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#-*- coding: utf-8 -*-
import argparse
import numpy as np
parser = argparse.ArgumentParser(description='Configuration file')
arg_lists = []
def add_argument_group(name):
arg = parser.add_argument_group(name)
arg_lists.append(arg)
return arg
def str2bool(v):
return v.lower() in ('true', '1')
# Network
net... | MichelDeudon/neural-combinatorial-optimization-rl-tensorflow | Ptr_Net_TSPTW/config.py | Python | mit | 4,073 | [
"Gaussian"
] | 52eeb4b3449caa4cedb36953c6a4d14d8d7f837659cd96fd5b8d065a11b5912e |
"""Module of objects that resemble or contain a profile, i.e. a 1 or 2-D f(x) representation."""
import enum
import warnings
from typing import Union, Tuple, Sequence, List, Optional
import argue
import matplotlib.pyplot as plt
import numpy as np
from matplotlib.patches import Circle as mpl_Circle
from scipy import nd... | jrkerns/pylinac | pylinac/core/profile.py | Python | mit | 53,985 | [
"Gaussian"
] | 1a615432a1bf113da6b49fad0f6e32588b7bb33630330c178a40ebe2e14ef00f |
# We only import librairies needed for plotting
# Other librairies are imported in the class definition file, G3D_class.py,
# which contains all process and variables function definition.
import matplotlib
matplotlib.use('pdf')
import matplotlib.pyplot as plt
import matplotlib.dates as mdates
import datetime as dt
im... | acapet/GHER-POSTPROC | Examples/EasyExample_NEMO.py | Python | gpl-3.0 | 3,415 | [
"NetCDF"
] | 25460f5334317ac28dfa294510e63a83d3d429e10942e6f3d7a0e53c860a687b |
import csv
import heapq
import numpy as np
from ase.tasks.io import read_json
ann_fontsize = 'small'
label_fontsize = 12
def most_common_value(values, precision=None):
import heapq
# find the most common value
if precision is not None:
vs = [round(v, precision) for v in values]
else:
... | suttond/MODOI | ase/test/tasks/analyse.py | Python | lgpl-3.0 | 14,864 | [
"ASE"
] | 86bf563d491deaa2e2132ca7f99bb2c85705a0380a78d111d19aa1f706cee115 |
#!/usr/bin/env python
# Copyright 2014-2019 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# U... | sunqm/pyscf | pyscf/grad/uks.py | Python | apache-2.0 | 11,261 | [
"PySCF"
] | cdac03c2803fc929ec2d3e4e6a776019ce51ddb4e0dd5104356e16ef608363af |
"""Analyze python import statements."""
from __future__ import (absolute_import, division, print_function)
__metaclass__ = type
import ast
import os
from . import types as t
from .util import (
display,
ApplicationError,
)
from .data import (
data_context,
)
VIRTUAL_PACKAGES = set([
'ansible.module... | amenonsen/ansible | test/lib/ansible_test/_internal/import_analysis.py | Python | gpl-3.0 | 8,975 | [
"VisIt"
] | b8e6b9b184ce5b9b03135e2d6801267641ec69d9be9c8e76cc47d49cd3384a9a |
# Copyright 2012, 2013 The GalSim developers:
# https://github.com/GalSim-developers
#
# This file is part of GalSim: The modular galaxy image simulation toolkit.
#
# GalSim is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software... | mardom/GalSim | examples/demo6.py | Python | gpl-3.0 | 9,206 | [
"Galaxy",
"Gaussian"
] | 7c09d9d4f68a7f12f22e361f4cd949ee176ea743c2a524ea35bfebcd99d6d92b |
#!/usr/bin/python
# -*- coding: utf-8 -*-
#
# --- BEGIN_HEADER ---
#
# upload - Plain and efficient file upload back end
# Copyright (C) 2003-2012 The MiG Project lead by Brian Vinter
#
# This file is part of MiG.
#
# MiG is free software: you can redistribute it and/or modify
# it under the terms of the GNU General P... | heromod/migrid | mig/shared/functionality/upload.py | Python | gpl-2.0 | 8,294 | [
"Brian"
] | d02dd8dae12413090518d3f33aceabe96be9f49c2c19bcf5b06319dd87bc96c8 |
#!/usr/bin/python
import sys
import numpy as np
from scipy import linalg as li
from numpy import float_
from numpy import absolute as abs
from numpy import random as ran
import matplotlib
from scipy.signal.signaltools import convolve2d
from scipy.interpolate.interpolate import interp1d
import ssp_Hector_Fit3D_my as my... | Delosari/dazer | bin/lib/ssp_functions/ssp_Hector_Fit3D_tools.py | Python | mit | 81,907 | [
"Gaussian"
] | d794bd23aa7d7265097dc2c20c511ef5e16fd44f7d49a8d272b096a7694b34a1 |
from setuptools import setup, find_packages
import imp
version = imp.load_source('muda.version', 'muda/version.py')
setup(
name='muda',
version=version.version,
description='Musical data augmentation',
author='Brian McFee',
author_email='brian.mcfee@nyu.edu',
url='http://github.com/bmcfee/mud... | bmcfee/muda | setup.py | Python | isc | 1,475 | [
"Brian"
] | 751dfb95adc4937059153d408bf197a8dbcd74e44a276bffcdaa0296a6d077f2 |
##############################################################################
# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-64... | EmreAtes/spack | lib/spack/docs/tutorial/examples/Makefile/1.package.py | Python | lgpl-2.1 | 2,011 | [
"Bowtie"
] | 79d62789cb99a8588c840d07523dc8c10406f2d947348c8c9836a0a798fabf01 |
import sys
import getopt
import random
import time
import numpy
import math
import arcpy
import csv
from arcpy import env
import my_tools as tools
# Efficiency: 0' 10'' importing packages
# 6' 17'' retrieving day data for January 2010 (500,000 rows read, 1,326 rows/sec), assembly of shapefile... | blt2589/Chicago | Exercise3.py | Python | mit | 9,303 | [
"Gaussian"
] | cbbd00799368ead8a823dbe076a1e72ef54c4ea16754540b7e37542060d2ff04 |
# -*- coding: utf-8 -*-
"""
Created on Fri Aug 3 02:55:49 2018
@author: Yongsoo Yang, UCLA Physics & Astronomy
yongsoo.ysyang@gmail.com
"""
from .fparameters_python import fparameters_python
import numpy as np
# main function for calculating R1 factor
def calc_R1_function_python(atomPos,atomType,Projection... | OpenChemistry/materialsdatabank | materialsdatabank/r1/calc_R1_function_python_GEN.py | Python | bsd-3-clause | 15,663 | [
"Gaussian"
] | a55af264c2cd3ba2773de5fff7acba6e98b216576b7641b62804a6df27e38988 |
# Copyright (c) 2015, Ecole Polytechnique Federale de Lausanne, Blue Brain Project
# All rights reserved.
#
# This file is part of NeuroM <https://github.com/BlueBrain/NeuroM>
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are ... | wizmer/NeuroM | neurom/features/tests/test_neuritefunc.py | Python | bsd-3-clause | 13,695 | [
"NEURON"
] | cce9861850de4f6a40aad8310aa0794a08fb020518abd1686e979752c4b9bd75 |
#--------------------------------------------------------------------------
# Software: InVesalius - Software de Reconstrucao 3D de Imagens Medicas
# Copyright: (C) 2001 Centro de Pesquisas Renato Archer
# Homepage: http://www.softwarepublico.gov.br
# Contact: invesalius@cti.gov.br
# License: GNU ... | paulojamorim/invesalius3 | invesalius/gui/task_exporter.py | Python | gpl-2.0 | 15,185 | [
"VTK"
] | 25a971f96db04cfb7147ae7025b61be257b12e7582d86b0920f7051d6b848711 |
# vim: set expandtab shiftwidth=2 softtabstop=2:
# difmap
# "genmap" - generate a new map model
#
from TEMPy.MapParser import MapParser
from TEMPy.ScoringFunctions import ScoringFunctions
from TEMPy.StructureParser import PDBParser
from TEMPy.StructureBlurrer import StructureBlurrer
from TEMPy.class_arg import Temp... | OniDaito/ChimeraXTempy | src/difmap.py | Python | mit | 4,685 | [
"ChimeraX"
] | 6677ba5aae17d597ec350413e85da0bd6b694dacb137c22c6480cdc213585aaa |
# This file is part of PyEMMA.
#
# Copyright (c) 2015, 2014 Computational Molecular Biology Group, Freie Universitaet Berlin (GER)
#
# PyEMMA is free software: you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License as published by
# the Free Software Foundation, either vers... | gph82/PyEMMA | pyemma/coordinates/tests/test_assign.py | Python | lgpl-3.0 | 10,159 | [
"Gaussian"
] | 02daaa38178e82cdc85f44f89c15c54d7c93c6bfbb20933c67d9d1bd72c1ffb1 |
# -*- coding: utf-8 -*-
import itertools
import os
import re
import urllib
import logging
import datetime
import urlparse
from collections import OrderedDict
import warnings
import pytz
from flask import request
from django.core.urlresolvers import reverse
from modularodm import Q
from modularodm import fields
from m... | lyndsysimon/osf.io | website/project/model.py | Python | apache-2.0 | 125,565 | [
"VisIt"
] | f0cdb8af770b57e8d8aeecaa5878b397b22e6439052e64c0efdc88dc21679d68 |
from lost_visions import models
__author__ = 'ubuntu'
def add_irish_life_linked_images():
to_link = {
"11126612333":
[
{
"name": "The Meeting Of Ned And Kathleen",
"file": "PAGE 182 The Meeting Of Ned And Kathleen.jpg"
}... | CSCSI/Lost-Visions | lost_visions/utils/data_import.py | Python | apache-2.0 | 6,758 | [
"VisIt"
] | 06d4628aa4617a576aed063629788f654abcc5dd49f2f6e024e24904d4756a4b |
import dendropy
import numpy as np
from io_util import *
def delimit_newick(infile_name):
from Bio import Phylo
from cStringIO import StringIO
tmp_tree = Phylo.read(infile_name, 'newick')
for t in tmp_tree.get_terminals():
t.name = "'"+t.name+"'"
tree_string = StringIO()
Phylo.write(tmp_tree, tree_string, f... | doerlbh/Indie-nextflu | augur/src/tree_util.py | Python | agpl-3.0 | 6,886 | [
"Biopython"
] | b89b9b3551af570bb8aff51948358a34019db49604c5dfd85f337fcee1f9adda |
# Copyright 2018 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# https://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, ... | google/data-driven-discretization-1d | pde_superresolution/scripts/create_exact_data.py | Python | apache-2.0 | 4,584 | [
"NetCDF"
] | 2b50f4c302a6688f81f674664d2b11c92d4565ece864ba15b8e1530ed59dd504 |
import vtk
import matplotlib.cm as cm
import sys
LABEL_NAMES = [\
'olfactory bulb',
'cerebral cortex',
'lateral septal nuclei',
'striatum',
'globus pallidus',
'thalamus',
'hypothalamus',
'hippocampal formation',
'superior colliculus',
'inferior colliculus',
'cerebellum',
'fimbria',
'internal capsule',
'ventricle',
've... | neuroinformatics/bah2015_registration | vtk_test/draw_intensity.py | Python | mit | 5,528 | [
"VTK"
] | 783f6480409e7dcd7577eedfb8a56d6e6f92480752222c3f52d8139a00438eb8 |
#
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not us... | jasonkuster/incubator-beam | sdks/python/apache_beam/typehints/typehints.py | Python | apache-2.0 | 35,929 | [
"VisIt"
] | 90e1131fa6dc4bb4c1dddfb6f885a483178b2f1fad50ef53088c7aa35e2c4091 |
import numpy as np
import util
from datetime import datetime
from scipy.stats import norm
import better_exceptions
from scipy.stats import multivariate_normal as mvn
class NaiveBayers(object):
def __init__(self):
# Gaussian deviation
self.gaussians = dict()
# Class priors
self.prio... | adexin/Python-Machine-Learning-Samples | Naive_bayes_mnist/nb_covariance.py | Python | mit | 2,425 | [
"Gaussian"
] | f785d783acb2128b123318dac52775847c9d3e88b6334b27218a00de1d0aa9c5 |
"""Check that reading and writing masses in .con files is consistent."""
import tempfile
import os
import shutil
from numpy import asarray
import ase.lattice.compounds
import ase.data
import ase.io
# Error tolerance.
TOL = 1e-8
data = ase.lattice.compounds.B2(['Cs', 'Cl'], latticeconstant=4.123,
... | misdoro/python-ase | ase/test/eon/eon_masses.py | Python | gpl-2.0 | 959 | [
"ASE"
] | 868d2ae5d1a62ef44224aa3ab3b4053a12f477ef46350f46493d8bb7c4799e66 |
#!/usr/bin/python
#
# Created on Aug 25, 2016
# @author: Gaurav Rastogi (grastogi@avinetworks.com)
# Eric Anderson (eanderson@avinetworks.com)
# module_check: supported
#
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General... | fernandezcuesta/ansible | lib/ansible/modules/network/avi/avi_webhook.py | Python | gpl-3.0 | 3,761 | [
"VisIt"
] | 6d999573cd83d665cf9ba5cc0c12bafb27e74626358d4f39d813293a29e844fa |
#!/usr/bin/env python3
import argparse
import io
import zipfile
from collections import defaultdict
from datetime import date
oboInOwl = {
"SynonymTypeProperty": "synonym_type_property",
"hasAlternativeId": "has_alternative_id",
"hasBroadSynonym": "has_broad_synonym",
"hasDbXref": "database_cross_ref... | obophenotype/ncbitaxon | src/ncbitaxon.py | Python | bsd-3-clause | 12,475 | [
"BLAST"
] | 6150c014a6ee6362518c025ef996ec42563f9e973ca63052c45af4cf4cd06b30 |
# -*- coding: utf-8 -*-
# <nbformat>3.0</nbformat>
# <headingcell level=1>
# Design of Primers for Functional Genes
# <markdowncell>
# Author: Teotonio Soares de Carvalho
# <markdowncell>
# Please contact me at teotonio@msu.edu if you have any suggestions or questions.
# <headingcell level=2>
# Setup for Parall... | teodecarvalho/PrimerDesign | functions_definition.py | Python | mit | 110,886 | [
"BLAST",
"Biopython"
] | 284db1ec8f630f46d2591d49f412376ebf942ec1af8be11f4136ee3864d356ab |
"""
Retrieve logging information for a DIRAC job
"""
import DIRAC
from DIRAC.Core.Base import Script
from DIRAC.Core.DISET.RPCClient import RPCClient
import os, shutil, datetime
from COMDIRAC.Interfaces import DSession
from COMDIRAC.Interfaces.Utilities.DCommands import ArrayFormatter
class Params:
def __init__... | pigay/COMDIRAC | Interfaces/scripts/dlogging.py | Python | gpl-3.0 | 1,579 | [
"DIRAC"
] | b5b089e9888e3ddabbe5b98db0e226cc61a9c6e339693d40a8677ebb0e65f867 |
"""
This is our testing framework.
Goals:
* it should be compatible with py.test and operate very similarly
(or identically)
* doesn't require any external dependencies
* preferably all the functionality should be in this file only
* no magic, just import the test file and execute the test functions, that's it
* po... | ChristinaZografou/sympy | sympy/utilities/runtests.py | Python | bsd-3-clause | 82,022 | [
"VisIt"
] | 0d76da0d99f8725281a65afa6194d7517feecb8d75389043a19c99345256f535 |
# Copyright (c) 2012, CyberPoint International, LLC
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright
# notice, this lis... | CyberPoint/libpgm | libpgm/nodedata.py | Python | bsd-3-clause | 7,041 | [
"Gaussian"
] | 1d1c5195f77606b774ad3835db2a6fd7582a85d9068b69b550f2f28098c6c997 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
#
# --- BEGIN_HEADER ---
#
# ssh - remote command wrappers using ssh/scp
# Copyright (C) 2003-2014 The MiG Project lead by Brian Vinter
#
# This file is part of MiG.
#
# MiG is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public ... | heromod/migrid | mig/shared/ssh.py | Python | gpl-2.0 | 13,910 | [
"Brian"
] | 0401efa85e799c95071b6cbfb21bae770c81b8f2964469c93ae28c96b79d2409 |
# -*- coding: utf-8 -*-
from __future__ import unicode_literals
from django.db import models, migrations
import uuid
class Migration(migrations.Migration):
dependencies = [
('visit', '0029_caregiver_key'),
]
operations = [
migrations.AlterField(
model_name='caregiver',
... | koebbe/homeworks | visit/migrations/0030_auto_20150614_1814.py | Python | mit | 441 | [
"VisIt"
] | 551e61ebbf67e90f7280e88e852109feda384eb9b7093907fff806d74f4eee9e |
#!/usr/bin/env python
################################################################################
# Copyright (C) 2014, 2015 GenAP, McGill University and Genome Quebec Innovation Centre
#
# This file is part of MUGQIC Pipelines.
#
# MUGQIC Pipelines is free software: you can redistribute it and/or modify
# it und... | ccmbioinfo/mugqic_pipelines | pipelines/chipseq/chipseq.py | Python | lgpl-3.0 | 34,986 | [
"BWA"
] | 2aa7e664a96c7c2550af13a7f5ccdbdba44233b37519a6b2e2c6646df098b4f1 |
#!/usr/bin/env python
# multimeter-file.py
#
# This file is part of NEST.
#
# Copyright (C) 2004 The NEST Initiative
#
# NEST is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 2 of the License, o... | gewaltig/cython-neuron | pynest/examples/multimeter_file.py | Python | gpl-2.0 | 2,695 | [
"NEURON"
] | d6d705bf1a9b73ac5a80eca95edbe3bd9d0b0b483677a688348554eca1e0ee50 |
"""
==========================================
Symmetric Diffeomorphic Registration in 2D
==========================================
This example explains how to register 2D images using the Symmetric Normalization
(SyN) algorithm proposed by Avants et al. [Avants09]_ (also implemented in
the ANTS software [Avants11]_... | StongeEtienne/dipy | doc/examples/syn_registration_2d.py | Python | bsd-3-clause | 7,049 | [
"Gaussian"
] | 0bd45ddf9aeaf5b9cd83930be2f4e18d6d40df533075b323ff919b3c55179909 |
from __future__ import division
import numpy as np
import matplotlib.pyplot as plt
from matplotlib.pyplot import cm
import string
from neuron import h
import numbers
# a helper library, included with NEURON
h.load_file('stdlib.hoc')
h.load_file('import3d.hoc')
class Cell:
def __init__(self,name='neuron',soma=None... | ahwillia/PyNeuron-Toolbox | PyNeuronToolbox/morphology.py | Python | mit | 18,827 | [
"NEURON"
] | 12c1ed2e80852774686ae6e0b8e5ac8453e36173ef6d9c55c2e8138e4b552e03 |
from pylab import figure,scatter,contour,show,legend,connect
from numpy import array, append, arange, reshape, empty, exp
from modshogun import Gaussian, GMM
from modshogun import RealFeatures
import util
util.set_title('EM for 2d GMM example')
#set the parameters
min_cov=1e-9
max_iter=1000
min_change=1e-9
cov_type=0... | AzamYahya/shogun | examples/undocumented/python_modular/graphical/em_2d_gmm.py | Python | gpl-3.0 | 2,425 | [
"Gaussian"
] | 7ddde398afcde55d0a6ccb2e30c70acc01dc5cb59b4cb4ce8919e1c80dbfee7f |
#!/usr/bin/env python
import os
import sys
sys.path.insert(0, os.path.abspath('lib'))
from ansible import __version__, __author__
try:
from setuptools import setup, find_packages
except ImportError:
print("Ansible now needs setuptools in order to build. Install it using"
" your package manager (us... | attakei/ansible | setup.py | Python | gpl-3.0 | 1,864 | [
"Galaxy"
] | b4cba7ac75d0565816750d28c2f7a12193e2cde154710432f43bef36d71cbb96 |
# read statistics from ASCII files and put them in netCDF
# Chiel van Heerwaarden, 2012 -- created
# Cedrick.Ansorge@gmail.com, 2013 -- Some generalizations
#
import gzip as gz
import netCDF4
import subprocess
import array as arr
import os
from pylab import *
def addGroup(gDict,gLine,ig):
garr=gLine.split(... | turbulencia/tlab | scripts/python/stats2nc.py | Python | gpl-3.0 | 10,004 | [
"NetCDF"
] | 505ed66996e05a1153439bc248fdc75f3aab8385d32b351a54a10634d38d0dc8 |
from . import core, utils
import cgt
import ctypes, os.path as osp, hashlib, numpy as np, sys, subprocess, string, os, time, traceback, cPickle
from collections import defaultdict, namedtuple
from StringIO import StringIO
import logging
def function(inputs, outputs, dbg=None, updates=None, givens=None):
assert isi... | davmre/cgt | cgt/compilation.py | Python | mit | 36,421 | [
"VisIt"
] | 07f7da77f43b4250c7cc964af8a11cb4c31681135420fbf5d0532c8c19066ed0 |
# Copyright (C) 2012,2013
# Max Planck Institute for Polymer Research
# Copyright (C) 2008,2009,2010,2011
# Max-Planck-Institute for Polymer Research & Fraunhofer SCAI
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the terms of t... | BackupTheBerlios/espressopp | src/interaction/unittest/PTestLennardJones.py | Python | gpl-3.0 | 2,362 | [
"ESPResSo"
] | e9033c84cfb14882f65be528885ef8219ee646cf462fa7c173640544b2404eca |
# Configuration file for the Sphinx documentation builder.
#
# This file only contains a selection of the most common options. For a full
# list see the documentation:
# https://www.sphinx-doc.org/en/master/usage/configuration.html
# -- Path setup --------------------------------------------------------------
# If ex... | The-OpenROAD-Project/OpenROAD | docs/conf.py | Python | bsd-3-clause | 4,852 | [
"Amber"
] | 2be1317051a9237454b07f1c7074c2350eaa505f078d985fec32a0f1fb483f48 |
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2000-2007 Donald N. Allingham
# Copyright (C) 2008 Brian G. Matherly
# Copyright (C) 2010 Jakim Friant
# Copyright (C) 2011 Paul Franklin
#
# This program is free software; you can redistribute it and/or modify
# it under the terms o... | pmghalvorsen/gramps_branch | gramps/plugins/tool/verify.py | Python | gpl-2.0 | 56,750 | [
"Brian"
] | 298c9a8825171555ed34b6be6657999ac126b6477b5181fa5b3d1e3cc9dd16d7 |
"""
Utility functions.
@author J. Chiang <jchiang@slac.stanford.edu>
"""
#
# $Id: utilities.py,v 1.2 2003/10/05 16:30:40 jchiang Exp $
#
import math, numarray
def locate(x, xx):
"""
Binary search algorithm.
usage: indx = locate(x, xx)
x = input array; it must be in ascending order.
xx = the searc... | plasmodic/hippodraw | python/utilities.py | Python | gpl-2.0 | 3,773 | [
"Gaussian"
] | ae69458df92e4e994d905f934c3a30b4d5de34d70704c5a10203eaf89dc7eba6 |
##############################################################################
# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-64... | mfherbst/spack | var/spack/repos/builtin/packages/r-biovizbase/package.py | Python | lgpl-2.1 | 2,832 | [
"Bioconductor"
] | eb8707e5a037e07ab64d4b3c5fbd9f81c8dd91da9885903235bcc986498da96e |
"""scandir, a better directory iterator and faster os.walk(), now in the Python 3.5 stdlib
scandir() is a generator version of os.listdir() that returns an
iterator over files in a directory, and also exposes the extra
information most OSes provide while iterating files in a directory
(such as type and stat informatio... | NixaSoftware/CVis | venv/lib/python2.7/site-packages/scandir.py | Python | apache-2.0 | 23,805 | [
"VisIt"
] | bbf0b064748b93a19a61cf7c9b17f00b9473d21f30036b19bc9a58e5caa01592 |
from django.db import models
from django.contrib.auth.models import User
class ParamDict(models.Model):
name = models.CharField(max_length=50)
def __unicode__(self):
return self.name
class KeyVal(models.Model):
container = models.ForeignKey(ParamDict, db_index=True)
key = models.CharField(ma... | gsarma/ChannelWorm | channelworm/ion_channel/models.py | Python | mit | 14,099 | [
"NEURON"
] | a65f5aa98625d38b60e89306bfbf4ad2fa6ed1080e71a6ebc506a48041ddccce |
# Copyright (c) 2013-2016, Massachusetts Institute of Technology
# Copyright (c) 2016-2022, Alex Gorodetsky
#
# This file is part of GPEXP:
# Author: Alex Gorodetsky alex@alexgorodetsky
#
# GPEXP is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published ... | goroda/GPEXP | gpExp/utilities.py | Python | gpl-2.0 | 8,224 | [
"Gaussian"
] | 9eb88a3f679b321bb038f444cef1669c2c3e21367ee0d83ce02a0f414b852362 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
################################################################################
#
# RMG - Reaction Mechanism Generator
#
# Copyright (c) 2002-2012 Prof. Richard H. West (r.west@neu.edu),
# Prof. William H. Green (whgreen@mit.edu)
# ... | pierrelb/RMG-Py | rmgpy/qm/main.py | Python | mit | 11,154 | [
"Gaussian",
"MOPAC"
] | cad6e1c7ea391babd8dcbf68002f8ca6cca07f1fdeea71a963ac3f5699065f77 |
import sys
import re
import subprocess as sp
# This script complements autoDefine.py.
#
# Its member functions determine what input to print and
# then print that input to the define.input file
#
# FOR THOSE WHO MODIFY/ADD FUNCTIONALITY:
#
# All functions in commandWriters.py must have at least the following argum... | magee256/TurbomoleScripts | SetUp/autoDefine/commandWriters.py | Python | mit | 25,318 | [
"TURBOMOLE"
] | fd6a237503e8c3607bd55313a92fdbf47bef4356d07570364195cb235c3ad257 |
#!/usr/bin/env python
import rospkg
import cv2
import datetime
import numpy as np
import pandas as pd
from imblearn.under_sampling import RandomUnderSampler
from sklearn.ensemble import GradientBoostingClassifier
# from sklearn.gaussian_process import GaussianProcessClassifier
from sklearn.linear_model import SGDCla... | buckbaskin/stopsign | src/v1/sgd_optimize.py | Python | mit | 9,137 | [
"Gaussian"
] | 3338a06b23906085bfa4069f9eec53d947c99056aa02a719ef31f35793ec466a |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""
Tests/Examples for sloth.inst.rowland (pantograph movements part)
"""
__author__ = "Mauro Rovezzi"
__email__ = "mauro.rovezzi@gmail.com"
__license__ = "BSD license <http://opensource.org/licenses/BSD-3-Clause>"
import os, sys
import math
import numpy as np
import m... | maurov/xraysloth | examples/rowland_pantograph_tests.py | Python | bsd-3-clause | 9,042 | [
"CRYSTAL"
] | 03922a2645ffcbd0e6d00f4e9f61a47728479a830c28a973419ffcea608cfe47 |
import datetime
from django.core.management.base import NoArgsCommand
from django.core.urlresolvers import reverse
from django.db import connection
from django.db.models import Q, F
from askbot.models import User, Post, PostRevision, Thread
from askbot.models import Activity, EmailFeedSetting
from django.utils.translat... | erichegt/askbot-devel | askbot/management/commands/send_email_alerts.py | Python | gpl-3.0 | 21,850 | [
"VisIt"
] | b3e29ab0c2f73128870d5fb28551b852e3e81d18ab0af5f6dcbab4bcd1fa3eac |
from django.views.generic.base import TemplateView
from django.views.generic.list import ListView
from django.views.generic.detail import DetailView
from django.contrib.auth.mixins import LoginRequiredMixin
from .models import Client, Dependent, Visit
class ClientSummaryView(TemplateView):
template_name = "client... | tomp/food_pantry | clients/views.py | Python | mit | 1,071 | [
"VisIt"
] | 01390ca403d3c99fd33bb13d813261f95dd2b5b36c4835bfb3ee7c3d90eefc90 |
# Made by Mr. - Version 0.3 by kmarty and DrLecter
# Shadow Weapon Coupons contributed by BiTi for the Official L2J Datapack Project
# Visit http://forum.l2jdp.com for more details
import sys
from com.l2scoria.gameserver.model.quest import State
from com.l2scoria.gameserver.model.quest import QuestState
from com.l2scor... | zenn1989/scoria-interlude | L2Jscoria-Game/data/scripts/quests/406_PathToElvenKnight/__init__.py | Python | gpl-3.0 | 5,385 | [
"VisIt"
] | 11c1cd1042aff3e0860ba8f954937684714521e808c3839f4cdb3272a7356cd3 |
# Copyright 2018 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, s... | blowmage/gcloud-ruby | google-cloud-speech/synth.py | Python | apache-2.0 | 9,603 | [
"VisIt"
] | 777a72e5352e79b68d4b4b171d96f25fbaf3fa27ad42dfe45e6d5831f55000b5 |
r"""OS routines for NT or Posix depending on what system we're on.
This exports:
- all functions from posix, nt, os2, or ce, e.g. unlink, stat, etc.
- os.path is one of the modules posixpath, or ntpath
- os.name is 'posix', 'nt', 'os2', 'ce' or 'riscos'
- os.curdir is a string representing the current di... | zwChan/VATEC | ~/eb-virt/Lib/os.py | Python | apache-2.0 | 26,652 | [
"VisIt"
] | c8e67622df3b0e6455038a21fb0e25f1ed1071ee841fc745a54d4be2b7d88391 |
""" This helper looks in the /Operations section of the CS, considering its specific nature:
the /Operations section is designed in a way that each configuration can be specific to a Setup, while maintaining a default.
So, for example, given the following /Operations section::
Operations/
Defa... | vmendez/DIRAC | ConfigurationSystem/Client/Helpers/Operations.py | Python | gpl-3.0 | 6,272 | [
"DIRAC"
] | f6ea30143ede85534e59148171eb8c1821decb31173b524de2e3d59e5fdc9347 |
import pickle
from io import BytesIO
import numpy as np
import scipy.sparse
from sklearn.datasets import load_digits, load_iris
from sklearn.cross_validation import cross_val_score, train_test_split
from sklearn.externals.six.moves import zip
from sklearn.utils.testing import assert_almost_equal
from sklearn.utils.te... | mehdidc/scikit-learn | sklearn/tests/test_naive_bayes.py | Python | bsd-3-clause | 16,330 | [
"Gaussian"
] | 9d9c7e394b38a5852b17cdeb8672a272765da120447ecdbbe6eb7c30aba06514 |
# -----------------------------------------------------------------------------
# User configuration
# -----------------------------------------------------------------------------
dataset_destination_path = '/Users/seb/Desktop/vtk_volume_v2'
# -------------------------------------------------------------------------... | Kitware/tonic-data-generator | scripts/vtk/samples/syntax-evolution-volume_v2.py | Python | bsd-3-clause | 4,351 | [
"VTK"
] | 6e155dc389015478b1c3de2abfd650caf01e3743c7e137dd92c64d2786a6646d |
# -*- coding: utf-8 -*-
""" R specifics checks """
# Let's disable the complain about how short R is
# pylint: disable=C0103
import re
import os
import urllib
import rpm
from FedoraReview import CheckBase, RegistryBase
class Registry(RegistryBase):
''' Register all check in this file in group 'R' '''
gr... | timlau/FedoraReview | plugins/R.py | Python | gpl-2.0 | 8,530 | [
"Bioconductor"
] | d64e8ccb8275514c8f0ebb9ad14a21f5af1b23080c4020ad943123d4e79c5f97 |
# Copyright (c) 2015, Frappe Technologies Pvt. Ltd. and Contributors
# License: GNU General Public License v3. See license.txt
from __future__ import unicode_literals
import frappe
from frappe.utils import add_days, getdate, cint, cstr
from frappe import throw, _
from erpnext.utilities.transaction_base import Transa... | neilLasrado/erpnext | erpnext/maintenance/doctype/maintenance_schedule/maintenance_schedule.py | Python | gpl-3.0 | 9,352 | [
"VisIt"
] | 2c47640d9d5c5e3b68a344859c2212c2a1f885095390d72951f2693a0c4409cc |
"""
Tests for `flask_openapi.utils`.
"""
import pytest
from flask_openapi import utils
@pytest.mark.parametrize('data,key,value,expected', [
({}, 'foo', None, {}),
({}, 'foo', {}, {}),
({}, 'foo', 'bar', {'foo': 'bar'})
])
def test_add_optional(data, key, value, expected):
"""
Test if a value is... | remcohaszing/flask-openapi | flask_openapi/utils_test.py | Python | mit | 2,724 | [
"Galaxy"
] | be1d38b5b59a43478d64e2ceb31ef3f1a40d73f74141c4293536cf77fb71eb10 |
#!/usr/bin/python
# -*- coding: UTF-8 -*-
# This file is part of pyAlienFX.
#
# pyAlienFX is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any... | jrobeson/pyalienfx | install.py | Python | gpl-3.0 | 6,691 | [
"VisIt"
] | 555dfac393013a15bc5de530c8f331113d4eac8cbc8d5606a59af2f753b54a4d |
"""
:codeauthor: Jayesh Kariya <jayeshk@saltstack.com>
"""
import pytest
import salt.modules.random_org as random_org
from salt.ext.tornado.httpclient import HTTPClient
from tests.support.mixins import LoaderModuleMockMixin
from tests.support.unit import TestCase, skipIf
def check_status():
"""
Check the... | saltstack/salt | tests/unit/modules/test_random_org.py | Python | apache-2.0 | 12,483 | [
"Gaussian"
] | 10d38055fc3d90de780a9016398464d687205cd094ce004685dd252565fc24f3 |
#!/usr/bin/env python
"""A simple example demonstrating TVTK. This example is basically a
translation of the VTK tutorial demo available in
VTK/Examples/Tutorial/Step6/Python/Cone6.py.
"""
# Author: Prabhu Ramachandran <prabhu_r@users.sf.net>
# Copyright (c) 2004-2006, Enthought, Inc.
# License: BSD Style.
from tvtk... | dmsurti/mayavi | examples/tvtk/simple.py | Python | bsd-3-clause | 2,042 | [
"VTK"
] | 014d7204ff683037858739a2c1b5e23e1a2d959ab6921292996a629f25253d07 |
'''
=============================
EM for Linear-Gaussian Models
=============================
This example shows how one may use the EM algorithm to estimate model
parameters with a Kalman Filter.
The EM algorithm is a meta-algorithm for learning parameters in probabilistic
models. The algorithm works by first fixing... | PierrotLC/pykalman | examples/standard/plot_em.py | Python | bsd-3-clause | 4,699 | [
"Gaussian"
] | 4e0f90ab5ba93bdef5bf8406bf89b4088a74a44b8e9d2ab1f21bf5fd80a025ff |
r"""
This model provides the form factor, $P(q)$, for a micelle with a spherical
core and Gaussian polymer chains attached to the surface, thus may be applied
to block copolymer micelles. To work well the Gaussian chains must be much
smaller than the core, which is often not the case. Please study the
reference caref... | SasView/sasmodels | sasmodels/models/polymer_micelle.py | Python | bsd-3-clause | 5,987 | [
"Gaussian"
] | a95c720023ea8f5249fc196bd1faea38646ed6cef622d6c2b39f097edc580612 |
from ase import *
from hotbit import *
from hotbit import fixpar
import os
calc=Hotbit(SCC=True,width=0.05,txt='test.cal',parameters=fixpar)
atoms=Atoms('CO',positions=[(0,0,0),(1.13,0,0)],pbc=False)
atoms.center(vacuum=3)
atoms.set_calculator(calc)
atoms.get_potential_energy()
wf=calc.get_grid_wf(0,spacing=0.5)
wri... | pekkosk/hotbit | hotbit/doc/examples/CO_wf.py | Python | gpl-2.0 | 349 | [
"ASE"
] | 43cdf27b477e6578d36c3b9625b79b16c4b2e7736e628799f50cab8c497f9dcd |
# Copyright 2015 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | menghsuann/Tensorflow-Study-Group | partial_diff/cifar10.py | Python | gpl-3.0 | 14,534 | [
"Gaussian"
] | a3f06c128a9d599be4fb9da10866c4730f1a23b7bb436e35216226bb51fe1cfd |
# /usr/bin/python3
# coding=utf-8
# Point Of No Return
"""
The game file, contains the game and the interface to the players.
@author: anon-42
@version: beta
"""
import tkinter as tk
import numpy as np
import ann
import act_func
import trainer
class Dot:
"""
Class for tdhe points the player can visit.
... | anon-42/ANN-PONR-Python3 | PointOfNoReturn.py | Python | mit | 12,028 | [
"VisIt"
] | 8211d9fe39b238d4ff9e3e0ec005e39150186f469966a79ad6a7368561199a5f |
#-*. coding: utf-8 -*-
## Copyright (c) 2012, Adrià Cereto-Massagué, Noel O'Boyle
## All rights reserved.
##
## This file is part of Cinfony.
## The contents are covered by the terms of the BSD license
## which is included in the file LICENSE_BSD.txt.
"""
jchem - A Cinfony module for accessing ChemAxon's JChem from... | cinfony/cinfony | cinfony/jchem.py | Python | bsd-2-clause | 21,832 | [
"Gaussian"
] | 9776a61cc5949909335424856b84f416ba16fb8270960ec74ce7addc34e0ae96 |
import numpy as np
import theano
import theano.tensor as T
import unittest
import tempfile
from numpy.testing import assert_array_equal
from smartlearner import views, stopping_criteria, Trainer, tasks
from smartlearner.direction_modifiers import DecreasingLearningRate
from smartlearner.optimizers import SGD
from sma... | ASalvail/smartlearner | tests/direction_modifiers/test_decreasing_learning_rate.py | Python | bsd-3-clause | 4,346 | [
"Gaussian"
] | a632bbe68981a5b0af09e1c80d224ab3832950039f6fe7079818af8a1d8965f9 |
# -*- coding: utf-8 -*-
# pylint: disable=E1103,C0103
"""
Copyright 2013-2014 Olivier Cortès <oc@1flow.io>
This file is part of the 1flow project.
1flow is free software: you can redistribute it and/or modify
it under the terms of the GNU Affero General Public License as
published by the Free Soft... | 1flow/1flow | oneflow/core/tests/test_models.py | Python | agpl-3.0 | 42,072 | [
"Galaxy"
] | 8122f5256e763709a0a12bcfe3cfea86b6ff2effeca3bfb2630d5362ef0b9263 |
# Copyright (C) 2016
# Max Planck Institute for Polymer Research & JGU Mainz
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of th... | acfogarty/espressopp | testsuite/FileIOTests/dump_gromacs_adress/test_dump_gromacs_adress.py | Python | gpl-3.0 | 6,768 | [
"ESPResSo"
] | b802a7e8c2932d8bbf9690133f697ced8d01075967411b6e41ee447ef6122167 |
# Copyright 2008 Brian Boyer, Ryan Mark, Angela Nitzke, Joshua Pollock,
# Stuart Tiffen, Kayla Webley and the Medill School of Journalism, Northwestern
# University.
#
# This file is part of Crunchberry Pie.
#
# Crunchberry Pie is free software: you can redistribute it and/or modify
# it under the terms of the GNU Gene... | brianboyer/newsmixer | social/quips/views.py | Python | gpl-3.0 | 5,451 | [
"Brian"
] | 1ed41ce136afab82671ffc12d26fe0830ac208c7c0337b58662e9608d3db3597 |
from __future__ import annotations
from xml.etree import ElementTree as ET
import numpy as np
from .._exceptions import WriteError
from .._helpers import register_format
def write(
filename,
mesh,
float_fmt: str = ".3f",
stroke_width: str | None = None,
# Use a default image_width (not None). I... | nschloe/meshio | src/meshio/svg/_svg.py | Python | mit | 3,363 | [
"ParaView"
] | 54ee540090d2fcc88eaf4b8d40127eb6aaee9a642e1f32439d61978f8eeaa982 |
# Copyright (c) 2012 OpenStack Foundation.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to... | alexandrucoman/vbox-neutron-agent | neutron/tests/unit/test_policy.py | Python | apache-2.0 | 28,958 | [
"BLAST"
] | 812fb7a3556be763b5da236e5d051087eb78853232f11358f9bb09a7e12268fb |
"""
Utility functions to mimic the template support functions for vtkVariant
"""
import vtk
_variant_type_map = {
'void' : vtk.VTK_VOID,
'char' : vtk.VTK_CHAR,
'unsigned char' : vtk.VTK_UNSIGNED_CHAR,
'signed char' : vtk.VTK_SIGNED_CHAR,
'short' : vtk.VTK_SHORT,
'unsigned short' : ... | timkrentz/SunTracker | IMU/VTK-6.2.0/Wrapping/Python/vtk/util/vtkVariant.py | Python | mit | 6,022 | [
"VTK"
] | d220b9d728b792a734e1153aee5d755a4caa79c779b7a5a96fadc2c81da9635c |
import threading
import time
import sys
import hashlib
import requests
unuseful_codes = [404]
strict_codes = [100, 200, 300, 301, 302, 401, 403, 405, 500]
class Visitor(threading.Thread):
auth = None
banned_location = None
banned_md5 = None
cookies = None
delay = None
discriminator = None
... | deibit/cansina | core/visitor.py | Python | gpl-3.0 | 7,285 | [
"VisIt"
] | b14ed097cd38b1bd9e25efa8791337dfa04840b15ff8d1c22bb8035b8ea89caf |
# -*- coding: utf-8 -*-
import ast
import base64
import csv
import functools
import glob
import itertools
import jinja2
import logging
import operator
import datetime
import hashlib
import os
import re
import simplejson
import sys
import time
import urllib2
import zlib
from xml.etree import ElementTree
from cStringIO ... | dkodnik/arp | addons/web/controllers/main.py | Python | agpl-3.0 | 69,202 | [
"VisIt"
] | 4669968e882b1204aca877bebbb82e44d034580ef434c3b0ec06cf787494517d |
# Copyright (C) 2013 by Ben Morris (ben@bendmorris.com)
# based on code by Eric Talevich (eric.talevich@gmail.com)
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
"""Classes corresponding to CDAO tree... | zjuchenyuan/BioWeb | Lib/Bio/Phylo/CDAO.py | Python | mit | 1,443 | [
"Biopython"
] | 8463c8288bdd3c2360461a6951b5acc8b9daea75a25175ae204d1f0d2afa080d |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
This module provides plotting capabilities for battery related applications.
"""
__author__ = "Shyue Ping Ong"
__copyright__ = "Copyright 2012, The Materials Project"
__version__ = "0.1"
__maintainer__ =... | dongsenfo/pymatgen | pymatgen/apps/battery/plotter.py | Python | mit | 3,385 | [
"pymatgen"
] | 1ce1aa60b9991d7ac99fcb533282e96d105d7b2395b3483ec4fbbe003affcd92 |
# Copyright 2016-2017 Capital One Services, LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed ... | ewbankkit/cloud-custodian | tests/test_resolver.py | Python | apache-2.0 | 6,165 | [
"Galaxy",
"MOOSE"
] | 370085f1a61bbebe38d4f99497215c30e883f24953f7ef3a90efdaa2ecad2a94 |
# standard modules
import os
import re
# custom modules
import Reader
class Parser(object):
def __init__(self):
self._readers = dict()
self.path = None
self.runmatch = dict()
self._runcache = None
def get_atom_indices(self, selector):
"""
:param selector: Valid selection string.
:return: List of 0-b... | ferchault/iago | src/iago/Parser.py | Python | mit | 3,093 | [
"CP2K",
"NAMD"
] | 4e15c861e6bfcfeaea60a93e22477786b866ccd2d6a224bc62da3a5fb1222b56 |
# -*- coding: utf-8 -*-
from __future__ import unicode_literals
from django.db import models, migrations
class Migration(migrations.Migration):
dependencies = [
('visit', '0083_auto_20150828_2346'),
]
operations = [
migrations.AlterModelOptions(
name='involvementtype',
... | koebbe/homeworks | visit/migrations/0084_auto_20150829_2034.py | Python | mit | 954 | [
"VisIt"
] | 5e3f1df1b6e52d277d6ef26f899b2b9a1ec923a405d39871826dbbe79bdf8b01 |
# emacs: -*- mode: python; py-indent-offset: 4; indent-tabs-mode: nil -*-
# vi: set ft=python sts=4 ts=4 sw=4 et:
"""Interfaces to assorted Freesurfer utility programs.
Change directory to provide relative paths for doctests
>>> import os
>>> filepath = os.path.dirname( os.path.realpath( __file__ ) )
>>> d... | mick-d/nipype_source | nipype/interfaces/freesurfer/utils.py | Python | bsd-3-clause | 49,356 | [
"Gaussian",
"VTK"
] | 54fdd4fb003cc8369075b35c4f4d6520e0d2fd633b681b46497f51cd523ebe09 |
# Mantid Repository : https://github.com/mantidproject/mantid
#
# Copyright © 2018 ISIS Rutherford Appleton Laboratory UKRI,
# NScD Oak Ridge National Laboratory, European Spallation Source
# & Institut Laue - Langevin
# SPDX - License - Identifier: GPL - 3.0 +
# ICConvoluted.py
#
# Defines the IPeakFuncti... | mganeva/mantid | Framework/PythonInterface/plugins/functions/ICConvoluted.py | Python | gpl-3.0 | 5,350 | [
"Gaussian"
] | fdbab072a9adede867d189fe4a01e6dcfbb556b93d7aab197ee0d6579a409be7 |
#!/usr/bin/env python
from __future__ import with_statement
import threading, time, sys, os
import Queue
import motmot.utils.config
import traceback
import warnings
import socket
import pkg_resources # from setuptools
import wx
import motmot.wxvalidatedtext.wxvalidatedtext as wxvt
from optparse import OptionParser
im... | motmot/fview | motmot/fview/fview.py | Python | bsd-3-clause | 81,270 | [
"Firefly"
] | 536f28aeaefbc2dc55ecc2fa3de8e74780f021946fb0d6324c0b14ef0480aca6 |
from .album import AlbumGenerator, Album
from .band import BandGenerator, Band
"""
<li><a href="http://www.fantasynamegenerators.com/afterlife-names.php">Afterlife Names</a></li>
<li><a href="http://www.fantasynamegenerators.com/alliance-names.php">Alliance Names</a></li>
<li><a href="htt... | d2emon/generator-pack | src/genesys/generator/fng/name/other/__init__.py | Python | gpl-3.0 | 19,197 | [
"Galaxy"
] | a863fc6bae069cd60dd18b53895d13632349ef1cee9f09a01f5d006d90bb029a |
# Twisted Imports
from twisted.internet import reactor, defer, task
from twisted.python import log
from twisted.logger import Logger
# Octopus Imports
from octopus.sequence.util import Runnable, Pausable, Cancellable, BaseStep
from octopus.sequence.error import NotRunning, AlreadyRunning, NotPaused
from octopus.consta... | richardingham/octopus | octopus/blocktopus/workspace.py | Python | mit | 37,321 | [
"Octopus"
] | 84041f8c004d410018c6985417f5c5001fce34de307dd93d366003d72744a866 |
"""
merged implementation of the cache provider
the name cache was not chosen to ensure pluggy automatically
ignores the external pytest-cache
"""
import py
import pytest
import json
from os.path import sep as _sep, altsep as _altsep
class Cache(object):
def __init__(self, config):
self.config = config
... | tgoodlet/pytest | _pytest/cacheprovider.py | Python | mit | 8,938 | [
"VisIt"
] | b0504b7bd28d91e4629d35ecc492a768dba474d8314b9850a3611a8724259bdc |
import numpy as np
from ase import Atom, Atoms
from gpaw import GPAW, Mixer
from gpaw.eigensolvers import RMM_DIIS
from gpaw.test import equal
a = 4.0
n = 20
d = 1.0
x = d / 3**0.5
atoms = Atoms([Atom('C', (0.0, 0.0, 0.0)),
Atom('H', (x, x, x)),
Atom('H', (-x, -x, x)),
Atom... | qsnake/gpaw | gpaw/test/blocked_rmm_diis.py | Python | gpl-3.0 | 893 | [
"ASE",
"GPAW"
] | 709602fa6be698d4954572391d0cd213c7a7e3cf7cbafc879fccbcef201a83e0 |
# -*- coding: utf-8 -*-
# ------------------------------------------------------------------------------
# Copyright (c) 2015 Eric Pascual
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software w... | ensonic/ev3dev-lang-python-1 | ev3dev/brickpi.py | Python | mit | 2,738 | [
"Amber"
] | c802d3c17867e180f85fcf69259ee175b03dc98b385ecf87c84b6546126358fe |
"""
Copyright (C) 2007-2010 Martin Laprise (mlaprise@gmail.com)
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; version 2 dated June, 1991.
This software is distributed in the hope that it will be ... | mlaprise/PyOFTK | PyOFTK/amplifier.py | Python | gpl-2.0 | 18,207 | [
"ASE"
] | 452350b10b98cd499878422443b947c1b6c46a3acf23540d289aaeadbfff9748 |
#!/usr/bin/env python
# ----------------------------------------------------------------------------
# Copyright 2015 Nervana Systems Inc.
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# ... | dongjoon-hyun/neon | examples/convnet-benchmarks/vgg_a.py | Python | apache-2.0 | 3,040 | [
"Gaussian"
] | f0637605b8234d29b393431ee49a120b8a838a5c8568999fc099c294a6e74128 |
from collections import OrderedDict
from .. import Provider as PersonProvider
class Provider(PersonProvider):
formats_female = OrderedDict(
(
("{{first_name_female}} {{last_name}}", 0.97),
("{{prefix_female}} {{first_name_female}} {{last_name}}", 0.015),
("{{first_name... | joke2k/faker | faker/providers/person/en_US/__init__.py | Python | mit | 66,194 | [
"Amber",
"Brian",
"CRYSTAL",
"Dalton"
] | 6f8e0ea280dd8875f06c804c1855c7da01df8db04d51f16be1877aa11c3bfe58 |
## @example surface_extraction_gui_with_pyside2.py
# This example demonstrates how to use FAST together with Qt Python GUI with PySide2.
# The GUI application performs Gaussian smoothing and marching cubes surface extraction on a CT thorax volume.
#
# @m_class{m-block m-warning} @par PySide2 Qt Version
# @parblock
# ... | smistad/FAST | source/FAST/Examples/Python/surface_extraction_gui_with_pyside2.py | Python | bsd-2-clause | 2,553 | [
"Gaussian"
] | 781c459231a304177c3cba4b42b750dd4515a72c90e95d561f0b396a0619b40d |
# -*- coding: utf-8 -*-
#
# Copyright (C) 2014 Red Hat, Inc.
#
# This copyrighted material is made available to anyone wishing to use,
# modify, copy, or redistribute it subject to the terms and conditions of
# the GNU General Public License v.2, or (at your option) any later version.
# This program is distributed in ... | maxamillion/anaconda | tests/pyanaconda_tests/dataholder_test.py | Python | gpl-2.0 | 1,964 | [
"Brian"
] | 650adb753fbbedf8ebc7b678a25bd2c1cd092957899489e6a30fd7da34f83fc0 |
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