The dataset holds data, not output. results/ was derived tables from pipeline
runs - those belong in the code repository next to the script that made them,
and mixing them in makes the dataset unusable as an input and impossible to keep
current.
Permitted: txt, md, tsv.gz, json, fastq.gz, fa.gz, sam, bam. Also removed the
emoji markers from the two text files.
ci/SRR1763769_umi0.5pct.fq.gz is all the reads of 0.5% of the barcodes of a
public HIV-1 Primer ID library -- never 0.5% of the reads, which at 16 reads per
molecule would give molecules seen once each and destroy the size distribution
the fixture exists to preserve. 15.77 reads/barcode against the library's 16.05.
results/ holds the derived tables behind the numbers the documentation quotes,
so a claim can be checked without re-running anything.
Raw ENA runs and simulated corpora are not here: SOURCES.md carries the command
that regenerates each instead of the bytes. Nothing from a private cluster.
