text stringlengths 12 1.05M | repo_name stringlengths 5 86 | path stringlengths 4 191 | language stringclasses 1
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values | size int32 12 1.05M | keyword listlengths 1 23 | text_hash stringlengths 64 64 |
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Testopus = "./core/octopus/layouts/octopusLayout.json" | TheGentlemanOctopus/thegentlemanoctopus | octopus_code/core/tests/utils.py | Python | gpl-3.0 | 54 | [
"Octopus"
] | 16813871987f3526968b68760de26564be10bf564895f0c0e2f7e96c3bc57e3d |
# import necessary python packages
import numpy as np
import pandas as pd
import datetime
import os
from scipy.ndimage.filters import maximum_filter
from scipy.ndimage.morphology import generate_binary_structure, binary_erosion
from collections import Counter
from matplotlib import pyplot as plt
from pymongo import Mo... | willettk/rgz-analysis | python/rgz.py | Python | mit | 28,157 | [
"Galaxy",
"Gaussian"
] | 82e029fb514a2ad85f2f0d8d55ed0148a244b2e64d0eb3a778b14d0456852364 |
#!/usr/bin/env python
## Copyright (C) 2011-2012, 2014 The PISM Authors
## script to generate figure: results from SeaRISE experiments
## usage: if UAFX_G_D3_C?_??.nc are result NetCDF files then do
## $ slr_show.py -m UAFX
# try different netCDF modules
try:
from netCDF4 import Dataset as CDF
except:
pri... | talbrecht/pism_pik06 | util/slr_show.py | Python | gpl-3.0 | 3,713 | [
"NetCDF"
] | 924e6b2c9db2d617cbf0c28e8b267bd34694a5687b22948192de3550ae1d9f78 |
# Copyright 2015 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | alistairlow/tensorflow | tensorflow/python/keras/_impl/keras/layers/noise.py | Python | apache-2.0 | 5,871 | [
"Gaussian"
] | 93a6319c4203f92ab9e53a8974ee152eab2681f553a10ccfe3bbdadbe79b72a8 |
# -*- coding: utf-8 -*-
##############################################################################
#
# OpenERP, Open Source Management Solution
# Copyright (C) 2004-today OpenERP SA (<http://www.openerp.com>)
#
# This program is free software: you can redistribute it and/or modify
# it under the terms o... | chjw8016/GreenOdoo7-haibao | openerp/addons/project/project.py | Python | mit | 74,113 | [
"VisIt"
] | 664fa61a0fe787aa69284274d449d231dcc72dd01d19b5e10065119f8b12930b |
# -*- coding: utf-8 -*-
"""
Created on Thu Jul 14 14:05:09 2016
@author: cjs14
functions based on nearest neighbour calculations
"""
import math
import pandas as pd
import numpy as np
from scipy.spatial import cKDTree
from collections import Counter
from IPython.core.display import clear_output
import matplotlib.pat... | chrisjsewell/ipymd | ipymd/atom_analysis/nearest_neighbour.py | Python | gpl-3.0 | 24,578 | [
"CRYSTAL",
"OVITO"
] | 304acd63687aa6b197f1601885726b7b8f4f2ea139f244cc51eedbee9f473654 |
# Copyright (c) 2012-2014, GPy authors (see AUTHORS.txt).
# Licensed under the BSD 3-clause license (see LICENSE.txt)
"""
Gaussian Processes regression examples
"""
MPL_AVAILABLE = True
try:
import matplotlib.pyplot as plt
except ImportError:
MPL_AVAILABLE = False
import numpy as np
import GPy
def olympic_m... | SheffieldML/GPy | GPy/examples/regression.py | Python | bsd-3-clause | 24,334 | [
"Gaussian"
] | dd576bc35c83b53dd4d49812b5252fbf78e4022c264ca7efd9941544eb89f893 |
from cellprofiler.gui.help import USING_METADATA_HELP_REF, USING_METADATA_GROUPING_HELP_REF, LOADING_IMAGE_SEQ_HELP_REF
TM_OVERLAP = 'Overlap'
TM_DISTANCE = 'Distance'
TM_MEASUREMENTS = 'Measurements'
TM_LAP = "LAP"
TM_ALL = [TM_OVERLAP, TM_DISTANCE, TM_MEASUREMENTS,TM_LAP]
LT_NONE = 0
LT_PHASE_1 = 1
LT_SPLIT = 2
LT_... | LeeKamentsky/CellProfiler | cellprofiler/modules/trackobjects.py | Python | gpl-2.0 | 145,080 | [
"Gaussian"
] | adf441f00e52c63777acb655e40ba763e344741ffe2d38921bb3f6a327fa2bd4 |
"""
Acceptance Tests for Course Information
"""
from common.test.acceptance.pages.studio.course_info import CourseUpdatesPage
from common.test.acceptance.tests.studio.base_studio_test import StudioCourseTest
from ...pages.studio.auto_auth import AutoAuthPage
from ...pages.studio.index import DashboardPage
class User... | TheMOOCAgency/edx-platform | common/test/acceptance/tests/studio/test_studio_course_info.py | Python | agpl-3.0 | 6,771 | [
"VisIt"
] | 4b1b5bd062f4b9dd18dc779e5846669a89a9bc08d37b68a85e3e069066d10ba4 |
import os
# remove any visible GPU, force tensorflow to run only on CPU
os.environ['CUDA_VISIBLE_DEVICES'] = ""
import tensorflow as tf
from multiprocessing import cpu_count
from six.moves import cPickle
from numbers import Number
from collections import defaultdict, OrderedDict
from .visualization import *
_path = ... | trungnt13/BAY2-uef17 | data/__init__.py | Python | gpl-3.0 | 2,750 | [
"Galaxy"
] | 8c6e75085ab2921a72786b7d585a2e30b27f48c523c839be77d7b23ae8d6372f |
# -*- coding: utf-8 -*-
from collections import namedtuple
Grant = namedtuple('Grant', 'url, grantee, location, title, type, total_support, '
'year, description, break_down, urls')
GRANTS = [
Grant(
u'dream-yard',
u'DreamYard Project',
u'United States',
... | glogiotatidis/bedrock | bedrock/grants/grants_db.py | Python | mpl-2.0 | 39,061 | [
"ORCA"
] | 4f23c622e5ec5c7b8a7afa3176da1c16385a946b13ee18b2778273d72762d0a8 |
#!/usr/bin/env python
from optparse import OptionParser, OptionGroup
import re
import tempfile
from bs_align import output
from bs_align.bs_pair_end import *
from bs_align.bs_single_end import *
from bs_align.bs_rrbs import *
import os
#import re
#from bs_utils.utils import *
if __name__ == '__main__':
parser =... | BioInfoTools/BSVF | bin/BSseeker2/bs_seeker2-align.py | Python | lgpl-3.0 | 22,609 | [
"Bowtie"
] | b63351d00892fd69582836c51a21330f1155f069b5dde1a17ceef3475952bdbf |
# -*- coding: utf-8 -*-
# Copyright 2012 splinter authors. All rights reserved.
# Use of this source code is governed by a BSD-style
# license that can be found in the LICENSE file.
import time
class CookiesTest:
def test_create_and_access_a_cookie(self):
"""Should be able to create and access a cookie""... | cobrateam/splinter | tests/cookies.py | Python | bsd-3-clause | 3,771 | [
"VisIt"
] | 258664378e01a1b346e03c721e75a37761b3592a8642e60108dc4b2098e9817d |
# -*- coding: iso-8859-1 -*-
# -----------------------------------------------------------------------------
# sphinxext.py - Kaa specific extensions for Sphinx
# -----------------------------------------------------------------------------
# Copyright 2009-2012 Dirk Meyer, Jason Tackaberry
#
# Please see the file AUTH... | freevo/kaa-base | src/distribution/sphinxext.py | Python | lgpl-2.1 | 20,688 | [
"VisIt"
] | a314d42ab4223ab3496434ae8197baeb1b02fcbc57a89bd737fc3426fe6e2a1c |
import numpy as np
from scipy import ndimage as ndi
from scipy import stats
from ..util import img_as_float, pad
from ..feature import peak_local_max
from ..feature.util import _prepare_grayscale_input_2D
from ..feature.corner_cy import _corner_fast
from ._hessian_det_appx import _hessian_matrix_det
from ..transform i... | jwiggins/scikit-image | skimage/feature/corner.py | Python | bsd-3-clause | 27,165 | [
"Gaussian"
] | 2f98dff357d7d2eb15bb607829cfa1a857ad5103fba3596e8eed4c35959d13c4 |
import argparse
from rdkit import Chem
from rdkit.Chem.rdmolfiles import SmilesWriter
parser = argparse.ArgumentParser()
parser.add_argument('inputfile', help="sdf filename for convert to smiles")
args = parser.parse_args()
sdf = Chem.SDMolSupplier( args.inputfile )
writer = SmilesWriter("converted.smi")
for mol in s... | ptosco/rdkit | Contrib/Fastcluster/testdata/sdf2smi.py | Python | bsd-3-clause | 364 | [
"RDKit"
] | b9ab22ecd834e679fbdf9b39df67fb74407abab62b9eca250982cce068c7e6d9 |
#!/usr/bin/env python
##
from wrfpy.config import config
import csv
import os
import astral
from netCDF4 import Dataset
from netCDF4 import date2num
import numpy as np
import bisect
from datetime import datetime
import glob
from pathos.multiprocessing import ProcessPool as Pool
class readObsTemperature(config):
... | rvanharen/wrfpy | wrfpy/readObsTemperature.py | Python | apache-2.0 | 6,814 | [
"NetCDF"
] | 66bf4060b938a9c896b91ccdbe3478c163c1c524c1abc1017b30a3976b0e539b |
#!/usr/bin/env python3
# Copyright (c) 2015-2018 by the parties listed in the AUTHORS file.
# All rights reserved. Use of this source code is governed by
# a BSD-style license that can be found in the LICENSE file.
import copy
from datetime import datetime
import os
import pickle
import re
import sys
import tracebac... | tskisner/pytoast | pipelines/toast_ground_sim.py | Python | bsd-2-clause | 59,891 | [
"Gaussian"
] | c35b95d58cc03a8cc3bc330691e52345c82337c615479dae36f271999685d7e7 |
#!/usr/bin/env python
# Script to convert Tinker PDB atom namings to Amber
# Note this won't change coordinates/atom ordering. To
# get atom ordering consistent with an Amber prmtop, the
# resulting PDB should be read into Leap & re-saved.
# Usage: tinker_pdb_to_amber.py input_pdb.pdb output_pdb.pdb
import mdtraj ... | rtb1c13/scripts | General/tinker_pdb_to_amber.py | Python | gpl-2.0 | 1,237 | [
"Amber",
"MDTraj",
"TINKER"
] | 8b07ebf39d7f9ca48bdb2de7ff2fcb75e09675fd12b9b6ae160d9d039b339f5d |
"""This module defines an ASE interface to ABINIT.
http://www.abinit.org/
"""
import os
from glob import glob
from os.path import join, isfile, islink
import numpy as np
from ase.data import atomic_numbers
from ase.units import Bohr, Hartree, fs
from ase.data import chemical_symbols
from ase.io.abinit import read_a... | suttond/MODOI | ase/calculators/abinit.py | Python | lgpl-3.0 | 24,084 | [
"ABINIT",
"ASE",
"DIRAC",
"Gaussian"
] | 67d622c2a4b809e37ac614b268f001d7ee57fb2ee6a4707497948906b2253297 |
"""K-means clustering"""
# Authors: Gael Varoquaux <gael.varoquaux@normalesup.org>
# Thomas Rueckstiess <ruecksti@in.tum.de>
# James Bergstra <james.bergstra@umontreal.ca>
# Jan Schlueter <scikit-learn@jan-schlueter.de>
# Nelle Varoquaux
# Peter Prettenhofer <peter.prettenh... | mrshu/scikit-learn | sklearn/cluster/k_means_.py | Python | bsd-3-clause | 45,375 | [
"Gaussian"
] | 2469bb4b75fa145797071ee28c3ab90b076b4c9d1956d6253c5edcfb934839d9 |
# $HeadURL$
"""
Encoding and decoding for dirac, Ids:
i -> int
I -> long
f -> float
b -> bool
s -> string
z -> datetime
n -> none
l -> list
t -> tuple
d -> dictionary
"""
__RCSID__ = "$Id$"
import types
import datetime
import os
import inspect
import traceback
from pprint import pprint
# Setting this envi... | andresailer/DIRAC | Core/Utilities/DEncode.py | Python | gpl-3.0 | 9,819 | [
"DIRAC"
] | 29bedb2bc060ee65787fb7160f197a234f568d4acc4cb1bc164a9830a8b3273b |
#!/usr/bin/env python
# Script which test the different filtering thresholds per barcode
# Returns per barcode the detected species which match the criteria
import sys
import os
### Get the OTU abundance from the file (This is per barcode)
def GetOTUabundance(statFile, pOTU):
# Local variables
f = open(statFile)
... | RIKILT/CITESspeciesDetect | CheckCriteriaBlastSingleSample.py | Python | bsd-3-clause | 5,204 | [
"BLAST"
] | 4c6ddc239dc6d7cdc7ff29cd4c6fd7d2deeb5917c82aed06168607fafcc5cec8 |
#!/usr/bin/env python2.5
#
# Copyright 2009 the Melange authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applic... | SRabbelier/Melange | app/soc/modules/gci/views/models/program.py | Python | apache-2.0 | 40,076 | [
"VisIt"
] | 536b7507ef66a31659e56d7b9f468308c8647f0c5ff3d75d8cdece9001018eab |
#!/usr/bin/env python
#
# $File: importMS.py $
#
# This file is part of simuPOP, a forward-time population genetics
# simulation environment. Please visit http://simupop.sourceforge.net
# for details.
#
# Copyright (C) 2004 - 2010 Bo Peng (bpeng@mdanderson.org)
#
# This program is free software: you can redistribute i... | BoPeng/simuPOP | docs/importMS.py | Python | gpl-2.0 | 2,127 | [
"VisIt"
] | 86fd23d9970a4741cf9fda8f7e7c29feb1d1572687c8bdaea7a97a7ecb1c8e74 |
#!/usr/bin/env python
# Author: Andrew Jewett (jewett.aij at g mail)
# License: MIT License (See LICENSE.md)
# Copyright (c) 2013
"""
Reorder the atoms in the Angles section of a data file to make sure that
atoms have a "canonical order" (for example the first atom has a lower
id than the last atom, for ang... | jewettaij/moltemplate | moltemplate/nbody_reorder_atoms.py | Python | mit | 4,360 | [
"LAMMPS"
] | d2c772e45cf701717312a6202eef1657762f0f3013a61c65d501f8670f97bfb0 |
from wtforms import validators, FormField, SelectField
from wtforms_alchemy import ModelForm, ModelFieldList
from models import ShoppingItem, Visit, ShoppingCategory
class CategoryForm(ModelForm):
class Meta:
model = ShoppingCategory
include = ['id']
'''field_args = {
'id': {
... | jlutz777/FreeStore | forms/checkout.py | Python | mit | 1,609 | [
"VisIt"
] | bd703ee3034809aecd5fd9e7e5e055388cc120e3678f27bdde2c7b5287349d3f |
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2000-2006 Donald N. Allingham
# Copyright (C) 2008 Brian G. Matherly
# Copyright (C) 2010 Jakim Friant
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as publi... | pmghalvorsen/gramps_branch | gramps/plugins/gramplet/soundgen.py | Python | gpl-2.0 | 3,732 | [
"Brian"
] | ab7ed8e3807a4acd5a54ccd408eab755e2384fab8772282a5044070eef2d5b3d |
import numpy as np
import theano
import theano.tensor as T
import unittest
import tempfile
from numpy.testing import assert_equal, assert_array_equal, assert_array_almost_equal
from nose.tools import assert_true
from smartlearner import views, stopping_criteria, Trainer, tasks
from smartlearner.direction_modifiers im... | ASalvail/smartlearner | tests/direction_modifiers/test_gradient_noise.py | Python | bsd-3-clause | 6,530 | [
"Gaussian"
] | 9530be10bb7fd2c8a93f460c4dbfc0c1f28234bdd371ea3b1819b235a86fcce6 |
# -*- coding: utf-8 -*-
"""
pyClanSphere.utils.forms
~~~~~~~~~~~~~~~~~~~~~~~~
This module implements a sophisticated form validation and rendering
system that is based on diva with concepts from django newforms and
wtforms incorporated.
It can validate nested structures and works in both ways.... | jokey2k/pyClanSphere | pyClanSphere/utils/forms.py | Python | bsd-3-clause | 65,405 | [
"VisIt"
] | 94a8eac6247326c3b8ef314386c8b190386cbf2a0556fab51b57ca47f946395e |
# -*- coding: utf-8 -*-
# PEP8:OK, LINT:OK, PY3:OK
#############################################################################
## This file may be used under the terms of the GNU General Public
## License version 2.0 or 3.0 as published by the Free Software Foundation
## and appearing in the file LICENSE.GPL includ... | juancarlospaco/vagrant | main.py | Python | gpl-3.0 | 23,005 | [
"VisIt"
] | 50707446f6ad223fca15e2a38386494efc65daa574c106be046ae9bba9f473ff |
################################################################################
# Copyright (C) 2013-2014 Jaakko Luttinen
#
# This file is licensed under the MIT License.
################################################################################
import numpy as np
import functools
from bayespy.utils import mi... | bayespy/bayespy | bayespy/inference/vmp/nodes/node.py | Python | mit | 47,028 | [
"Gaussian"
] | 23ecd969aeeb3ea95896f218f4adc69034a217238d070247e0ae9ff10e0efc55 |
# Licensed under a 3-clause BSD style license - see LICENSE.rst
"""
Utilities for statistical operations
"""
from __future__ import absolute_import, division, print_function
import numpy as np
import scipy.stats as stats
def norm(x, mu, sigma=1.0):
""" Scipy norm function """
return stats.norm(loc=mu, scale=s... | kadrlica/dmsky | dmsky/utils/stat_funcs.py | Python | mit | 2,830 | [
"Gaussian"
] | 329c0198001981ddd00a1685ac037cdf76bb296fa8680ffb605ebaeb92b2ca7c |
#!/usr/bin/python
import os, re
import plmd
class Setup (plmd.PLMD_module):
def __init__(self, config):
# Load the config file
self.config = plmd.PLMD_Config( config )
# Confirm with user
self.printStage("Step 1: Starting up PLMD. Submission file parameters:")
... | MathiasGruber/plmd | src/plmd/caseSubmit.py | Python | gpl-2.0 | 17,406 | [
"ADF",
"Amber"
] | b3205fb87d143cf5777d394babcc38c74c2ff71ebb289f306fd83e80314aa1a5 |
#!/usr/bin/env python
"""
Ben Payne
ben.is.located@gmail.com
Yoga graph
Use:
This work is licensed under the Creative Commons Attribution-ShareAlike 4.0 International License.
To view a copy of this license, visit http://creativecommons.org/licenses/by-sa/4.0/.
"""
import networkx as nx # format for directed graph... | bhpayne/yoga_graph | src/generate_dot.py | Python | gpl-2.0 | 716 | [
"VisIt"
] | a86239b4a29151e7139a090f3779d83518b95fc788334d36bf8f7e4f479144b0 |
"""Test template support in VTK-Python
VTK-python decides which template specializations
to wrap according to which ones are used in typedefs
and which ones appear as superclasses of other classes.
In addition, the wrappers are hard-coded to wrap the
vtkDenseArray and vtkSparseArray classes over a broad
range of types... | daviddoria/PointGraphsPhase1 | Common/Testing/Python/TestTemplates.py | Python | bsd-3-clause | 4,339 | [
"VTK"
] | 8eb473105aabdade8edb6288856936af230ac9e06b392565286e178d5d35a7fb |
from paraview.simple import *
import tonic
from tonic import paraview as pv
dataset_destination_path = '/tmp/spherical'
# Initial ParaView scene setup
Cone()
Show()
view = Render()
# Choose data location
dh = tonic.DataHandler(dataset_destination_path)
camera = pv.create_spherical_camera(view, dh, range(0, 360, 30)... | Kitware/tonic-data-generator | scripts/paraview/samples/camera-spherical.py | Python | bsd-3-clause | 603 | [
"ParaView"
] | 049e9c1cb5c54f71fb73bd7b0f34402ad2815b5567d9ae240b41c0e42cb36a82 |
import os
import sys
from setuptools import setup, find_packages
_here = os.path.dirname(__file__)
f = open(os.path.join(_here, 'README.md'), 'r')
README = f.read()
f.close()
install_requires = ['lxml']
if sys.version_info[0] == 2:
# python2 does not have mock in the standard lib
install_requires.append('moc... | kiarasky/mp.importer | setup.py | Python | mit | 1,078 | [
"Brian"
] | 152a563d826631d9dcb63465daf3e18060859779d7672074021fc7cc4fb1631f |
#!/galaxy/home/mgehrin/hiclib/bin/python
"""
Application to convert AXT file to FASTA file. Reads an AXT file from standard
input and writes a FASTA file to standard out.
usage: %prog < axt_file > fasta_file
"""
__author__ = "Bob Harris (rsharris@bx.psu.edu)"
import sys
import bx.align.axt
def usage(s=None):
mes... | bxlab/HiFive_Paper | Scripts/HiCLib/bx-python-0.7.1/build/scripts-2.7/axt_to_fasta.py | Python | bsd-3-clause | 1,174 | [
"Galaxy"
] | 92bece6951854fc2460bb1dd028e10c1c062f849d11a16600f0496ff48e6e52f |
"""
media (:mod:`skrf.media.media`)
========================================
Media class.
.. autosummary::
:toctree: generated/
Media
DefinedGammaZ0
"""
from numbers import Number
import warnings
import numpy as npy
from numpy import real, imag, ones, any, gradient, array
from scipy import stats
from ... | temmeand/scikit-rf | skrf/media/media.py | Python | bsd-3-clause | 42,952 | [
"Gaussian"
] | 7426433041e8cd53d47966c274ec69f2eba74aab04adb662b913d700a94a8596 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
# Copyright (C) 2015 by Gaik Tamazian
# gaik (dot) tamazian (at) gmail (dot) com
import logging
import subprocess
from itertools import chain
logging.basicConfig()
logger = logging.getLogger(__name__)
class MakeBlastDb(object):
"""
The class implements a wrappe... | gtamazian/Chromosomer | chromosomer/wrapper/blast.py | Python | mit | 2,727 | [
"BLAST"
] | a01e99cf06b7138e671fa731fe7a63e38f8c55382ed3e9b7b9cb2bcd2239a7e7 |
#!/usr/bin/env python
#TOR manager module developed by Marios Kourtesis <name.surname@gmail.com>
import commands
import socket
import time
from multiprocessing import Process
from framework.dependency_management.dependency_resolver import BaseComponent
from framework.lib.general import cprint
class TOR_manager(Base... | DePierre/owtf | framework/http/proxy/tor_manager.py | Python | bsd-3-clause | 5,312 | [
"VisIt"
] | 382aa9c4633ed9c8a8c84dad06b70afc7faa9acd85b68001108d6ee2358cc223 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
# Example of "structured points" dataset
# vtkStructuredPoints is a child class of vtkImageData
import vtk
dx = 0.2
grid = vtk.vtkStructuredPoints()
#grid = vtk.vtkImageData()
grid.SetOrigin(0.1, 0.1, 0.1) # default values
grid.SetSpacing(dx, dx, dx)
grid.SetDimensions... | rboman/progs | classes/sph/sandbox/strpoints.py | Python | apache-2.0 | 1,465 | [
"VTK"
] | e6323577734caf2f01ba47f0ea5ad7910289734fe9e741056debbfc4a827c56a |
import os
import scipy.stats
import numpy
import matplotlib.pylab as pl
import pandas as pd
# program path on this machine
#===================================================================
blastneuron_DIR = "/home/xiaoxiaol/work/src/blastneuron"
PRUNE_SHORT_BRANCH = blastneuron_DIR + "/bin/prune_short_branch"
PRE_... | XiaoxiaoLiu/morphology_analysis | stats_analysis/process_lims_data.py | Python | gpl-3.0 | 4,053 | [
"NEURON"
] | 419107a68dcfaa0efe7dee05662f8f3edd9fe1a3b75ed60b7fee9dcdf778bace |
# Licensed under a 3-clause BSD style license - see LICENSE.rst
"""
This module implements classes (called Fitters) which combine optimization
algorithms (typically from `scipy.optimize`) with statistic functions to perform
fitting. Fitters are implemented as callable classes. In addition to the data
to fit, the ``__c... | DougBurke/astropy | astropy/modeling/fitting.py | Python | bsd-3-clause | 51,488 | [
"Gaussian"
] | a9020ca29ee094296669f63896374d63eb548bff9f7007c4fbe4dbcad7fd4fd0 |
#!/usr/bin/env python
# generate Python Manifest for the OpenEmbedded build system
# (C) 2002-2010 Michael 'Mickey' Lauer <mlauer@vanille-media.de>
# (C) 2007 Jeremy Laine
# licensed under MIT, see COPYING.MIT
import os
import sys
import time
VERSION = "2.6.6"
__author__ = "Michael 'Mickey' Lauer <mlauer@vanille-me... | xifengchuo/openembedded | contrib/python/generate-manifest-2.6.py | Python | mit | 14,802 | [
"VisIt"
] | 0ff9b5dff428e7d56865d823904dd2ea745202112b548919b47f1e052bfc08cb |
#!/usr/bin/env python
__copyright__ = "Copyright 2015, http://radical.rutgers.edu"
__license__ = "MIT"
import sys
import radical.pilot as rp
import radical.utils as ru
dh = ru.DebugHelper ()
CNT = 0
RUNTIME = 10
SLEEP = 1
CORES = 16
UNITS = 1
SCHED = rp.SCHED_DIRECT_SUBMISSION
... | JensTimmerman/radical.pilot | tests/issue_572.py | Python | mit | 5,093 | [
"Gromacs"
] | 1fb757cbc30a63ff101ac8f4803770e1a8f550dac5d01122115808fd206ed71a |
# -*- coding: utf-8 -*-
"""
Visualization tools used without Keras.
Makes performance graphs for training and validating.
"""
import numpy as np
import matplotlib.pyplot as plt
from matplotlib.backends.backend_pdf import PdfPages
class TrainValPlotter:
"""
Class for plotting train/val curves.
Instructio... | ViaFerrata/DL_pipeline_TauAppearance | orcanet/utilities/visualization.py | Python | agpl-3.0 | 13,254 | [
"Gaussian"
] | 7ced705645c8631a79491b20ce1b80428c8ba2c3ec1ff3933dd8bda19178aca7 |
__author__ = 'chris hamm'
#NetworkClient_r9D
#Created: 1/10/2015
#Added functions to parse chunk objects (Has now been decided that these will not be needed)
#Added a command logging system that records what commands has been received and sent to server/controller. These will be displayed after the client shuts down a... | COCS4950G7/COSC4950 | Source/Rainbow/NetworkClient.py | Python | gpl-3.0 | 40,561 | [
"ADF"
] | cb538d13c8adaa4cbd0b429d1663a11dd631429e94caf2421c42042a34cf2100 |
"""
Bistability with NaP
Reference:
Wang X-J (2008)
Attractor network models
In Encyclopedia of Neuroscience, volume 1, pp. 667-679 Edited by Squire LR. Oxford: Academic Press.
@author: Guangyu Robert Yang @ 2017/4
"""
from __future__ import division
from collections import OrderedDict
import random as pyrand # Impo... | xjwanglab/book | BistabilityNaP/BistabilityNaP.py | Python | mit | 6,185 | [
"Brian",
"NEURON"
] | f5a3da6d9cb30d2a2aab6509ae659310ed06b869742c645a1661559d9df33c5c |
import subprocess
import MySQLdb
import os
import shutil
import json
import uuid
from Bio import SeqIO
from Bio.Seq import Seq
from Bio.SeqRecord import SeqRecord
from Bio.Alphabet import generic_protein
from biokbase.workspace.client import Workspace as workspaceService
from GenomeAnnotationAPI.GenomeAnnotationAPIClie... | rsutormin/PangenomeOrthomcl | lib/PangenomeOrthomcl/PangenomeOrthomclBuilder.py | Python | mit | 18,725 | [
"BLAST"
] | 24fdaab50b4a577c22ec715cb2fdfe3de52a045a2e827d3cfeabaaa35c6802fb |
# -*- coding: utf-8 -*-
#
# Copyright (c) 2016, the cclib development team
#
# This file is part of cclib (http://cclib.github.io) and is distributed under
# the terms of the BSD 3-Clause License.
"""A library for parsing and interpreting results from computational chemistry packages.
The goals of cclib are centered ... | Schamnad/cclib | src/cclib/__init__.py | Python | bsd-3-clause | 1,379 | [
"ADF",
"Firefly",
"GAMESS",
"Gaussian",
"Jaguar",
"MOPAC",
"Molpro",
"NWChem",
"ORCA",
"Q-Chem",
"cclib"
] | ca72773fe6abd10ea9455a4e2364a8867320fd0af0b227315d486adf88f396b7 |
import wx
import wx.grid
import wx.lib.scrolledpanel
import os
import os.path
import time
import platform
import multiprocessing
import webbrowser
import datetime
from threading import Thread
from tools import *
class KICPanel(wx.lib.scrolledpanel.ScrolledPanel):
def __init__(self, parent, W, H):
#if (plat... | schenc3/InteractiveROSETTA | InteractiveROSETTA/scripts/kic.py | Python | gpl-2.0 | 83,223 | [
"PyMOL"
] | 3509d990e6c370dab85f8eb0655cf0efeee962c4366607ede4153fb6ede11ba2 |
# coding: utf8
{
'': '',
' Quotas: %(quotas)s x%(quota_amount).2f': ' Quotas: %(quotas)s x%(quota_amount).2f',
' Transaction number: %s': ' Transaction number: %s',
'"update" is an optional expression like "field1=\'newvalue\'". You cannot update or delete the results of a JOIN': '"update" is an optional expression lik... | reingart/gestionlibre | languages/es.py | Python | agpl-3.0 | 34,315 | [
"VisIt"
] | 1821440997573378706936914bea9cdc933593597e1b19d4216e92e81233911f |
"""
depth_connectivity.py
---
Assign bathymetry to a grid based on cell-to-cell connectivity
derived from a high-resolution DEM.
Adapted from Holleman and Stacey, JPO, 2014.
Primary entry point:
edge_depths=edge_connection_depth(g,dem,edge_mask=None,centers='lowest')
see end of file
"""
# Copied from .../research... | rustychris/stompy | stompy/grid/depth_connectivity.py | Python | mit | 15,086 | [
"VisIt"
] | ec9e3782da6578708fb4acb8ccfa3a73aea12690a52dd5713854c4eaaae8b48d |
"""
EvMenu
This implements a full menu system for Evennia. It is considerably
more flexible than the older contrib/menusystem.py and also uses
menu plugin modules.
To start the menu, just import the EvMenu class from this module,
```python
from evennia.utils.evmenu import EvMenu
EvMenu(caller, menu_module_... | TheTypoMaster/evennia | evennia/utils/evmenu.py | Python | bsd-3-clause | 26,765 | [
"VisIt"
] | e397bed5456b739ed3f3904297534afc9081bb86f32b56b9c22ae216e1d134cf |
#!/usr/bin/env python
"""
Copyright (c) 2006-2014 sqlmap developers (http://sqlmap.org/)
See the file 'doc/COPYING' for copying permission
"""
import sys
PYVERSION = sys.version.split()[0]
if PYVERSION >= "3" or PYVERSION < "2.6":
exit("[CRITICAL] incompatible Python version detected ('%s'). For successfully ru... | pwnieexpress/raspberry_pwn | src/pentest/sqlmap/lib/utils/versioncheck.py | Python | gpl-3.0 | 820 | [
"VisIt"
] | 850dae71ff51fb6228775f86c771aa77d0159bd9f054fa1a9230be82b7b98471 |
""" Definition for RHEAS Datasets decorators.
.. module:: datasets.decorators
:synopsis: Definition of the Datasets decorators
.. moduleauthor:: Kostas Andreadis <kandread@jpl.nasa.gov>
"""
from functools import wraps
import tempfile
import shutil
import urllib
from datetime import datetime
from ftplib import FT... | nasa/RHEAS | src/datasets/decorators.py | Python | mit | 6,705 | [
"NetCDF"
] | 1fc7f2a130687ce6696a831499aaff13d3e513004650e292f83e476e775a77b5 |
"""Module to read and write atoms in cif file format.
See http://www.iucr.org/resources/cif/spec/version1.1/cifsyntax for a
description of the file format. STAR extensions as save frames,
global blocks, nested loops and multi-data values are not supported.
"""
import shlex
import re
import numpy as np
from ase.par... | grhawk/ASE | tools/ase/io/cif.py | Python | gpl-2.0 | 12,115 | [
"ASE",
"CRYSTAL"
] | 2187966d86399e9af99d5cb193b4fdde665a86d374cada6d0677d079a8392b1d |
# -*-python-*-
#
# Copyright (C) 2006-2013 The ViewCVS Group. All Rights Reserved.
#
# By using this file, you agree to the terms and conditions set forth in
# the LICENSE.html file which can be found at the top level of the ViewVC
# distribution or at http://viewvc.org/license-1.html.
#
# For more information, visit h... | marcellodesales/svnedge-console | svn-server/lib/viewvc/vcauth/forbidden/__init__.py | Python | agpl-3.0 | 1,602 | [
"VisIt"
] | e522032de63baf71e37601531b3338fb6ac55c1c827db53edb06a4740261c1a7 |
"""
=========================================================
Gaussian Processes regression: basic introductory example
=========================================================
A simple one-dimensional regression example computed in two different ways:
1. A noise-free case
2. A noisy case with known noise-level per ... | kashif/scikit-learn | examples/gaussian_process/plot_gpr_noisy_targets.py | Python | bsd-3-clause | 3,680 | [
"Gaussian"
] | e87c560a15586a1462cd9b785f76ff6f6b4221b68b240b18e1b97070a943c449 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""
Abinit Post Process Application
author: Martin Alexandre
last edited: May 2013
"""
from matplotlib.backends.backend_qt4agg import FigureCanvasQTAgg as FigureCanvasQT
from matplotlib.backends.backend_agg import FigureCanvasAgg as FigureCanvas
from matplotlib.figure im... | jmbeuken/abinit | scripts/post_processing/appa/utility/canvas.py | Python | gpl-3.0 | 5,606 | [
"ABINIT"
] | 6193ffd55ad44838a2618a98838e83cd3f66a368d2ac88d3545f593139dc88ab |
# This module handles the skeleton descriptions stored in trajectory files.
#
# Written by Konrad Hinsen
# last revision: 2001-4-19
#
_undocumented = 1
import MMTK
import MMTK.Environment
import MMTK.ForceFields
import string, types
#
# Atoms
#
class A:
def __init__(self, name, index, type = None):
self.name =... | fxia22/ASM_xf | PythonD/site_python/MMTK/Skeleton.py | Python | gpl-2.0 | 3,867 | [
"CRYSTAL"
] | f681e8c74bb34da3b712bdf939bd3c60b32c5270284541d0fb095ff7c1bca4d9 |
'''
This is a very simple example referenced in the beginner's tutorial:
https://enigmampc.github.io/catalyst/beginner-tutorial.html
Run this example, by executing the following from your terminal:
catalyst run -f buy_btc_simple.py -x bitfinex --start 2016-1-1 --end 2017-9-30 -o buy_btc_simple_out.pickle
If you ... | sovicak/AnonymniAnalytici | 2018_02_15_cryptocurrencies_trading/algorithms/buy_btc_simple.py | Python | mit | 1,343 | [
"VisIt"
] | 33df22bf01baf6b62f80e296b57d5d5b7b36de3c4a81e59680e70695c7a5d016 |
from __future__ import (absolute_import, division, print_function,
unicode_literals)
import calendar
import ccdproc
import collections
import coloredlogs
import datetime
import glob
import logging
import math
import numpy as np
import os
import pandas
import random
import re
import scipy
import... | simontorres/goodman | goodman_pipeline/core/core.py | Python | bsd-3-clause | 181,354 | [
"Gaussian"
] | 7dab4f5050108cfe7ecfd9e2e8f6e1fd15c4b33ab917ce5464e41ea8a60a2eca |
''' DIRAC Transformation DB
Transformation database is used to collect and serve the necessary information
in order to automate the task of job preparation for high level transformations.
This class is typically used as a base class for more specific data processing
databases
'''
import re, time, thre... | sposs/DIRAC | TransformationSystem/DB/TransformationDB.py | Python | gpl-3.0 | 81,020 | [
"DIRAC"
] | dc46d728126b505f1bdfae41fbd5c81450c215fc01b3d74ffbee869f2c1e551e |
# Copyright (C) 2009-2014 CEA/DEN, EDF R&D
#
# This library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License as published by the Free Software Foundation; either
# version 2.1 of the License, or (at your option) any later version.
#
# This library ... | FedoraScientific/salome-hexablock | doc/pyplots/process_vtk.py | Python | lgpl-2.1 | 1,650 | [
"VTK"
] | e073f48c769a31bf52aa97b0ea7e234dc0b3ea8f9cd42051914c93ddfbc788ec |
from __future__ import division
import logging
import optparse
import os
import shutil
import subprocess
import sys
import tempfile
from brocclib.assign import Assigner
from brocclib.get_xml import NcbiEutils
from brocclib.taxonomy_db import NcbiLocal, TAXONOMY_DB_FP
from brocclib.parse import iter_fasta, read_blast
... | kylebittinger/brocc | brocclib/command.py | Python | gpl-3.0 | 6,648 | [
"BLAST"
] | 5634e7cca073e9adb98d2669e21b5aa96c4b129f130d1408c6b823409ec91a31 |
from collections import defaultdict
import datetime
import restkit.errors
import time
import numbers
from django.utils.datastructures import SortedDict
from corehq.apps.reports.standard.cases.basic import CaseListReport
from corehq.apps.reports.standard.cases.data_sources import CaseDisplay
from corehq.pillows.base im... | SEL-Columbia/commcare-hq | custom/_legacy/hsph/reports/field_management.py | Python | bsd-3-clause | 24,096 | [
"VisIt"
] | 65822240ef3f4431197a58e0fc5e227cc457068932d80ff9d4e73def84c60e0c |
# Copyright (C) 2003 CAMP
# Please see the accompanying LICENSE file for further information.
from math import pi
import sys
import numpy as np
from numpy.fft import fftn, ifftn, fft2, ifft2
from gpaw.transformers import Transformer
from gpaw.fd_operators import Laplace, LaplaceA, LaplaceB
from gpaw import PoissonC... | qsnake/gpaw | gpaw/poisson.py | Python | gpl-3.0 | 21,264 | [
"GPAW",
"Gaussian"
] | 289145c871f3817abdf8429a8eb037ae197510c451dd48c24c70f9964bf932ab |
# Copyright: (c) 2013, James Cammarata <jcammarata@ansible.com>
# Copyright: (c) 2018, Ansible Project
# GNU General Public License v3.0+ (see COPYING or https://www.gnu.org/licenses/gpl-3.0.txt)
from __future__ import (absolute_import, division, print_function)
__metaclass__ = type
import os.path
import re
import sh... | pgmillon/ansible | lib/ansible/cli/galaxy.py | Python | gpl-3.0 | 46,300 | [
"Galaxy"
] | e7e5ecd13c99f309b68e4aa7541ddcd87e9f014b3792654520acbc289f43ca71 |
#encoding=utf-8
"""
Courseware views functions
"""
import logging
import urllib
import json
import cgi
from collections import OrderedDict
from datetime import datetime
from django.utils import translation
from django.utils.translation import ugettext as _
from django.utils.translation import ungettext
from django.c... | xuxiao19910803/edx-platform | lms/djangoapps/courseware/views.py | Python | agpl-3.0 | 61,622 | [
"VisIt"
] | 9f9fc30fa5696f77d724c89e3003885d72c3099524cc366047ec31d9e5385832 |
# Copyright (c) 2013, Web Notes Technologies Pvt. Ltd. and Contributors
# License: GNU General Public License v3. See license.txt
from __future__ import unicode_literals
import frappe
import frappe.utils
from frappe.utils import cstr, flt, getdate, comma_and
from frappe import _
from frappe.model.mapper import get_map... | gangadharkadam/sher | erpnext/selling/doctype/sales_order/sales_order.py | Python | agpl-3.0 | 14,276 | [
"VisIt"
] | d953842f2e4c013bef220a174b599de7793bd6353a26f640b7f9782c12117d5e |
#IMPORTS
import numpy as np
import pyfits as pf
import matplotlib.pyplot as plt
from scipy.optimize import leastsq
from scipy.optimize import curve_fit
from scipy.optimize import fmin
import os
from calendar import timegm
# This method uses images in 'focus_dir' to find the best focus for the Telescope
# ... | scizen9/kpy | guider/sedmtools.py | Python | gpl-2.0 | 14,768 | [
"Gaussian"
] | 57a543985de19b27f2a898a920be105b3956852f9bdf921607359cb1eff1f896 |
# Version: 0.19
"""The Versioneer - like a rocketeer, but for versions.
The Versioneer
==============
* like a rocketeer, but for versions!
* https://github.com/python-versioneer/python-versioneer
* Brian Warner
* License: Public Domain
* Compatible with: Python 3.6, 3.7, 3.8, 3.9 and pypy3
* [![Latest Version][pypi... | jreback/pandas | versioneer.py | Python | bsd-3-clause | 70,095 | [
"Brian"
] | 79431ab39d9fcafb372b2803c73c83ab1f5b485632e4fdd1be660d1fd91413be |
"""
Defines the database models
"""
import json
from datetime import datetime
from flask_sqlalchemy import SQLAlchemy
db = SQLAlchemy()
class Order(db.Model):
"""ORM object for the orders.
Takes drink, message and optional time of order.
order_id is automatically assigned.
Running eval on the outpu... | Laspimon/transact | app/members.py | Python | mit | 2,761 | [
"ESPResSo"
] | 80e9b2d56863c24184722ae492e7a97d5e6d56d7fa7274e67ec29f024c640b07 |
#!/usr/bin/env python
"""
Laplace equation with shifted periodic BCs.
Display using::
./postproc.py laplace_shifted_periodic.vtk --wireframe -b -d'u,plot_warp_scalar,rel_scaling=1'
or use the --show option.
"""
from __future__ import absolute_import
import sys
sys.path.append('.')
from argparse import ArgumentPars... | sfepy/sfepy | examples/diffusion/laplace_shifted_periodic.py | Python | bsd-3-clause | 5,046 | [
"VTK"
] | 77d2093e3a600356a040fcc2ff357d3306c5d546fabecffcfb1ce8e63766253d |
#! /usr/bin/env python
# -*- coding: utf-8 -*-
import logging
import re
import urllib.parse as urlparse
import json
import os
import time
import traceback
from urllib.parse import urlencode
from bs4 import BeautifulSoup
from selenium.webdriver import DesiredCapabilities
from selenium.webdriver import FirefoxProfile
f... | CvvT/crawler_sqlmap | crawler/crawler.py | Python | apache-2.0 | 9,101 | [
"VisIt"
] | a99d9df6c32246b2febbebef30376525f791552b26162d695f0ff23099b4433a |
#pylint: disable=missing-docstring
#* This file is part of the MOOSE framework
#* https://www.mooseframework.org
#*
#* All rights reserved, see COPYRIGHT for full restrictions
#* https://github.com/idaholab/moose/blob/master/COPYRIGHT
#*
#* Licensed under LGPL 2.1, please see LICENSE for details
#* https://www.gnu.org/... | nuclear-wizard/moose | python/chigger/filters/PlaneClipper.py | Python | lgpl-2.1 | 1,242 | [
"MOOSE",
"VTK"
] | ae1d05b673ed76733825c3f208022d380467eacbbe6511cd3798e953ed0dbc21 |
#!/usr/bin/python
#
# Created on Aug 25, 2016
# @author: Gaurav Rastogi (grastogi@avinetworks.com)
# Eric Anderson (eanderson@avinetworks.com)
# module_check: supported
# Avi Version: 17.1.1
#
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the te... | e-gob/plataforma-kioscos-autoatencion | scripts/ansible-play/.venv/lib/python2.7/site-packages/ansible/modules/network/avi/avi_sslprofile.py | Python | bsd-3-clause | 7,849 | [
"VisIt"
] | 1c8af7f35522c778f0275199f8b2a8340bf2ed98396e402cd8ee3904fc78af6d |
# Unit tests for cache framework
# Uses whatever cache backend is set in the test settings file.
import copy
import io
import os
import pickle
import re
import shutil
import tempfile
import threading
import time
import unittest
import warnings
from unittest import mock
from django.conf import settings
from django.core... | mattseymour/django | tests/cache/tests.py | Python | bsd-3-clause | 91,717 | [
"Brian"
] | 7c712187b10a8cfd99ab65ea634d2b2c62897ef2d43b03972e95824d856341fb |
from django.db import models
from taggit.managers import TaggableManager
ARTIFACT_TYPES = (
(0, 'Gold'),
(1, 'Treasure'),
(2, 'Weapon'),
(3, 'Magic Weapon'),
(4, 'Container'),
(5, 'Light Source'),
(6, 'Drinkable'),
(7, 'Readable'),
(8, 'Door/Gate'),
(9, 'Edible'),
(10, 'Boun... | kdechant/eamon | adventure/models.py | Python | mit | 22,320 | [
"BLAST"
] | dd0b680a06f69ec93057f1aad3a5315d79814a855c333aea828a19aced97e36d |
# -*- coding: utf-8 -*-
"""
Acceptance tests for CMS Video Module.
"""
import os
from mock import patch
from nose.plugins.attrib import attr
from unittest import skipIf
from ...pages.studio.auto_auth import AutoAuthPage
from ...pages.studio.overview import CourseOutlinePage
from ...pages.studio.video.video import Vid... | JCBarahona/edX | common/test/acceptance/tests/video/test_studio_video_module.py | Python | agpl-3.0 | 11,750 | [
"VisIt"
] | 99333970e5ab6de9caff16e70caac8fe881a90024b56a7e27ad5f39312349db0 |
#-----------------------------------------------------------------------------
# Copyright (c) 2010-2012 Brian Granger, Min Ragan-Kelley
#
# This file is part of pyzmq
#
# Distributed under the terms of the New BSD License. The full license is in
# the file COPYING.BSD, distributed as part of this software.
#-----... | ellisonbg/pyzmq | zmq/tests/test_ioloop.py | Python | lgpl-3.0 | 4,155 | [
"Brian"
] | 3092fb9fb552dac6dc2fe5095b5e5cd5b13a318c1005c81377b0c1362224753f |
#######################################################################################
# Python-code: Shiny Bubblebeam wrapper
# Author: Adam L Borne
# Contributers: Paul A Stewart, Brent Kuenzi
#######################################################################################
# This program runs the R scrip... | bornea/APOSTL | shiny_bubble/APOSTL_Interactive_Analysis.py | Python | gpl-2.0 | 3,548 | [
"Galaxy"
] | 2fd4b273add241f1c700c3e55be4ce70c9e9e53b4ce00e24c83b666391a81042 |
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not use ... | SecurityCompass/libcloud | libcloud/security.py | Python | apache-2.0 | 2,959 | [
"VisIt"
] | 6870f5dd3dcc5a3a24e8a28a88cd6c2a89ded142c6a54cae5fc186843b8e4218 |
#!/usr/bin/env python
# Copyright 2014-2018 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# U... | gkc1000/pyscf | pyscf/lib/test/test_misc.py | Python | apache-2.0 | 1,673 | [
"PySCF"
] | 3a4a33ae76ca011589426c9275a2932cd4b6db7cdac19ce66aa3c7a80fe69bb4 |
# Animation.py
# Aaron Taylor
# Moose Abumeeiz
#
# This is the class for all animations in the game, based on time
# it will advance the frame when it is the correct time
#
from pygame import *
from time import time as cTime
class Animation:
"""Class to handle all animation timing"""
def __init__(self, frames, in... | ExPHAT/binding-of-isaac | Animation.py | Python | mit | 2,346 | [
"MOOSE"
] | 4131f6a5ca50dfb3127b987511bd6175bfc59f8a78d77388632d81af26b5035c |
""" This tests only need the PilotAgentsDB, and connects directly to it
Suggestion: for local testing, run this with::
python -m pytest -c ../pytest.ini -vv tests/Integration/WorkloadManagementSystem/Test_PilotAgentsDB.py
"""
# pylint: disable=wrong-import-position
import DIRAC
DIRAC.initialize() # Ini... | DIRACGrid/DIRAC | tests/Integration/WorkloadManagementSystem/Test_PilotAgentsDB.py | Python | gpl-3.0 | 6,648 | [
"DIRAC"
] | 96ca688247e38be699486bde1180090b8a36b550b9384b53a99c002fcb0ddb6c |
"""
Octave (and Matlab) code printer
The `OctaveCodePrinter` converts SymPy expressions into Octave expressions.
It uses a subset of the Octave language for Matlab compatibility.
A complete code generator, which uses `octave_code` extensively, can be found
in `sympy.utilities.codegen`. The `codegen` module can be us... | kaichogami/sympy | sympy/printing/octave.py | Python | bsd-3-clause | 22,542 | [
"DIRAC"
] | c6da626f7aeab8f8202069267f2d213abc896554e71d82568286806db16277f8 |
# -*- coding: utf-8 -*-
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2003-2005 Donald N. Allingham
# Copyright (C) 2008 Stefan Siegel
# Copyright (C) 2008 Brian G. Matherly
# Copyright (C) 2021 Mirko Leonhaeuser
#
# This program is free software; you can redistribute it and/or ... | Nick-Hall/gramps | gramps/plugins/rel/rel_de.py | Python | gpl-2.0 | 11,357 | [
"Brian"
] | fc9e40daf086f2fa41b190dfd5b3cd1401f2621ab6b3fec7eedd560263676561 |
"""Courses API Version 1.0.
This API client was generated using a template. Make sure this code is valid before using it.
"""
import logging
from datetime import date, datetime
from .base import BaseCanvasAPI
from .base import BaseModel
class CoursesAPI(BaseCanvasAPI):
"""Courses API Version 1.0."""
def __i... | tylerclair/py3canvas | py3canvas/apis/courses.py | Python | mit | 129,580 | [
"VisIt"
] | cb6f86e8512b50205433ebf237dbea622da188c1638c8ca5c1add8555bb68cb8 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
#
# Copyright (C) 2017 Lenovo, Inc.
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# ... | adityacs/ansible | lib/ansible/modules/network/lenovo/cnos_conditional_template.py | Python | gpl-3.0 | 8,539 | [
"VisIt"
] | e2366a0b81b1055e751b56501cb268cf54a2598a5ef2dc62200225a41db7075a |
#!/usr/bin/env python
# adds episodes from an external source, like a json file or url.
"""
fields:
title - Talk title
speakers - list of:
name - person's name.
email - email address (hide behind auth)
twitter_id - twitter @username
bio - info about the person
picture_url - head shot
summary - short descri... | yoe/veyepar | dj/scripts/addeps.py | Python | mit | 120,529 | [
"Brian"
] | 1ddd1b5c327cc51efeeebaf463de3f79ef5028cfca0df52e660470dee9f0479e |
# this program corresponds to special.py
### Means test is not done yet
# E Means test is giving error (E)
# F Means test is failing (F)
# EF Means test is giving error and Failing
#! Means test is segfaulting
# 8 Means test runs forever
### test_besselpoly
### test_mathieu_a
### test_mathieu_even_coef
##... | witcxc/scipy | scipy/special/tests/test_basic.py | Python | bsd-3-clause | 119,513 | [
"Elk"
] | 91f57bb651ae6e9c109a1321aee661a2f0a75fdafeba043f8ad484f670b46dd1 |
#!/usr/bin/python
"""Test of the fix for bug 568768"""
from macaroon.playback import *
import utils
sequence = MacroSequence()
########################################################################
# Load the local test case.
#
sequence.append(KeyComboAction("<Control>l"))
sequence.append(TypeAction(utils.htmlURL... | h4ck3rm1k3/orca-sonar | test/keystrokes/firefox/bug_568768.py | Python | lgpl-2.1 | 1,454 | [
"ORCA"
] | 35af77bebeb45dc2ba21de539c71bf5973f0d59addb1a2f77a3c0307092e8f58 |
""" test File Plugin
"""
from __future__ import print_function
from __future__ import absolute_import
from __future__ import division
import mock
import unittest
import tempfile
import os
import shutil
import errno
from DIRAC import S_OK
from DIRAC.Resources.Storage.StorageElement import StorageElementItem
def mock... | ic-hep/DIRAC | src/DIRAC/Resources/Storage/test/Test_FilePlugin.py | Python | gpl-3.0 | 18,616 | [
"DIRAC"
] | edee6292cdd0e65fd64099653a82c7e322a536c749d048b8ca2f24b9f4291f8b |
# -*- Mode: Python; coding: utf-8; indent-tabs-mode: nil; tab-width: 4 -*-
# ## BEGIN LICENSE
# Copyright (c) 2012, Peter Levi <peterlevi@peterlevi.com>
# This program is free software: you can redistribute it and/or modify it
# under the terms of the GNU General Public License version 3, as published
# by the Free Sof... | GLolol/variety | variety/Smart.py | Python | gpl-3.0 | 37,386 | [
"VisIt"
] | cc458bb3844a8136017b2595be3c98eaa38a661b5ccf6017d9bc23e5e73a2005 |
import unittest
import ssexp
class JsonTests(unittest.TestCase):
def setUp(self):
class Parrot(object):
def __init__(self, is_dead=True, from_egg=None):
self.is_dead = is_dead
self.from_egg = from_egg
self.preserializer = ssexp.SsexpPreserializer()
... | jahs/ssexp | test.py | Python | mit | 2,221 | [
"Brian"
] | c116e2fe99acee56e2d3c314b2b897c07656886d816b9be7c7d751c9f6b289b4 |
'''
Copyright 2016 Crowd-ML team
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in wri... | jihunhamm/Crowd-ML | client/python/pythonClient.py | Python | apache-2.0 | 12,063 | [
"Gaussian"
] | 47e28aaaab4588e14121651d244cd4fd3a3e7d9f3d3bc5b566621951d2820125 |
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