainDerivativeTensor[CurrentSystem].by+=f.y*dr.y; | |
| StrainDerivativeTensor[CurrentSystem].cy+=f.z*dr.y; | |
| StrainDerivativeTensor[CurrentSystem].az+=f.x*dr.z; | |
| StrainDerivativeTensor[CurrentSystem].bz+=f.y*dr.z; | |
| StrainDerivativeTensor[CurrentSystem].cz+=f.z*dr.z; | |
| VECTOR dJI; | |
| dJI.x=(posB.x-comB.x)-(posA.x-comA.x); | |
| dJI.y=(posB.y-comB.y)-(posA.y-comA.y); | |
| dJI.z=(posB.z-comB.z)-(posA.z-comA.z); | |
| // the corrected com-com distance vector | |
| drJI.x=dr.x+(posB.x-comB.x)-(posA.x-comA.x); | |
| drJI.y=dr.y+(posB.y-comB.y)-(posA.y-comA.y); | |
| drJI.z=dr.z+(posB.z-comB.z)-(posA.z-comA.z); | |
| // add the contributions to the Born-term | |
| BornTerm[CurrentSystem].xxxx+=DDF*drJI.x*dr.x*drJI.x*dr.x+DF*drJI.x*dr.x+DF*drJI.x*drJI.x; | |
| BornTerm[CurrentSystem].xxyy+=DDF*drJI.x*dr.x*drJI.y*dr.y; | |
| BornTerm[CurrentSystem].xxzz+=DDF*drJI.x*dr.x*drJI.z*dr.z; | |
| BornTerm[CurrentSystem].xxyz+=0.5*DDF*drJI.x*dr.x*(drJI.y*dr.z+drJI.z*dr.y); | |
| BornTerm[CurrentSystem].xxzx+=0.5*DDF*drJI.x*dr.x*(drJI.x*dr.z+drJI.z*dr.x)+0.5*DF*(drJI.x*dJI.z)+DF*(drJI.x*dr.z); | |
| BornTerm[CurrentSystem].xxxy+=0.5*DDF*drJI.x*dr.x*(drJI.x*dr.y+drJI.y*dr.x)+0.5*DF*(drJI.x*dJI.y)+DF*drJI.x*dr.y; | |
| BornTerm[CurrentSystem].yyyy+=DDF*drJI.y*dr.y*dr.y*dr.y+2.0*DF*drJI.y*dr.y+DDF*drJI.y*dr.y*dJI.y*dr.y+DF*drJI.y*dJI.y; | |
| BornTerm[CurrentSystem].yyzz+=0.5*DDF*(drJI.y*dr.y*dr.z*dr.z+dr.y*drJI.y*dr.z*dr.z)+0.5*DDF*drJI.y*dr.y*(dJI.z*dr.z+dJI.z*dr.z); | |
| BornTerm[CurrentSystem].yyyz+=0.5*DDF*(drJI.y*dr.y*dr.y*dr.z+dr.y*drJI.y*dr.y*dr.z)+DF*(drJI.y*dr.z)+0.5*DDF*drJI.y*dr.y*(dJI.y*dr.z+dJI.z*dr.y)+0.5*DF*(drJI.y*dJI.z); | |
| BornTerm[CurrentSystem].yyzx+=0.5*DDF*(drJI.x*dr.z*dr.y*dr.y+dr.x*drJI.z*dr.y*dr.y)+0.25*DDF*(drJI.x*dr.z+drJI.z*dr.x)*(dJI.y*dr.y+dJI.y*dr.y); | |
| BornTerm[CurrentSystem].yyxy+=0.5*DDF*(drJI.x*dr.y*dr.y*dr.y+dr.x*drJI.y*dr.y*dr.y)+DF*(drJI.x*dr.y)+0.25*DDF*(drJI.x*dr.y+drJI.y*dr.x)*(dJI.y*dr.y+dJI.y*dr.y)+0.5*DF*(drJI.x*dJI.y); | |
| BornTerm[CurrentSystem].zzzz+=DDF*drJI.z*dr.z*dr.z*dr.z+2.0*DF*drJI.z*dr.z+DDF*drJI.z*dr.z*dJI.z*dr.z+DF*drJI.z*dJI.z; | |
| BornTerm[CurrentSystem].zzyz+=0.5*DDF*(drJI.y*dr.z*dr.z*dr.z+dr.y*drJI.z*dr.z*dr.z)+DF*(drJI.y*dr.z)+0.25*DDF*(drJI.y*dr.z+drJI.z*dr.y)*(dJI.z*dr.z+dJI.z*dr.z)+0.5*DF*(drJI.y*dJI.z); | |
| BornTerm[CurrentSystem].zzzx+=0.5*DDF*(drJI.x*dr.z*dr.z*dr.z+dr.x*drJI.z*dr.z*dr.z)+DF*(drJI.x*dr.z)+0.25*DDF*(drJI.x*dr.z+drJI.z*dr.x)*(dJI.z*dr.z+dJI.z*dr.z)+0.5*DF*(drJI.x*dJI.z); | |
| BornTerm[CurrentSystem].zzxy+=0.5*DDF*(drJI.x*dr.y*dr.z*dr.z+dr.x*drJI.y*dr.z*dr.z)+0.25*DDF*(drJI.x*dr.y+drJI.y*dr.x)*(dJI.z*dr.z+dJI.z*dr.z); | |
| BornTerm[CurrentSystem].yzyz+=0.5*DDF*(drJI.y*dr.z*dr.y*dr.z+dr.y*drJI.z*dr.y*dr.z)+0.5*DF*(drJI.z*dr.z+drJI.y*dr.y)+0.25*DDF*(drJI.y*dr.z+drJI.z*dr.y)*(dJI.y*dr.z+dJI.z*dr.y)+0.25*DF*(drJI.z*dJI.z+drJI.y*dJI.y); | |
| BornTerm[CurrentSystem].yzzx+=0.5*DDF*(drJI.x*dr.z*dr.y*dr.z+dr.x*drJI.z*dr.y*dr.z)+0.5*DF*(drJI.x*dr.y)+0.25*DDF*(drJI.x*dr.z+drJI.z*dr.x)*(dJI.y*dr.z+dJI.z*dr.y)+0.25*DF*(drJI.x*dJI.y); | |
| BornTerm[CurrentSystem].yzxy+=0.5*DDF*(drJI.x*dr.y*dr.y*dr.z+dr.x*drJI.y*dr.y*dr.z)+0.5*DF*(drJI.x*dr.z)+0.25*DDF*(drJI.x*dr.y+drJI.y*dr.x)*(dJI.y*dr.z+dJI.z*dr.y)+0.25*DF*(drJI.x*dJI.z); | |
| BornTerm[CurrentSystem].zxzx+=0.5*DDF*(drJI.x*dr.z*dr.x*dr.z+dr.x*drJI.z*dr.x*dr.z)+0.5*DF*(drJI.z*dr.z+drJI.x*dr.x)+0.25*DDF*(drJI.x*dr.z+drJI.z*dr.x)*(dJI.x*dr.z+dJI.z*dr.x)+0.25*DF*(drJI.z*dJI.z+drJI.x*dJI.x); | |
| BornTerm[CurrentSystem].zxxy+=0.5*DDF*(drJI.x*dr.y*dr.x*dr.z+dr.x*drJI.y*dr.x*dr.z)+0.5*DF*(drJI.y*dr.z)+0.25*DDF*(drJI.x*dr.y+drJI.y*dr.x)*(dJI.x*dr.z+dJI.z*dr.x)+0.25*DF*(drJI.y*dJI.z); | |
| BornTerm[CurrentSystem].xyxy+=0.5*DDF*(drJI.x*dr.y*dr.x*dr.y+dr.x*drJI.y*dr.x*dr.y)+0.5*DF*(drJI.y*dr.y+drJI.x*dr.x)+0.25*DDF*(drJI.x*dr.y+drJI.y*dr.x)*(dJI.x*dr.y+dJI.y*dr.x)+0.25*DF*(drJI.y*dJI.y+drJI.x*dJI.x); | |
| } | |
| } | |
| } | |
| } | |
| } | |
| // second loop over cations | |
| if(!OmitAdsorbateCationVDWInteractions) | |
| { | |
| for(J=0;J<NumberOfCationMolecules[CurrentSystem];J++) | |
| { | |
| TypeMolB=Cations[CurrentSystem][J].Type; | |
| for(jg=0;jg<Components[TypeMolB].NumberOfGroups;jg++) | |
| { | |
| RigidJ=Components[TypeMolB].Groups[jg].Rigid; | |
| for(ja=0;ja<Components[TypeMolB].Groups[jg].NumberOfGroupAtoms;ja++) | |
| { | |
| j=Components[TypeMolB].Groups[jg].Atoms[ja]; | |
| if(RigidJ) | |
| comB=Cations[CurrentSystem][J].Groups[jg].CenterOfMassPosition; | |
| else | |
| comB=Cations[CurrentSystem][J].Atoms[j].Position; | |
| typeB=Cations[CurrentSystem][J].Atoms[j].Type; | |
| posB=Cations[CurrentSystem][J].Atoms[j].Position; | |
| scalingB=Adsorbates[CurrentSystem][J].Atoms[j].CFVDWScalingParameter; | |
| dr.x=posA.x-posB.x; | |
| dr.y=posA.y-posB.y; | |
| dr.z=posA.z-posB.z; | |
| dr=ApplyBoundaryCondition(dr); | |
| rr=SQR(dr.x)+SQR(dr.y)+SQR(dr.z); | |
| if(rr<CutOffVDWSquared) | |
| { | |
| PotentialSecondDerivative(typeA,typeB,rr,&energy,&DF,&DDF,scalingA*scalingB); | |
| // add contribution to the energy | |
| UAdsorbateCationVDW[CurrentSystem]+=energy; | |
| f.x=DF*dr.x; | |
| f.y=DF*dr.y; | |
| f.z=DF*dr.z; | |
| // add contribution to the first derivatives | |
| Adsorbates[CurrentSystem][I].Atoms[i].Force.x-=f.x; | |
| Adsorbates[CurrentSystem][I].Atoms[i].Force.y-=f.y; | |
| Adsorbates[CurrentSystem][I].Atoms[i].Force.z-=f.z; | |
| Cations[CurrentSystem][J].Atoms[j].Force.x+=f.x; | |
| Cations[CurrentSystem][J].Atoms[j].Force.y+=f.y; | |
| Cations[CurrentSystem][J].Atoms[j].Force.z+=f.z; | |
| // add contribution to the strain derivative tensor | |
| StrainDerivativeTensor[CurrentSystem].ax+=f.x*dr.x; | |
| StrainDerivativeTensor[CurrentSystem].bx+=f.y*dr.x; | |
| StrainDerivativeTensor[CurrentSystem].cx+=f.z*dr.x; | |
| StrainDerivativeTensor[CurrentSystem].ay+=f.x*dr.y; | |
| StrainDerivativeTensor[CurrentSystem].by+=f.y*dr.y; | |
| StrainDerivativeTensor[CurrentSystem].cy+=f.z*dr.y; | |
| StrainDerivativeTensor[CurrentSystem].az+=f.x*dr.z; | |
| StrainDerivativeTensor[CurrentSystem].bz+=f.y*dr.z; | |
| StrainDerivativeTensor[CurrentSystem].cz+=f.z*dr.z; | |
| VECTOR dJI; | |
| dJI.x=(posB.x-comB.x)-(posA.x-comA.x); | |
| dJI.y=(posB.y-comB.y)-(posA.y-comA.y); | |
| dJI.z=(posB.z-comB.z)-(posA.z-comA.z); | |
| // the corrected com-com distance vector | |
| drJI.x=dr.x+(posB.x-comB.x)-(posA.x-comA.x); | |
| drJI.y=dr.y+(posB.y-comB.y)-(posA.y-comA.y); | |
| drJI.z=dr.z+(posB.z-comB.z)-(posA.z-comA.z); | |
| // add the contributions to the Born-term | |
| BornTerm[CurrentSystem].xxxx+=DDF*drJI.x*dr.x*drJI.x*dr.x+DF*drJI.x*dr.x+DF*drJI.x*drJI.x; | |
| BornTerm[CurrentSystem].xxyy+=DDF*drJI.x*dr.x*drJI.y*dr.y; | |
| BornTerm[CurrentSystem].xxzz+=DDF*drJI.x*dr.x*drJI.z*dr.z; | |
| BornTerm[CurrentSystem].xxyz+=0.5*DDF*drJI.x*dr.x*(drJI.y*dr.z+drJI.z*dr.y); | |
| BornTerm[CurrentSystem].xxzx+=0.5*DDF*drJI.x*dr.x*(drJI.x*dr.z+drJI.z*dr.x)+0.5*DF*(drJI.x*dJI.z)+DF*(drJI.x*dr.z); | |
| BornTerm[CurrentSystem].xxxy+=0.5*DDF*drJI.x*dr.x*(drJI.x*dr.y+drJI.y*dr.x)+0.5*DF*(drJI.x*dJI.y)+DF*drJI.x*dr.y; | |
| BornTerm[CurrentSystem].yyyy+=DDF*drJI.y*dr.y*dr.y*dr.y+2.0*DF*drJI.y*dr.y+DDF*drJI.y*dr.y*dJI.y*dr.y+DF*drJI.y*dJI.y; | |
| BornTerm[CurrentSystem].yyzz+=0.5*DDF*(drJI.y*dr.y*dr.z*dr.z+dr.y*drJI.y*dr.z*dr.z)+0.5*DDF*drJI.y*dr.y*(dJI.z*dr.z+dJI.z*dr.z); | |
| BornTerm[CurrentSystem].yyyz+=0.5*DDF*(drJI.y*dr.y*dr.y*dr.z+dr.y*drJI.y*dr.y*dr.z)+DF*(drJI.y*dr.z)+0.5*DDF*drJI.y*dr.y*(dJI.y*dr.z+dJI.z*dr.y)+0.5*DF*(drJI.y*dJI.z); | |
| BornTerm[CurrentSystem].yyzx+=0.5*DDF*(drJI.x*dr.z*dr.y*dr.y+dr.x*drJI.z*dr.y*dr.y)+0.25*DDF*(drJI.x*dr.z+drJI.z*dr.x)*(dJI.y*dr.y+dJI.y*dr.y); | |
| BornTerm[CurrentSystem].yyxy+=0.5*DDF*(drJI.x*dr.y*dr.y*dr.y+dr.x*drJI.y*dr.y*dr.y)+DF*(drJI.x*dr.y)+0.25*DDF*(drJI.x*dr.y+drJI.y*dr.x)*(dJI.y*dr.y+dJI.y*dr.y)+0.5*DF*(drJI.x*dJI.y); | |
| BornTerm[CurrentSystem].zzzz+=DDF*drJI.z*dr.z*dr.z*dr.z+2.0*DF*drJI.z*dr.z+DDF*drJI.z*dr.z*dJI.z*dr.z+DF*drJI.z*dJI.z; | |
| BornTerm[CurrentSystem].zzyz+=0.5*DDF*(drJI.y*dr.z*dr.z*dr.z+dr.y*drJI.z*dr.z*dr.z)+DF*(drJI.y*dr.z)+0.25*DDF*(drJI.y*dr.z+drJI.z*dr.y)*(dJI.z*dr.z+dJI.z*dr.z)+0.5*DF*(drJI.y*dJI.z); | |
| BornTerm[CurrentSystem].zzzx+=0.5*DDF*(drJI.x*dr.z*dr.z*dr.z+dr.x*drJI.z*dr.z*dr.z)+DF*(drJI.x*dr.z)+0.25*DDF*(drJI.x*dr.z+drJI.z*dr.x)*(dJI.z*dr.z+dJI.z*dr.z)+0.5*DF*(drJI.x*dJI.z); | |
| BornTerm[CurrentSystem].zzxy+=0.5*DDF*(drJI.x*dr.y*dr.z*dr.z+dr.x*drJI.y*dr.z*dr.z)+0.25*DDF*(drJI.x*dr.y+drJI.y*dr.x)*(dJI.z*dr.z+dJI.z*dr.z); | |
| BornTerm[CurrentSystem].yzyz+=0.5*DDF*(drJI.y*dr.z*dr.y*dr.z+dr.y*drJI.z*dr.y*dr.z)+0.5*DF*(drJI.z*dr.z+drJI.y*dr.y)+0.25*DDF*(drJI.y*dr.z+drJI.z*dr.y)*(dJI.y*dr.z+dJI.z*dr.y)+0.25*DF*(drJI.z*dJI.z+drJI.y*dJI.y); | |
| BornTerm[CurrentSystem].yzzx+=0.5*DDF*(drJI.x*dr.z*dr.y*dr.z+dr.x*drJI.z*dr.y*dr.z)+0.5*DF*(drJI.x*dr.y)+0.25*DDF*(drJI.x*dr.z+drJI.z*dr.x)*(dJI.y*dr.z+dJI.z*dr.y)+0.25*DF*(drJI.x*dJI.y); | |
| BornTerm[CurrentSystem].yzxy+=0.5*DDF*(drJI.x*dr.y*dr.y*dr.z+dr.x*drJI.y*dr.y*dr.z)+0.5*DF*(drJI.x*dr.z)+0.25*DDF*(drJI.x*dr.y+drJI.y*dr.x)*(dJI.y*dr.z+dJI.z*dr.y)+0.25*DF*(drJI.x*dJI.z); | |
| BornTerm[CurrentSystem].zxzx+=0.5*DDF*(drJI.x*dr.z*dr.x*dr.z+dr.x*drJI.z*dr.x*dr.z)+0.5*DF*(drJI.z*dr.z+drJI.x*dr.x)+0.25*DDF*(drJI.x*dr.z+drJI.z*dr.x)*(dJI.x*dr.z+dJI.z*dr.x)+0.25*DF*(drJI.z*dJI.z+drJI.x*dJI.x); | |
| BornTerm[CurrentSystem].zxxy+=0.5*DDF*(drJI.x*dr.y*dr.x*dr.z+dr.x*drJI.y*dr.x*dr.z)+0.5*DF*(drJI.y*dr.z)+0.25*DDF*(drJI.x*dr.y+drJI.y*dr.x)*(dJI.x*dr.z+dJI.z*dr.x)+0.25*DF*(drJI.y*dJI.z); | |
| BornTerm[CurrentSystem].xyxy+=0.5*DDF*(drJI.x*dr.y*dr.x*dr.y+dr.x*drJI.y*dr.x*dr.y)+0.5*DF*(drJI.y*dr.y+drJI.x*dr.x)+0.25*DDF*(drJI.x*dr.y+drJI.y*dr.x)*(dJI.x*dr.y+dJI.y*dr.x)+0.25*DF*(drJI.y*dJI.y+drJI.x*dJI.x); | |
| } | |
| } | |
| } | |
| } | |
| } | |
| } | |
| } | |
| } | |
| if(!OmitCationCationVDWInteractions) | |
| { | |
| // first loop over cation molecules | |
| for(I=0;I<NumberOfCationMolecules[CurrentSystem];I++) | |
| { | |
| TypeMolA=Cations[CurrentSystem][I].Type; | |
| for(ig=0;ig<Components[TypeMolA].NumberOfGroups;ig++) | |
| { | |
| RigidI=Components[TypeMolA].Groups[ig].Rigid; | |
| for(ia=0;ia<Components[TypeMolA].Groups[ig].NumberOfGroupAtoms;ia++) | |
| { | |
| i=Components[TypeMolA].Groups[ig].Atoms[ia]; | |
| if(RigidI) | |
| comA=Cations[CurrentSystem][I].Groups[ig].CenterOfMassPosition; | |
| else | |
| comA=Cations[CurrentSystem][I].Atoms[i].Position; | |
| typeA=Cations[CurrentSystem][I].Atoms[i].Type; | |
| posA=Cations[CurrentSystem][I].Atoms[i].Position; | |
| scalingA=Cations[CurrentSystem][I].Atoms[i].CFVDWScalingParameter; | |
| // second loop over cation | |
| for(J=I+1;J<NumberOfCationMolecules[CurrentSystem];J++) | |
| { | |
| TypeMolB=Cations[CurrentSystem][J].Type; | |
| for(jg=0;jg<Components[TypeMolB].NumberOfGroups;jg++) | |
| { | |
| RigidJ=Components[TypeMolB].Groups[jg].Rigid; | |
| for(ja=0;ja<Components[TypeMolB].Groups[jg].NumberOfGroupAtoms;ja++) | |
| { | |
| j=Components[TypeMolB].Groups[jg].Atoms[ja]; | |
| if(RigidJ) | |
| comB=Cations[CurrentSystem][J].Groups[jg].CenterOfMassPosition; | |
| else | |
| comB=Cations[CurrentSystem][J].Atoms[j].Position; | |
| typeB=Cations[CurrentSystem][J].Atoms[j].Type; | |
| posB=Cations[CurrentSystem][J].Atoms[j].Position; | |
| dr.x=posA.x-posB.x; | |
| dr.y=posA.y-posB.y; | |
| dr.z=posA.z-posB.z; | |
| dr=ApplyBoundaryCondition(dr); | |
| rr=SQR(dr.x)+SQR(dr.y)+SQR(dr.z); | |
| if(rr<CutOffVDWSquared) | |
| { | |
| scalingB=Adsorbates[CurrentSystem][J].Atoms[j].CFVDWScalingParameter; | |
| PotentialSecondDerivative(typeA,typeB,rr,&energy,&DF,&DDF,scalingA*scalingB); | |
| // add contribution to the energy | |
| UCationCationVDW[CurrentSystem]+=energy; | |
| f.x=DF*dr.x; | |
| f.y=DF*dr.y; | |
| f.z=DF*dr.z; | |
| // add contribution to the first derivatives | |
| Cations[CurrentSystem][I].Atoms[i].Force.x-=f.x; | |
| Cations[CurrentSystem][I].Atoms[i].Force.y-=f.y; | |
| Cations[CurrentSystem][I].Atoms[i].Force.z-=f.z; | |
| Cations[CurrentSystem][J].Atoms[j].Force.x+=f.x; | |
| Cations[CurrentSystem][J].Atoms[j].Force.y+=f.y; | |
| Cations[CurrentSystem][J].Atoms[j].Force.z+=f.z; | |
| // add contribution to the strain derivative tensor | |
| StrainDerivativeTensor[CurrentSystem].ax+=f.x*dr.x; | |
| StrainDerivativeTensor[CurrentSystem].bx+=f.y*dr.x; | |
| StrainDerivativeTensor[CurrentSystem].cx+=f.z*dr.x; | |
| StrainDerivativeTensor[CurrentSystem].ay+=f.x*dr.y; | |
| StrainDerivativeTensor[CurrentSystem].by+=f.y*dr.y; | |
| StrainDerivativeTensor[CurrentSystem].cy+=f.z*dr.y; | |
| StrainDerivativeTensor[CurrentSystem].az+=f.x*dr.z; | |
| StrainDerivativeTensor[CurrentSystem].bz+=f.y*dr.z; | |
| StrainDerivativeTensor[CurrentSystem].cz+=f.z*dr.z; | |
| VECTOR dJI; | |
| dJI.x=(posB.x-comB.x)-(posA.x-comA.x); | |
| dJI.y=(posB.y-comB.y)-(posA.y-comA.y); | |
| dJI.z=(posB.z-comB.z)-(posA.z-comA.z); | |
| // the corrected com-com distance vector | |
| drJI.x=dr.x+(posB.x-comB.x)-(posA.x-comA.x); | |
| drJI.y=dr.y+(posB.y-comB.y)-(posA.y-comA.y); | |
| drJI.z=dr.z+(posB.z-comB.z)-(posA.z-comA.z); | |
| // add the contributions to the Born-term | |
| BornTerm[CurrentSystem].xxxx+=DDF*drJI.x*dr.x*dr.x*dr.x+2.0*DF*drJI.x*dr.x+DDF*drJI.x*dr.x*dJI.x*dr.x+DF*drJI.x*dJI.x; | |
| BornTerm[CurrentSystem].xxyy+=DDF*drJI.x*dr.x*dr.y*dr.y+0.5*DDF*drJI.x*dr.x*(dJI.y*dr.y+dJI.y*dr.y); | |
| BornTerm[CurrentSystem].xxzz+=DDF*drJI.x*dr.x*dr.z*dr.z+0.5*DDF*drJI.x*dr.x*(dJI.z*dr.z+dJI.z*dr.z); | |
| BornTerm[CurrentSystem].xxyz+=DDF*drJI.x*dr.x*dr.y*dr.z+0.5*DDF*drJI.x*dr.x*(dJI.y*dr.z+dJI.z*dr.y); | |
| BornTerm[CurrentSystem].xxzx+=DDF*drJI.x*dr.x*dr.x*dr.z+DF*(drJI.x*dr.z)+0.5*DDF*drJI.x*dr.x*(dJI.x*dr.z+dJI.z*dr.x)+0.5*DF*(drJI.x*dJI.z); | |
| BornTerm[CurrentSystem].xxxy+=DDF*drJI.x*dr.x*dr.x*dr.y+DF*drJI.x*dr.y+0.5*DDF*drJI.x*dr.x*(dJI.x*dr.y+dJI.y*dr.x)+0.5*DF*(drJI.x*dJI.y); | |
| BornTerm[CurrentSystem].yyyy+=DDF*drJI.y*dr.y*dr.y*dr.y+2.0*DF*drJI.y*dr.y+DDF*drJI.y*dr.y*dJI.y*dr.y+DF*drJI.y*dJI.y; | |
| BornTerm[CurrentSystem].yyzz+=0.5*DDF*(drJI.y*dr.y*dr.z*dr.z+dr.y*drJI.y*dr.z*dr.z)+0.5*DDF*drJI.y*dr.y*(dJI.z*dr.z+dJI.z*dr.z); | |
| BornTerm[CurrentSystem].yyyz+=0.5*DDF*(drJI.y*dr.y*dr.y*dr.z+dr.y*drJI.y*dr.y*dr.z)+DF*(drJI.y*dr.z)+0.5*DDF*drJI.y*dr.y*(dJI.y*dr.z+dJI.z*dr.y)+0.5*DF*(drJI.y*dJI.z); | |
| BornTerm[CurrentSystem].yyzx+=0.5*DDF*(drJI.x*dr.z*dr.y*dr.y+dr.x*drJI.z*dr.y*dr.y)+0.25*DDF*(drJI.x*dr.z+drJI.z*dr.x)*(dJI.y*dr.y+dJI.y*dr.y); | |
| BornTerm[CurrentSystem].yyxy+=0.5*DDF*(drJI.x*dr.y*dr.y*dr.y+dr.x*drJI.y*dr.y*dr.y)+DF*(drJI.x*dr.y)+0.25*DDF*(drJI.x*dr.y+drJI.y*dr.x)*(dJI.y*dr.y+dJI.y*dr.y)+0.5*DF*(drJI.x*dJI.y); | |
| BornTerm[CurrentSystem].zzzz+=DDF*drJI.z*dr.z*dr.z*dr.z+2.0*DF*drJI.z*dr.z+DDF*drJI.z*dr.z*dJI.z*dr.z+DF*drJI.z*dJI.z; | |
| BornTerm[CurrentSystem].zzyz+=0.5*DDF*(drJI.y*dr.z*dr.z*dr.z+dr.y*drJI.z*dr.z*dr.z)+DF*(drJI.y*dr.z)+0.25*DDF*(drJI.y*dr.z+drJI.z*dr.y)*(dJI.z*dr.z+dJI.z*dr.z)+0.5*DF*(drJI.y*dJI.z); | |
| BornTerm[CurrentSystem].zzzx+=0.5*DDF*(drJI.x*dr.z*dr.z*dr.z+dr.x*drJI.z*dr.z*dr.z)+DF*(drJI.x*dr.z)+0.25*DDF*(drJI.x*dr.z+drJI.z*dr.x)*(dJI.z*dr.z+dJI.z*dr.z)+0.5*DF*(drJI.x*dJI.z); | |
| BornTerm[CurrentSystem].zzxy+=0.5*DDF*(drJI.x*dr.y*dr.z*dr.z+dr.x*drJI.y*dr.z*dr.z)+0.25*DDF*(drJI.x*dr.y+drJI.y*dr.x)*(dJI.z*dr.z+dJI.z*dr.z); | |
| BornTerm[CurrentSystem].yzyz+=0.5*DDF*(drJI.y*dr.z*dr.y*dr.z+dr.y*drJI.z*dr.y*dr.z)+0.5*DF*(drJI.z*dr.z+drJI.y*dr.y)+0.25*DDF*(drJI.y*dr.z+drJI.z*dr.y)*(dJI.y*dr.z+dJI.z*dr.y)+0.25*DF*(drJI.z*dJI.z+drJI.y*dJI.y); | |
| BornTerm[CurrentSystem].yzzx+=0.5*DDF*(drJI.x*dr.z*dr.y*dr.z+dr.x*drJI.z*dr.y*dr.z)+0.5*DF*(drJI.x*dr.y)+0.25*DDF*(drJI.x*dr.z+drJI.z*dr.x)*(dJI.y*dr.z+dJI.z*dr.y)+0.25*DF*(drJI.x*dJI.y); | |
| BornTerm[CurrentSystem].yzxy+=0.5*DDF*(drJI.x*dr.y*dr.y*dr.z+dr.x*drJI.y*dr.y*dr.z)+0.5*DF*(drJI.x*dr.z)+0.25*DDF*(drJI.x*dr.y+drJI.y*dr.x)*(dJI.y*dr.z+dJI.z*dr.y)+0.25*DF*(drJI.x*dJI.z); | |
| BornTerm[CurrentSystem].zxzx+=0.5*DDF*(drJI.x*dr.z*dr.x*dr.z+dr.x*drJI.z*dr.x*dr.z)+0.5*DF*(drJI.z*dr.z+drJI.x*dr.x)+0.25*DDF*(drJI.x*dr.z+drJI.z*dr.x)*(dJI.x*dr.z+dJI.z*dr.x)+0.25*DF*(drJI.z*dJI.z+drJI.x*dJI.x); | |
| BornTerm[CurrentSystem].zxxy+=0.5*DDF*(drJI.x*dr.y*dr.x*dr.z+dr.x*drJI.y*dr.x*dr.z)+0.5*DF*(drJI.y*dr.z)+0.25*DDF*(drJI.x*dr.y+drJI.y*dr.x)*(dJI.x*dr.z+dJI.z*dr.x)+0.25*DF*(drJI.y*dJI.z); | |
| BornTerm[CurrentSystem].xyxy+=0.5*DDF*(drJI.x*dr.y*dr.x*dr.y+dr.x*drJI.y*dr.x*dr.y)+0.5*DF*(drJI.y*dr.y+drJI.x*dr.x)+0.25*DDF*(drJI.x*dr.y+drJI.y*dr.x)*(dJI.x*dr.y+dJI.y*dr.x)+0.25*DF*(drJI.y*dJI.y+drJI.x*dJI.x); | |
| } | |
| } | |
| } | |
| } | |
| } | |
| } | |
| } | |
| } | |
| } | |
| void ComputeInterChargeChargeBornTerm(void) | |
| { | |
| int I,J,i,j,ig,jg,ia,ja; | |
| int typeA,typeB; | |
| int TypeMolA,TypeMolB; | |
| REAL rr,energy; | |
| REAL chargeA,chargeB; | |
| VECTOR posA,posB,dr; | |
| VECTOR comA,comB; | |
| REAL DF,DDF; | |
| int RigidI,RigidJ; | |
| VECTOR drJI,f; | |
| if(ChargeMethod==NONE) return; | |
| // first loop over adsorbate molecules | |
| for(I=0;I<NumberOfAdsorbateMolecules[CurrentSystem];I++) | |
| { | |
| TypeMolA=Adsorbates[CurrentSystem][I].Type; | |
| for(ig=0;ig<Components[TypeMolA].NumberOfGroups;ig++) | |
| { | |
| RigidI=Components[TypeMolA].Groups[ig].Rigid; | |
| for(ia=0;ia<Components[TypeMolA].Groups[ig].NumberOfGroupAtoms;ia++) | |
| { | |
| i=Components[TypeMolA].Groups[ig].Atoms[ia]; | |
| if(RigidI) | |
| comA=Adsorbates[CurrentSystem][I].Groups[ig].CenterOfMassPosition; | |
| else | |
| comA=Adsorbates[CurrentSystem][I].Atoms[i].Position; | |
| typeA=Adsorbates[CurrentSystem][I].Atoms[i].Type; | |
| chargeA=Adsorbates[CurrentSystem][I].Atoms[i].Charge; | |
| posA=Adsorbates[CurrentSystem][I].Atoms[i].Position; | |
| if(!OmitAdsorbateAdsorbateCoulombInteractions) | |
| { | |
| // second loop over adsorbates | |
| for(J=I+1;J<NumberOfAdsorbateMolecules[CurrentSystem];J++) | |
| { | |
| TypeMolB=Adsorbates[CurrentSystem][J].Type; | |
| for(jg=0;jg<Components[TypeMolB].NumberOfGroups;jg++) | |
| { | |
| RigidJ=Components[TypeMolB].Groups[jg].Rigid; | |
| for(ja=0;ja<Components[TypeMolB].Groups[jg].NumberOfGroupAtoms;ja++) | |
| { | |
| j=Components[TypeMolB].Groups[jg].Atoms[ja]; | |
| if(RigidJ) | |
| comB=Adsorbates[CurrentSystem][J].Groups[jg].CenterOfMassPosition; | |
| else | |
| comB=Adsorbates[CurrentSystem][J].Atoms[j].Position; | |
| typeB=Adsorbates[CurrentSystem][J].Atoms[j].Type; | |
| chargeB=Adsorbates[CurrentSystem][J].Atoms[j].Charge; | |
| posB=Adsorbates[CurrentSystem][J].Atoms[j].Position; | |
| dr.x=posA.x-posB.x; | |
| dr.y=posA.y-posB.y; | |
| dr.z=posA.z-posB.z; | |
| dr=ApplyBoundaryCondition(dr); | |
| rr=SQR(dr.x)+SQR(dr.y)+SQR(dr.z); | |
| if(rr<CutOffChargeChargeSquared[CurrentSystem]) | |
| { | |
| PotentialSecondDerivativeCoulombic(chargeA,chargeB,rr,&energy,&DF,&DDF); | |
| UAdsorbateAdsorbateChargeChargeReal[CurrentSystem]+=energy; | |
| f.x=DF*dr.x; | |
| f.y=DF*dr.y; | |
| f.z=DF*dr.z; | |
| // add contribution to the first derivatives | |
| Adsorbates[CurrentSystem][I].Atoms[i].Force.x-=f.x; | |
| Adsorbates[CurrentSystem][I].Atoms[i].Force.y-=f.y; | |
| Adsorbates[CurrentSystem][I].Atoms[i].Force.z-=f.z; | |
| Adsorbates[CurrentSystem][J].Atoms[j].Force.x+=f.x; | |
| Adsorbates[CurrentSystem][J].Atoms[j].Force.y+=f.y; | |
| Adsorbates[CurrentSystem][J].Atoms[j].Force.z+=f.z; | |
| // add contribution to the strain derivative tensor | |
| StrainDerivativeTensor[CurrentSystem].ax+=f.x*dr.x; | |
| StrainDerivativeTensor[CurrentSystem].bx+=f.y*dr.x; | |
| StrainDerivativeTensor[CurrentSystem].cx+=f.z*dr.x; | |
| StrainDerivativeTensor[CurrentSystem].ay+=f.x*dr.y; | |
| StrainDerivativeTensor[CurrentSystem].by+=f.y*dr.y; | |
| StrainDerivativeTensor[CurrentSystem].cy+=f.z*dr.y; | |
| StrainDerivativeTensor[CurrentSystem].az+=f.x*dr.z; | |
| StrainDerivativeTensor[CurrentSystem].bz+=f.y*dr.z; | |
| StrainDerivativeTensor[CurrentSystem].cz+=f.z*dr.z; | |
| VECTOR dJI; | |
| dJI.x=(posB.x-comB.x)-(posA.x-comA.x); | |
| dJI.y=(posB.y-comB.y)-(posA.y-comA.y); | |
| dJI.z=(posB.z-comB.z)-(posA.z-comA.z); | |
| // the corrected com-com distance vector | |
| drJI.x=dr.x+(posB.x-comB.x)-(posA.x-comA.x); | |
| drJI.y=dr.y+(posB.y-comB.y)-(posA.y-comA.y); | |
| drJI.z=dr.z+(posB.z-comB.z)-(posA.z-comA.z); | |
| // add the contributions to the Born-term | |
| BornTerm[CurrentSystem].xxxx+=DDF*drJI.x*dr.x*drJI.x*dr.x+DF*drJI.x*dr.x+DF*drJI.x*drJI.x; | |
| BornTerm[CurrentSystem].xxyy+=DDF*drJI.x*dr.x*drJI.y*dr.y; | |
| BornTerm[CurrentSystem].xxzz+=DDF*drJI.x*dr.x*drJI.z*dr.z; | |
| BornTerm[CurrentSystem].xxyz+=0.5*DDF*drJI.x*dr.x*(drJI.y*dr.z+drJI.z*dr.y); | |
| BornTerm[CurrentSystem].xxzx+=0.5*DDF*drJI.x*dr.x*(drJI.x*dr.z+drJI.z*dr.x)+0.5*DF*(drJI.x*dJI.z)+DF*(drJI.x*dr.z); | |
| BornTerm[CurrentSystem].xxxy+=0.5*DDF*drJI.x*dr.x*(drJI.x*dr.y+drJI.y*dr.x)+0.5*DF*(drJI.x*dJI.y)+DF*drJI.x*dr.y; | |
| BornTerm[CurrentSystem].yyyy+=DDF*drJI.y*dr.y*dr.y*dr.y+2.0*DF*drJI.y*dr.y+DDF*drJI.y*dr.y*dJI.y*dr.y+DF*drJI.y*dJI.y; | |
| BornTerm[CurrentSystem].yyzz+=0.5*DDF*(drJI.y*dr.y*dr.z*dr.z+dr.y*drJI.y*dr.z*dr.z)+0.5*DDF*drJI.y*dr.y*(dJI.z*dr.z+dJI.z*dr.z); | |
| BornTerm[CurrentSystem].yyyz+=0.5*DDF*(drJI.y*dr.y*dr.y*dr.z+dr.y*drJI.y*dr.y*dr.z)+DF*(drJI.y*dr.z)+0.5*DDF*drJI.y*dr.y*(dJI.y*dr.z+dJI.z*dr.y)+0.5*DF*(drJI.y*dJI.z); | |
| BornTerm[CurrentSystem].yyzx+=0.5*DDF*(drJI.x*dr.z*dr.y*dr.y+dr.x*drJI.z*dr.y*dr.y)+0.25*DDF*(drJI.x*dr.z+drJI.z*dr.x)*(dJI.y*dr.y+dJI.y*dr.y); | |
| BornTerm[CurrentSystem].yyxy+=0.5*DDF*(drJI.x*dr.y*dr.y*dr.y+dr.x*drJI.y*dr.y*dr.y)+DF*(drJI.x*dr.y)+0.25*DDF*(drJI.x*dr.y+drJI.y*dr.x)*(dJI.y*dr.y+dJI.y*dr.y)+0.5*DF*(drJI.x*dJI.y); | |
| BornTerm[CurrentSystem].zzzz+=DDF*drJI.z*dr.z*dr.z*dr.z+2.0*DF*drJI.z*dr.z+DDF*drJI.z*dr.z*dJI.z*dr.z+DF*drJI.z*dJI.z; | |
| BornTerm[CurrentSystem].zzyz+=0.5*DDF*(drJI.y*dr.z*dr.z*dr.z+dr.y*drJI.z*dr.z*dr.z)+DF*(drJI.y*dr.z)+0.25*DDF*(drJI.y*dr.z+drJI.z*dr.y)*(dJI.z*dr.z+dJI.z*dr.z)+0.5*DF*(drJI.y*dJI.z); | |
| BornTerm[CurrentSystem].zzzx+=0.5*DDF*(drJI.x*dr.z*dr.z*dr.z+dr.x*drJI.z*dr.z*dr.z)+DF*(drJI.x*dr.z)+0.25*DDF*(drJI.x*dr.z+drJI.z*dr.x)*(dJI.z*dr.z+dJI.z*dr.z)+0.5*DF*(drJI.x*dJI.z); | |
| BornTerm[CurrentSystem].zzxy+=0.5*DDF*(drJI.x*dr.y*dr.z*dr.z+dr.x*drJI.y*dr.z*dr.z)+0.25*DDF*(drJI.x*dr.y+drJI.y*dr.x)*(dJI.z*dr.z+dJI.z*dr.z); | |
| BornTerm[CurrentSystem].yzyz+=0.5*DDF*(drJI.y*dr.z*dr.y*dr.z+dr.y*drJI.z*dr.y*dr.z)+0.5*DF*(drJI.z*dr.z+drJI.y*dr.y)+0.25*DDF*(drJI.y*dr.z+drJI.z*dr.y)*(dJI.y*dr.z+dJI.z*dr.y)+0.25*DF*(drJI.z*dJI.z+drJI.y*dJI.y); | |
| BornTerm[CurrentSystem].yzzx+=0.5*DDF*(drJI.x*dr.z*dr.y*dr.z+dr.x*drJI.z*dr.y*dr.z)+0.5*DF*(drJI.x*dr.y)+0.25*DDF*(drJI.x*dr.z+drJI.z*dr.x)*(dJI.y*dr.z+dJI.z*dr.y)+0.25*DF*(drJI.x*dJI.y); | |
| BornTerm[CurrentSystem].yzxy+=0.5*DDF*(drJI.x*dr.y*dr.y*dr.z+dr.x*drJI.y*dr.y*dr.z)+0.5*DF*(drJI.x*dr.z)+0.25*DDF*(drJI.x*dr.y+drJI.y*dr.x)*(dJI.y*dr.z+dJI.z*dr.y)+0.25*DF*(drJI.x*dJI.z); | |
| BornTerm[CurrentSystem].zxzx+=0.5*DDF*(drJI.x*dr.z*dr.x*dr.z+dr.x*drJI.z*dr.x*dr.z)+0.5*DF*(drJI.z*dr.z+drJI.x*dr.x)+0.25*DDF*(drJI.x*dr.z+drJI.z*dr.x)*(dJI.x*dr.z+dJI.z*dr.x)+0.25*DF*(drJI.z*dJI.z+drJI.x*dJI.x); | |
| BornTerm[CurrentSystem].zxxy+=0.5*DDF*(drJI.x*dr.y*dr.x*dr.z+dr.x*drJI.y*dr.x*dr.z)+0.5*DF*(drJI.y*dr.z)+0.25*DDF*(drJI.x*dr.y+drJI.y*dr.x)*(dJI.x*dr.z+dJI.z*dr.x)+0.25*DF*(drJI.y*dJI.z); | |
| BornTerm[CurrentSystem].xyxy+=0.5*DDF*(drJI.x*dr.y*dr.x*dr.y+dr.x*drJI.y*dr.x*dr.y)+0.5*DF*(drJI.y*dr.y+drJI.x*dr.x)+0.25*DDF*(drJI.x*dr.y+drJI.y*dr.x)*(dJI.x*dr.y+dJI.y*dr.x)+0.25*DF*(drJI.y*dJI.y+drJI.x*dJI.x); | |
| } | |
| } | |
| } | |
| } | |
| } | |
| // second loop over cations | |
| if(!OmitAdsorbateCationCoulombInteractions) | |
| { | |
| for(J=0;J<NumberOfCationMolecules[CurrentSystem];J++) | |
| { | |
| TypeMolB=Cations[CurrentSystem][J].Type; | |
| for(jg=0;jg<Components[TypeMolB].NumberOfGroups;jg++) | |
| { | |
| RigidJ=Components[TypeMolB].Groups[jg].Rigid; | |
| for(ja=0;ja<Components[TypeMolB].Groups[jg].NumberOfGroupAtoms;ja++) | |
| { | |
| j=Components[TypeMolB].Groups[jg].Atoms[ja]; | |
| if(RigidJ) | |
| comB=Cations[CurrentSystem][J].Groups[jg].CenterOfMassPosition; | |
| else | |
| comB=Cations[CurrentSystem][J].Atoms[j].Position; | |
| typeB=Cations[CurrentSystem][J].Atoms[j].Type; | |
| chargeB=Cations[CurrentSystem][J].Atoms[j].Charge; | |
| posB=Cations[CurrentSystem][J].Atoms[j].Position; | |
| dr.x=posA.x-posB.x; | |
| dr.y=posA.y-posB.y; | |
| dr.z=posA.z-posB.z; | |
| dr=ApplyBoundaryCondition(dr); | |
| rr=SQR(dr.x)+SQR(dr.y)+SQR(dr.z); | |
| if(rr<CutOffChargeChargeSquared[CurrentSystem]) | |
| { | |
| PotentialSecondDerivativeCoulombic(chargeA,chargeB,rr,&energy,&DF,&DDF); | |
| UAdsorbateCationChargeChargeReal[CurrentSystem]+=energy; | |
| f.x=DF*dr.x; | |
| f.y=DF*dr.y; | |
| f.z=DF*dr.z; | |
| // add contribution to the first derivatives | |
| Adsorbates[CurrentSystem][I].Atoms[i].Force.x-=f.x; | |
| Adsorbates[CurrentSystem][I].Atoms[i].Force.y-=f.y; | |
| Adsorbates[CurrentSystem][I].Atoms[i].Force.z-=f.z; | |
| Cations[CurrentSystem][J].Atoms[j].Force.x+=f.x; | |
| Cations[CurrentSystem][J].Atoms[j].Force.y+=f.y; | |
| Cations[CurrentSystem][J].Atoms[j].Force.z+=f.z; | |
| // add contribution to the strain derivative tensor | |
| StrainDerivativeTensor[CurrentSystem].ax+=f.x*dr.x; | |
| StrainDerivativeTensor[CurrentSystem].bx+=f.y*dr.x; | |
| StrainDerivativeTensor[CurrentSystem].cx+=f.z*dr.x; | |
| StrainDerivativeTensor[CurrentSystem].ay+=f.x*dr.y; | |
| StrainDerivativeTensor[CurrentSystem].by+=f.y*dr.y; | |
| StrainDerivativeTensor[CurrentSystem].cy+=f.z*dr.y; | |
| StrainDerivativeTensor[CurrentSystem].az+=f.x*dr.z; | |
| StrainDerivativeTensor[CurrentSystem].bz+=f.y*dr.z; | |
| StrainDerivativeTensor[CurrentSystem].cz+=f.z*dr.z; | |
| VECTOR dJI; | |
| dJI.x=(posB.x-comB.x)-(posA.x-comA.x); | |
| dJI.y=(posB.y-comB.y)-(posA.y-comA.y); | |
| dJI.z=(posB.z-comB.z)-(posA.z-comA.z); | |
| // the corrected com-com distance vector | |
| drJI.x=dr.x+(posB.x-comB.x)-(posA.x-comA.x); | |
| drJI.y=dr.y+(posB.y-comB.y)-(posA.y-comA.y); | |
| drJI.z=dr.z+(posB.z-comB.z)-(posA.z-comA.z); | |
| // add the contributions to the Born-term | |
| BornTerm[CurrentSystem].xxxx+=DDF*drJI.x*dr.x*drJI.x*dr.x+DF*drJI.x*dr.x+DF*drJI.x*drJI.x; | |
| BornTerm[CurrentSystem].xxyy+=DDF*drJI.x*dr.x*drJI.y*dr.y; | |
| BornTerm[CurrentSystem].xxzz+=DDF*drJI.x*dr.x*drJI.z*dr.z; | |
| BornTerm[CurrentSystem].xxyz+=0.5*DDF*drJI.x*dr.x*(drJI.y*dr.z+drJI.z*dr.y); | |
| BornTerm[CurrentSystem].xxzx+=0.5*DDF*drJI.x*dr.x*(drJI.x*dr.z+drJI.z*dr.x)+0.5*DF*(drJI.x*dJI.z)+DF*(drJI.x*dr.z); | |
| BornTerm[CurrentSystem].xxxy+=0.5*DDF*drJI.x*dr.x*(drJI.x*dr.y+drJI.y*dr.x)+0.5*DF*(drJI.x*dJI.y)+DF*drJI.x*dr.y; | |
| BornTerm[CurrentSystem].yyyy+=DDF*drJI.y*dr.y*dr.y*dr.y+2.0*DF*drJI.y*dr.y+DDF*drJI.y*dr.y*dJI.y*dr.y+DF*drJI.y*dJI.y; | |
| BornTerm[CurrentSystem].yyzz+=0.5*DDF*(drJI.y*dr.y*dr.z*dr.z+dr.y*drJI.y*dr.z*dr.z)+0.5*DDF*drJI.y*dr.y*(dJI.z*dr.z+dJI.z*dr.z); | |
| BornTerm[CurrentSystem].yyyz+=0.5*DDF*(drJI.y*dr.y*dr.y*dr.z+dr.y*drJI.y*dr.y*dr.z)+DF*(drJI.y*dr.z)+0.5*DDF*drJI.y*dr.y*(dJI.y*dr.z+dJI.z*dr.y)+0.5*DF*(drJI.y*dJI.z); | |
| BornTerm[CurrentSystem].yyzx+=0.5*DDF*(drJI.x*dr.z*dr.y*dr.y+dr.x*drJI.z*dr.y*dr.y)+0.25*DDF*(drJI.x*dr.z+drJI.z*dr.x)*(dJI.y*dr.y+dJI.y*dr.y); | |
| BornTerm[CurrentSystem].yyxy+=0.5*DDF*(drJI.x*dr.y*dr.y*dr.y+dr.x*drJI.y*dr.y*dr.y)+DF*(drJI.x*dr.y)+0.25*DDF*(drJI.x*dr.y+drJI.y*dr.x)*(dJI.y*dr.y+dJI.y*dr.y)+0.5*DF*(drJI.x*dJI.y); | |
| BornTerm[CurrentSystem].zzzz+=DDF*drJI.z*dr.z*dr.z*dr.z+2.0*DF*drJI.z*dr.z+DDF*drJI.z*dr.z*dJI.z*dr.z+DF*drJI.z*dJI.z; | |
| BornTerm[CurrentSystem].zzyz+=0.5*DDF*(drJI.y*dr.z*dr.z*dr.z+dr.y*drJI.z*dr.z*dr.z)+DF*(drJI.y*dr.z)+0.25*DDF*(drJI.y*dr.z+drJI.z*dr.y)*(dJI.z*dr.z+dJI.z*dr.z)+0.5*DF*(drJI.y*dJI.z); | |
| BornTerm[CurrentSystem].zzzx+=0.5*DDF*(drJI.x*dr.z*dr.z*dr.z+dr.x*drJI.z*dr.z*dr.z)+DF*(drJI.x*dr.z)+0.25*DDF*(drJI.x*dr.z+drJI.z*dr.x)*(dJI.z*dr.z+dJI.z*dr.z)+0.5*DF*(drJI.x*dJI.z); | |
| BornTerm[CurrentSystem].zzxy+=0.5*DDF*(drJI.x*dr.y*dr.z*dr.z+dr.x*drJI.y*dr.z*dr.z)+0.25*DDF*(drJI.x*dr.y+drJI.y*dr.x)*(dJI.z*dr.z+dJI.z*dr.z); | |
| BornTerm[CurrentSystem].yzyz+=0.5*DDF*(drJI.y*dr.z*dr.y*dr.z+dr.y*drJI.z*dr.y*dr.z)+0.5*DF*(drJI.z*dr.z+drJI.y*dr.y)+0.25*DDF*(drJI.y*dr.z+drJI.z*dr.y)*(dJI.y*dr.z+dJI.z*dr.y)+0.25*DF*(drJI.z*dJI.z+drJI.y*dJI.y); | |
| BornTerm[CurrentSystem].yzzx+=0.5*DDF*(drJI.x*dr.z*dr.y*dr.z+dr.x*drJI.z*dr.y*dr.z)+0.5*DF*(drJI.x*dr.y)+0.25*DDF*(drJI.x*dr.z+drJI.z*dr.x)*(dJI.y*dr.z+dJI.z*dr.y)+0.25*DF*(drJI.x*dJI.y); | |
| BornTerm[CurrentSystem].yzxy+=0.5*DDF*(drJI.x*dr.y*dr.y*dr.z+dr.x*drJI.y*dr.y*dr.z)+0.5*DF*(drJI.x*dr.z)+0.25*DDF*(drJI.x*dr.y+drJI.y*dr.x)*(dJI.y*dr.z+dJI.z*dr.y)+0.25*DF*(drJI.x*dJI.z); | |
| BornTerm[CurrentSystem].zxzx+=0.5*DDF*(drJI.x*dr.z*dr.x*dr.z+dr.x*drJI.z*dr.x*dr.z)+0.5*DF*(drJI.z*dr.z+drJI.x*dr.x)+0.25*DDF*(drJI.x*dr.z+drJI.z*dr.x)*(dJI.x*dr.z+dJI.z*dr.x)+0.25*DF*(drJI.z*dJI.z+drJI.x*dJI.x); | |
| BornTerm[CurrentSystem].zxxy+=0.5*DDF*(drJI.x*dr.y*dr.x*dr.z+dr.x*drJI.y*dr.x*dr.z)+0.5*DF*(drJI.y*dr.z)+0.25*DDF*(drJI.x*dr.y+drJI.y*dr.x)*(dJI.x*dr.z+dJI.z*dr.x)+0.25*DF*(drJI.y*dJI.z); | |
| BornTerm[CurrentSystem].xyxy+=0.5*DDF*(drJI.x*dr.y*dr.x*dr.y+dr.x*drJI.y*dr.x*dr.y)+0.5*DF*(drJI.y*dr.y+drJI.x*dr.x)+0.25*DDF*(drJI.x*dr.y+drJI.y*dr.x)*(dJI.x*dr.y+dJI.y*dr.x)+0.25*DF*(drJI.y*dJI.y+drJI.x*dJI.x); | |
| } | |
| } | |
| } | |
| } | |
| } | |
| } | |
| } | |
| } | |
| if(!OmitCationCationCoulombInteractions) | |
| { | |
| // first loop over cation molecules | |
| for(I=0;I<NumberOfCationMolecules[CurrentSystem];I++) | |
| { | |
| TypeMolA=Cations[CurrentSystem][I].Type; | |
| for(ig=0;ig<Components[TypeMolA].NumberOfGroups;ig++) | |
| { | |
| RigidI=Components[TypeMolA].Groups[ig].Rigid; | |
| for(ia=0;ia<Components[TypeMolA].Groups[ig].NumberOfGroupAtoms;ia++) | |
| { | |
| i=Components[TypeMolA].Groups[ig].Atoms[ia]; | |
| if(RigidI) | |
| comA=Cations[CurrentSystem][I].Groups[ig].CenterOfMassPosition; | |
| else | |
| comA=Cations[CurrentSystem][I].Atoms[i].Position; | |
| typeA=Cations[CurrentSystem][I].Atoms[i].Type; | |
| chargeA=Cations[CurrentSystem][I].Atoms[i].Charge; | |
| posA=Cations[CurrentSystem][I].Atoms[i].Position; | |
| // second loop over cation | |
| for(J=I+1;J<NumberOfCationMolecules[CurrentSystem];J++) | |
| { | |
| TypeMolB=Cations[CurrentSystem][J].Type; | |
| for(jg=0;jg<Components[TypeMolB].NumberOfGroups;jg++) | |
| { | |
| RigidJ=Components[TypeMolB].Groups[jg].Rigid; | |
| for(ja=0;ja<Components[TypeMolB].Groups[jg].NumberOfGroupAtoms;ja++) | |
| { | |
| j=Components[TypeMolB].Groups[jg].Atoms[ja]; | |
| if(RigidJ) | |
| comB=Cations[CurrentSystem][J].Groups[jg].CenterOfMassPosition; | |
| else | |
| comB=Cations[CurrentSystem][J].Atoms[j].Position; | |
| typeB=Cations[CurrentSystem][J].Atoms[j].Type; | |
| chargeB=Cations[CurrentSystem][J].Atoms[j].Charge; | |
| posB=Cations[CurrentSystem][J].Atoms[j].Position; | |
| dr.x=posA.x-posB.x; | |
| dr.y=posA.y-posB.y; | |
| dr.z=posA.z-posB.z; | |
| dr=ApplyBoundaryCondition(dr); | |
| rr=SQR(dr.x)+SQR(dr.y)+SQR(dr.z); | |
| if(rr<CutOffChargeChargeSquared[CurrentSystem]) | |
| { | |
| PotentialSecondDerivativeCoulombic(chargeA,chargeB,rr,&energy,&DF,&DDF); | |
| // add contribution to the energy | |
| UCationCationChargeChargeReal[CurrentSystem]+=energy; | |
| f.x=DF*dr.x; | |
| f.y=DF*dr.y; | |
| f.z=DF*dr.z; | |
| // add contribution to the first derivatives | |
| Cations[CurrentSystem][I].Atoms[i].Force.x-=f.x; | |
| Cations[CurrentSystem][I].Atoms[i].Force.y-=f.y; | |
| Cations[CurrentSystem][I].Atoms[i].Force.z-=f.z; | |
| Cations[CurrentSystem][J].Atoms[j].Force.x+=f.x; | |
| Cations[CurrentSystem][J].Atoms[j].Force.y+=f.y; | |
| Cations[CurrentSystem][J].Atoms[j].Force.z+=f.z; | |
| // add contribution to the strain derivative tensor | |
| StrainDerivativeTensor[CurrentSystem].ax+=f.x*dr.x; | |
| StrainDerivativeTensor[CurrentSystem].bx+=f.y*dr.x; | |
| StrainDerivativeTensor[CurrentSystem].cx+=f.z*dr.x; | |
| StrainDerivativeTensor[CurrentSystem].ay+=f.x*dr.y; | |
| StrainDerivativeTensor[CurrentSystem].by+=f.y*dr.y; | |
| StrainDerivativeTensor[CurrentSystem].cy+=f.z*dr.y; | |
| StrainDerivativeTensor[CurrentSystem].az+=f.x*dr.z; | |
| StrainDerivativeTensor[CurrentSystem].bz+=f.y*dr.z; | |
| StrainDerivativeTensor[CurrentSystem].cz+=f.z*dr.z; | |
| VECTOR dJI; | |
| dJI.x=(posB.x-comB.x)-(posA.x-comA.x); | |
| dJI.y=(posB.y-comB.y)-(posA.y-comA.y); | |
| dJI.z=(posB.z-comB.z)-(posA.z-comA.z); | |
| // the corrected com-com distance vector | |
| drJI.x=dr.x+(posB.x-comB.x)-(posA.x-comA.x); | |
| drJI.y=dr.y+(posB.y-comB.y)-(posA.y-comA.y); | |
| drJI.z=dr.z+(posB.z-comB.z)-(posA.z-comA.z); | |
| // add the contributions to the Born-term | |
| BornTerm[CurrentSystem].xxxx+=DDF*drJI.x*dr.x*dr.x*dr.x+2.0*DF*drJI.x*dr.x+DDF*drJI.x*dr.x*dJI.x*dr.x+DF*drJI.x*dJI.x; | |
| BornTerm[CurrentSystem].xxyy+=DDF*drJI.x*dr.x*dr.y*dr.y+0.5*DDF*drJI.x*dr.x*(dJI.y*dr.y+dJI.y*dr.y); | |
| BornTerm[CurrentSystem].xxzz+=DDF*drJI.x*dr.x*dr.z*dr.z+0.5*DDF*drJI.x*dr.x*(dJI.z*dr.z+dJI.z*dr.z); | |
| BornTerm[CurrentSystem].xxyz+=DDF*drJI.x*dr.x*dr.y*dr.z+0.5*DDF*drJI.x*dr.x*(dJI.y*dr.z+dJI.z*dr.y); | |
| BornTerm[CurrentSystem].xxzx+=DDF*drJI.x*dr.x*dr.x*dr.z+DF*(drJI.x*dr.z)+0.5*DDF*drJI.x*dr.x*(dJI.x*dr.z+dJI.z*dr.x)+0.5*DF*(drJI.x*dJI.z); | |
| BornTerm[CurrentSystem].xxxy+=DDF*drJI.x*dr.x*dr.x*dr.y+DF*drJI.x*dr.y+0.5*DDF*drJI.x*dr.x*(dJI.x*dr.y+dJI.y*dr.x)+0.5*DF*(drJI.x*dJI.y); | |
| BornTerm[CurrentSystem].yyyy+=DDF*drJI.y*dr.y*dr.y*dr.y+2.0*DF*drJI.y*dr.y+DDF*drJI.y*dr.y*dJI.y*dr.y+DF*drJI.y*dJI.y; | |
| BornTerm[CurrentSystem].yyzz+=0.5*DDF*(drJI.y*dr.y*dr.z*dr.z+dr.y*drJI.y*dr.z*dr.z)+0.5*DDF*drJI.y*dr.y*(dJI.z*dr.z+dJI.z*dr.z); | |
| BornTerm[CurrentSystem].yyyz+=0.5*DDF*(drJI.y*dr.y*dr.y*dr.z+dr.y*drJI.y*dr.y*dr.z)+DF*(drJI.y*dr.z)+0.5*DDF*drJI.y*dr.y*(dJI.y*dr.z+dJI.z*dr.y)+0.5*DF*(drJI.y*dJI.z); | |
| BornTerm[CurrentSystem].yyzx+=0.5*DDF*(drJI.x*dr.z*dr.y*dr.y+dr.x*drJI.z*dr.y*dr.y)+0.25*DDF*(drJI.x*dr.z+drJI.z*dr.x)*(dJI.y*dr.y+dJI.y*dr.y); | |
| BornTerm[CurrentSystem].yyxy+=0.5*DDF*(drJI.x*dr.y*dr.y*dr.y+dr.x*drJI.y*dr.y*dr.y)+DF*(drJI.x*dr.y)+0.25*DDF*(drJI.x*dr.y+drJI.y*dr.x)*(dJI.y*dr.y+dJI.y*dr.y)+0.5*DF*(drJI.x*dJI.y); | |
| BornTerm[CurrentSystem].zzzz+=DDF*drJI.z*dr.z*dr.z*dr.z+2.0*DF*drJI.z*dr.z+DDF*drJI.z*dr.z*dJI.z*dr.z+DF*drJI.z*dJI.z; | |
| BornTerm[CurrentSystem].zzyz+=0.5*DDF*(drJI.y*dr.z*dr.z*dr.z+dr.y*drJI.z*dr.z*dr.z)+DF*(drJI.y*dr.z)+0.25*DDF*(drJI.y*dr.z+drJI.z*dr.y)*(dJI.z*dr.z+dJI.z*dr.z)+0.5*DF*(drJI.y*dJI.z); | |
| BornTerm[CurrentSystem].zzzx+=0.5*DDF*(drJI.x*dr.z*dr.z*dr.z+dr.x*drJI.z*dr.z*dr.z)+DF*(drJI.x*dr.z)+0.25*DDF*(drJI.x*dr.z+drJI.z*dr.x)*(dJI.z*dr.z+dJI.z*dr.z)+0.5*DF*(drJI.x*dJI.z); | |
| BornTerm[CurrentSystem].zzxy+=0.5*DDF*(drJI.x*dr.y*dr.z*dr.z+dr.x*drJI.y*dr.z*dr.z)+0.25*DDF*(drJI.x*dr.y+drJI.y*dr.x)*(dJI.z*dr.z+dJI.z*dr.z); | |
| BornTerm[CurrentSystem].yzyz+=0.5*DDF*(drJI.y*dr.z*dr.y*dr.z+dr.y*drJI.z*dr.y*dr.z)+0.5*DF*(drJI.z*dr.z+drJI.y*dr.y)+0.25*DDF*(drJI.y*dr.z+drJI.z*dr.y)*(dJI.y*dr.z+dJI.z*dr.y)+0.25*DF*(drJI.z*dJI.z+drJI.y*dJI.y); | |
| BornTerm[CurrentSystem].yzzx+=0.5*DDF*(drJI.x*dr.z*dr.y*dr.z+dr.x*drJI.z*dr.y*dr.z)+0.5*DF*(drJI.x*dr.y)+0.25*DDF*(drJI.x*dr.z+drJI.z*dr.x)*(dJI.y*dr.z+dJI.z*dr.y)+0.25*DF*(drJI.x*dJI.y); | |
| BornTerm[CurrentSystem].yzxy+=0.5*DDF*(drJI.x*dr.y*dr.y*dr.z+dr.x*drJI.y*dr.y*dr.z)+0.5*DF*(drJI.x*dr.z)+0.25*DDF*(drJI.x*dr.y+drJI.y*dr.x)*(dJI.y*dr.z+dJI.z*dr.y)+0.25*DF*(drJI.x*dJI.z); | |
| BornTerm[CurrentSystem].zxzx+=0.5*DDF*(drJI.x*dr.z*dr.x*dr.z+dr.x*drJI.z*dr.x*dr.z)+0.5*DF*(drJI.z*dr.z+drJI.x*dr.x)+0.25*DDF*(drJI.x*dr.z+drJI.z*dr.x)*(dJI.x*dr.z+dJI.z*dr.x)+0.25*DF*(drJI.z*dJI.z+drJI.x*dJI.x); | |
| BornTerm[CurrentSystem].zxxy+=0.5*DDF*(drJI.x*dr.y*dr.x*dr.z+dr.x*drJI.y*dr.x*dr.z)+0.5*DF*(drJI.y*dr.z)+0.25*DDF*(drJI.x*dr.y+drJI.y*dr.x)*(dJI.x*dr.z+dJI.z*dr.x)+0.25*DF*(drJI.y*dJI.z); | |
| BornTerm[CurrentSystem].xyxy+=0.5*DDF*(drJI.x*dr.y*dr.x*dr.y+dr.x*drJI.y*dr.x*dr.y)+0.5*DF*(drJI.y*dr.y+drJI.x*dr.x)+0.25*DDF*(drJI.x*dr.y+drJI.y*dr.x)*(dJI.x*dr.y+dJI.y*dr.x)+0.25*DF*(drJI.y*dJI.y+drJI.x*dJI.x); | |
| } | |
| } | |
| } | |
| } | |
| } | |
| } | |
| } | |
| } | |
| } | |