text stringlengths 12 1.05M | repo_name stringlengths 5 86 | path stringlengths 4 191 | language stringclasses 1
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"""Transform a string with Python-like source code into SymPy expression. """
from __future__ import print_function, division
from .sympy_tokenize import \
generate_tokens, untokenize, TokenError, \
NUMBER, STRING, NAME, OP, ENDMARKER
from keyword import iskeyword
import ast
import re
import unicodedata
im... | AunShiLord/sympy | sympy/parsing/sympy_parser.py | Python | bsd-3-clause | 29,878 | [
"VisIt"
] | 966047c34944a6eb571e7f89a34afde38dbabc6f4c90558363dcc8bcec1ea6ce |
#!/usr/bin/env python
"""
Compute homogenized elastic coefficients for a given microstructure.
"""
from __future__ import print_function
from __future__ import absolute_import
from argparse import ArgumentParser
import sys
import six
sys.path.append('.')
import numpy as nm
from sfepy import data_dir
import sfepy.disc... | lokik/sfepy | examples/homogenization/rs_correctors.py | Python | bsd-3-clause | 8,679 | [
"VTK"
] | 6326b40f9b1b784dc54b17e6b546ab92dd20cf7a71f262caf549c7de2b8b0b46 |
import os, subprocess
#########################################
def generate(params):
# change to topology directory
currdir = params.rundirs.top_dir
os.chdir("/".join([params.run_options.workdir, currdir]))
pdbname = params.run_options.pdb
pdbfile = pdbname+".pdb"
topfile = pdbname+".top"
grofile = pdbname+".g... | ivanamihalek/smallmol | gmx_lib/gro_and_top.py | Python | gpl-2.0 | 2,279 | [
"Amber"
] | 3b2c4cb6c6342967cac1e8b59d24dec5ab3e3581261eb3c46cfb94d15a79ae2b |
"""Rewrite assertion AST to produce nice error messages"""
from __future__ import absolute_import, division, print_function
import ast
import _ast
import errno
import itertools
import imp
import marshal
import os
import re
import struct
import sys
import types
import py
from _pytest.assertion import util
# pytest ca... | alexzoo/python | selenium_tests/env/lib/python3.6/site-packages/_pytest/assertion/rewrite.py | Python | apache-2.0 | 36,453 | [
"VisIt"
] | a017c738fa852a1f6bff9c3295d42123e1c345693fe0706c93babd6f6f04b974 |
"""The PyRhO package setup script"""
#from __future__ import print_function # Added for Python 2.x support
from setuptools import setup, find_packages # Prefer setuptools over distutils
from codecs import open # To use a consistent encoding
import os
# Download and install setuptools if n... | ProjectPyRhO/PyRhO | setup.py | Python | bsd-3-clause | 8,243 | [
"Brian",
"NEURON"
] | f91c217f77562a1642b33713d9f162835639d80ae3f493202c9aa64d6d80f668 |
from __future__ import absolute_import
from __future__ import print_function
# #START_LICENSE###########################################################
#
#
# This file is part of the Environment for Tree Exploration program
# (ETE). http://etetoolkit.org
#
# ETE is free software: you can redistribute it and/or modify... | fmaguire/ete | ete3/tools/phylobuild_lib/task/cog_creator.py | Python | gpl-3.0 | 22,224 | [
"BLAST"
] | 1ae7229992e0e8a06b7b7fa05ba87ee570befe99c36e909e5b866aa519c5b7cf |
#!/usr/bin/env python
########################################################################
# $HeadURL$
########################################################################
__RCSID__ = "$Id$"
from DIRAC.Core.Base import Script
Script.setUsageMessage( """
Remove the given file or a list of files from the File C... | sposs/DIRAC | DataManagementSystem/scripts/dirac-dms-remove-files.py | Python | gpl-3.0 | 1,664 | [
"DIRAC"
] | 758b742b296f9465af9a18e72bc06c344be0e2a6774ebc3c61dba167b7e0ec4f |
"""Tests for the thumbs module"""
import pytest
from bok_choy.promise import EmptyPromise
from workbench import scenarios
from workbench.test.selenium_test import SeleniumTest
class ThreeThumbsTest(SeleniumTest):
"""Test the functionalities of the three thumbs test XBlock."""
def setUp(self):
supe... | edx/xblock-sdk | workbench/test/test_filethumbs.py | Python | apache-2.0 | 3,181 | [
"VisIt"
] | 778b107ff4f79cebb9c1d8e17d5198beec365fcd43cf35b39932741bba2a3473 |
############################################
# Daniel Dixey
# Datagenic - Interest in Sentiment Analysis
# 28/4/15
############################################
# Import Modules
from textblob import TextBlob
from textblob.sentiments import NaiveBayesAnalyzer
import time
from pattern.web import Twitter
def Harry_Potte... | dandxy89/ExperiKeras | NLP/Sentiment_Harry_Potter_Review.py | Python | mit | 3,129 | [
"exciting"
] | 95f3746c3f9cce72b18085247181d8a853b51010f766f6d724cd17c58ebf6c68 |
__author__ = 'noe'
import numpy as _np
def _guess_model_type(observations):
""" Suggests a HMM model type based on the observation data
Uses simple rules in order to decide which HMM model type makes sense based on observation data.
If observations consist of arrays/lists of integer numbers (irrespective... | marscher/bhmm | bhmm/api.py | Python | lgpl-3.0 | 11,746 | [
"Gaussian"
] | 261f129e4505d4efa60346cfb076a34ad84192373f4048b44549ab3064796959 |
#!/usr/bin/python
################################################################################
#
# SOAP.py 0.9.7 - Cayce Ullman (cayce@actzero.com)
# Brian Matthews (blm@actzero.com)
#
# INCLUDED:
# - General SOAP Parser based on sax.xml (requires Python 2.0)
# - General SOAP Builder
# ... | mikemintz/neutron | modules/SOAP.py | Python | gpl-2.0 | 130,709 | [
"Brian"
] | bbc8c94022f3ed945dd8cc5293b5a8f0e5184f34680c1c62bcb05aa7040d6685 |
import paraBEM
from paraBEM.pan3d import doublet_src_3_0_vsaero, src_3_0_vsaero_v
from paraBEM.vtk_export import VtkWriter
import numpy
from paraBEM.utils import check_path
v1 = paraBEM.PanelVector3(-0.5, -0.5, 0)
v2 = paraBEM.PanelVector3(0.5, -0.5, 0)
v3 = paraBEM.PanelVector3(0.5, 0.5, 0)
v4 = paraBEM.PanelVector3(... | looooo/paraBEM | examples/vtk/vtk_panel_source.py | Python | gpl-3.0 | 937 | [
"VTK"
] | e2d0d19f53bdd27553997c1090e2fa65efa9daaa3d2c4f349b4358230bce9ceb |
#
# Copyright (c) 2008--2016 Red Hat, Inc.
#
# This software is licensed to you under the GNU General Public License,
# version 2 (GPLv2). There is NO WARRANTY for this software, express or
# implied, including the implied warranties of MERCHANTABILITY or FITNESS
# FOR A PARTICULAR PURPOSE. You should have received a c... | lhellebr/spacewalk | backend/server/rhnChannel.py | Python | gpl-2.0 | 70,178 | [
"VisIt"
] | a7f112ac4a539a072744a00185565a30b12a9538aada86b73cd6a67851c51f96 |
#
# ----------------------------------------------------------------------------------------------------
#
# Copyright (c) 2015, Oracle and/or its affiliates. All rights reserved.
# DO NOT ALTER OR REMOVE COPYRIGHT NOTICES OR THIS FILE HEADER.
#
# This code is free software; you can redistribute it and/or modify it
# u... | graalvm/mx | mx_compat.py | Python | gpl-2.0 | 17,513 | [
"VisIt"
] | 613907b5bd074b3d60a713659248ab6f2ceccfee38c016d67b5cd993744fc4e6 |
# Orca
#
# Copyright 2005-2008 Google Inc.
#
# This library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License as published by the Free Software Foundation; either
# version 2.1 of the License, or (at your option) any later version.
#
# This library i... | Alberto-Beralix/Beralix | i386-squashfs-root/usr/share/pyshared/orca/dectalk.py | Python | gpl-3.0 | 14,816 | [
"ORCA"
] | 7b1d28780b981e1b1edbf3c24ebb06115a4009f2cfbb1ba6c7ad534433f870f1 |
""" Test functions for stats module
"""
from __future__ import division, print_function, absolute_import
import warnings
import re
import sys
import pickle
from numpy.testing import (TestCase, run_module_suite, assert_equal,
assert_array_equal, assert_almost_equal, assert_array_almost_equal,
assert_allclose,... | HesselTjeerdsma/Cyber-Physical-Pacman-Game | Algor/flask/lib/python2.7/site-packages/scipy/stats/tests/test_distributions.py | Python | apache-2.0 | 117,215 | [
"Gaussian"
] | ceb1c78a046ced8c5f7e11be78d75fb89f7c7b2750671683f646b3b8f0a46c15 |
#
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not us... | mxm/incubator-beam | sdks/python/apache_beam/transforms/ptransform.py | Python | apache-2.0 | 30,477 | [
"VisIt"
] | 5168fefe95dd2ab68deb881177ded9103b172158573f92a47cec7339e5aa7554 |
"""Decision module.
This module contains the different decision functors used by agents to call actions.
Also contains helper classes used by these.
Designed and developed by Sever Topan.
"""
# Standard.
import os
import sys
import re
import pickle
import random
import re
import copy
import math
# Third party.
from... | SeverTopan/AdjSim | adjsim/decision.py | Python | gpl-3.0 | 44,149 | [
"Gaussian"
] | 38ca0df276f735477b7ac56546b7bcb3888d99544a2627c336a625da8a61069f |
#! /usr/bin/env python
"""Locate files using fuzzy matching."""
from __future__ import division
import os.path
import sys
def locate(filename, start):
"""Search the filesystem under start for filename.
@param filename: The filename to look for.
@param start: The starting directory.
@return: A list of... | nickpascucci/AppDesign | search/locate.py | Python | mit | 2,002 | [
"VisIt"
] | 393d3f706af21f9ae471b4a7cf952b84b5cc1ab3cce38cb72429c636afa68c51 |
#!/usr/bin/env python
"""
Calculate cloud duration, minimum base, maximum height, mean mass, formation
time, dissipation time, maximum depth, depth evolution and corresponding times
for tracked clouds.
Output is saved in a pkl file as a list of dictionaries, with one dictionary per
cloud id. Dictionary keys are: 'i... | vladpopa/ent_analysis | id_stats/condensed_id_stats.py | Python | mit | 3,685 | [
"NetCDF"
] | 7681abb048631fde02a667ee368753f8f8d72bd4d25739e67c526e31623bb287 |
#!/galaxy/home/mgehrin/hiclib/bin/python
"""
Read a MAF from standard input and print the score of each block. It can
optionally recalculate each score using the hox70 matrix, and normalize the
score by the number of columns in the alignment.
TODO: Should be able to read an arbitrary scoring matrix.
usage: %prog [... | bxlab/HiFive_Paper | Scripts/HiCLib/bx-python-0.7.1/build/scripts-2.7/maf_print_scores.py | Python | bsd-3-clause | 1,601 | [
"Galaxy"
] | 7e4b2a487185316be85f20c904de80add2ee758ee539439dee0ca8404f823999 |
import matplotlib
matplotlib.use("TkAgg")
import tkinter as tk
import timeit
import io
import sys
import traceback
import math
from math import sqrt
from sympy import ln
from algorithms.chebyshev import chebyshev
from algorithms.cubicsplines import cubicSpline
from algorithms.leastSquares import leastSquares
from algo... | protocol114/numerical-2.2 | project.py | Python | mit | 13,010 | [
"Gaussian"
] | 6a143d4d7d9a5fc79d0bc2bbdb2a19af2b4688ba5c0c9c63e1f1c9b0baa60684 |
"""
This implements the value recursion for numerical semirings.
V(v) = \bigoplus_{e \in BS(v)} \omega(e) \bigotimes_{u \in tail(e)} V(u)
We also have an implementation which is robust to the presence of cycles.
:Authors: - Wilker Aziz
"""
from collections import defaultdict
from functools import reduce
from gr... | wilkeraziz/grasp | grasp/inference/value.py | Python | apache-2.0 | 11,897 | [
"VisIt"
] | f66716673cf9738d4a1ef7ad51baab14b343cdaf15f7c4da5c4cd1eb216f96d7 |
#!/usr/bin/env python
########################################################################
# $HeadURL$
# File : dirac-jobexec
# Author : Stuart Paterson
########################################################################
__RCSID__ = "$Id$"
""" The dirac-jobexec script is equipped to execute workflows that... | avedaee/DIRAC | WorkloadManagementSystem/scripts/dirac-jobexec.py | Python | gpl-3.0 | 3,212 | [
"DIRAC"
] | 6502b3ab5118cf24713f92bac5804438ee7c50f709771961929a7eca8cd643a9 |
#--------------------------------------------------------------------------
# Software: InVesalius - Software de Reconstrucao 3D de Imagens Medicas
# Copyright: (C) 2001 Centro de Pesquisas Renato Archer
# Homepage: http://www.softwarepublico.gov.br
# Contact: invesalius@cti.gov.br
# License: GNU ... | tatiana/invesalius | invesalius/gui/dicom_preview_panel.py | Python | gpl-2.0 | 27,079 | [
"VTK"
] | 83e90d5a9c7a9eb2dc5367b574afbd30db9367e80683126ede0a3afb81b741b7 |
#!/usr/bin/python
#
# Created on Aug 25, 2016
# @author: Gaurav Rastogi (grastogi@avinetworks.com)
# Eric Anderson (eanderson@avinetworks.com)
# module_check: supported
# Avi Version: 17.1.1
#
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the te... | RackSec/ansible | lib/ansible/modules/network/avi/avi_systemconfiguration.py | Python | gpl-3.0 | 6,203 | [
"VisIt"
] | 4c921a39965a20d06cdb5d6c18f750feb939a862d939feba1c1fed5ec1a65dc1 |
import re
from .. import lut, manip
from . import helpers
section_re = re.compile(r'^\$(basis|ecp|cbas|jbas|jkbas)$')
element_re = re.compile(r'^([a-zA-Z]{1,3})\s+(.*)$')
shell_re = re.compile(r'^(\d+) +([a-zA-Z])$')
ecp_info_re = re.compile(r'^ncore\s*=\s*(\d+)\s+lmax\s*=\s*(\d+)$', flags=re.IGNORECASE)
ecp_pot_am_re... | MOLSSI-BSE/basis_set_exchange | basis_set_exchange/readers/turbomole.py | Python | bsd-3-clause | 7,786 | [
"TURBOMOLE"
] | 0fd69b85f1e80c64dc972f4564b83dbbb36edafd3167d90d6e22b2ac3ae384eb |
"""
Convergence comparison of different adaptive filtering algorithms (with
different step sizes) in white Gaussian noise.
"""
import numpy as np
import matplotlib.pyplot as plt
import adaptfilt as adf
# Generating inpud and desired signal
N = 3000
coeffs = np.concatenate(([-4, 3.2], np.zeros(20), [0.7], np.zeros(33)... | Wramberg/adaptfilt | examples/convergence.py | Python | mit | 1,879 | [
"ADF",
"Gaussian"
] | be544ba7ce83cad5ff1d7cf415c8f170d319b6479f2e2fd76b0cb0408cdfb310 |
#!/bin/env python2.7
# -*- coding: utf-8 -*-
"""
Created on Monday March 27
@author: Brian L. Dorney
"""
#Imports
import sys, os
import numpy as np
from Utilities import *
from ROOT import gROOT, Double, TCanvas, TDirectory, TF1, TFile, TGraph2D, TGraphErrors, TH1F, TH2F, TLegend
class AnalysisSuiteGai... | bdorney/CMS_GEM_Analysis_Framework | python/AnalysisSuiteGainMap.py | Python | gpl-3.0 | 30,373 | [
"Brian"
] | fbf3e47eb21a43e01efa99a2fa2e5fb075a6ceb6b34c36cb71561e101991a100 |
#!/usr/bin/env python
#
# Copyright 2012 the V8 project authors. All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are
# met:
#
# * Redistributions of source code must retain the above copyright
# noti... | guorendong/iridium-browser-ubuntu | v8/tools/presubmit.py | Python | bsd-3-clause | 15,774 | [
"VisIt"
] | 76da2814bd8161d8fa821d82d9725c5f67d88c4d75b76d0a096c8a5bb9533ce0 |
from functools import partial
from client.player import Player
from client.updater import fetchClientUpdate
from config import Settings
import fa
from fa.factions import Factions
'''
Created on Dec 1, 2011
@author: thygrrr
'''
from PyQt4 import QtCore, QtGui, QtNetwork, QtWebKit
from PyQt4.QtCore import QDataStream
... | Sheeo/client | src/client/_clientwindow.py | Python | gpl-3.0 | 60,694 | [
"VisIt"
] | f242d3e17a255ef32bab2ab945047f523b1af2d8769a14cd5f1fa81f3ac82690 |
#-------------------------------------------------------------------------------
# Name: MODIS-Link-Retrieve
# Purpose: Retrieve latest NetCDF chlorophyll file from NASA MODIS - Different URLS than other script in this Repo
#
# Author: JFry
#
# Created: 12/10/2015
# Edited: 11/30/2016
# Copyrig... | jfrygeo/FishSuitabilityTemplate | Process-MODIS-Data-py.py | Python | apache-2.0 | 2,743 | [
"NetCDF"
] | 40d8360fff195abb8572f511c4c52a8e015bcadf8bcdc19d55be52005100fb09 |
#!/usr/bin/env python
# -*- coding: latin-1 -*-
#
# Copyright 2016-2019 Blaise Frederick
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICEN... | bbfrederick/rapidtide | rapidtide/disabledtests/xtest_spectrogram.py | Python | apache-2.0 | 9,837 | [
"Gaussian"
] | e695c578542a3b91da6842a4ec332e98a0983be5d41445306a37f7363c42d1a8 |
#!/usr/bin/env python
# Copyright 2015 The Kubernetes Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by appli... | mdshuai/service-catalog | vendor/k8s.io/kubernetes/hack/boilerplate/boilerplate.py | Python | apache-2.0 | 6,214 | [
"VisIt"
] | d21ad7ff546143653bd381d09f7c655415d10374442ed75470db916915be0159 |
from ase import Atoms
from gpaw import GPAW, PW, FermiDirac
# Setup up bulk NiO in an antiferromagnetic configuration:
a = 4.19 # lattice constants
b = a / 2**0.5
m = 2.0
atoms = Atoms('Ni2O2',
pbc=True,
cell=(b, b, a),
positions=[(0, 0, 0),
(b / 2, b... | robwarm/gpaw-symm | doc/tutorials/hubbardu/nio.py | Python | gpl-3.0 | 770 | [
"ASE",
"GPAW"
] | 7a770d3600268e782ca49414dcb0f66859d4b643b29ffb99cb1f901ee5f31d23 |
# -*- coding: utf-8 -*-
from __future__ import print_function
"""CLI scripts."""
#------------------------------------------------------------------------------
# Imports
#------------------------------------------------------------------------------
import argparse
import os
import os.path as op
import glob
import ... | rossant/ipymd | ipymd/core/scripts.py | Python | bsd-3-clause | 6,417 | [
"VisIt"
] | 5b6ec1c9cc0abac873db0c929d593917b810496ad630a66026fa9ee443cfc727 |
# -*- Mode: Python; coding: utf-8; indent-tabs-mode: nil; tab-width: 4 -*-
### BEGIN LICENSE
# Copyright (C) 2014 Brian Douglass bhdouglass@gmail.com
# This program is free software: you can redistribute it and/or modify it
# under the terms of the GNU General Public License version 3, as published
# by the Free Softwa... | bhdouglass/agui | agui/aextras/__init__.py | Python | gpl-3.0 | 997 | [
"Brian"
] | 7a2ee2e7b6d96b34b801436d922eb3a85f13fc7f14c1653be5ed2e930a80a4b3 |
#!/usr/bin/env python3
from LoLIM.stationTimings.autoCorrelator3_fromLOC import save_EventByLoc
## these lines are anachronistic and should be fixed at some point
from LoLIM import utilities
utilities.default_raw_data_loc = "/exp_app2/appexp1/public/raw_data"
utilities.default_processed_data_loc = "/home/brian/proces... | Bhare8972/LOFAR-LIM | LIM_scripts/stationTimings/examples/save_pulseByLoc.py | Python | mit | 1,923 | [
"Brian"
] | 121934297c8eaa27a00653ddb6adcc55c6e5a1a1dfec33432a17e8295bf58f2e |
# author: brian dillmann
# for rscs
from context import AnalogInput
import unittest
import RPi.GPIO as GPIO
class test_analog_input(unittest.TestCase):
def setUp(self):
self.out_pin = 2
GPIO.setmode(GPIO.BCM)
GPIO.setwarnings(False)
def test_init(self):
# try to initialize output with illegal location
w... | dillmann/rscs | test/devicetests/analog_input_test.py | Python | mit | 714 | [
"Brian"
] | 91cb159713634626f8720996e486cced340351b339ca5d4aa7ff0349a3779dc6 |
import logging
import logging.handlers
import sys
from octopus.lib.mail import send_mail
class TlsSMTPHandler(logging.Handler):
def __init__(self, mailhost, mailport, fromaddr, toaddrs, subject, credentials):
super(TlsSMTPHandler, self).__init__()
self.mailhost = mailhost
self.mailport =... | JiscPER/magnificent-octopus | octopus/lib/error_handler.py | Python | apache-2.0 | 2,775 | [
"Octopus"
] | 4ed5fe7e1d1012602cf137fe63911386a299a44e792c27369cc7934cc963f06e |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
from __future__ import unicode_literals, division, print_function
import os
import unittest2 as unittest
import numpy as np
from pymatgen import Structure
from pymatgen.util.testing import PymatgenTest
from py... | aykol/pymatgen | pymatgen/io/abinit/tests/test_netcdf.py | Python | mit | 3,021 | [
"ABINIT",
"pymatgen"
] | bc56630c698fa5b22745367f678a57decba38b22318a5f40d10483f81e78c653 |
"""`swordfish` is a Python tool to study the information yield of counting experiments.
Motivation
----------
With `swordfish` you can quickly and accurately forecast experimental
sensitivities without all the fuss with time-intensive Monte Carlos, mock data
generation and likelihood maximization.
With `swordfish` y... | cweniger/swordfish | swordfish/__init__.py | Python | mit | 3,174 | [
"Gaussian"
] | c8059b7c2703d51e2f9c10fccabe3abc3aac029b56b40fe89eae5941ff85f99a |
# Orca
#
# Copyright (C) 2013-2014 Igalia, S.L.
#
# Author: Joanmarie Diggs <jdiggs@igalia.com>
#
# This library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License as published by the Free Software Foundation; either
# version 2.1 of the License, or (... | GNOME/orca | src/orca/scripts/toolkits/GAIL/script.py | Python | lgpl-2.1 | 4,622 | [
"ORCA"
] | fd9c1b3efae23b2407556db981dacb27c98246cced26926a91198300bb28afed |
#!/usr/bin/python
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2022 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This file is part of Psi4.
#
# Psi4 is free software; you can redistribute... | susilehtola/psi4 | doc/sphinxman/document_efpfrag.py | Python | lgpl-3.0 | 5,033 | [
"Psi4"
] | c8e817613b5799a5aee9bea073c03237b2689a77699219d4a59409d6146d853a |
""" ProxyProvider implementation for the proxy generation using local (DIRAC) CA credentials
This class is a simple, limited CA, its main purpose is to generate a simple proxy for DIRAC users
who do not have any certificate register on the fly.
Required parameters in the DIRAC configuration for its implem... | yujikato/DIRAC | src/DIRAC/Resources/ProxyProvider/DIRACCAProxyProvider.py | Python | gpl-3.0 | 16,966 | [
"DIRAC"
] | e74a6ca0455409a14f221e02205e78112cc3b7b6bc9d67d73398b9dc573a0e82 |
import numpy as np
from scipy.optimize import leastsq
import pylab as pl
def get_orbitals(calc):
"""Get LCAO orbitals on 3D grid by lcao_to_grid method."""
bfs_a = [setup.phit_j for setup in calc.wfs.setups]
from gpaw.lfc import BasisFunctions
bfs = BasisFunctions(calc.wfs.gd, bfs_a, calc.wfs.kp... | qsnake/gpaw | gpaw/response/tool.py | Python | gpl-3.0 | 4,198 | [
"GPAW"
] | 8a367588e95b7fea3753e0bafb0fdfed25ba67d2b3355948614c52762a1e31d8 |
# Copyright 2017 The Sonnet Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable l... | rakshit-agrawal/sonnet | sonnet/examples/brnn_ptb.py | Python | apache-2.0 | 22,701 | [
"Gaussian"
] | b41f573a3c1f7bfc5c68b575193ff9924c33a995f141d8f682709c1777e739ba |
"""
Usage: python_visitor_gui.py
This script shows how one can implement visitors
in pure python and inject them into OpenGM solver.
( not all OpenGM solvers support this kind of
code injection )
"""
import opengm
import numpy
import matplotlib
from matplotlib import pyplot as plt
shape=[100,100]
numLabels=... | joergkappes/opengm | src/interfaces/python/examples/python_visitor_gui.py | Python | mit | 1,377 | [
"VisIt"
] | 2d93d0b9918e864f3b0792e3a669d1b24a193e378db08d031348a1d53b318973 |
# -*- coding: utf-8 -*-
from __future__ import absolute_import
from __future__ import division
############################################################################
#
# Copyright (C) 2008-2015
# Christian Kohlöffel
# Vinzenz Schulz
#
# This file is part of DXF2GCODE.
#
# DXF2GCODE is free software: ... | hehongyu1995/Dxf2GCode | dxfimport/geoent_polyline.py | Python | gpl-3.0 | 9,035 | [
"Gaussian"
] | 5ee3f3f3ec9b7c3085bde62770ded6318286a629b886becde9d0e2fb17b28aa0 |
# Licensed under the Apache License, Version 2.0 (the "License"); you may
# not use this file except in compliance with the License. You may obtain
# a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under t... | briancurtin/python-openstacksdk | openstack/tests/unit/test_resource.py | Python | apache-2.0 | 53,273 | [
"Brian",
"MOE"
] | 5327e979410258ef6393aef25bb3d9e7b863b2d79b1a0e870ee33e24e63cbc2d |
# -*- coding: utf-8 -*-
# Copyright 2007-2021 The HyperSpy developers
#
# This file is part of HyperSpy.
#
# HyperSpy is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at... | thomasaarholt/hyperspy | hyperspy/_components/skew_normal.py | Python | gpl-3.0 | 9,640 | [
"Gaussian"
] | 26e78c34beb21d400baa83277c597768319b0666415a025379f85f79f20cb6b6 |
# Copyright (c) 2012, Cloudscaling
# All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License"); you may
# not use this file except in compliance with the License. You may obtain
# a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable... | petrutlucian94/nova | nova/hacking/checks.py | Python | apache-2.0 | 21,668 | [
"VisIt"
] | 0ef54a6b9c8946f8a5de0e20d1b40db8d02486fe6ada23d325d2f9536fa493e1 |
""" Plot the inference results
"""
import os
import numpy as np
import matplotlib
matplotlib.use('Agg') # To enable saving remotely
import matplotlib.pyplot as plt
from matplotlib.colors import LinearSegmentedColormap
# Get a red-white-black cmap
cdict = {'red': ((0.0, 1.0, 1.0),
(0.5, 1.0, 1.... | slinderman/theano_pyglm | pyglm/plotting/plot_results.py | Python | mit | 28,517 | [
"NEURON"
] | 96f2b1ba192fbc731ebd881708f0843e1e5a184c019e140374c2f715ed11c12c |
# Copyright (C) 2010-2018 The ESPResSo project
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later v... | mkuron/espresso | testsuite/python/lb_thermostat.py | Python | gpl-3.0 | 3,044 | [
"ESPResSo"
] | 5e61f6219546f477beaa7caad2e72bc0a9c8efffb00afc330f983f4dabb6d986 |
#!/usr/bin/env python
try:
# python 2
import xmlrpclib
except:
# python 3
import xmlrpc.client as xmlrpclib
import time
import tempfile
import os.path
import sys
import pyBigWig
from deeptools.utilities import mungeChromosome
from deeptoolsintervals import GTF
import datetime
def isDeepBlue(fname):
... | fidelram/deepTools | deeptools/deepBlue.py | Python | gpl-3.0 | 10,950 | [
"BWA"
] | 21ec2848d56c6ae9b98772665273000ca764d776adf024db554f498b1c1dc9f7 |
from io import StringIO
from django.contrib.messages import get_messages
from django.core.management import call_command
from django.test import TestCase
from django.urls import reverse
from core.models import (
User, Batch, Section, Election, UserType, VoterProfile
)
class LoginViewTest(TestCase):
"""
... | seanballais/botos | tests/test_auth_views.py | Python | gpl-3.0 | 9,194 | [
"VisIt"
] | b120bca9646fe666ace6c6358ebd84c007b59f8bfd83e98fddef0c261774bae2 |
import sys
from copy import copy
import numpy as nm
from sfepy.base.base import (complex_types, dict_from_keys_init,
assert_, is_derived_class,
insert_static_method, output, get_default,
get_default_attr, Struct, basestr)
from sfep... | RexFuzzle/sfepy | sfepy/discrete/fem/meshio.py | Python | bsd-3-clause | 86,536 | [
"VTK"
] | a63a9606d4438fe59c1787039ddb15982e09f9236925458dddaa07a11143a8f1 |
#!/usr/bin/python
import sys
from ctypes import *
from functions import *
from math import sqrt
import numpy as np
import multiprocessing
import pyfits
import signal
# Load the library for the CFitsio routines
overseer = CDLL("/home/steven/Projects/galaxy_icd/libraries/liboverseer.so.0")
def main(sample):
naxes ... | boada/ICD | parallel_main_gsd.py | Python | mit | 5,357 | [
"Galaxy"
] | d44f2bfbb466dfbf4e23a48cf44c35f1857f6ba3a08121af5aaab2416284f94f |
import types
from moose import *
rng = ["Binomial", "Exponential", "Gamma", "Normal", "Poisson" ]
mooseClasses = []
class MooseClasses:
def __init__(self):
self._classList = []
class_file = open("classes.txt", "r")
for class_name in class_file:
class_name = class_name.strip()
if len(class_name) > 0:
... | BhallaLab/moose-thalamocortical | pymoose/tests/regression/TestClassCreation.py | Python | lgpl-2.1 | 932 | [
"MOOSE"
] | 7b1fe0408e9bbe8e6187012fa40d6c9e0d8344ccd7de6cdad9dcb17734ffa90d |
# -*- coding: utf-8 -*-
# Author: Jan Hendrik Metzen <jhm@informatik.uni-bremen.de>
# Vincent Dubourg <vincent.dubourg@gmail.com>
# (mostly translation, see implementation details)
# License: BSD 3 clause
"""
The :mod:`sklearn.gaussian_process` module implements Gaussian Process
based regression and c... | scikit-learn/scikit-learn | sklearn/gaussian_process/__init__.py | Python | bsd-3-clause | 530 | [
"Gaussian"
] | 93362b7d7abc387bc358268a0eb92c519e550d6456b1d120d43c58cb7b2bffab |
import numpy as np
import cPickle, gzip
from sklearn.manifold import TSNE
def convert_to_Y(y):
n = y.shape[0]
Y = np.zeros((n, np.unique(y).size))
Y[np.arange(n), y] = 1
return Y
def double_swiss_roll(n_samples = 250, var = 1.):
'''details about the generating procedure can be found at
http://... | quark0/AnchorClouds | manifold_generator.py | Python | mit | 1,459 | [
"Gaussian"
] | 21804cb600577b82f93132a549d3dd23881702c43c260fe700fb6a184a19fb48 |
# Mantid Repository : https://github.com/mantidproject/mantid
#
# Copyright © 2018 ISIS Rutherford Appleton Laboratory UKRI,
# NScD Oak Ridge National Laboratory, European Spallation Source
# & Institut Laue - Langevin
# SPDX - License - Identifier: GPL - 3.0 +
#pylint: disable=no-init,invalid-name
from __... | mganeva/mantid | Framework/PythonInterface/plugins/algorithms/USANSSimulation.py | Python | gpl-3.0 | 6,752 | [
"Gaussian"
] | ba75c76310c1e14518c959ccd0acd39d7eb9df2272bd1a7edbc6ba42468c40fe |
from coyote_framework.testing.coyote_test import CoyoteTest
from example.example_app.config.example_config import ExampleConfig
from coyote_framework.drivers.coyote_driverfactory import driver_context
from example.example_app.page_objects.example_home_page import ExampleHomePage
__author__ = 'matt'
class TestClickBu... | Shapeways/coyote_framework | example/example_tests/TestClickButton_ShowText.py | Python | mit | 1,605 | [
"VisIt"
] | 5715f9539506c2b87deeb5aa0f07fdd9e752e12a346f6733076b1c65248a9343 |
# This file is part of BHMM (Bayesian Hidden Markov Models).
#
# Copyright (c) 2016 Frank Noe (Freie Universitaet Berlin)
# and John D. Chodera (Memorial Sloan-Kettering Cancer Center, New York)
#
# BHMM is free software: you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public Licen... | bhmm/bhmm | bhmm/output_models/discrete.py | Python | lgpl-3.0 | 14,141 | [
"Gaussian"
] | 90352bc61e7a07d6193b7a0d182dd38e312d7088d7688c541089dd7088ee7b5a |
from django.conf import settings
from django.conf.urls import include, url
from django.conf.urls.static import static
from django.contrib import admin
from django.views.generic import TemplateView
from django.views import defaults as default_views
urlpatterns = [
url(r'^$', TemplateView.as_view(template_name='page... | ochronus/teamhealth.io | config/urls.py | Python | mit | 1,553 | [
"VisIt"
] | 3eda8c4eb236021c0cfe4d6987f9b9d602b5cf0a15c860e5fd36e9bf81d05300 |
#! /usr/bin/env python
#This script check all pdb files using pdb2gmx
# check_structures_gromacs.py <PDB path> <GROMACS programs path>
# Example: python check_structures_gromacs.py /home/faccioli/Execute/1VII/ /home/faccioli/Programs/gmx-4.6.5/no_mpi/bin/
import sys
import os
from subprocess import Popen, PIPE
import... | rodrigofaccioli/2pg_cartesian | scripts/checking/rename_atoms.py | Python | apache-2.0 | 1,895 | [
"Gromacs"
] | 14ecbd285c9ba02a565ae4ca530d75cb00c69dd1d6f3e719c6e28541c4a22efa |
# vim:fileencoding=utf-8:noet
from __future__ import (unicode_literals, division, absolute_import, print_function)
import sys
import os
from functools import partial
from collections import namedtuple
from time import sleep
from platform import python_implementation
from powerline.segments import shell, tmux, pdb, i... | codeprimate/arid | powerline/tests/test_python/test_segments.py | Python | bsd-2-clause | 86,678 | [
"FEFF"
] | b0ea4ee0e3fcffc07ca2ad4074d9d47ecfa5a3b3303af05db94a8fb05074881a |
#!/usr/bin/env python
from DIRAC.Core.Base.Script import parseCommandLine
parseCommandLine()
import sys
if len( sys.argv ) < 2:
print 'Usage: dirac-transformation-remove-output transID [transID] [transID]'
sys.exit()
else:
transIDs = [int( arg ) for arg in sys.argv[1:]]
from DIRAC.TransformationSystem.Agent.Tra... | avedaee/DIRAC | TransformationSystem/scripts/dirac-transformation-remove-output.py | Python | gpl-3.0 | 1,370 | [
"DIRAC"
] | a8730044b55f46199186b1fe204fce9eca34f7f272583ca64f5c028d2c41443d |
#Author: Kwasi Mensah (kmensah@andrew.cmu.edu)
#Date: 7/25/2005
import direct.directbase.DirectStart
from panda3d.core import Filename,Buffer,Shader
from panda3d.core import PandaNode,NodePath
from panda3d.core import ColorBlendAttrib
from panda3d.core import AmbientLight,DirectionalLight
from panda3d.core import Text... | toontownfunserver/Panda3D-1.9.0 | samples/Glow-Filter/Tut-Glow-Advanced.py | Python | bsd-3-clause | 5,837 | [
"Gaussian"
] | 2a826265f19d8eb688b5b04b40b4a0309da98ccbaa05e7d7886d9bc4c28fbc05 |
# coding: utf-8
# In[1]:
import numpy as np
import networkx as nx
import som_functions as som
import math
import sklearn.metrics as met
import sklearn.manifold as man
from time import time
# In[48]:
##GHSOM algorithm
#G: graph
#lam: lambda -- the number of epochs to train before assessing erro... | DavidMcDonald1993/ghsom | GHSOM.py | Python | gpl-2.0 | 15,030 | [
"NEURON",
"VisIt"
] | d43b8a9bbe9fe9e3207ef72765f704c8cc4289a6dd32669e549927b7225573f6 |
# -*- coding: utf-8 -*-
#
# balancedneuron.py
#
# This file is part of NEST.
#
# Copyright (C) 2004 The NEST Initiative
#
# NEST is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 2 of the License,... | mschmidt87/nest-simulator | pynest/examples/balancedneuron.py | Python | gpl-2.0 | 6,751 | [
"NEURON"
] | c46108ebda7a26d2c41b9a765aeef647f205aadc035c5ac398010f544856e372 |
# Name: Maud Ottenheijm
# Student nr: 10641785
# This file contains code for writing csv to json format. Takes input from InternetUsersPer100.csv, outputs in
# data.json. Part of D3 Datamaps assignment week 5, Data Processing.
# bounds for range
range_1 = 2000
range_2 = 4000
range_3 = 6000
range_4 = 8000
range_5 = 1... | MaudOtten/programmeerproject | WomenInScience/data/trial_data_files/csvreader.py | Python | unlicense | 9,175 | [
"BWA"
] | 4f957b7e516b056c4b58801ee186101e414419e65624b3190cda37401939c27a |
#import turbulence.turbulence
from .turbulence import *
import turbulence.vonkarman
import turbulence.gaussian
| antiface/turbulence | turbulence/__init__.py | Python | bsd-2-clause | 111 | [
"Gaussian"
] | 103f395aa56db1e89b5e0699204c3682368b4bb22934b49484f6c39ae68ffdff |
# Copyright 2012-2014 Brian May
#
# This file is part of python-tldap.
#
# python-tldap is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.... | brianmay/python-tldap-debian | tldap/methods/ad.py | Python | gpl-3.0 | 2,688 | [
"Brian"
] | c179fcc519fbb564a617e315baee5a1e5082bd5ab5ae1bf1e463f5b1c7b7e7b1 |
# mako/_ast_util.py
# Copyright (C) 2006-2011 the Mako authors and contributors <see AUTHORS file>
#
# This module is part of Mako and is released under
# the MIT License: http://www.opensource.org/licenses/mit-license.php
"""
ast
~~~
The `ast` module helps Python applications to process trees of the Pyth... | OndinaHQ/Tracker | mako/_ast_util.py | Python | gpl-3.0 | 25,621 | [
"VisIt"
] | e910312eb10898b134d4987de59e52cdb2710a8db4dad7e7cd5bf67800b53fa0 |
"""
climatology3Spark.py
Compute a multi-epoch (multi-day) climatology from daily SST Level-3 grids.
Simple code to be run on Spark cluster, or using multi-core parallelism on single machine.
"""
import sys, os, urlparse, urllib, re, time
import numpy as N
import matplotlib
matplotlib.use('Agg')
import matplotlib.p... | dataplumber/nexus | climatology/clim/climatology3Spark.py | Python | apache-2.0 | 19,840 | [
"Gaussian",
"NetCDF"
] | 095b50c0467c27d5ceea5cc6466dd4a8a83f872352c5642cc0cfd975bf42a792 |
# -*- Mode: python; tab-width: 4; indent-tabs-mode:nil; coding:utf-8 -*-
# vim: tabstop=4 expandtab shiftwidth=4 softtabstop=4
#
# PMDA
# Copyright (c) 2019 The MDAnalysis Development Team and contributors
# (see the file AUTHORS for the full list of names)
#
# Released under the GNU Public Licence, v2 or any higher ve... | MDAnalysis/pmda | pmda/density.py | Python | gpl-2.0 | 14,957 | [
"Gromacs",
"MDAnalysis",
"PyMOL",
"VMD"
] | 95a89543b3b098d81d3dae3de4773f08942d00435081abb814146e83fc506ab7 |
#make print in python 2, 3 compatible
from __future__ import print_function
import numpy as np
import pyedda as edda
#Distribution modeler
dm = edda.DistributionModeler(2)
dummy_data = np.random.rand(100)
dm.computeGMM(dummy_data,2,0)
dm.computeHistogram(dummy_data,32,1)
dm.printDistr()
r1,r2,r3,r4 = dm.ge... | subhashis/edda | pyEdda/test.py | Python | mit | 2,233 | [
"Gaussian"
] | 72eefa5037f94680cff4ad5a62bc33c6348ce31e6d072169833147207f50edd1 |
# -*- Mode: python; tab-width: 4; indent-tabs-mode:nil; coding:utf-8 -*-
# vim: tabstop=4 expandtab shiftwidth=4 softtabstop=4 fileencoding=utf-8
#
# MDAnalysis --- https://www.mdanalysis.org
# Copyright (c) 2006-2017 The MDAnalysis Development Team and contributors
# (see the file AUTHORS for the full list of names)
#... | MDAnalysis/mdanalysis | testsuite/MDAnalysisTests/coordinates/test_pdb.py | Python | gpl-2.0 | 46,473 | [
"MDAnalysis"
] | 65655960665b75d4fa765ad3160d8e1b93cc0cd2c5ec324f44a7be35f436c73d |
from django.core.urlresolvers import reverse
from django.utils.html import strip_tags
from selenium.webdriver.firefox.webdriver import WebDriver
from selenium.common.exceptions import NoSuchElementException
import django.test
import re, os, time
import tao.datasets as datasets
#from tao.models import DataSetProperty... | IntersectAustralia/asvo-tao | web/tao/deployment_tests/ithelper.py | Python | gpl-3.0 | 18,904 | [
"VisIt"
] | b9dc2533a15ff4ab7a98abcd3655b12257bb4f2d72d9a45a1780e8661ac3e5d4 |
# -*- coding: utf-8 -*-
import os
import pygame
import random
import classes.board
import classes.extras as ex
import classes.game_driver as gd
import classes.level_controller as lc
import classes.drw.splash
import classes.drw.fraction
class Board(gd.BoardGame):
def __init__(self, mainloop, speaker, config, scr... | imiolek-ireneusz/eduActiv8 | game_boards/game025.py | Python | gpl-3.0 | 39,742 | [
"Elk",
"Jaguar",
"MOOSE"
] | d308a8584569ff4542c0662ec19acbdb9a831990e5265ab42b5a1f884bcb4ae2 |
import ast
from astmonkey import visitors, transformers
def parseprint(code, filename="<string>", mode="exec", **kwargs):
"""Parse some code from a string and pretty-print it."""
node = ast.parse(code, mode=mode) # An ode to the code
print(ast.dump(node, **kwargs))
source = """
l = k = [1,2,3]
i = a = 0
while i <... | librallu/RICM4Projet | parser/test.py | Python | gpl-3.0 | 532 | [
"VisIt"
] | 7f9000ff27075551b7a3c79fac796b19d775710040f27504e7bad92ba8fc4ff8 |
#!/usr/bin/env python
#-*- coding: utf-8 -*-
import sys, getopt, re, os
try:
from splinter import Browser
except:
print "Please install Splinter: http://splinter.readthedocs.org/en/latest/install.html"
sys.exit();
import getpass
from splinter.request_handler.status_code import HttpResponseError
def main(argv):
em... | skladsec/facebookFriendSaver | facebookFriendSaver.py | Python | isc | 3,504 | [
"VisIt"
] | 0073cbdd70e2422dde6e3d83598736c082a25399fd4373b0a492273d4a2e2464 |
""" This is the guy that actually modifies the content of the CS
"""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
import zlib
import difflib
import six
from diraccfg import CFG
from DIRAC.Core.Utilities import List, Time
from DIRAC.ConfigurationSystem.Cl... | yujikato/DIRAC | src/DIRAC/ConfigurationSystem/private/Modificator.py | Python | gpl-3.0 | 9,707 | [
"DIRAC"
] | 199e01fcfa13aee71ae753657a388eb7c74fca7a474d032d286556a9ef1d763c |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
########################################################################
# $HeadURL$
# File : dirac-distribution
# Author : Adria Casajus
########################################################################
"""
Create tarballs for a given DIRAC release
"""
__RCSID... | avedaee/DIRAC | Core/scripts/dirac-distribution.py | Python | gpl-3.0 | 16,448 | [
"DIRAC"
] | 42628edaa05380ee5dfa53d0545e3391962503c142e3a596e55213c8bd311afc |
# -*- coding: utf-8 -*-
"""
Created on Thu Jun 9 15:52:38 2016
@author: nebula
"""
import os
import swc2vtk
from tqdm import tqdm
cellname_list = [
'200000',
'300000',
'301000',
]
stoptime = 1000.0
datastep = 0.25
nstep = int(stoptime / datastep)
for cellname in cellname_list:
vtkfile_base = ... | DaisukeMiyamoto/swc2vtk | examples/test_simulation.py | Python | apache-2.0 | 926 | [
"VTK"
] | e94fa624bdc9c26b617870a3261abccb766c0a7c0d8546084eed9a26c87fd202 |
####################################################################
# This example illustrates modelling of presynaptic plasticity involving
# Ca influx to 3 boutons, each with a pool of presnaptic vesicles, and
# reactions leading to a buildup of Ca and depletion of vesicles during
# synaptic release. The neurotrans... | BhallaLab/moose-examples | tutorials/Rdesigneur/ex11.1_presyn_dend.py | Python | gpl-2.0 | 2,708 | [
"MOOSE"
] | d2d0cb5f5c4e1fd348fb2f0954d056379700c0754ee3f2d3eeb144c0fdbe5b39 |
#!/usr/bin/env python
# Copyright 2015 The Kubernetes Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by appli... | justinsb/kubernetes | cluster/juju/layers/kubernetes-worker/reactive/kubernetes_worker.py | Python | apache-2.0 | 55,860 | [
"CDK"
] | 22b9530b90773d81f796ce58a8a1e1c50c219323b749c3d486a01766b1eb4743 |
#!/usr/bin/python
# wpa-shoot
#WPAShoot Adalah Tools Untuk Audit Keamanan Jaringan Wireless Yang Berbasis aircrack-ng suite
#Jika Anda Ingin Mengedit Source Code Tolong Sertakan Nama Code Writernya.
#
#Version: 1.0 Beta
#Code Writer: HardGhost
#Web Page : Hardghost-sec.blogspot.com
#
#Jika Terjadi Error Pada File WPASh... | hardghost07/wpa-shoot | WPAShot.py | Python | gpl-3.0 | 7,892 | [
"VisIt"
] | 3d9e7f7373d9b2f3d30b3e6c784716b3556383eaf08bf3f299117b7c3f5f0c63 |
from frappe import _
def get_data():
return [
{
"label": _("Documents"),
"icon": "icon-star",
"items": [
{
"type": "doctype",
"name": "Lead",
"description": _("Database of potential customers."),
},
{
"type": "doctype",
"name": "Customer",
"description": _("Custome... | sheafferusa/erpnext | erpnext/config/crm.py | Python | agpl-3.0 | 3,225 | [
"VisIt"
] | a6804967360ad3b99ed6207adcbb2f6cdbe5b932bc907e4c78d42769586a3fd7 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
from pymatgen.analysis.magnetism.analyzer import *
| fraricci/pymatgen | pymatgen/analysis/magnetism/__init__.py | Python | mit | 161 | [
"pymatgen"
] | e5544e10b55dd2ec03ac8fd6b08b17c958fac15b0c030b89ad2b035e2aba1313 |
import statsmodels.api as sm
import mdtraj as md
import simtk.unit as u
code = "benzene"
ff_name = "amber99sbildn"
water_name = 'tip3p'
which_forcefield = "%s.xml" % ff_name
which_water = '%s.xml' % water_name
out_pdb_filename = "./water/box.pdb"
temperature = 1600.0 * u.kelvin
dcd_filename = "./water/%s_%s_%s_%s.... | kyleabeauchamp/T4Binding | code/benzene_box_analyze.py | Python | gpl-2.0 | 808 | [
"MDTraj"
] | a12cc54ac8c8ef1c1d3ac80fb68cdbc4fa6123f909a7e5fc7a28420c25f9d6c8 |
##############################################################################
# adaptiveMD: A Python Framework to Run Adaptive Molecular Dynamics (MD)
# Simulations on HPC Resources
# Copyright 2017 FU Berlin and the Authors
#
# Authors: Jan-Hendrik Prinz
# Contributors:
#
# `adaptiveMD` is free software: ... | thempel/adaptivemd | adaptivemd/scheduler.py | Python | lgpl-2.1 | 9,942 | [
"MDTraj"
] | 28f1e335e45d270a381ebf27f2841db3f5397d64ffd86fea35d0e86a12950423 |
#!/usr/bin/env python
"""
This script prepares/copies the required settings files and directories to the tombo scratch
filesystem and creates a job script before submitting it to the job que
Author: Tom Close (tclose@oist.jp)
Created: 20/8/2013
"""
#Name of the script for the output directory and submitted mpi jo... | wvangeit/NeuroFitter | scripts/neurofitter.py | Python | gpl-2.0 | 2,760 | [
"NEURON"
] | 2a1cfc48c44f8ceced76ee5d6bce40e297dae8b1934136de97d14f18248415c3 |
# Licensed under a 3-clause BSD style license - see LICENSE.rst
"""
This module contains simple functions for model selection.
"""
from __future__ import (absolute_import, division, print_function,
unicode_literals)
import numpy as np
__all__ = ['bayesian_info_criterion', 'bayesian_info_crite... | joergdietrich/astropy | astropy/stats/info_theory.py | Python | bsd-3-clause | 14,954 | [
"Gaussian"
] | 03689bc911ceb90446b43da32e6721927fd346d983e47757f4f5078467b29286 |
"""setuptools.command.bdist_egg
Build .egg distributions"""
from distutils.errors import DistutilsSetupError
from distutils.dir_util import remove_tree, mkpath
from distutils import log
from types import CodeType
import sys
import os
import re
import textwrap
import marshal
from setuptools.extern import six
from pk... | ARL-UTEP-OC/emubox | workshop-creator/python27-64bit-gtk3/Lib/site-packages/setuptools/command/bdist_egg.py | Python | gpl-2.0 | 18,185 | [
"VisIt"
] | 450f61f019925695ca250493de2fdbfec9b4f7767e6825db7cc04433622b23e4 |
# Copyright (c) 2014, Alan Saul
# Licensed under the BSD 3-clause license (see LICENSE.txt)
import GPy
import numpy as np
from GPy.util import datasets
try:
import matplotlib.pyplot as plt
except:
pass
def student_t_approx(optimize=True, plot=True):
"""
Example of regressing with a student t likelihoo... | strongh/GPy | GPy/examples/non_gaussian.py | Python | bsd-3-clause | 10,661 | [
"Gaussian"
] | 227fad96f93110bd5d805f4df1d4e18e592e52ce743c9590139f2fd01440722d |
# -*- coding: utf-8 -*-
import os, datetime
from django.contrib import messages
from django.utils.translation import ugettext_lazy as _
from django.shortcuts import render_to_response, redirect, HttpResponse, Http404
from django.template import RequestContext
from django.contrib.auth import authenticate, logout, login... | aazhbd/medical_info01 | patient/views.py | Python | bsd-3-clause | 24,670 | [
"VisIt"
] | 014c81b4c43701d2ca71469758b2cb930e24880008631e5fde8694b975ad5649 |
#!/usr/bin/env python
try:
import gi
gi.require_version('NumCosmo', '1.0')
gi.require_version('NumCosmoMath', '1.0')
except:
pass
from math import *
import matplotlib.pyplot as plt
from gi.repository import GObject
from gi.repository import NumCosmo as Nc
from gi.repository import NumCosmoMath as Ncm
#
# In... | NumCosmo/NumCosmo | examples/example_ca_sampling.py | Python | gpl-3.0 | 5,324 | [
"Gaussian"
] | a31786018575aa73cc795d76a315a2e4ff3cfa8c223cc4c94a5ca471abbab315 |
"""
Single page performance tests for LMS.
"""
from bok_choy.web_app_test import with_cache
from common.test.acceptance.pages.lms.auto_auth import AutoAuthPage
from common.test.acceptance.pages.lms.courseware import CoursewarePage
from common.test.acceptance.pages.lms.dashboard import DashboardPage
from common.test.acc... | louyihua/edx-platform | common/test/acceptance/performance/test_lms_performance.py | Python | agpl-3.0 | 4,552 | [
"VisIt"
] | 325bdab47dd413994a4f7a06d7128a0440c1c0c51ae41a7ce8993c545d483afd |
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