Source positive/negative and pairing flags are not binding outcomes or availability gates. Normalize public pairing and experimental labels to unknown and remove all flag-based linkage exclusions. Preserve native coordinate provenance separately. Two source/audit regressions reproduce the exclusion; revised self-check and literal-context tests pass.
Rebuild every raw source batch and all links. Preserve all11911 coordinate contents and both archive bytes, plus every prior sequence/context/confidence observation and link. Catalogue has16118 sequence-state links for4777 structures and7292 records; no assay outcomes are exported. Strict full archive/link audit passes.
Add109 supplied coordinate contents and refresh current-record links
All5608 requested raw coordinates are accounted for; all5499 prior coordinates are byte-unchanged. Preserve every prior catalogue content, metadata observation and record link. Add109 neutral content-addressed coordinates; three reported assignments add six original/repaired-state links to three current records. Constructed mismatches remain separate. No assay outcomes or private identifiers enter the deposit.
Catalogue11911 distinct contents;13260 structural observations;16116 links to7291 current records. Strict complete archive/link audit and source digest coverage pass. Current database315921records; scientific model parameters and all prior metadata observations unchanged.
Refresh source-row snapshots after sequence-bearing chain curation
Update 1059 row-coordinate snapshots across126 stable record IDs after source-supported consolidations in VDJdb issue1371. Preserve every association, sequence/context snapshot and scientific proof; strict link audit passes.
Refresh chunk row snapshots after VDJdb duplicate correction
Update only current_chunk_row on 27,976 links across 6,139 stable record IDs. All other cells, structure associations and original/repaired proof flags are unchanged. No links or coordinates are added or removed. Strict link and complete archive audits pass against VDJdb candidate 1e8415c. Refs antigenomics/vdjdb-db#1369.
Add content-addressed supplemental coordinates and verified record links
