| """Test libio.""" |
| import tempfile |
| from pathlib import Path |
| import shutil |
|
|
| import pytest |
|
|
| from haddock.libs.libio import ( |
| clean_suffix, |
| dot_suffix, |
| extract_files_flat, |
| file_exists, |
| folder_exists, |
| read_from_yaml, |
| write_dic_to_file, |
| write_nested_dic_to_file, |
| ) |
|
|
| from . import emptycfg, haddock3_yaml_cfg_examples |
| from . import golden_data |
|
|
|
|
| @pytest.mark.parametrize( |
| "cfg", |
| [ |
| emptycfg, |
| haddock3_yaml_cfg_examples, |
| ], |
| ) |
| def test_read_from_yaml(cfg): |
| """Test read from yaml file.""" |
| result = read_from_yaml(cfg) |
| assert isinstance(result, dict) |
|
|
|
|
| def test_write_nested_dic_to_file(): |
| """Test write nested dictionary to file.""" |
| f = tempfile.NamedTemporaryFile(delete=False) |
| write_nested_dic_to_file( |
| data_dict={1: {"something": "something"}}, |
| output_fname=f.name) |
|
|
| assert Path(f.name).exists() |
| assert Path(f.name).stat().st_size != 0 |
|
|
| Path(f.name).unlink() |
|
|
|
|
| def test_write_dic_to_file(): |
| """Test write dictionary to file.""" |
| f = tempfile.NamedTemporaryFile(delete=False) |
| write_dic_to_file( |
| data_dict={"something": "something"}, |
| output_fname=f.name) |
|
|
| assert Path(f.name).exists() |
| assert Path(f.name).stat().st_size != 0 |
|
|
| Path(f.name).unlink() |
|
|
|
|
| @pytest.mark.parametrize( |
| "in_,expected", |
| [ |
| (".ext", ".ext"), |
| ("ext", ".ext"), |
| (".out.gz", ".out.gz"), |
| ("out.gz", ".out.gz"), |
| ] |
| ) |
| def test_dot_suffix(in_, expected): |
| result = dot_suffix(in_) |
| assert result == expected |
|
|
|
|
| @pytest.mark.parametrize( |
| "in_,expected", |
| [ |
| (".ext", "ext"), |
| ("ext", "ext"), |
| (".out.gz", "out.gz"), |
| ("out.gz", "out.gz"), |
| ] |
| ) |
| def test_clean_suffix(in_, expected): |
| result = clean_suffix(in_) |
| assert result == expected |
|
|
|
|
| @pytest.mark.parametrize( |
| 'i,expected', |
| [ |
| (Path(__file__), Path(__file__)), |
| (str(Path(__file__)), Path(__file__)), |
| ], |
| ) |
| def test_file_exists(i, expected): |
| """.""" |
| r = file_exists(i) |
| assert r == expected |
|
|
|
|
| @pytest.mark.parametrize( |
| 'i', |
| [ |
| 'some_bad_path', |
| Path(__file__).parent, |
| ], |
| ) |
| def test_file_exists_wrong(i): |
| """.""" |
| with pytest.raises(ValueError): |
| file_exists(i) |
|
|
|
|
| def test_folder_exists(): |
| """.""" |
| r = folder_exists(Path(__file__).parent) |
| assert r == Path(__file__).parent |
|
|
|
|
| @pytest.mark.parametrize( |
| 'i', |
| [ |
| 'some_bad_path', |
| Path(__file__), |
| str(Path(__file__)), |
| ], |
| ) |
| def test_folder_exists_wrong(i): |
| """.""" |
| with pytest.raises(ValueError): |
| folder_exists(i) |
|
|
|
|
| def test_folder_exists_wrong_othererror(): |
| with pytest.raises(TypeError): |
| folder_exists("some_bad_path", exception=TypeError) |
|
|
|
|
| def test_extract_files_flat(monkeypatch): |
| """Test extract_files_flat.""" |
| with tempfile.TemporaryDirectory() as tempdir: |
| reference_archive = Path(golden_data, "ambig.tbl.tgz") |
| shutil.copy(reference_archive, tempdir) |
| monkeypatch.chdir(tempdir) |
| archive = Path(reference_archive.name) |
| |
| extract_files_flat(archive, ".") |
| assert Path("ambig_1.tbl").exists() |
|
|
