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# The MIT License
#
# Copyright 2014, 2015 Piotr Dabkowski
#
# Permission is hereby granted, free of charge, to any person obtaining
# a copy of this software and associated documentation files (the 'Software'),
# to deal in the Software without restriction, including without limitation the rights
# to use, copy, modif... | repotvsupertuga/tvsupertuga.repository | script.module.universalscrapers/lib/universalscrapers/modules/js2py/translators/pyjsparser.py | Python | gpl-2.0 | 105,094 | [
"VisIt"
] | 42c86e792476c9b3735d2436fcdef514f3b033d639fd07e820b958af852a0818 |
# -*- coding: utf-8 -*-
"""
***************************************************************************
translate.py
---------------------
Date : August 2012
Copyright : (C) 2012 by Victor Olaya
Email : volayaf at gmail dot com
*****************************... | nirvn/QGIS | python/plugins/processing/algs/gdal/gdaladdo.py | Python | gpl-2.0 | 5,341 | [
"Gaussian"
] | 1f5c129ab8787ff2aa86832b6bb8e3f4d30330846d6575ff51abc5d7b984d607 |
"""
Unit tests for the sumatra.programs module
"""
from __future__ import unicode_literals
from builtins import str
from builtins import object
try:
import unittest2 as unittest
except ImportError:
import unittest
import distutils.spawn
import sys
import os
try:
from subprocess import check_output
except I... | dpad/sumatra | test/unittests/test_programs.py | Python | bsd-2-clause | 4,677 | [
"NEURON"
] | 4042a30ad3b86806479630ad10169dca1e107029e55683fa576645ff7fc5a159 |
import unittest
from funcparserlib.parser import finished, skip
from tango.parser import parse
from tango.scope_binder import ScopeBinder, SymbolsExtractor
from tango.utils import find
class TestScopeBinder(unittest.TestCase):
@classmethod
def setUpClass(cls):
cls.scope_binder = ScopeBinder()
... | kyouko-taiga/tango | tests/test_scope_binder.py | Python | apache-2.0 | 2,119 | [
"VisIt"
] | 520095a06c477ac67900f9e629bbcf70a15e1613b9b8ce4bf2de42236a6dbc28 |
# -*- coding: utf-8 -*-
#
# connections.py
#
# This file is part of NEST.
#
# Copyright (C) 2004 The NEST Initiative
#
# NEST is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 2 of the License, or... | tobikausk/nest-simulator | topology/doc/user_manual_scripts/connections.py | Python | gpl-2.0 | 18,862 | [
"Gaussian"
] | 3e1c055da002c045ed2093f972ca27e83c7fb8fe2623686578369a6deccec65a |
import string
import numpy as np
from sklearn.base import BaseEstimator
from sklearn.utils import check_random_state
from sklearn.utils.extmath import logsumexp
from . import _hmmc
from .utils import normalize
decoder_algorithms = frozenset(("viterbi", "map"))
ZEROLOGPROB = -1e200
EPS = np.finfo(float).eps
NEGINF... | emmaggie/hmmlearn | hmmlearn/base.py | Python | bsd-3-clause | 19,348 | [
"Gaussian"
] | a59631285e07017182aed8affe2a275a5152205a96ec33c85432de55221057d4 |
# =============================================================================
# PROJECT CHRONO - http:#projectchrono.org
#
# Copyright (c) 2019 projectchrono.org
# All rights reserved.
#
# Use of this source code is governed by a BSD-style license that can be found
# in the LICENSE file at the top level of the distri... | projectchrono/chrono | src/demos/python/sensor/demo_SEN_camera.py | Python | bsd-3-clause | 7,508 | [
"Gaussian"
] | e499ea562ac786555689da97613d6b7ea3acf71c888e5a78873a962f8c840405 |
# A simple CLI runner for slurm that can be used when running Galaxy from a
# non-submit host and using a Slurm cluster.
from logging import getLogger
try:
from galaxy.model import Job
job_states = Job.states
except ImportError:
# Not in Galaxy, map Galaxy job states to Pulsar ones.
from pulsar.util im... | galaxyproject/pulsar | pulsar/managers/util/cli/job/lsf.py | Python | apache-2.0 | 4,846 | [
"Galaxy"
] | d7d84a97839adc4d3c594150581f14febe44be3447abe3e4236d8c94e915adf4 |
import os, sys
import socket
import logging
import marshal
import cPickle
import threading, Queue
import time
import random
import getpass
import urllib
import warnings
import weakref
import multiprocessing
import zmq
import pymesos as mesos
import pymesos.mesos_pb2 as mesos_pb2
from dpark.util import compress, deco... | ee08b397/dpark | dpark/schedule.py | Python | bsd-3-clause | 28,302 | [
"VisIt"
] | 0a3a0a795c4f1f8108100d9e73076aa997ee63ea08d6640cf3d60f4124a547c6 |
# ipop-project
# Copyright 2016, University of Florida
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# to use, copy, modify, m... | cstapler/Controllers | controller/framework/CFx.py | Python | mit | 10,683 | [
"VisIt"
] | 72e3fcc0a15aa79c4c16118115446785a9fd40d3e76478ca117498166ad1965d |
#!/usr/bin/env python
# Copyright 2014-2018 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# U... | gkc1000/pyscf | pyscf/qmmm/test/test_itrf.py | Python | apache-2.0 | 4,809 | [
"PySCF"
] | f4f706e1134c1ac76f269cbd3ab1035c5212fabe33f0a7813d27d1b49f77cec7 |
from galaxy.webapps.galaxy.controllers.user import *
| mikel-egana-aranguren/SADI-Galaxy-Docker | galaxy-dist/lib/galaxy/webapps/tool_shed/controllers/user.py | Python | gpl-3.0 | 53 | [
"Galaxy"
] | c22e44b073b82f1c1c6405fedc853294077037ac357e7f361ca4a1dd0b6e0b7e |
#!python3
# File skipper.py
class SkipObject:
def __init__(self, wrapped): # Save item to be used
self.wrapped = wrapped
def __iter__(self):
return SkipIterator(self.wrapped) # New iterator each time
class SkipIterator:
def __init__(self, wrapped):
... | simontakite/sysadmin | pythonscripts/learningPython/skipper.py | Python | gpl-2.0 | 1,209 | [
"VisIt"
] | edc907a5276876f2d36878d9897272f2f424849f9490704c386c677d1fc2c3a0 |
#!/usr/bin/env python
import os
from setuptools import setup
on_rtd = os.environ.get('READTHEDOCS', None) == 'True'
# read the docs could not compile numpy and c extensions
if on_rtd:
setup_requires = []
install_requires = []
tests_require = []
else:
setup_requires = [
'nose',
'coverag... | ianlini/serialtime | setup.py | Python | bsd-2-clause | 1,493 | [
"VisIt"
] | 09cce3d349dc72607ab48df14ffcdc5c45ad1441d802beaff8fc35d590e229fd |
"""
Geosoft vox display handling, which manages the rendering of a `geosoft.gxpy.vox.Vox` in a 3d view.
:Classes:
:`VoxDisplay`: 3D visualization of a vox, which can be placed `geosoft.gxpy.view.View_3d`
:Constants:
:ZONE_DEFAULT: 0
:ZONE_LINEAR: 1
:ZONE_NORMAL: 2
:ZONE_EQUALAREA: 3
:ZONE_SHAD... | GeosoftInc/gxpy | geosoft/gxpy/vox_display.py | Python | bsd-2-clause | 15,566 | [
"Gaussian"
] | 99d1974296326d577fa3c34db3660128cb3dc62c34c1fbdb4e457956c3eac895 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
import vtk
def main():
colors = vtk.vtkNamedColors()
planes = list()
titles = list()
# Using frustum planes.
titles.append('Using frustum planes')
camera = vtk.vtkCamera()
planesArray = [0] * 24
camera.GetFrustumPlanes(1, planesArray)
... | lorensen/VTKExamples | src/Python/GeometricObjects/Planes.py | Python | apache-2.0 | 4,142 | [
"VTK"
] | fdc7b81eacd86dbeda41b15ddb2e5915e132bc619db661f76a161037f834e983 |
#!/usr/bin/env python
# File: plot_icd_vs_mass.py
# Created on: Mon 12 Mar 2012 11:50:09 AM CDT
# Last Change: Thu Feb 28 17:11:01 2013
# Purpose of script: <+INSERT+>
# Author: Steven Boada
import pylab as pyl
from mk_galaxy_struc import mk_galaxy_struc
def plot_icd_vs_mass():
galaxies = mk_galaxy_struc()
ga... | boada/ICD | sandbox/legacy_plot_code/plot_icd_vs_mass_p1ar.py | Python | mit | 1,673 | [
"Galaxy"
] | 6226571fcf6e749e071abd7406e0eeba8f91a6f7a988b54b18187a4a9874b4cb |
import os, sys
import vtk, qt, ctk, slicer
from slicer.ScriptedLoadableModule import *
from CIP.logic.SlicerUtil import SlicerUtil
from CIP_PointsLabelling import CIP_PointsLabelling, CIP_PointsLabellingWidget, CIP_PointsLabellingLogic
# Note: this is necessary in development because of the python path dependency
# tr... | acil-bwh/SlicerCIP | Scripted/CIP_ParenchymaSubtypeTraining/CIP_ParenchymaSubtypeTraining.py | Python | bsd-3-clause | 19,171 | [
"VTK"
] | 94cac648aa74f2d89a1bbd209e5dcd08fd0cb015b22cc0e2e71c4142d040a968 |
#!/usr/bin/env python3
#* This file is part of the MOOSE framework
#* https://www.mooseframework.org
#*
#* All rights reserved, see COPYRIGHT for full restrictions
#* https://github.com/idaholab/moose/blob/master/COPYRIGHT
#*
#* Licensed under LGPL 2.1, please see LICENSE for details
#* https://www.gnu.org/licenses/lgp... | nuclear-wizard/moose | python/peacock/Execute/ExecuteTabPlugin.py | Python | lgpl-2.1 | 6,818 | [
"MOOSE"
] | 59ea9a360c1d3b3c26a9c3e1000ec0485ef16241766c42910f34de95e8e5b363 |
#!/usr/bin/env python
#pylint: disable=missing-docstring
#################################################################
# DO NOT MODIFY THIS HEADER #
# MOOSE - Multiphysics Object Oriented Simulation Environment #
# #... | liuwenf/moose | python/chigger/tests/exodus/blocks/boundary.py | Python | lgpl-2.1 | 1,540 | [
"MOOSE",
"VTK"
] | c24100b34a748cbeefcba0c9500760fbb01ce91c7e8bdb8dd580485d967c34f5 |
########################################################################
# File : HTCondorCEComputingElement.py
# Author : A.S.
########################################################################
"""HTCondorCE Computing Element
Allows direct submission to HTCondorCE Computing Elements with a SiteDirector Ag... | chaen/DIRAC | Resources/Computing/HTCondorCEComputingElement.py | Python | gpl-3.0 | 17,070 | [
"DIRAC"
] | 0adff4ba94c8f8be7ed66f4551769e2e7647169239b2111afa870d3c7b7bbeb0 |
#!/usr/bin/python
#
# Copyright 2014 Google Inc. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the 'License');
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required b... | dietrichc/streamline-ppc-reports | examples/adwords/v201409/remarketing/add_rule_based_user_lists.py | Python | apache-2.0 | 5,782 | [
"VisIt"
] | 8cbab0021ae10d358335dd4c818fbe7d98d0d64e75809e4bbda6e2354fe9f673 |
import numpy as np
import matplotlib.pyplot as plt
from skimage import data, draw, color, transform, feature, measure, \
filters, morphology, segmentation, restoration, io, img_as_float
image = io.imread('./testzie/dataset/seal_real.jpg')
image = io.imread('./testzie/dataset/seal_bad.jpg')
image = io.imread('./tes... | amozie/amozie | testzie/skimage_test/deal_seal_photo.py | Python | apache-2.0 | 1,854 | [
"Gaussian"
] | f640afe18bab60208b0b12415a26d25ab963d97000eefaac550f9c7b328c5905 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
#
# (c) Copyright 2003-2008 Hewlett-Packard Development Company, L.P.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the Lice... | matrumz/RPi_Custom_Files | Printing/hplip-3.15.2/scan/sane.py | Python | gpl-2.0 | 21,004 | [
"ADF"
] | b4ba8183a78a558f1d5d3b5428fc760f67475542425db29d5612a62afb4e5352 |
#!/usr/bin/env python
#<examples/doc_with_itercb.py>
from numpy import linspace, random
import matplotlib.pylab as pylab
from lmfit.models import LinearModel, GaussianModel
from lmfit.lineshapes import gaussian
def per_iteration(pars, iter, resid, *args, **kws):
if iter < 3 or iter % 10 == 0:
out = ['== ... | DiamondLightSource/auto_tomo_calibration-experimental | old_code_scripts/simulate_data/lmfit-py/examples/doc_model_with_iter_callback.py | Python | apache-2.0 | 1,109 | [
"Gaussian"
] | 2b32bcfe49c61b9edb7a78daa0d5f67628bc825f30f62745c4b9430538be111e |
"""
DataFrame
---------
An efficient 2D container for potentially mixed-type time series or other
labeled data series.
Similar to its R counterpart, data.frame, except providing automatic data
alignment and a host of useful data manipulation methods having to do with the
labeling information
"""
from __future__ import... | pandas-dev/pandas | pandas/core/frame.py | Python | bsd-3-clause | 384,508 | [
"Elk"
] | 422256e12d3b5bbae1a89e2b422f1f37b8e4e11688f8b09ade12bb2dd36d9ac9 |
"""Utility functions for plotting M/EEG data
"""
from __future__ import print_function
# Authors: Alexandre Gramfort <alexandre.gramfort@telecom-paristech.fr>
# Denis Engemann <denis.engemann@gmail.com>
# Martin Luessi <mluessi@nmr.mgh.harvard.edu>
# Eric Larson <larson.eric.d@gmail.com>
# ... | trachelr/mne-python | mne/viz/utils.py | Python | bsd-3-clause | 29,921 | [
"Mayavi"
] | 9088610e0574fa84df278d8f232b2edd0a333058eaabaac4135ab31ae7126d48 |
# -*- coding: utf-8 -*-
# vim: autoindent shiftwidth=4 expandtab textwidth=120 tabstop=4 softtabstop=4
###############################################################################
# OpenLP - Open Source Lyrics Projection #
# ------------------------------------------------------... | marmyshev/item_title | openlp/plugins/songusage/songusageplugin.py | Python | gpl-2.0 | 11,613 | [
"Brian"
] | b3001d5ea5d5c009b94255a3a5632cf0e29af3a8f15ad78be1351e2fbcec205b |
"""Pygame-based media controller for MPF, based on the Backbox Control Protocol
(BCP) v1.0"""
# media_controller.py
# Mission Pinball Framework
# Written by Brian Madden & Gabe Knuth
# Released under the MIT License. (See license info at the end of this file.)
# The Backbox Control Protocol was conceived and developed... | jabdoa2/mpf | mpf/media_controller/core/media_controller.py | Python | mit | 26,941 | [
"Brian"
] | 6e2a8ec23597ef10cd5368bfda89470dd5e26c07975ab2f795b46a17696e7b2a |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
from __future__ import unicode_literals, division, print_function
import numpy as np
import unittest
from pymatgen.analysis.eos import EOS, NumericalEOS
from pymatgen.util.testing import PymatgenTest
class ... | matk86/pymatgen | pymatgen/analysis/tests/test_eos.py | Python | mit | 4,777 | [
"pymatgen"
] | a2365e0aa789bef6e4d4a5d8d4c35df7d13b332d70e17102dc04f9787c6aa8fd |
import pathlib
import h5py
import numpy as np
import pytest
from scipy.ndimage.filters import gaussian_filter
import dclab
from dclab.rtdc_dataset.feat_anc_plugin.plugin_feature import (
PlugInFeature, import_plugin_feature_script,
remove_plugin_feature, remove_all_plugin_features,
PluginImportError)
from ... | ZellMechanik-Dresden/dclab | tests/test_rtdc_feat_anc_plugin.py | Python | gpl-2.0 | 29,760 | [
"Gaussian"
] | a573fde4c0963a69bc28d4e9add61f7e13b615a500046643eaaefc7644990877 |
# Copyright (c) 2012 Spotify AB
#
# Licensed under the Apache License, Version 2.0 (the "License"); you may not
# use this file except in compliance with the License. You may obtain a copy of
# the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, s... | foursquare/luigi | setup.py | Python | apache-2.0 | 3,217 | [
"VisIt"
] | c42a976ecf349f70a4cdcc9e5fef88ee24e034b66eefa1bbb92894a4ef6c3805 |
"""
Automatically find examples of a Brian object or function.
"""
import os, re
from collections import defaultdict
from .generate_examples import GlobDirectoryWalker
from brian2.utils.stringtools import get_identifiers
__all__ = ['auto_find_examples']
the_examples_map = defaultdict(list)
the_tutorials_map = defau... | brian-team/brian2cuda | brian2cuda/sphinxext/examplefinder.py | Python | gpl-2.0 | 2,770 | [
"Brian"
] | bd0e0592cadda3f05d4d8c41bd438b0c35b3b2450baf3accef652649f9af5cd0 |
"""
Test functions for stats module
"""
import warnings
import re
import sys
import pickle
import os
from numpy.testing import (assert_equal, assert_array_equal,
assert_almost_equal, assert_array_almost_equal,
assert_allclose, assert_, assert_warns,
... | WarrenWeckesser/scipy | scipy/stats/tests/test_distributions.py | Python | bsd-3-clause | 230,495 | [
"Gaussian"
] | 1bad3db6dc8845d43a5174f737768a2f635e460beeee0db9fb01165c515a940e |
# -*- coding: utf-8 -*-
"""
A real simple app for using webapp2 with auth and session.
It just covers the basics. Creating a user, login, logout
and a decorator for protecting certain handlers.
Routes are setup in routes.py and added in main.py
"""
# standard library imports
import logging
import jso... | skumar07/Air-Share-Real | boilerplate/handlers.py | Python | lgpl-3.0 | 65,606 | [
"VisIt"
] | b457b5458b29f8dc3fb60e45ddc747132caf449f57a6af9badb2ea71623d86a0 |
# NOTE: Do not add any dependencies to this file - it needs to be run in a
# subprocess by a python version that might not have any installed packages,
# including importlab itself.
from __future__ import print_function
import ast
import json
import os
import sys
# Pytype doesn't recognize the `major` attribute:
# h... | google/importlab | importlab/import_finder.py | Python | apache-2.0 | 5,424 | [
"VisIt"
] | 05ca81c7fbfea01ff776e78913e03f1ed94a3666f4e2ac44be03b601a5e669d6 |
# proxy module
from __future__ import absolute_import
from mayavi.tools.data_wizards.csv_source_factory import *
| enthought/etsproxy | enthought/mayavi/tools/data_wizards/csv_source_factory.py | Python | bsd-3-clause | 113 | [
"Mayavi"
] | 25de5fde38b6ca8eacf5f2996b126f8e68375a08a5def6df66a01774a458ea7b |
# encoding=utf8
# python plugin framework
# snowdreamist@live.cn
# 2014/1/4
# NOTE
__version__ = '1.0.0.0'
import sys
import os
import os.path
import types
import logging
import time
from ConfigParser import ConfigParser
class PluginSource(object):
"""
The plugin source which engine absorbs plugins from
... | snowdreamist/wfpy | src/wfpy/pluginpy.py | Python | gpl-3.0 | 22,059 | [
"VisIt"
] | dd4f1c58ee9b992fb7f0df777083ff911d7c65f60bb9b20f10d33c6f7c2c8119 |
#!/usr/bin/env python2
import os, sys, re
# Scripts and programs
python_exec = 'python2'
build_pdb_script = '~/opt/script/BuildAllAtomsFromLammps.py'
# Auxillary functions
def build_pdb(dump_file, snapshot_index, structure_index):
path, file_name = os.path.split(dump_file)
print path
print "%s %s %s struc... | luwei0917/awsemmd_script | archive/back_pick_structures.py | Python | mit | 4,192 | [
"VMD"
] | 8f1bea98d7a4cc174dd5cd07499ee51b51af36664ca5299ec678a0647ef67b3d |
# -*- coding: utf-8 -*-
"""
Create an initial ATP Profile for an ECs Mesh and write it out as .vtp.
"""
import os
import sys
# Run in current directory.
os.chdir(os.path.dirname(os.path.abspath(__file__)))
# Import path for the GenerateATPMapV2 script.
importPath = os.path.abspath(os.path.join(os.path.dirname(__file... | BlueFern/DBiharMesher | meshes/c8000/Generate8000ATPMesh.py | Python | gpl-2.0 | 1,123 | [
"VTK"
] | 99507936339ecf4c97297feb60d7e830373312bd6fdd47a9d7bd8c2a511f5ffe |
#!/usr/bin/env python
"""
Experimentations with feature tracking. Working towards the following paper:
Kanhere, Neeraj K., and Stanley T. Birchfield. "Real-time incremental segmentation and tracking of vehicles at low camera angles using stable features." IEEE Transactions on Intelligent Transportation Systems 9.1 (2... | gwparikh/cvgui | featuretracker.py | Python | mit | 14,601 | [
"Gaussian"
] | 961c6f9a89c1ab2036044a98e0b047c65ec86b36072a04a32d66da257b333ac1 |
# -*- coding: utf-8 -*-
# Copyright: (c) 2019, Ansible Project
# GNU General Public License v3.0+ (see COPYING or https://www.gnu.org/licenses/gpl-3.0.txt)
# Make coding more python3-ish
from __future__ import (absolute_import, division, print_function)
__metaclass__ = type
import copy
import json
import os
import py... | simonwydooghe/ansible | test/units/galaxy/test_collection_install.py | Python | gpl-3.0 | 33,210 | [
"Galaxy"
] | 0b609391b2cd8379b4cd28b27fde0cfbfa785fb60883d01b7606b3c9093aab14 |
input_name = '../examples/multi_physics/biot.py'
output_name = 'test_biot.vtk'
from tests_basic import TestInput
class Test( TestInput ):
pass
| RexFuzzle/sfepy | tests/test_input_biot.py | Python | bsd-3-clause | 149 | [
"VTK"
] | 15b60da70ce14b22f6154061f498967ffb0fe46539ed7af56fae6ca9917114fd |
# License: BSD 3 clause
import numpy as np
from scipy.linalg.special_matrices import toeplitz
def features_normal_cov_uniform(n_samples: int = 200, n_features: int = 30,
dtype="float64"):
"""Normal features generator with uniform covariance
An example of features obtained as ... | Dekken/tick | tick/simulation/features.py | Python | bsd-3-clause | 2,316 | [
"Gaussian"
] | d30c7b09baa16460aab7e51bc3ac645ec4eb1bf6bf90e533e5ddccce555c32a1 |
'''
*** SHED SKIN Python-to-C++ Compiler ***
Copyright 2005-2013 Mark Dufour; License GNU GPL version 3 (See LICENSE)
graph.py: build constraint graph used in dataflow analysis
constraint graph: graph along which possible types 'flow' during an 'abstract execution' of a program (a dataflow analysis). consider the ass... | shedskin/shedskin | shedskin/graph.py | Python | gpl-3.0 | 71,909 | [
"VisIt"
] | 7793836f8eba820f622a2613e9349a198e679517469e1023d9acb77996c1d44b |
import numpy as np, pandas as pd
import nose.tools as nt
import numpy.testing.decorators as dec
from itertools import product
from ...tests.flags import SMALL_SAMPLES
from ...tests.instance import (gaussian_instance as instance,
logistic_instance)
from ...tests.decorators import (... | selective-inference/selective-inference | selectinf/algorithms/tests/test_lasso.py | Python | bsd-3-clause | 27,613 | [
"Gaussian"
] | 18d7bb1903593fe9231f9b77c7c67e02f34df3c5cb02e27ce51d6ea07f86db84 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
from __future__ import (absolute_import, division, print_function)
__metaclass__ = type
#
# Copyright (C) 2017 Lenovo, Inc.
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public Licens... | caphrim007/ansible | lib/ansible/modules/network/cnos/cnos_vlag.py | Python | gpl-3.0 | 18,499 | [
"VisIt"
] | 4e3cb3b9212d8e20a812c6ae7af4f1fc97422763fad712a945c1b33120b57f60 |
"""
This module contains all modifiers of OVITO.
The abstract base class of all modifier types is the :py:class:`Modifier` class.
Typically you create a modifier instance, set its parameters, and finally insert it into the
modification pipeline of an :py:class:`~ovito.ObjectNode`, e.g.::
from ovito.modifiers impo... | srinath-chakravarthy/ovito | src/plugins/pyscript/python/ovito/modifiers/__init__.py | Python | gpl-3.0 | 4,052 | [
"OVITO"
] | 8a0a1005f56af9c31e2ad298e82cd21b64738d22c98ccc9973587df245f96d52 |
"""
Linear Discriminant Analysis and Quadratic Discriminant Analysis
"""
# Authors: Clemens Brunner
# Martin Billinger
# Matthieu Perrot
# Mathieu Blondel
# License: BSD 3-Clause
from __future__ import print_function
import warnings
import numpy as np
from scipy import linalg
from .extern... | wazeerzulfikar/scikit-learn | sklearn/discriminant_analysis.py | Python | bsd-3-clause | 26,698 | [
"Gaussian"
] | dcdda44270af5fe3a96ce11df11eb0ab73ffd77bde7aadc52dae66d126766302 |
"""
.. module:: pysm
:platform: Unix
:synopsis: module containing primary use classes Sky and Instrument.
.. moduleauthor: Ben Thorne <ben.thorne@physics.ox.ac.uk>
"""
from __future__ import absolute_import, print_funct... | bthorne93/PySM_public | pysm/pysm.py | Python | mit | 30,303 | [
"Gaussian"
] | a5f505ec8fc5bcec5a91ce04a7982abd8b166f4c0cedf97ac0ed32ad50024ea1 |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2021 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This file is part of Psi4.
#
# Psi4 is free software; you can redistribute it and/or modify
#... | lothian/psi4 | psi4/driver/qcdb/libmintsbasissetparser.py | Python | lgpl-3.0 | 18,326 | [
"Gaussian",
"Psi4"
] | 0c083e5f329b6dbe83521e5d324021cb9cebe316b79ed0d363995538a2f13f99 |
# (c) 2013-2014, Michael DeHaan <michael.dehaan@gmail.com>
# Stephen Fromm <sfromm@gmail.com>
# Brian Coca <briancoca+dev@gmail.com>
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as publish... | wkeeling/ansible | lib/ansible/plugins/action/assemble.py | Python | gpl-3.0 | 6,412 | [
"Brian"
] | 42b69654c31e5fa513b6e379cbb6f8a28db6f90cda937a635cdc3ec4b7e50353 |
import unittest
import os
from netCDF4 import Dataset
from cis.data_io.gridded_data import make_from_cube, GriddedDataList
from cis.test.util.mock import make_dummy_2d_ungridded_data, make_mock_cube
from cis.test.integration_test_data import valid_cis_col_file, valid_cis_col_variable
from cis.data_io.write_netcdf impo... | cedadev/jasmin_cis | cis/test/integration/test_io/test_write_netcdf.py | Python | gpl-3.0 | 4,915 | [
"NetCDF"
] | 6935fefc38f03c2d98a75a28997b444c5c148e18ba43ed0f6f17dca2cdcc432f |
##############################################################################
# MDTraj: A Python Library for Loading, Saving, and Manipulating
# Molecular Dynamics Trajectories.
# Copyright 2012-2013 Stanford University and the Authors
#
# Authors: Robert McGibbon
# Contributors:
#
# MDTraj is free software: y... | rmcgibbo/mdtraj | mdtraj/geometry/hbond.py | Python | lgpl-2.1 | 18,311 | [
"MDTraj"
] | c7c237ff5bc9e82e69a2ae610a179ef2510d738bc77d810eb24613a8d795a26f |
import numpy as np
from ase.lattice import bulk
from gpaw import GPAW, PW, FermiDirac, MethfesselPaxton
a0 = 4.04
al = bulk('Al', 'fcc', a=a0)
cell0 = al.cell
for ecut in range(200, 501, 50):
al.calc = GPAW(mode=PW(ecut),
xc='PBE',
kpts=(8, 8, 8),
parallel=... | robwarm/gpaw-symm | doc/tutorials/lattice_constants/al.py | Python | gpl-3.0 | 757 | [
"ASE",
"GPAW"
] | c5550b4e76d2642d741db00f873ce660f21ba9d18aa3c10da73e2af4658e079f |
# python3
# Copyright 2018 DeepMind Technologies Limited. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless re... | deepmind/acme | acme/agents/tf/mcts/acting.py | Python | apache-2.0 | 3,992 | [
"VisIt"
] | a57e58a1e922cddd2950276b40f5bf251843b0d3ebfb53a123eb8a63cc73015d |
#!/usr/bin/env python3
import argparse
import common
import functools
import multiprocessing
import os
import os.path
import pathlib
import re
import subprocess
import stat
import sys
import traceback
import shutil
import paths
EXCLUDED_PREFIXES = (
"./generated/",
"./thirdparty/",
"./build",
"./.git/... | envoyproxy/envoy-wasm | tools/code_format/check_format.py | Python | apache-2.0 | 54,221 | [
"VisIt"
] | fc821a163a2f1e2e19cb51d34903652aca0c402c86f30ebce2ae85536b9138a8 |
import numpy as np
from sklearn.metrics.pairwise import pairwise_distances
import ConfigParser
from shape_plot import plot_samples
def elem_sympoly(lambdas, k):
''' Given a vector of lambdas and a maximum size k, determine the value of
the elementary symmetric polynomials:
E(l+1,n+1) = sum_{J \sub... | IDEALLab/domain_expansion_jmd_2017 | dpp.py | Python | mit | 4,312 | [
"Gaussian"
] | 1533a154444ec331bbbd93a119654b3ebf02ebf7fb93a010b1a4d45ad5151717 |
#!/usr/bin/env python
"""
filt.py
Functions for quickly filtering time-series of data.
Written by Brian Powell on 02/09/16
Copyright (c)2017 University of Hawaii under the MIT-License.
"""
import numpy as np
import seapy
import scipy.signal
def average_err(x, window=5):
"""
Generate a moving (boxca... | ocefpaf/seapy | seapy/filt.py | Python | mit | 5,192 | [
"Brian"
] | c3d9dbc17691f1d6fae0c9cc174d6624269ffe4b5237d4d1ecf74d77e658e50e |
import os
from itertools import groupby, imap
from functools import partial
from operator import attrgetter
import gzip
from jbio.alignment import *
from jbio.io.file import iterator_over_file_from_extension as ioffe
from jbio.io.blast import record_iterator as blast_record_iterator
from jbio.functional import com... | jgurtowski/jbio | jbio/test/alignment.py | Python | gpl-2.0 | 900 | [
"BLAST"
] | 779c113cea2983aa57b5c7f6c0f490c937c33bc5f872bfc99782695a5bbd0b1a |
# Profile the sweep
#
# Copyright (C) 2010-2011 Huang Xin
#
# See LICENSE.TXT that came with this file.
from __future__ import division
from StimControl.LightStim.Core import DefaultScreen
from StimControl.LightStim.LightData import dictattr
from StimControl.LightStim.FrameControl import FrameSweep
from StimControl.Li... | chrox/RealTimeElectrophy | StimControl/test/sweep_profile.py | Python | bsd-2-clause | 1,815 | [
"Gaussian"
] | c6b36b9c629872baa84b8fa16b2219150df9bb5ec55df308fc01812791af1469 |
# -*- coding: utf-8 -*-
# Copyright 2007-2016 The HyperSpy developers
#
# This file is part of HyperSpy.
#
# HyperSpy is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at... | MartialD/hyperspy | hyperspy/model.py | Python | gpl-3.0 | 74,937 | [
"Gaussian"
] | 202a3bfe3ed68d0b55bb4740feada5714b369eefd55615d78f7af79cb12b9bf6 |
""" PlottingClient is a client of the Plotting Service
"""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
__RCSID__ = "$Id$"
import tempfile
from DIRAC import S_OK, S_ERROR
from DIRAC.Core.Tornado.Client.ClientSelector import TransferClientSelector as Tran... | ic-hep/DIRAC | src/DIRAC/FrameworkSystem/Client/PlottingClient.py | Python | gpl-3.0 | 4,325 | [
"DIRAC"
] | db05df8bdb4c038f5cb1dfb5d1d809091f661f51820fa57121290732eff3c8df |
"""
This is used to test the ElasticSearchDB module. It is used to discover all possible changes of Elasticsearch api.
If you modify the test data, you have to update the test cases...
"""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
# TODO: move to pytes... | ic-hep/DIRAC | tests/Integration/Core/Test_ElasticsearchDB.py | Python | gpl-3.0 | 21,844 | [
"DIRAC"
] | b05f698a8f892811e9a73bf370cb7567bad74c795f0482512f50a1ab9bba2b8e |
#!/usr/bin/env python
import pyfits
from LCScommon import *
from pylab import *
import os
import mystuff as my
def loadmastertable(clustername):
infile='/home/rfinn/research/LocalClusters/MasterTables/'+clustername+'mastertable.fits'
tb=pyfits.open(infile)
tbdata=tb[1].data
tb.close()
self.agcflag... | rfinn/LCS | paper1code/LCSloadmaster.py | Python | gpl-3.0 | 8,623 | [
"Galaxy"
] | ff9549a97b55bbf1aa80d57e7d9d2f488212fa7629bca21544e170621e545e09 |
from enthought.mayavi.core.registry import registry
from enthought.mayavi.core.pipeline_info import PipelineInfo
from enthought.mayavi.core.metadata import FilterMetadata
from enthought.mayavi.core.metadata import SourceMetadata
# Metadata for the new filters we want to add
boundary_marker_editor = FilterMetadata(
... | rjferrier/fluidity | mayavi/site_mayavi.py | Python | lgpl-2.1 | 2,724 | [
"Mayavi"
] | 97134f6696627cd59af2c8bd8d2d77bfec88e9d0b4bee3f5c19b36699b834da6 |
import pyfftw
import numpy as np
from peak_detection import find_peak
class FFTCorrelator(object):
"""
An FFT Correlation Class for a PIV Evaluation of two frames
It uses the `pyfftw <https://hgomersall.github.io/pyFFTW/>`_ library for performant FFT.
This class is also responsible for calculating the... | jr7/pypiv | pypiv/piv/fft_correlator.py | Python | bsd-3-clause | 3,433 | [
"Gaussian"
] | 52c51abd19336127bd572a1ea02c5f92bd7c3c1f57685d16188688481cca7350 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
This module provides classes used to define a MD trajectory.
"""
import itertools
import os
import warnings
from fnmatch import fnmatch
from typing import List, Union, Sequence
import numpy as np
from mon... | gVallverdu/pymatgen | pymatgen/core/trajectory.py | Python | mit | 22,192 | [
"VASP",
"pymatgen"
] | 8b313e68ebd441719cf88b0528b82426b131d8e08750da922f4fb799e2463290 |
"""
Purpose: To implement some alternative techniques for periodicity quantification
to compare with TDA
"""
import numpy as np
import scipy.io as sio
import sys
from CSMSSMTools import *
from VideoTools import *
import scipy.stats
import scipy.signal
import scipy.ndimage
def getCutlerDavisFrequencyScore(I, doPlot = F... | ctralie/SlidingWindowVideoTDA | AlternativePeriodicityScoring.py | Python | apache-2.0 | 11,915 | [
"Gaussian"
] | a9b62a85134ecc46e7ec1293331fa6114b8e9f0e78788a4693896c477f3ac3c1 |
# Author: Virgile Fritsch <virgile.fritsch@inria.fr>
#
# License: BSD 3 clause
import numpy as np
from . import MinCovDet
from ..utils.validation import check_is_fitted, check_array
from ..utils.validation import _deprecate_positional_args
from ..metrics import accuracy_score
from ..base import OutlierMixin
class El... | xuewei4d/scikit-learn | sklearn/covariance/_elliptic_envelope.py | Python | bsd-3-clause | 8,074 | [
"Gaussian"
] | 45378323f739600c98ac5099fd1af74920779f50ad074f018c018316efe7257d |
#!/usr/bin/env python3
# -*-coding:Utf-8 -*
import pyfits
import numpy as np
import matplotlib.pyplot as plt
from scipy.interpolate import interp1d
"""Script used to load SMF from Davizon+17 paper with uncertainties and marke
abundance matching with it
"""
redshifts = np.array([0.2, 0.5, 0.8, 1.1, 1.5, 2, 2.5, 3, 3... | Gorbagzog/StageIAP | IaryDavidzonSMF_wrong.py | Python | gpl-3.0 | 3,498 | [
"Galaxy"
] | 1de0601229bbca25e0277554fd557fcfac7907b55fb543808aac6c1403127d89 |
#!/usr/bin/python
#
# Created on Aug 25, 2016
# @author: Gaurav Rastogi (grastogi@avinetworks.com)
# Eric Anderson (eanderson@avinetworks.com)
# module_check: supported
# Avi Version: 17.1.2
#
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the te... | kbrebanov/ansible | lib/ansible/modules/network/avi/avi_vsvip.py | Python | gpl-3.0 | 4,585 | [
"VisIt"
] | 1fd929bbd70506dc352903bd68eaad6a0e66ff60b7a68d948119128af7dcb0a3 |
##############################################################################
# pymbar: A Python Library for MBAR
#
# Copyright 2010-2014 University of Virginia, Memorial Sloan-Kettering Cancer Center
#
# Authors: Michael Shirts, John Chodera
# Contributors: Kyle Beauchamp
#
# pymbar is free software: you can redistri... | kyleabeauchamp/pymbar | pymbar/exp.py | Python | lgpl-2.1 | 9,273 | [
"Gaussian"
] | 1462247ff65aeb9fc0723aa7cd5ed89cd9d1db9c8505f903779f3501c43cdd4b |
import logging
from parmed.unit import nanometers, picoseconds
import numpy as np
logger = logging.getLogger('InterMolLog')
class GromacsGroParser(object):
"""GromacsGroParser reads and writes Gromacs .gro files
A .gro file also contains some topological information, such as elements and
residue names,... | shirtsgroup/InterMol | intermol/gromacs/grofile_parser.py | Python | mit | 4,955 | [
"Gromacs",
"LAMMPS"
] | a0d7dadf68015cdfedcd87ddf8aa303539fa9bc3b29d702280db5c306f28b392 |
import click
import parsley
from visitor import Visitor
class Heading(object):
def __init__(self, text, underline):
self.text = text
self.ctype = underline[0]
class Entry(object):
def __init__(self, text, ctype):
self.text = text
self.ctype = ctype
@property
def done... | mbr/git-todo | git_todo/parser.py | Python | mit | 1,948 | [
"VisIt"
] | d5d0caa8c33a5f8cd15aa8f4eef9710d5e76fdea206813bf47b9643a55046239 |
from __future__ import division, print_function, unicode_literals
# This code is so you can run the samples without installing the package
import sys
import os
sys.path.insert(0, os.path.join(os.path.dirname(__file__), '..'))
#
testinfo = "f 10 0.033, s, f 20 0.033, s, f 30 0.033, s, f 30 0.033, s, q"
tags = "particl... | dangillet/cocos | test/test_particle_galaxy.py | Python | bsd-3-clause | 978 | [
"Galaxy"
] | 62902e1d4d1d01c43cac5e864d4e11d7b2593ab85548a00611a705e6aad7beff |
def agts(queue):
queue.add('H2.agts.py',
walltime=25,
ncpus=8,
creates=['H2-emt.csv', 'H2-gpaw.csv'])
if __name__ == "__main__":
from ase.optimize.test.H2 import *
| qsnake/gpaw | doc/devel/ase_optimize/H2.agts.py | Python | gpl-3.0 | 215 | [
"ASE",
"GPAW"
] | 6536e14abf56e548a84621368c33820fcce208217ad30deefb46ab1f4158dc63 |
# $HeadURL: $
''' DowntimePolicy module
'''
from DIRAC import S_OK
from DIRAC.ResourceStatusSystem.PolicySystem.PolicyBase import PolicyBase
__RCSID__ = '$Id: $'
class DowntimePolicy( PolicyBase ):
'''
The DowntimePolicy checks for downtimes, scheduled or ongoing,... | Sbalbp/DIRAC | ResourceStatusSystem/Policy/DowntimePolicy.py | Python | gpl-3.0 | 1,768 | [
"DIRAC"
] | b5eb16dcc2523ca902acfbe3f08545b62a8c866d3033574eb45882b4d1ddc5de |
import os
import struct
from cStringIO import StringIO
import vstruct
import vstruct.defs.pe as vs_pe
import ordlookup
IMAGE_DLLCHARACTERISTICS_RESERVED_1 = 1
IMAGE_DLLCHARACTERISTICS_RESERVED_2 = 2
IMAGE_DLLCHARACTERISTICS_RESERVED_4 = 4
IMAGE_DLLCHARACTERISTICS_RESERVED_8 = 8
IMAGE_DLLCHARACTE... | HackerTool/vivisect | PE/__init__.py | Python | apache-2.0 | 38,449 | [
"VisIt"
] | f886b5d0c436259a5a3351adc0073d303477f4530b3c47d583e46ada2c72b56a |
# Import Google TransitFeed
import transitfeed
from transitfeed import ServicePeriod
# Version
mjts_version = "0.0.2"
# New Schedule
schedule = transitfeed.Schedule()
# Create Agency
schedule.AddAgency("Moose Jaw Transit Service", "http://www.moosejaw.ca/?service=city-of-moose-jaw-transit-division",
... | theshka/MJTS_GTFS | src/generate_feed.py | Python | mit | 26,420 | [
"MOOSE"
] | 9b66dce408a1cab9c6351688c6bbec1e28abc0ddb5f1c05a9f0bfebfde8b68b5 |
from __future__ import absolute_import
import sys,os
import numpy as np
import pandas as pd
sys.path.append('/global/project/projectdirs/openmsi/jupyterhub_libs/anaconda/lib/python2.7/site-packages')
from rdkit import Chem
from rdkit.Chem import PandasTools
sdf_file = '/project/projectdirs/openmsi/projects/compound_dat... | metabolite-atlas/metatlas | metatlas/interfaces/compounds/load_chembl.py | Python | bsd-3-clause | 468 | [
"RDKit"
] | 39a6074c3940e5abe2627d9e0289fd761290de2fb5d8671e4c7a340ade78fd03 |
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RMsnbase(RPackage):
"""Base Functions and Classes for Mass Spectrometry and Proteomics
... | LLNL/spack | var/spack/repos/builtin/packages/r-msnbase/package.py | Python | lgpl-2.1 | 2,903 | [
"Bioconductor"
] | d576bc36609eda824b94239efc7e9d4822cad8a308937f81dee6f81664d6fd1f |
from SimpleCV.base import np, warnings
from SimpleCV.ImageClass import Image
class DFT:
"""
**SUMMARY**
The DFT class is the refactored class to crate DFT filters which can
be used to filter images by applying Digital Fourier Transform. This
is a factory class to create various DFT filters.
*... | jayrambhia/SimpleCV2 | SimpleCV/DFT.py | Python | bsd-3-clause | 28,461 | [
"Gaussian"
] | 28302604b51608b377e56bf216c7c8e6ce0ecae3052bb5afe1dcdab2537dd132 |
###########################################################################
#
# Copyright 2020 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# https://www.apache.org/l... | google/starthinker | dags/email_dv360_to_bigquery_dag.py | Python | apache-2.0 | 5,664 | [
"VisIt"
] | 55710ee201ae973383cfa26f85feecb591114bfcc5167391f9dcfc43d530d7c1 |
# Copyright 2013 the V8 project authors. All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are
# met:
#
# * Redistributions of source code must retain the above copyright
# notice, this list of conditi... | macchina-io/macchina.io | platform/JS/V8/v8/test/benchmarks/testcfg.py | Python | apache-2.0 | 6,637 | [
"Gaussian"
] | 42d55b3e7681d8912a38c805764c57758d1b45bfe0dccc3427d69c3fb68db063 |
import numpy as np
import ase.units as units
from gpaw import restart, GPAW
from gpaw.poisson import PoissonSolver
from gpaw.dipole_correction import DipoleCorrection
energies = []
for name in ['zero', 'periodic', 'corrected']:
if name == 'corrected':
calc = GPAW(name, txt=None,
poisson... | robwarm/gpaw-symm | doc/tutorials/dipole_correction/check.py | Python | gpl-3.0 | 805 | [
"ASE",
"GPAW"
] | 7e6c8927dbf365d9f71fa2ed6e75e6728fb20d4d13065eaf609caeb2235ce04f |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2018 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This file is part of Psi4.
#
# Psi4 is free software; you can redistribute it and/or modify
#... | amjames/psi4 | psi4/driver/qcdb/molparse/to_schema.py | Python | lgpl-3.0 | 4,197 | [
"Psi4"
] | 7c8be9b20ef3b75dd7b31ba5274923e91b100dbd04cbb1e03a58261c87d03c57 |
#pylint: disable=C0111
#pylint: disable=W0621
from lettuce import world, step
from common import create_studio_user
from django.contrib.auth.models import Group
from auth.authz import get_course_groupname_for_role, get_user_by_email
from nose.tools import assert_true
PASSWORD = 'test'
EMAIL_EXTENSION = '@edx.org'
@... | wwj718/edx-video | cms/djangoapps/contentstore/features/course-team.py | Python | agpl-3.0 | 5,945 | [
"VisIt"
] | 7e4ea27b54295b3b93b451b2810c2f7367974f32a1094f13b0133ae252c8217e |
#!/usr/bin/env python
# -*- coding: utf-8
"""
Example generation modified from the scikit learn
Generate the rst files for the examples by iterating over the python
example files.
Files that generate images should start with 'plot'
"""
from time import time
import os
import shutil
import traceback
import glob
impor... | effigies/mne-python | doc/sphinxext/gen_rst.py | Python | bsd-3-clause | 33,312 | [
"Mayavi"
] | a987ac2236849293fdc573e7db4aa2624c75cede7407fed6a67bdc30cbd13358 |
"""
=================================================
Deterministic Tracking with EuDX on Tensor Fields
=================================================
In this example we do deterministic fiber tracking on Tensor fields with EuDX
[Garyfallidis12]_.
This example requires to import example `reconst_dti.py` to run. E... | StongeEtienne/dipy | doc/examples/tracking_eudx_tensor.py | Python | bsd-3-clause | 3,897 | [
"VTK"
] | d352f9123da3613e9930159f4271019beb4610e9655f50e41dcd75bcedc319b4 |
from __future__ import absolute_import
from .core import MaskedLayer
from .. import backend as K
class GaussianNoise(MaskedLayer):
'''
Corruption process with GaussianNoise
'''
def __init__(self, sigma, **kwargs):
super(GaussianNoise, self).__init__(**kwargs)
self.sigma = sigma
... | valexandersaulys/airbnb_kaggle_contest | venv/lib/python3.4/site-packages/keras/layers/noise.py | Python | gpl-2.0 | 1,887 | [
"Gaussian"
] | 5305d87e803dbd03dd44050246452ceb8dba64903a80d6206ffbedc5d2a0df75 |
from tests import base
from tests import factories as f
outbox_len = 0
password = '123123'
def test_workshop_create(base_url, browser, outbox):
"""
"""
f.create_usertype(slug='tutor', display_name='tutor')
poc_type = f.create_usertype(slug='poc', display_name='poc')
state = f.create_state()
u... | pythonindia/wye | tests/functional/workshop/test_create_workshop.py | Python | mit | 1,933 | [
"VisIt"
] | 25922a988fde708e2e7b5312e24ff24c434576166c1939bbe33db21313773718 |
# -*- coding: utf-8 -*-
# Form implementation generated from reading ui file '/home/grossmj/PycharmProjects/gns3-gui/gns3/ui/about_dialog.ui'
#
# Created: Mon Mar 23 22:22:17 2015
# by: PyQt4 UI code generator 4.10.4
#
# WARNING! All changes made in this file will be lost!
from PyQt4 import QtCore, QtGui
try:
... | noplay/gns3-gui | gns3/ui/about_dialog_ui.py | Python | gpl-3.0 | 112,795 | [
"Brian",
"CRYSTAL",
"Dalton",
"GAMESS",
"MOOSE"
] | f198432deff9cf2c919fd580bce3f407b18770c6496e622cd1e083e0f2ef1a01 |
# -*- coding: utf-8 -*-
# Copyright: (c) 2020-2021, Ansible Project
# GNU General Public License v3.0+ (see COPYING or https://www.gnu.org/licenses/gpl-3.0.txt)
"""A facade for interfacing with multiple Galaxy instances."""
from __future__ import (absolute_import, division, print_function)
__metaclass__ = type
import... | renard/ansible | lib/ansible/galaxy/collection/galaxy_api_proxy.py | Python | gpl-3.0 | 7,459 | [
"Galaxy"
] | a5605688b5452a754f3e08e22869480ac492db754e80cc6032f9fe13045bc6a9 |
# coding=utf-8
"""Auto pull request migrations information plugin"""
import re
from git import Repo
from . import MASTER_BRANCH
from .base import AutoPullRequestPluginInterface, section_order
from ..nodes import DescriptionNode, NodeList, NumberedList, SectionNode
MIGRATION_FOLDER = 'migration_scripts'
MIGRATION_SC... | gxx/auto_pull_request | auto_pull_request/plugins/migrations_info.py | Python | gpl-2.0 | 2,145 | [
"ASE"
] | e72baf2ad678897478eb9a9b053a390a024938355462155e666d8e8ce899b539 |
#!/usr/bin/python
# http://www.deheus.net/petrik/blog/2005/11/20/creating-a-wikipedia-watchlist-rss-feed-with-python-and-twill/
import sys, string, datetime, time, os, re, stat
import twill
import twill.commands as t
import gd
temp_html = "/tmp/wikipedia.html"
rss_title = "Wikipedia watchlist"
rss_link = "http://en.w... | SuriyaaKudoIsc/wikia-app-test | extensions/SwiftMedia/smtest.py | Python | gpl-2.0 | 5,519 | [
"VisIt"
] | 24b80fc52d7890ca4ff61159c0ec585782e03dd4234bc5ad3b6c1b8a4de9f75c |
#!/usr/bin/env python
#
# Copyright 2007 Google Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law o... | yencarnacion/jaikuengine | .google_appengine/google/appengine/tools/sdk_update_checker.py | Python | apache-2.0 | 14,498 | [
"VisIt"
] | 1b14c6c0859ff3ef935b6cd975090fe0aa4d9c885a34bdd6f014eaaa6b3d3f83 |
##############################################################################
# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-64... | EmreAtes/spack | var/spack/repos/builtin/packages/r-topgo/package.py | Python | lgpl-2.1 | 2,469 | [
"Bioconductor"
] | d4a0dc142efabb88a06ce2130cbbe6f25f0ff6d1084aca79e39da635935274d5 |
# -*- coding: utf-8 -*-
"""
@author: c.zambaldi
"""
import os, sys
import math
try:
import numpy as np
except:
np = None
import time
from sketch import Sketch
#from msc.tools import MSC_TOOLS
from tools import Tools
#class Proc(Sketch, MSC_TOOLS):
class Proc(Sketch, Tools):
""" This class defines the co... | stabix/stabix | third_party_code/python/msc/proc/base.py | Python | agpl-3.0 | 19,911 | [
"CRYSTAL"
] | d3ec07ea89daa9c2bd3331a8c26f19eba4318383ec73a9c787a2ea8b88e5ad61 |
#!/usr/bin/env python
import os
import sys
import fnmatch
import fileinput
from subprocess import call
import re
def main(Main_Folder):
geneid = re.compile('Vocar[a-zA-Z0-9]*m\.g')
for root, dirnames, filenames in os.walk(Main_Folder):
for filename in fnmatch.filter(filenames,'*.count'):
... | Luminarys/Bioinformatics | Scripts/ExtractStuff.py | Python | gpl-2.0 | 1,040 | [
"HTSeq"
] | 5e0389cc93fc2d3ee2d191d4491bd9c78d007b824efb69891286686bdff12a7c |
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