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5631464 | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 | """Test preprocessing client."""
import os
from pathlib import Path
import pytest
from haddock.clis.cli_pp import ap, main
from . import broken_pdb, corrected_pdb
def test_pp_cli():
"""
Test `haddock-pp` client with broken PDB.
This is the same PDB used to test the preprocessing library.
"""
main(broken_pdb)
output = Path(Path.cwd(), 'broken_processed.pdb')
assert output.exists()
result = output.read_text().strip(os.linesep)
expected = corrected_pdb.read_text().strip(os.linesep)
assert result == expected
output.unlink()
@pytest.mark.parametrize(
"arg,key,value",
[
('-d', "dry", True),
('--dry', "dry", True),
('-t file1.top file2.top', "topfile", ['file1.top', 'file2.top']),
('--topfile file1.top file2.top', "topfile", ['file1.top', 'file2.top']), # noqa: E501
('-s somesuffix', 'suffix', 'somesuffix'),
('--suffix somesuffix', 'suffix', 'somesuffix'),
('-odir somedir', 'output_directory', Path('somedir')),
('--output-directory somedir', 'output_directory', Path('somedir')),
]
)
def test_cli_args(arg, key, value):
"""Test adding arguments to client."""
cmd = ap.parse_args(('some-file.pdb ' + arg).split())
assert value == vars(cmd)[key]
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