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#! /usr/bin/env python
###########
## REMAP ##
###########
##
## first operational version: Matthias Aechner -- 2014
## rewrite + generalization + options + optimization: Aymeric SPIGA -- March 2015
##
import netCDF4 as nc
import ctypes as ct
import numpy as np
import os
import time
from optparse import OptionParser #... | aymeric-spiga/remap | py/remap.py | Python | gpl-2.0 | 17,599 | [
"NetCDF"
] | 72d54f5d7a3638e057e836ae6e14c8b47e921abb38118cdb8e66fac41a334d99 |
##############################################################################
# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-64... | EmreAtes/spack | var/spack/repos/builtin/packages/ior/package.py | Python | lgpl-2.1 | 2,584 | [
"NetCDF"
] | 21e6b771af6e3fd83757f8066b2dd16073b320a05cc12a1818fc6d121f896d18 |
'''
Created on 28/09/2012
@author: Amr Hassan
'''
import os
import sys
import struct
import string
import math
import numpy
from random import randrange
import logging
import PGDBInterface
import h5py
import numpy
import time
import ProcessTreeTraversal
class SAGEDataReader:
#The Module handles the data readi... | IntersectAustralia/asvo-tao | core/sageimport_mpi_HDF/SAGEReader.py | Python | gpl-3.0 | 12,776 | [
"Galaxy"
] | fa48f024a1f18a29da72737d67bf4f0cb0daafffedd126cca9219a14ecb5202e |
#!/usr/bin/env python
# Author: Samuel Ponc\'e
# Date: 30/04/2013 -- 11/09/2014
# Version: 1.3
# Script to compute the ZPR
import sys
import os
import copy
try:
from rf_mods_seq import system
except ImportError:
import warnings
warnings.warn("The system module is missing!")
raise
from rf_mods_seq import zpm
im... | jmbeuken/abinit | scripts/deprecated/temperature_seq.py | Python | gpl-3.0 | 22,982 | [
"ABINIT"
] | d97ee4e8c22064e830f689b33991ee448e5fd4621b9248ab97a5aeb92ebe919a |
# coding=utf-8
# Copyright 2020 The Google Research Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by... | google-research/proteinfer | colab_evaluation_test.py | Python | apache-2.0 | 8,978 | [
"BLAST"
] | 8615f12979c2bc1ef9ca7b999b2f065477846825d55b4197884674e1739fa4ad |
"""This demo program uses the interface to SNES solver for variational
inequalities to solve a contact mechanics problems in FEniCS. The
example considers a heavy hyperelastic circle in a box of the same
size"""
# Copyright (C) 2012 Corrado Maurini
#
# This file is part of DOLFIN.
#
# DOLFIN is free software: you ... | FEniCS/dolfin | demo/undocumented/contact-vi-snes/python/demo_contact-vi-snes.py | Python | lgpl-3.0 | 3,873 | [
"VTK"
] | 06952a6467cbb39d47ef3cc135f7885bda5bf4fb302adac1c7f9c2826cdf54dd |
# -*- coding: utf-8 -*-
# HORTON: Helpful Open-source Research TOol for N-fermion systems.
# Copyright (C) 2011-2017 The HORTON Development Team
#
# This file is part of HORTON.
#
# HORTON is free software; you can redistribute it and/or
# modify it under the terms of the GNU General Public License
# as published by th... | QuantumElephant/horton | horton/io/cp2k.py | Python | gpl-3.0 | 14,590 | [
"CP2K",
"Gaussian"
] | 22e7029df253a675436b240d6c361ddb0543fb806deaf70e10e16c3e7289e595 |
import numpy as np
from skimage.restoration._nl_means_denoising import _nl_means_denoising_2d, \
_nl_means_denoising_3d, \
_fast_nl_means_denoising_2d, _fast_nl_means_denoising_3d
def nl_means_denoising(image, patch_size=7, patch_distance=11, h=0.1,
multic... | Britefury/scikit-image | skimage/restoration/non_local_means.py | Python | bsd-3-clause | 5,145 | [
"Gaussian"
] | 3d62803bb5787464b4e47330d65b08c9af5551700a513ee47fdfa0fe030417f2 |
def myargs(parser):
parser.add_argument("-n", "--numcores", type=int,
default=1, help="Number of concurrent jobs to process.")
parser.add_argument("-c", "--cores-per-job", type=int,
default=1, help="Number of cores to use.")
parser.add_argument("-m", "--memo... | lpantano/ich-wrapper | ichwrapper/arguments.py | Python | mit | 1,578 | [
"Galaxy"
] | b078d9f607a7e01630e3ec22013e03ac918b79a660a250bee219a7401373270e |
import numpy as np
from gpaw.xc.kernel import XCKernel
class LB94(XCKernel):
"""Correction to LDA to resemble asymptotic -1/r potential.
See:
van Leeuwen and Baerends, Phys.Rev.A vol 49 (1994) 2421
"""
def __init__(self, beta=0.05):
XCKernel.__init__(self, 'LDA')
self.name =... | qsnake/gpaw | gpaw/xc/lb94.py | Python | gpl-3.0 | 995 | [
"GPAW"
] | 3838ab948c3d010bf1f3110a76dc4125e65095e24e8a6abd1c1de3a418988c6a |
#* This file is part of the MOOSE framework
#* https://www.mooseframework.org
#*
#* All rights reserved, see COPYRIGHT for full restrictions
#* https://github.com/idaholab/moose/blob/master/COPYRIGHT
#*
#* Licensed under LGPL 2.1, please see LICENSE for details
#* https://www.gnu.org/licenses/lgpl-2.1.html
"""
An Exten... | harterj/moose | python/MooseDocs/base/Extension.py | Python | lgpl-2.1 | 6,018 | [
"MOOSE"
] | 332442a0634e7270fd9bb929b4874b343d8ff6986e2a0868bb1ffa4f0485b941 |
"""Polynomial factorization routines in characteristic zero. """
from sympy.polys.galoistools import (
gf_from_int_poly, gf_to_int_poly,
gf_degree, gf_from_dict,
gf_lshift, gf_add_mul, gf_mul,
gf_div, gf_rem,
gf_gcd, gf_gcdex,
gf_sqf_p,
gf_factor_sqf, gf_factor)
from sympy.polys.densebasic... | Cuuuurzel/KiPyCalc | sympy_old/polys/factortools.py | Python | mit | 33,114 | [
"Gaussian"
] | b4439862f1cec6e88d6447d4385133cb86b6e1c52e2aba14aa98d8d5ff01f995 |
"""PEP484 compatibility code."""
import re
from pytype.pytd.parse import visitors
class Print484StubVisitor(visitors.Visitor):
"""Visitor for converting ASTs to the PEP 484 format.
This generates a PEP484 "stub" format that contains function signatures, but
no code. For example:
class MyList(GenericType[... | pombredanne/pytype | pytype/pytd/pep484.py | Python | apache-2.0 | 4,900 | [
"VisIt"
] | 0862e97b4982c9335f1bc3bdd8f99f8d0be9d13025970cec6a24ff4641abf936 |
#!/usr/bin/python3
import os
os.environ['TF_CPP_MIN_LOG_LEVEL'] = '3'
import HR_data
import time
import HR_vocabulary
import tensorflow as tf
import numpy as np
import random
from datetime import datetime
from Logger import Logger
tf.flags.DEFINE_integer("BATCH_SIZE", 50, "Training batch size")
tf.flags.DEFINE_integ... | bornabesic/cnn-text-classification | HR/HR_train_and_test.py | Python | mit | 4,986 | [
"NEURON"
] | 19f888c0e85e9691e75c1c6e6f076d95d280aec8f241744ffe5cca1db17ceb4c |
"""
=======
Plotter
=======
.. moduleauthor:: Adam Ginsburg <adam.g.ginsburg@gmail.com>
"""
from __future__ import print_function
import matplotlib
import matplotlib.figure
import numpy as np
import astropy.units as u
import copy
import inspect
from astropy import log
# this mess is to handle a nested hell of differe... | keflavich/pyspeckit | pyspeckit/spectrum/plotters.py | Python | mit | 35,854 | [
"Gaussian"
] | d038af81f73fb2e14a7c8dd82df6b4d401c0fd10d63fa59ea53d9c0d301766f5 |
from django.utils.translation import ugettext_lazy as _
from crystal_dashboard.dashboards.crystal import dashboard
import horizon
class WorkloadMetrics(horizon.Panel):
name = _("Workload Metrics")
slug = "metrics"
dashboard.CrystalController.register(WorkloadMetrics)
| Crystal-SDS/dashboard | crystal_dashboard/dashboards/crystal/metrics/panel.py | Python | gpl-3.0 | 280 | [
"CRYSTAL"
] | 5039f9be96a81a39c292b263bd936e74ac9c93764cce7b6edd403b1aff736d29 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
<<<<<<< HEAD
# Distributed under the terms of the MIT License.
=======
# Distributed under the terms of the MIT License.
>>>>>>> a41cc069c865a5d0f35d0731f92c547467395b1b
| Bismarrck/pymatgen | pymatgen/optimization/__init__.py | Python | mit | 229 | [
"pymatgen"
] | e12729bdf6c1328ff7c07aa686bc9220f198fde44e878beb4b52e09a7d9e02c4 |
import numpy as np
from sklearn.utils.testing import (assert_allclose, assert_raises,
assert_equal)
from sklearn.neighbors import KernelDensity, KDTree, NearestNeighbors
from sklearn.neighbors.ball_tree import kernel_norm
from sklearn.pipeline import make_pipeline
from sklearn.dataset... | krez13/scikit-learn | sklearn/neighbors/tests/test_kde.py | Python | bsd-3-clause | 5,560 | [
"Gaussian"
] | 56115d4dc435645b11d5390f975639ffd1bd97d18c0df9dce1b30f3d69ea6e74 |
# Copyright 2016 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | kobejean/tensorflow | tensorflow/python/ops/linalg/linear_operator_test_util.py | Python | apache-2.0 | 28,127 | [
"Gaussian"
] | 685e87a645a4c2c83225c3d1ca80e1c1529ca0022930587bd843032677790573 |
# -*- coding: utf-8 -*-
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2003-2005 Donald N. Allingham
# Copyright (C) 2008 Brian G. Matherly
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Fr... | arunkgupta/gramps | gramps/plugins/rel/rel_nl.py | Python | gpl-2.0 | 23,343 | [
"Brian"
] | 18d3355b28628f048cd8cf2e7809b3adb525243d08f09d4ef8e3f66180c63b8f |
# -*- Mode: python; tab-width: 4; indent-tabs-mode:nil; coding:utf-8 -*-
# vim: tabstop=4 expandtab shiftwidth=4 softtabstop=4 fileencoding=utf-8
#
# MDAnalysis --- http://www.mdanalysis.org
# Copyright (c) 2006-2016 The MDAnalysis Development Team and contributors
# (see the file AUTHORS for the full list of names)
#
... | alejob/mdanalysis | testsuite/MDAnalysisTests/test_altloc.py | Python | gpl-2.0 | 2,503 | [
"MDAnalysis"
] | fbec9048559d9f526d1a476196edf7779e8791cfcef1f17ae83f1791ca9ed2f7 |
# $Id: docutils_xml.py 7497 2012-08-16 15:17:29Z milde $
# Author: David Goodger, Paul Tremblay, Guenter Milde
# Maintainer: docutils-develop@lists.sourceforge.net
# Copyright: This module has been placed in the public domain.
"""
Simple document tree Writer, writes Docutils XML according to
http://docutils.sourceforg... | asedunov/intellij-community | python/helpers/py3only/docutils/writers/docutils_xml.py | Python | apache-2.0 | 6,973 | [
"VisIt"
] | 5f86c7b7f5bf72b775beefed6e2d6ba5c342488dea25ec820be6e02c52e12070 |
# Copyright 2018 The Lucid Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable l... | tensorflow/lucid | lucid/optvis/objectives.py | Python | apache-2.0 | 14,268 | [
"NEURON"
] | da721265a57f529d33017f2574a915d5c2f1c0dfef2d90148c715f3c357b8a31 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
# :::~ Author: Claudio Juan Tessone <claudio.tessone@uzh.ch> (c) 2010
###
###
###
###
# Distributed According to GNU Generic Purpose License (GPL) version 3
# Please visit www.gnu.org
###############################################################################
PROGRAM_NAM... | tessonec/PySPG | scripts/vault/spg-param-split.py | Python | gpl-3.0 | 5,135 | [
"VisIt"
] | c145d37285f32c8fa61edbce2314058384e29dc7430686de826f6175ded8ef6b |
#!/usr/bin/env python
# ******************************************************************************
# Copyright 2014-2018 Intel Corporation
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
... | NervanaSystems/neon | examples/convnet-benchmarks/overfeat.py | Python | apache-2.0 | 2,740 | [
"Gaussian"
] | 41ece6460d98a8f7afa1ead117c7cc180aee45d8e5fa7d66cca7d33c7fe017d4 |
# Licensed under a 3-clause BSD style license - see LICENSE.rst
# -*- coding: utf-8 -*-
"""
desitarget.gaiamatch
====================
Useful Gaia matching and manipulation routines.
.. _`Gaia Collaboration/Babusiaux et al. (2018)`: https://ui.adsabs.harvard.edu/abs/2018A%26A...616A..10G/abstract
.. _`borrowed shamele... | desihub/desitarget | py/desitarget/gaiamatch.py | Python | bsd-3-clause | 57,119 | [
"Galaxy"
] | e0531f594f00e2b5ac73c5ff3f059ea907e32f578d28e273aa231385d38112db |
#!/usr/bin/env python
import sys
import argparse
import numpy as np
import netCDF4 as nc
import matplotlib.pyplot as plt
from matplotlib import animation
"""
This script makes a fluid animation using NetCDF data.
"""
def main ():
# Setup arguments.
parser = argparse.ArgumentParser()
parser.add_argument('input_... | LAMBDA-HYPERON/fluids-movie | make_movie.py | Python | apache-2.0 | 1,245 | [
"NetCDF"
] | 84ecd28f6a587405e62e5d472b08b9984214dd97865428a592ae035780d849c7 |
import tensorflow as tf
import tensorflow_addons as tfa
import numpy as np
import scipy.signal
import cv2 as cv
def derivative_of_Gaussian_win( N, sigma=1.0 ):
assert N%2==1
x = np.expand_dims( np.array( scipy.signal.windows.gaussian(N, sigma ) ), axis=0 ).astype(np.double)
x = x.T @ x
dx = np.gradie... | fbergama/wass | gridding/TFVariationalRefinement.py | Python | gpl-3.0 | 5,232 | [
"Gaussian"
] | 070050bd3c08bf49f8a32b67107ed348125a1c7b0918fb4537569a90a9e4c16f |
"""
# Notes:
- This simulation seeks to emulate the CUBA benchmark simulations of (Brette
et al. 2007) using the Brian2 simulator for speed benchmark comparison to
DynaSim. However, this simulation does NOT include synapses, for better
comparison to Figure 5 of (Goodman and Brette, 2008).
- The time taken to si... | asoplata/dynasim-benchmark-brette-2007 | Brian2/brian2_benchmark_CUBA_nosyn_compiled_500.py | Python | gpl-3.0 | 2,137 | [
"Brian"
] | d7b89052599cbabca2566f773ee8b007f850a5cfeefe4258defe604e17fe4dda |
########################################################################
# File : InstallTools.py
# Author : Ricardo Graciani
########################################################################
"""
Collection of Tools for installation of DIRAC components:
MySQL, DB's, Services's, Agents
It only makes use of ... | vmendez/DIRAC | Core/Utilities/InstallTools.py | Python | gpl-3.0 | 97,592 | [
"DIRAC"
] | 0006e62952783f8f2d5851554feefb0b0ad0850e778aab1f7b4e00ced141b020 |
# -*- coding: utf-8 -*-
"""
jinja2.compiler
~~~~~~~~~~~~~~~
Compiles nodes into python code.
:copyright: (c) 2009 by the Jinja Team.
:license: BSD.
"""
from cStringIO import StringIO
from itertools import chain
from copy import deepcopy
from jinja2 import nodes
from jinja2.visitor import NodeVisit... | yesudeep/tisshrmlr | app/jinja2/jinja2/compiler.py | Python | mit | 57,185 | [
"VisIt"
] | 1290584dc50192b9a2b7767fdf1a613f3c9cd00a5671b2a258a80de1bf7e8a44 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
from __future__ import division, print_function, unicode_literals, \
absolute_import
from scipy.linalg import polar
import numpy as np
import itertools
import warnings
import collections
from pymatgen.symm... | tallakahath/pymatgen | pymatgen/analysis/elasticity/tensors.py | Python | mit | 19,491 | [
"CRYSTAL",
"pymatgen"
] | 91380a1179dafd8f75102c3c98bf126036fb5b2f47b6bcd02f93020ae1e40ce9 |
# Copyright (C) 2019 The ESPResSo project
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later versio... | psci2195/espresso-ffans | testsuite/scripts/samples/test_visualization_mmm2d.py | Python | gpl-3.0 | 1,258 | [
"ESPResSo"
] | c70fdc911d9b0113a16f9c0c03fe37a075ad7b2c090b39088c6022c08490d467 |
#!/usr/bin/env python
import os.path
from zipfile import ZipFile
from django.conf import settings
from django.test import TransactionTestCase
from panda.models import TaskStatus
from panda.tasks import ExportSearchTask
from panda.tests import utils
class TestExportSearch(TransactionTestCase):
fixtures = ['init_... | NUKnightLab/panda | panda/tests/test_export_search.py | Python | mit | 3,391 | [
"Brian"
] | e3411283128c3746cb20805dee7cab1e10efbcafdeba06e3f6b6de1cfce031a0 |
# Copyright (C) 2012,2013
# Max Planck Institute for Polymer Research
# Copyright (C) 2008,2009,2010,2011
# Max-Planck-Institute for Polymer Research & Fraunhofer SCAI
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the terms of t... | capoe/espressopp.soap | src/standard_system/LennardJones.py | Python | gpl-3.0 | 5,615 | [
"ESPResSo"
] | 1f03be7a56999ad0647e745d0b9d087fee4dacf8efcf380a4eca4e3239e1383b |
# $Id$
#
# Copyright (C) 2004-2006 Rational Discovery LLC
#
# @@ All Rights Reserved @@
# This file is part of the RDKit.
# The contents are covered by the terms of the BSD license
# which is included in the file license.txt, found at the root
# of the RDKit source tree.
#
from __future__ import print_function
f... | rvianello/rdkit | rdkit/Chem/AtomPairs/Utils.py | Python | bsd-3-clause | 7,283 | [
"RDKit"
] | e9b2d646742275c4551612db2a994f692f2c7bd9b5f55b5c557bd593dd4216ee |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
import collections
import abc
import numpy as np
from pymatgen.core.spectrum import Spectrum
from pymatgen.util.plotting import add_fig_kwargs
"""
This module implements core classes for calculation of diff... | montoyjh/pymatgen | pymatgen/analysis/diffraction/core.py | Python | mit | 7,574 | [
"CRYSTAL",
"pymatgen"
] | 1482a1f237fa5a1e83642ac14ea6e97cb3f5300e4e7d466bdb289e231ca37bda |
# -*- Mode: python; tab-width: 4; indent-tabs-mode:nil; coding:utf-8 -*-
# vim: tabstop=4 expandtab shiftwidth=4 softtabstop=4 fileencoding=utf-8
#
# MDAnalysis --- http://www.mdanalysis.org
# Copyright (c) 2006-2016 The MDAnalysis Development Team and contributors
# (see the file AUTHORS for the full list of names)
#
... | kain88-de/mdanalysis | testsuite/MDAnalysisTests/test_failure.py | Python | gpl-2.0 | 1,352 | [
"MDAnalysis"
] | d12c782529e5dbc501776165c48f078ab1714975d68cd030ece88ac05b3a2c41 |
#!/usr/bin/env python
__author__ = 'Brian Jimenez <brian.jimenez@bsc.es>'
from Bio import Entrez
import xml.etree.ElementTree as ET
import sys
# Needed in order to let Pubmed to notify you instead of blocking your IP
crawler_contact = 'your_email@here'
def search(query):
"""Searches the query in Entrez"""
... | brianjimenez/pub_crawler | papers_crawler.py | Python | gpl-2.0 | 4,934 | [
"Brian"
] | 006273a792150f1377eb2e2111f89a2db8aba4b129216cf895f9022a9f9cbf53 |
# Copyright 2014 Google Inc. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or ag... | KaranToor/MA450 | google-cloud-sdk/lib/surface/docker.py | Python | apache-2.0 | 5,178 | [
"VisIt"
] | b17e45c0479e83a278d39839fbffd09e92e052eb35fbb831b3a9ec9894335f7e |
import sys
import os.path
#sys.path.insert(0, '/home/andy/theano/tool_examples/theano-lstm-0.0.15')
from theano_lstm import Embedding, LSTM, RNN, StackedCells, Layer, create_optimization_updates, masked_loss
from utilities import *
import dill
import argparse
#import cPickle
import pickle
import numpy
from collections... | darongliu/Lstm_Turing_LM | lstm-neural-turing-machines-lm/analysis/v1-one-weight/lm_v4.py | Python | mit | 24,931 | [
"NEURON"
] | 0da1cdb81ca80d903c129278409e9ed254fe8b216c912da66285f7543edbc535 |
# rc19.py ---
#
# Filename: rc19.py
# Description:
# Author: Subhasis Ray
# Maintainer:
# Created: Sat May 24 14:10:22 2014 (+0530)
# Version:
# Last-Updated:
# By:
# Update #: 0
# URL:
# Keywords:
# Compatibility:
#
#
# Commentary:
#
#
#
#
# Change log:
#
#
#
#
# This program is fr... | dilawar/moose-full | moose-core/tests/python/mus/rc19.py | Python | gpl-2.0 | 9,829 | [
"MOOSE",
"NEURON"
] | 6fc5de66b9a833c1c056908ed9b6c74b6d5bd321d91bba43c5e8cc541726f2d1 |
import wx
import wx.html
import os
import sys
import webbrowser
import warnings
import wx.lib.agw.persist as PM
if getattr(sys, 'frozen', False):
sys.path.insert(0, os.path.dirname(os.path.dirname(os.path.dirname(os.path.dirname(os.path.abspath(sys.argv[0]))))))
elif __file__:
sys.path.insert(0, os.path.dirnam... | fukatani/Pyverilog_toolbox | pyverilog_toolbox/gui/gui_main.py | Python | apache-2.0 | 14,752 | [
"VisIt"
] | 266a48885d9f83e8cf3b0805f91be0fc16fd0881f8d397753082ca79d882be05 |
import json
import os
import re
import time
import ast
from . import python_minifier
class Visitor(ast.NodeVisitor):
"""Used to list all the modules imported by a script."""
def __init__(self, lib_path, package):
self.imports = set()
self.lib_path = lib_path
self.package = package
... | kikocorreoso/brython | setup/brython/make_package.py | Python | bsd-3-clause | 4,055 | [
"VisIt"
] | 8d9d49cd44fc18d10ba2c401ee0041f65bfde84a05ec4d62c13fac5e5f10c685 |
"""
Views for the verification flow
"""
import datetime
import decimal
import json
import logging
import urllib
import analytics
from django.conf import settings
from django.contrib.auth.decorators import login_required
from django.contrib.staticfiles.storage import staticfiles_storage
from django.core.mail import se... | ahmedaljazzar/edx-platform | lms/djangoapps/verify_student/views.py | Python | agpl-3.0 | 50,989 | [
"VisIt"
] | d9c58541cdbc7071508b648ae9b85e74272566c2470b28b05623d170936d9ec9 |
from setuptools import setup, find_packages
setup(name='latimes-mappingla-geopy',
version='0.93-latimes',
description='Python Geocoding Toolbox',
author='Ben Welsh from original work by Brian Beck',
author_email='Benjamin.Welsh@latimes.com',
url='http://github.com/datadesk/latimes-mapping... | datadesk/latimes-mappingla-geopy | setup.py | Python | mit | 1,045 | [
"Brian"
] | 119ca86c7627f01ff31d11837322da9711fc41045aa161efa11d62d81493e9c3 |
# -*- coding: utf-8 -*-
#
# test documentation build configuration file, created by
# sphinx-quickstart on Fri Feb 7 11:33:27 2014.
#
# This file is execfile()d with the current directory set to its
# containing dir.
#
# Note that not all possible configuration values are present in this
# autogenerated file.
#
# All ... | CGATOxford/CGATPipelines | CGATPipelines/pipeline_template_data/conf.py | Python | mit | 13,166 | [
"pysam"
] | 3660419f318a47d77cae7765365826aaf2dd97a961c95bfe245cfb153fb63a6e |
# imports
import pandas as pd # import pandas for easy data manipulation using data frames
import numpy as np # import numpy for numeric calculations on matrices
import time # for timers
import os
# import h2o to check calculations
import h2o
from h2o.estimators.glm import H2OGeneralizedLinearEstimator # impo... | kcrandall/Kaggle_Mercedes_Manufacturing | h2o/main.py | Python | mit | 5,401 | [
"Gaussian"
] | 05cb7c8399c3ad0b986dd1570b70102c8e49d82117c41e4f55289db2f0cf0e8f |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
This module provides
"""
from __future__ import unicode_literals, division, print_function
from collections import namedtuple, OrderedDict
from monty.string import is_string
from monty.json import MSONable ... | xhqu1981/pymatgen | pymatgen/core/xcfunc.py | Python | mit | 10,353 | [
"ABINIT",
"GPAW",
"pymatgen"
] | 77ee86c2806850f5ea68927905130300bd0933e553c173ba57952eb74a209cfb |
"""Definitions of Celery tasks in Askbot
in this module there are two types of functions:
* those wrapped with a @task decorator and a ``_celery_task`` suffix - celery tasks
* those with the same base name, but without the decorator and the name suffix
the actual work units run by the task
Celery tasks are special ... | coffenbacher/askbot-devel | askbot/tasks.py | Python | gpl-3.0 | 10,807 | [
"VisIt"
] | f7614d5c3850a770b5115f0789b8e845934dd19f3f0fcd873f9dbec210f9e144 |
#
# The BAO likelihoods.
#
from TabulatedBAOLikelihood import *
from TabulatedBAODVLikelihood import *
from GaussBAODVLikelihood import *
from LCDMCosmology import *
from scipy import *
class DR11LOWZ(GaussBAODVLikelihood):
def __init__(self):
obh2 = 0.0224
Om = 0.274
h = 0.7
mnu ... | slosar/april | py/BAOLikelihoods.py | Python | gpl-2.0 | 3,883 | [
"Galaxy"
] | b327cccfc1e920370b2883f3c6c711f4cfdc54b114e0363e1ea2750712fc211e |
import os
import sys
import re
import requests
import urllib
import json
from requests.packages.urllib3.exceptions import InsecureRequestWarning
requests.packages.urllib3.disable_warnings(InsecureRequestWarning)
Debug = False #shared across functions defined here
LOG = sys.stderr
PatricUser = None
def createTSVGet(a... | PATRIC3/p3diffexp | lib/diffexp_api.py | Python | mit | 17,928 | [
"Biopython"
] | 3ce8931a4a24db496bf91fd367ffff2355cf5a7f6807b4cdf2f6c73343be0daa |
import SimpleITK as sitk
import matplotlib.pyplot as plt
import ipywidgets as widgets
from IPython.display import display
import numpy as np
from matplotlib.widgets import RectangleSelector
import matplotlib.patches as patches
import matplotlib.cm as cm
from matplotlib.ticker import MaxNLocator
import copy
class Regi... | InsightSoftwareConsortium/SimpleITK-Notebooks | Python/gui.py | Python | apache-2.0 | 64,301 | [
"Gaussian"
] | 9a0837e2e5c01e27f212ff11fd788f0d8ecd66110c089c6aae582c2f80d5a6e3 |
"""
This sample demonstrates a simple skill built with the Amazon Alexa Skills Kit.
The Intent Schema, Custom Slots, and Sample Utterances for this skill, as well
as testing instructions are located at http://amzn.to/1LzFrj6
For additional samples, visit the Alexa Skills Kit Getting Started guide at
http://amzn.to/1LG... | ItsNotABugItsAFeature/transcribe | alexa/startTranscribe.py | Python | mit | 6,780 | [
"VisIt"
] | b808fff5a3116ee16b4bbcd25c9217f64ae998adb26f8d830e289a7caf7e1a8c |
#
# Copyright (C) 2007, Mark Lee
#
#http://rl-glue-ext.googlecode.com/
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required... | steckdenis/rlglue-py3 | rlglue/types.py | Python | apache-2.0 | 4,169 | [
"Brian"
] | 7081833662a347c06898c6716b4bbab0854e511cbdc93aac605d6f767ed19c77 |
"""
This package provides the packages and modules to perform IO from various
input file formats and pymatgen objects.
"""
| Dioptas/pymatgen | pymatgen/io/__init__.py | Python | mit | 123 | [
"pymatgen"
] | 12e40db9cf06391ac34a9aaf3435b6f7a19f0e646dbe7aad13a7bcbb4f1cc53c |
#!/usr/bin/env python
"""
Miscellaneous computations.
Authors:
- Arno Klein, 2012-2013 (arno@mindboggle.info) http://binarybottle.com
- Yrjo Hame, 2012 (yrjo.hame@gmail.com)
Copyright 2013, Mindboggle team (http://mindboggle.info), Apache v2.0 License
"""
def sigmoid(values, gain, shift):
"""
Ma... | binarybottle/mindboggle_sidelined | misc.py | Python | apache-2.0 | 22,033 | [
"VTK"
] | 705c6a0654f1dbcc8e0ad8344bf9e844bcd8b514656bc3b544488e2d8921eee5 |
from django.shortcuts import render
from django.http import HttpResponse
from django.template.loader import get_template
from django.shortcuts import render_to_response
from datetime import datetime, timedelta
import httplib, urllib
import xml.etree.ElementTree as ET
# Create your views here.
def principal(request):
... | NullSleep/Super-Fun-Time | main_content/views.py | Python | gpl-3.0 | 4,790 | [
"COLUMBUS"
] | c718e012be2b3af036f26ec55be0878a4b0fc3b77ee723ef21946caacd9eaf54 |
''' Plugin for CudaText editor
Authors:
Andrey Kvichansky (kvichans on github.com)
Version:
'0.9.6 2016-12-06'
ToDo: (see end of file)
'''
import re, colorsys
import cudatext as app
#from cudatext import ed
#import cudatext_cmd as cmds
import cudax_lib as apx
from .cd_plug_lib ... | vhanla/CudaText | app/py/cuda_palette/__init__.py | Python | mpl-2.0 | 138,324 | [
"Amber",
"BLAST"
] | 62c8bcab63582c6f68e28eb6dd1f725246b6e3b410c1c55268114894d153781f |
"""Testing for Gaussian process classification """
# Author: Jan Hendrik Metzen <jhm@informatik.uni-bremen.de>
# License: BSD 3 clause
import warnings
import numpy as np
from scipy.optimize import approx_fprime
import pytest
from sklearn.gaussian_process import GaussianProcessClassifier
from sklearn.gaussian_proce... | sergeyf/scikit-learn | sklearn/gaussian_process/tests/test_gpc.py | Python | bsd-3-clause | 9,224 | [
"Gaussian"
] | 231847642811263b642454dbc73d5776a056ac63fc8f224514315e084a1b1bc5 |
#!/usr/bin/env python
"""Module to keep track of paths and versions of other software used within the workflow at various intervals."""
import Bio
import argparse
import getpass
import logging
import os
from subprocess import Popen, PIPE, check_call
import sys
__author__ = "Tim te Beek"
__copyright__ = "Copyright 20... | ODoSE/odose.nl | versions.py | Python | mit | 4,752 | [
"BLAST",
"Biopython"
] | 31023b539177f1691df28ed7033201dbea30ac39e3fb546f9693f3a800b90b18 |
import time
import pytest
import numpy as np
import multiprocessing
import psi4
# Test below is fine on its own but erratic through pytest. Most likely
# to succeed as first test collected, so here it lies.
@pytest.mark.xfail(True, reason='threading treatment suspect', run=True)
def test_threaded_blas():
thread... | rmcgibbo/psi4public | tests/pytest/test_aaa_profiling.py | Python | lgpl-3.0 | 1,787 | [
"Psi4"
] | 3a8a43cd77ba4e0988a496967537aaeb971ad3a3115bee4b89e9f982cc5e8e5f |
# Copyright 2014-2020 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by appl... | sunqm/pyscf | pyscf/agf2/uagf2.py | Python | apache-2.0 | 36,471 | [
"PySCF"
] | 8433b056b4c6d80f9abb62f38640bb3f3dff4210eeedf388e589a7aece8ecb99 |
# -*- coding: utf-8 -*-
from __future__ import absolute_import, division, print_function, unicode_literals
# Version: 0.15+dev
"""
HEADS UP!
=========
You are looking at a heavily modified version of the original
[Versioneer](https://github.com/warner/python-versioneer), customized
to fit the development of [OctoPri... | foosel/OctoPrint | versioneer.py | Python | agpl-3.0 | 81,073 | [
"Brian"
] | 2fcae61ee2e82c2a84bd2e3ce6b1921cb5f0a4c1446bbd6ecd48f017e110f853 |
""" Test_RSS_Policy_AlwaysActivePolicy
"""
import unittest
import DIRAC.ResourceStatusSystem.Policy.AlwaysActivePolicy as moduleTested
################################################################################
class AlwaysActivePolicy_TestCase(unittest.TestCase):
def setUp(self):
"""Setup"""
... | DIRACGrid/DIRAC | src/DIRAC/ResourceStatusSystem/Policy/test/Test_RSS_Policy_AlwaysActivePolicy.py | Python | gpl-3.0 | 1,655 | [
"DIRAC"
] | 7ccdd09e7983f21508841e9585ee51c548a6ea72d7098cd88976b17576c93e39 |
# Copyright (c) 2011, 2012 Free Software Foundation
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU Affero General Public License as
# published by the Free Software Foundation, either version 3 of the
# License, or (at your option) any later ver... | gnowledge/ISON | gstudio/models.py | Python | agpl-3.0 | 114,556 | [
"ADF"
] | 26ac632a3776598bae75a90c05a68586766e9b3a094828a74a46817dfc9fe38c |
"""Rewrite assertion AST to produce nice error messages"""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
import ast
import errno
import imp
import itertools
import marshal
import os
import re
import string
import struct
import sys
import types
import atom... | txomon/pytest | src/_pytest/assertion/rewrite.py | Python | mit | 39,457 | [
"VisIt"
] | 6c1238cc60eaf666d5784f5ec65d27ced2195a4525ab312eeba0c27c270c0512 |
# -*- coding: utf-8 -*-
# This file is part of Shuup.
#
# Copyright (c) 2012-2017, Shoop Commerce Ltd. All rights reserved.
#
# This source code is licensed under the OSL-3.0 license found in the
# LICENSE file in the root directory of this source tree.
import os
import pytest
from django.core.urlresolvers import reve... | suutari-ai/shoop | shuup_tests/browser/notify/test_script_template.py | Python | agpl-3.0 | 13,824 | [
"VisIt"
] | e689343b3b59bf2c53f0d73b5a1c5ee8773bc14b667595eb53334bfd5e232988 |
# Copyright (C) 2013 Chris N. Richardson
#
# This file is part of DOLFIN.
#
# DOLFIN is free software: you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later vers... | MiroK/dolfin | demo/undocumented/parallel-refinement/python/demo_parallel-refinement.py | Python | gpl-3.0 | 1,661 | [
"VTK"
] | 09ae2eb17d2120fea47f9ee7872e3f98436add7274c98337e5577c9d26d260cb |
# -*- coding: utf-8 -*-
# @Author: twankim
# @Date: 2017-02-24 17:46:51
# @Last Modified by: twankim
# @Last Modified time: 2018-03-09 22:14:15
import numpy as np
import time
import sys
import os
import argparse
import matplotlib
matplotlib.use('Agg')
import matplotlib.pyplot as plt
from ssac import weakSSAC
from... | twankim/weaksemi | main_local.py | Python | mit | 8,601 | [
"Gaussian"
] | 1cf766d826ec96caea7649b118c163c0c7f0e35c91efa33e962f091fa8cd840c |
#!/usr/bin/python
"""
Several functions. See -h output.
Assign the 1-student function and the submit-grades functions to a hotkey for easy access during class.
Randomly choose a student from the class list, and pop-up their name using operating system Desktop notification.
On the size-N algorithm: I want each group t... | cpbl/classroom_active_learning | classroomActiveLearning.py | Python | gpl-3.0 | 18,696 | [
"ADF"
] | f0b7266beefbf904b31a596bb1540f21815ab687633f5bb8931a53b2a5bdfde3 |
"""
FlexGet build and development utilities - unfortunately this file is somewhat messy
"""
from __future__ import print_function
import os
import subprocess
import shutil
import sys
from paver.easy import *
import paver.virtual
import paver.setuputils
from paver.shell import sh
from paver.setuputils import setup, find... | offbyone/Flexget | pavement.py | Python | mit | 11,354 | [
"GULP"
] | 248a539675a9088faca064cce1cf941b8b8a1d02940d7e6311e3d6b601c60e26 |
""" Description here
Author: Leonard Berrada
Date: 6 Nov 2015
"""
import numpy as np
import pandas as pd
import copy
import matplotlib.pyplot as plt
from regression import RegressionModel
class KalmanFilter(RegressionModel):
""" simple Linear Gaussian Kalman Filter"""
def __init__(self,
d... | leonardbj/AIMS | src/Regression/kalman.py | Python | mit | 1,932 | [
"Gaussian"
] | b214ade30ddbdc6a3970954e660189b679b02a52d2cdfc6652df25c3b41c3230 |
from ase.visualize import view
from ase.io.opls import OPLSStructure
s = OPLSStructure('172_mod.xyz') # 172_mod.xyz if the file name for the structure above
view(s) # view with real elements
elements = { 'CT' : 'Si', 'HC' : 'H', 'H1' : 'He' }
view(s.colored(elements)) # view with fake elements
| grhawk/ASE | tools/doc/ase/io/view_172_mod.py | Python | gpl-2.0 | 296 | [
"ASE"
] | 3d226e29e9417aa2b98d2ec4e557769acb2671b372cdd3ddc0ebfd879d6fe44b |
#!/usr/bin/env python3
# -*- coding: utf-8 -*-
"""\
Bipartie maximum matching
jill-jenn vie et christoph durr - 2014-2018
"""
__all__ = ["max_bipartite_matching", "max_bipartite_matching2"]
# snip{
def augment(u, bigraph, visit, match):
"""augment """
for v in bigraph[u]:
if not visit[v]:
... | jilljenn/tryalgo | tryalgo/bipartite_matching.py | Python | mit | 1,855 | [
"VisIt"
] | 5aa33a6b2c2e7a02aa5d9128174650ecc778b21351b4c8b3aefb4d2e9276d5ce |
#!/usr/bin/env python
"""
.. py:currentmodule:: FileFormat.MicroscopeParameters
.. moduleauthor:: Hendrix Demers <hendrix.demers@mail.mcgill.ca>
MCXRay microscope parameters input file.
"""
# Script information for the file.
__author__ = "Hendrix Demers (hendrix.demers@mail.mcgill.ca)"
__version__ = ""
__d... | drix00/pymcxray | pymcxray/FileFormat/MicroscopeParameters.py | Python | apache-2.0 | 19,275 | [
"CRYSTAL",
"Gaussian"
] | 171474da661173b0dcb77e75343d9e6566e12c0cf391a6960069de683bdfade2 |
# -*- coding: utf-8 -*-
import datetime
import json
import mock
import pytest
import requests_mock
from constance.test import override_config
from django.conf import settings
from django.contrib.sites.models import Site
from django.core import mail
from django.template.loader import render_to_string
from django.utils.... | SphinxKnight/kuma | kuma/wiki/tests/test_views.py | Python | mpl-2.0 | 113,459 | [
"VisIt"
] | 7949d26fa8244a08d1ef4f13ca1913a88bbc79914bfd554dc75bcf018a4dbe7e |
"""
TornadoBaseClient contains all the low-levels functionalities and initilization methods
It must be instantiated from :py:class:`~DIRAC.Core.Tornado.Client.TornadoClient`
Requests library manage itself retry when connection failed, so the __nbOfRetry attribute is removed from DIRAC
(For each URL req... | yujikato/DIRAC | src/DIRAC/Core/Tornado/Client/private/TornadoBaseClient.py | Python | gpl-3.0 | 22,782 | [
"DIRAC"
] | d33ee813234c908ad9b64cf708e64f4d448a72a761558a525ca900c5433b9316 |
import numpy as np
import pyroms
from pyroms_toolbox.BGrid_SODA import BGrid_SODA
def get_nc_BGrid_SODA(grdfile, name='SODA_2.1.6_CORAL', area='regional', \
xrange=(185,340), yrange=(100, 210), ystart=245):
"""
grd = get_nc_BGrid_SODA(grdfile)
Load Bgrid object for SODA 2.1.6 fro... | dcherian/pyroms | pyroms_toolbox/pyroms_toolbox/BGrid_SODA/get_nc_BGrid_SODA.py | Python | bsd-3-clause | 3,646 | [
"NetCDF"
] | b532e0100192b01a127df67dec28144448c931cdcb106c4f2cd926feed2c9aa7 |
import numpy as np
from bayespy.utils import misc
from bayespy.utils import linalg
from .gaussian import GaussianMoments
from .deterministic import Deterministic
class ConcatGaussian(Deterministic):
"""Concatenate Gaussian vectors along the variable axis (not plate axis)
NOTE: This concatenates on the varia... | jluttine/bayespy | bayespy/inference/vmp/nodes/concat_gaussian.py | Python | mit | 3,889 | [
"Gaussian"
] | 72dd48b9c71ffbc7f7062123b5fbc65ee7272d180357aa6bd104f249d28cf4d4 |
# -*- coding: utf-8 -*-
"""
ORCA Open Remote Control Application
Copyright (C) 2013-2020 Carsten Thielepape
Please contact me by : http://www.orca-remote.org/
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as pub... | thica/ORCA-Remote | src/scripts/discover/discover_itach/script.py | Python | gpl-3.0 | 12,378 | [
"ORCA"
] | 7a623842a3379ab0e3c8631266193efb50b3b1d53034c7541051bcdc9106ddfe |
"""A kernel manager for multiple kernels
Authors:
* Brian Granger
"""
#-----------------------------------------------------------------------------
# Copyright (C) 2013 The IPython Development Team
#
# Distributed under the terms of the BSD License. The full license is in
# the file COPYING, distributed as par... | WillisXChen/django-oscar | oscar/lib/python2.7/site-packages/IPython/kernel/multikernelmanager.py | Python | bsd-3-clause | 9,183 | [
"Brian"
] | 0e8db364ae5ab08ae4715fdb9c4941ae64e20013effc689f5c1b60a9c5c77995 |
# coding=utf-8
# Copyright 2022 The Uncertainty Baselines Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by ap... | google/uncertainty-baselines | baselines/jft/checkpoint_utils.py | Python | apache-2.0 | 19,080 | [
"VisIt"
] | 5002fc5084faac011fd31d1606b1f9566f819b35e7254edcd2d863b96b782ec3 |
''' Significant lifting from https://jmetzen.github.io/2015-11-27/vae.html '''
import time
import numpy as np
import tensorflow as tf
from tensorflow.python.ops import rnn
import random
import matplotlib.pyplot as plt
import re, string
from sklearn.feature_extraction.text import CountVectorizer
from collections impo... | dricciardelli/vae2vec | def_def_alt.py | Python | mit | 36,437 | [
"Gaussian"
] | 85e4c8f13bf1f33ec5ae4d162b8f75c8db4165d742e544d830b62295effa9be0 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
import pylid
from collections import Counter
sk = pylid.PyLID(3)
sk.total_ngrams = 85522929
sk.lang = 'sk'
sk.ngrams = Counter({
u'#pr': 817084,
u'#po': 561483,
u'ch#': 483526,
u'#a#': 475597,
u'#na': 412411,
u'ie#': 388611,
u'pre': 363041,
... | dmort27/pylid | pylid/langs/sk.py | Python | mit | 317,125 | [
"ASE",
"BWA",
"EPW",
"Elk",
"MOE"
] | 7f144f22d9f5695c2e23be6ef7d1cba4e4ee30ad7c2c77d7b4cc533514d12179 |
# -*- coding: utf-8 -*-
"""
Regression tests for the Test Client, especially the customized assertions.
"""
from __future__ import unicode_literals
import os
from django.core.urlresolvers import reverse
from django.template import (TemplateSyntaxError,
Context, Template, loader)
import django.template.context
fro... | mdj2/django | tests/test_client_regress/tests.py | Python | bsd-3-clause | 59,629 | [
"VisIt"
] | 394f1ae58db4f5b812d8b8a78ec557c4802fe9376e8920752b55a65e0cdff4ce |
#! /usr/bin/env python3
# -*- coding: utf-8 -*-
# Copyright 2020 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless requ... | googleapis/python-secret-manager | scripts/fixup_secretmanager_v1beta1_keywords.py | Python | apache-2.0 | 6,654 | [
"VisIt"
] | 6867f1dfa7c5caa8a97bb169a0fa4ab6c0e04cb1564187c9f5d181332feb8b6b |
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not use ... | Jc2k/libcloudcore | libcloudcore/tests/test_data.py | Python | apache-2.0 | 5,383 | [
"VisIt"
] | 1adc0b0db1b489c73e07c5baf53c3d75acfa83c1cfebbbb884bcfd12eb52fb41 |
# Copyright 2019 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, s... | google/pyctr | sct/transformer_test.py | Python | apache-2.0 | 8,923 | [
"VisIt"
] | 56860090c97de31b2aa3758d76f1caca7501b87f4795aecaf35a5115231d0a76 |
# class generated by DeVIDE::createDeVIDEModuleFromVTKObject
from module_kits.vtk_kit.mixins import SimpleVTKClassModuleBase
import vtk
class vtkHierarchicalDataLevelFilter(SimpleVTKClassModuleBase):
def __init__(self, module_manager):
SimpleVTKClassModuleBase.__init__(
self, module_manager,
... | chrisidefix/devide | modules/vtk_basic/vtkHierarchicalDataLevelFilter.py | Python | bsd-3-clause | 533 | [
"VTK"
] | 298ef6894895e0048af20cb18b43cc437ecac31c78d2434a6961d064d6ea3e38 |
# -*- coding: utf-8 -*-
#This is generated code - do not edit
encoding = 'utf-8'
dict = {
' of ': ' de ',
'&About...': '&Sobre...',
'&Close Document': 'Fe&char o Documento',
'&Comment Region': '\xc3\x81rea de &Coment\xc3\xa1rios',
'&Delete Window': '%Apagar Janela',
'&Describe Action': '&Descrever Ac\xc3\xa7\xc3\xa3o',... | robmcmullen/peppy | peppy/i18n/pt.py | Python | gpl-2.0 | 18,181 | [
"Gaussian"
] | 160896cd001e81f9a1657f6ea09d567e6c1a51a878f1b1a547934c9c375b2c3d |
"""
.. module:: samples_generator
samples_generator
*************
:Description: samples_generator
:Authors: bejar
:Version:
:Created on: 21/01/2015 9:02
"""
__author__ = 'bejar'
import numpy as np
import numbers
from sklearn.utils import check_random_state, check_array
def make_blobs(n_samples=10... | bejar/kemlglearn | kemlglearn/datasets/samples_generator.py | Python | mit | 5,132 | [
"Gaussian"
] | 15689f9135acec8608dd236aa7d06d3af7ea40418f9ce9b7d85fa0edd52ee38c |
#!/opt/datafax/PHRI/python27
#
# Copyright 2017, Population Health Research Institute
# Copyright 2017, Martin Renters
#
# This file is part of the DataFax Toolkit.
#
# The DataFax Toolkit is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# th... | mrenters/DFtoolkit | dfpython/qc2excel.py | Python | gpl-3.0 | 35,931 | [
"VisIt"
] | ca45f69aabece36bc363608884e9379dd38575c8850f56a6fcf908072ff0c228 |
""" Unit tests for pipelines
"""
import logging
import sys
import unittest
import numpy
from astropy import units as u
from astropy.coordinates import SkyCoord
from data_models.polarisation import PolarisationFrame
from workflows.serial.imaging.imaging_serial import zero_list_serial_workflow, \
predict_list_seri... | SKA-ScienceDataProcessor/algorithm-reference-library | tests/workflows/test_imaging_serial.py | Python | apache-2.0 | 17,056 | [
"Gaussian"
] | 1ffa9f4b831401feaff54d7ee60bb65bcdf5d3c7b7f742dcb34ee666d47552eb |
import os
import os.path
import inspect
import numpy as np
from astropy.io import fits
import yaml
import galsim
import bashes
class Observation(object):
"""
Represents a GREAT3 observation specified by a branch, index (0-199) and epoch.
"""
def __init__(self,branch,index,epoch):
"""
In... | deepzot/bashes | bashes/great3.py | Python | mit | 15,737 | [
"Galaxy",
"Gaussian"
] | ee75b68cb033ebbadb2073ec46e8fd7f790a1aa19f9d4f6bd0b5f7ce1ec9d14d |
#
# ENVISIoN
#
# Copyright (c) 2017-2019 Daniel Thomas
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
#
# 1. Redistributions of source code must retain the above copyright notice, this
# l... | rartino/ENVISIoN | unit_testing/test_DOS_parsing.py | Python | bsd-2-clause | 2,801 | [
"VASP"
] | e1cf92ff2ed41fefcbea60216c80f5157385e1025168a64dc7e7acea6d78f8e7 |
# RPi Meteor Station
# Copyright (C) 2015 Dario Zubovic
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This pr... | CroatianMeteorNetwork/RMS | Tests/CompressionTimings.py | Python | gpl-3.0 | 1,976 | [
"Gaussian"
] | 68e9a358332d96f7d0e41449cdb6edc770b034ece3ea181640d95b7d98444410 |
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
import collections
import os.path
from pymatgen.io.abinit.pseudos import Pseudo, PseudoTable
from pymatgen.util.testing import PymatgenTest
_test_dir = os.path.join(PymatgenTest.TEST_FILES_DIR, "abinit")
def ref_file(file... | materialsproject/pymatgen | pymatgen/io/abinit/tests/test_pseudos.py | Python | mit | 6,615 | [
"ABINIT",
"pymatgen"
] | 4d411199b59c10791a2917b522a31f91cfe0228cc941e3d1b1b88bedf4d4488c |
# Most of this code is:
# (c) 2005 Ian Bicking and contributors; written for Paste (http://pythonpaste.org)
# Licensed under the MIT license: http://www.opensource.org/licenses/mit-license.php
# The server command includes the additional header:
# For discussion of daemonizing:
# http://aspn.activestate.com/ASPN/C... | natefoo/pulsar | pulsar/util/pastescript/serve.py | Python | apache-2.0 | 36,222 | [
"Galaxy"
] | 210cd7eca5affb655e7f57717f6530d8a1a74012847dfd9d7d59476b156d3f5a |
'''<h1>Library for surface x-ray diffraction simulations</h1>
<p> The problem of modelling the sample is divided to four
different classes: Sample, Slab, UnitCell and Instrument.
A Slab is the basic unit that builds up a sample and can
be seen as a quasi-unitcell for the sxrd problem.
Stricitly it is a 2D unitcell with... | jackey-qiu/genx_pc_qiu | models/sxrd_new1.py | Python | gpl-3.0 | 213,492 | [
"CRYSTAL",
"Gaussian"
] | 9add43ab733fb4d459e41860231e4b1d12b05c81e23fdd9c5f1b35ca430f9992 |
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