text stringlengths 12 1.05M | repo_name stringlengths 5 86 | path stringlengths 4 191 | language stringclasses 1
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import coverage.plugin
import hy.importer
import ast
import os.path
class HyCoveragePlugin(coverage.plugin.CoveragePlugin):
"""The main entry point for the coverage plugin. This is responsible
for determining which modules it understands (i.e. all Hy
modules), and acts as an Abstract Factory to instantiat... | timmartin/hy-coverage | hy_coverage_plugin/hy_coverage.py | Python | mit | 2,500 | [
"VisIt"
] | fa51aae832940bcee7839a2cb800bf24bad106e066ab88a1e7e867933db7a7f8 |
# -*- coding: utf-8 -*-
"""
Shortest path algorithms for weighed graphs.
"""
__author__ = """\n""".join(['Aric Hagberg <hagberg@lanl.gov>',
'Loïc Séguin-C. <loicseguin@gmail.com>',
'Dan Schult <dschult@colgate.edu>'])
# Copyright (C) 2004-2011 by
# Aric Hagb... | ReganBell/QReview | networkx/algorithms/shortest_paths/weighted.py | Python | bsd-3-clause | 30,414 | [
"VisIt"
] | a9e05399c9840be57184766af38a48a7e84d8ec871dc046db644d30fdced80d9 |
# coding: utf-8
"""
Integration Tests
~~~~~~~~~~~~~~~~~
"""
import sys
import re
import argparse
import iocapture
import mock
import pytest
import argh
from argh.exceptions import AssemblingError
from .base import DebugArghParser, get_usage_string, run, CmdResult as R
@pytest.mark.xfail(reason='TODO')
def test_gue... | neithere/argh | test/test_integration.py | Python | gpl-3.0 | 21,166 | [
"MOOSE"
] | 72cb057c17b038fd93a38e27c20dd6bbd04fe43f91cde01fbea1673e56cfdf0c |
# -*- coding: utf-8 -*-
"""
pygments.lexers.boa
~~~~~~~~~~~~~~~~~~~~
Lexers for the Boa language.
:copyright: Copyright 2006-2019 by the Pygments team, see AUTHORS.
:license: BSD, see LICENSE for details.
"""
import re
from pygments.lexer import RegexLexer, words
from pygments.toke... | unreal666/outwiker | plugins/source/source/pygments/lexers/boa.py | Python | gpl-3.0 | 3,862 | [
"VisIt"
] | ffedf7339d9f430f69b05e8fd0ff1f2f5784cb6a1507654bfd953f2c05cf9e18 |
#!/usr/bin/python
# Import standard Python modules
import os,sys
# Debug info
print 'Python version: %s' % unicode(sys.version_info)
# In order to find our custom data files, make sure that we are in the directory
# containing the executable.
oldworkingdir = os.getcwdu()
os.chdir(os.path.abspath(os.path.dirname(sys.... | BoldingBruggeman/gotm | gui.py/batch.py | Python | gpl-2.0 | 6,457 | [
"NetCDF"
] | 9809f1df7d7b64f14fb81f19bd9ff0a562356a905502525de6c2b27d51622681 |
# -*- coding: utf-8 -*-
from __future__ import unicode_literals
from django.db import models, migrations
import uuid
class Migration(migrations.Migration):
dependencies = [
('visit', '0054_auto_20150811_1304'),
]
operations = [
migrations.CreateModel(
name='InvolvementType',... | koebbe/homeworks | visit/migrations/0055_auto_20150815_0213.py | Python | mit | 1,129 | [
"VisIt"
] | a183be4bd0f5af66845b207f1985b23898db7b4e139e52470bb9a8efa7bf38c5 |
#!/usr/bin/env python
from active_worker.task import task
import yaml
import matplotlib
matplotlib.use('Agg')
import time
import os
import glob
import numpy as np
from task_types import TaskTypes as tt
import helper_functions
@task
def microcircuit_task(configuration_file,
simulation_duration,
... | INM-6/UP-Tasks | NEST/microcircuit_task/microcircuit_task.py | Python | gpl-2.0 | 12,026 | [
"NEURON"
] | fd56b77e063fbc94c8ad8e65d8c14ff7fa9585bebf7f292e03333afa0350bca7 |
# AvsP - an AviSynth editor
# Copyright 2007 Peter Jang
# http://avisynth.nl/users/qwerpoi
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License, or
# (at your op... | AvsPmod/AvsPmod | pyavs_avifile.py | Python | gpl-2.0 | 15,204 | [
"VisIt"
] | 7b6af904f5d2b62f63eee0c3482dec46f93df0c7c419cdb26aa5da8fcedc473a |
#pylint: disable=missing-docstring
#* This file is part of the MOOSE framework
#* https://www.mooseframework.org
#*
#* All rights reserved, see COPYRIGHT for full restrictions
#* https://github.com/idaholab/moose/blob/master/COPYRIGHT
#*
#* Licensed under LGPL 2.1, please see LICENSE for details
#* https://www.gnu.org/... | nuclear-wizard/moose | python/chigger/base/ResultGroup.py | Python | lgpl-2.1 | 2,059 | [
"MOOSE"
] | cec0fb77e0e42b8169c86a8ceb26e959f2fd5b611c2c5442bfcc3f3baf000b4f |
import numpy as np
import mdtraj as md
from mdtraj.testing import eq
random = np.random.RandomState(0)
def compute_neighbors_reference(traj, cutoff, query_indices, haystack_indices=None):
if haystack_indices is None:
haystack_indices = range(traj.n_atoms)
# explicitly enumerate the pairs of query-hay... | dwhswenson/mdtraj | tests/test_neighbors.py | Python | lgpl-2.1 | 1,848 | [
"MDTraj"
] | 7a7d790e52e732105ec932a911dcf86a7fff4fac135f6fdb40ae038229729d3f |
#!/usr/bin/env python
import sys
import os
import os.path
if len(sys.argv)!=2:
print("Usage:", sys.argv[0], "simu_directory")
sys.exit(0)
import numpy as np
from io import StringIO
# Open lammps log file to extract thermodynamic observables
logfile = open(os.path.join(os.getcwd(),sys.argv[1], 'log.lammps'))... | pdebuyl/ljrr | check_T.py | Python | bsd-3-clause | 966 | [
"LAMMPS"
] | f101d283c15fad6f993cba9ccfc0391959c6706e41c8844dbfc72fa5cbd0ad0c |
"""
Tests the forum notification views.
"""
import json
import logging
from datetime import datetime
from unittest.mock import ANY, Mock, call, patch
import ddt
import pytest
from django.http import Http404
from django.test.client import Client, RequestFactory
from django.test.utils import override_settings
from dja... | edx/edx-platform | lms/djangoapps/discussion/tests/test_views.py | Python | agpl-3.0 | 91,300 | [
"VisIt"
] | d6506f971cd52545c25b670970f1afe0ba57f9a41207b0346f0d4f15ca1e6ea0 |
#!/usr/bin/env python
##################################################
## DEPENDENCIES
import sys
import os
import os.path
try:
import builtins as builtin
except ImportError:
import __builtin__ as builtin
from os.path import getmtime, exists
import time
import types
from Cheetah.Version import MinCompatib... | MOA-2011/e2openplugin-OpenWebif | plugin/controllers/views/web/mediaplayeradd.py | Python | gpl-2.0 | 5,225 | [
"VisIt"
] | 90680c198fdf2710b78d0be9683cd77ce61b74be73ad7c9d81e5657f2441a7f6 |
#!/usr/bin/env python
__author__ = 'Xiaocheng Tang and Ted Ralphs'
__maintainer__ = 'Ted Ralphs'
__email__ = 'ted@lehigh.edu'
__version_ = '1.0.0'
__url__ = 'https://github.com/tkralphs/GoogleDriveScripts'
# Last modified 2/17/2016 Ted Ralphs
# Visit this URL to download client secret file
# https... | tkralphs/GoogleDriveScripts | DriveSort.py | Python | mit | 11,500 | [
"VisIt"
] | f16fb7b8cf1f7f7bc6e37f5a4e81bfa58fa7aafd0670463c8b8ba53afa3b7950 |
# Copyright (c) 2017-2019 Uber Technologies, Inc.
# SPDX-License-Identifier: Apache-2.0
import logging
from collections import namedtuple
import pytest
import torch
import pyro.distributions as dist
from pyro.contrib.gp.kernels import RBF, Cosine, Matern32, WhiteNoise
from pyro.contrib.gp.likelihoods import Gaussian... | uber/pyro | tests/contrib/gp/test_models.py | Python | apache-2.0 | 15,042 | [
"Gaussian"
] | ce7c7ccaed8c095c26da5a30966f0075812901b67c7b6fde61a5f8909bbe4c57 |
# coding: utf-8
from __future__ import unicode_literals
"""
This module implements various transmuter classes.
Transmuters are essentially classes that generate TransformedStructures from
various data sources. They enable the high-throughput generation of new
structures and input files.
It also includes the helper f... | rousseab/pymatgen | pymatgen/alchemy/transmuters.py | Python | mit | 16,781 | [
"VASP",
"pymatgen"
] | 25718fe3915ea2633f8b6b0fb307e79162cbb2b3736a01ecc1ad0883dca7bfa5 |
#!/usr/bin/env python
import vtk
from vtk.test import Testing
from vtk.util.misc import vtkGetDataRoot
VTK_DATA_ROOT = vtkGetDataRoot()
pts = vtk.vtkPoints()
pts.SetNumberOfPoints(22)
pts.SetPoint(0,0,0,0)
pts.SetPoint(1,1,0,0)
pts.SetPoint(2,2,0,0)
pts.SetPoint(3,3,0,0)
pts.SetPoint(4,4,0,0)
pts.SetPoint(5,5,0,0)
pts... | HopeFOAM/HopeFOAM | ThirdParty-0.1/ParaView-5.0.1/VTK/Filters/Core/Testing/Python/TestTriangleFilter.py | Python | gpl-3.0 | 2,623 | [
"VTK"
] | d94be52e1a7b69d715dfdf8fb578e63be87c451b6deb4f3631a64735d28b9689 |
from __future__ import print_function
import ast
import os
import codecs
from setuptools import setup
class VersionFinder(ast.NodeVisitor):
def __init__(self):
self.version = None
def visit_Assign(self, node):
if node.targets[0].id == '__version__':
self.version = node.value.s
d... | jezdez/django-configurations | setup.py | Python | bsd-3-clause | 2,117 | [
"VisIt"
] | 3b47a2d990c81fb33f3bb7a973d5608c33f2f75a4450c2f46871ff0ac79ac8a5 |
import unittest
import itertools
from functools import partial
import numpy
from tvtk.api import tvtk
from simphony.cuds.mesh import Mesh, Point, Face, Edge, Cell
from simphony.core.data_container import DataContainer
from simphony.core.cuba import CUBA
from simphony.testing.abc_check_mesh import (
CheckMeshConta... | simphony/simphony-mayavi | simphony_mayavi/cuds/tests/test_vtk_mesh.py | Python | bsd-2-clause | 9,374 | [
"VTK"
] | 9dd8d28fa48687b2bed921bc685856f34b2fdc1f7461b4bc032e55eb20f08998 |
########################################################################
# File : CLI.py
# Author : Andrei Tsaregorodtsev
########################################################################
""" CLI is the base class for all the DIRAC consoles ( CLIs ). It contains
several utilities and signal handlers of ge... | yujikato/DIRAC | src/DIRAC/Core/Base/CLI.py | Python | gpl-3.0 | 3,675 | [
"DIRAC"
] | 00aaac4323daaeb2904bae6efb8270776d4fe37010331cce1ff0e80d11d7be78 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
#
# Copyright (c) 2014 Brian McClure
#
# django-media-helper is free software under terms of the MIT License.
#
# Fork of django-cleanup
from setuptools import setup, find_packages
description = """# **django-media-helper** #
When dealing with content from unacquainted... | brmc/django-media-helper | setup.py | Python | mit | 1,794 | [
"Brian"
] | 76d0e0cb84bdd800be36c4c8b5569ff771ad37ad062c11c70303104add928140 |
# -*- coding: utf-8 -*-
import ast
import base64
import csv
import glob
import itertools
import logging
import operator
import datetime
import hashlib
import os
import re
import simplejson
import time
import urllib2
import xmlrpclib
import zlib
from xml.etree import ElementTree
from cStringIO import StringIO
import b... | mrshelly/openerp71313 | openerp/addons/web/controllers/main.py | Python | agpl-3.0 | 66,071 | [
"VisIt"
] | fc5362f8591584fb90b20b1696016d47b5d729f26433f070a5334a1f7ba20e7d |
#!/usr/bin/env python3
# Coptyright 2016 (c) Brian McKean
'''
File name: set_host_os.py
Author: Brian McKean
Date created: 10/16/2016
Python Version: 3.5
input: a list of ip addresses, string
input: a keyfile for accessing AWS
output: string modified to instance:OS pair
dependencies:
... | co-bri/quevedo | v2_scripts/set_host_os.py | Python | mit | 2,899 | [
"Brian"
] | 90d1e200534f7d63c7406b88c53bcbe93e044840047fbb17f92ccdf2dec977f9 |
from castle.cms import registration
from castle.cms.utils import get_email_from_address
from castle.cms.utils import send_email
from castle.cms.utils import verify_recaptcha
from castle.cms.widgets import ReCaptchaFieldWidget
from plone.app.users.browser.register import RegistrationForm as BaseRegistrationForm
from plo... | castlecms/castle.cms | castle/cms/browser/registration.py | Python | gpl-2.0 | 10,263 | [
"VisIt"
] | 5daff79f5307d397128448059e8f42ef9f167452f7a3cd82af025ed941ecfc05 |
#!/usr/bin/env python
# -*- coding: UTF-8 -*-
# Python 3.6.8
##########################################################################################
# Armoured Commander #
# The World War II Tank Commander Roguelike ... | sudasana/armcom | armcom.py | Python | gpl-3.0 | 572,525 | [
"BLAST",
"Firefly"
] | 394d407fa6c733d7ad67c3f5bbf2cb1873475f3ec2b0821c03158c56c6c19207 |
# -*- coding: utf-8 -*-
# Copyright (c) 2013-2014 LOGILAB S.A. (Paris, FRANCE) <contact@logilab.fr>
# Copyright (c) 2013-2014 Google, Inc.
# Copyright (c) 2014-2017 Claudiu Popa <pcmanticore@gmail.com>
# Copyright (c) 2014 Cosmin Poieana <cmin@ropython.org>
# Copyright (c) 2014 Vlad Temian <vladtemian@gmail.com>
# Copy... | AtomLinter/linter-pylama | bin/deps/pylint/checkers/stdlib.py | Python | mit | 12,544 | [
"VisIt"
] | cbfe63408816a049730b04c40481ad65731bb49ad2c759f19387f939ec32cdc3 |
#!/usr/bin/env python
# Copyright 2014-2021 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# U... | sunqm/pyscf | pyscf/fci/selected_ci_spin0.py | Python | apache-2.0 | 7,596 | [
"PySCF"
] | 3863569a49cbdb2c8e39edc8f868aca843250f096b1759e58f82e95422956860 |
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distribu... | jarrodmcc/OpenFermion | src/openfermion/tests/_lih_integration_test.py | Python | apache-2.0 | 6,229 | [
"Psi4"
] | aa8fa19bb148f979135cf74217ee58e7e1cb59ba1a5fa1dfb21226feb25ab371 |
# Copyright (C) 2012,2013
# Max Planck Institute for Polymer Research
# Copyright (C) 2008,2009,2010,2011
# Max-Planck-Institute for Polymer Research & Fraunhofer SCAI
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the terms of t... | capoe/espressopp.soap | src/Int3D.py | Python | gpl-3.0 | 3,721 | [
"ESPResSo"
] | bed7ef5dbdc76889c4224314267ef11d95035e96b5892901833958e806abfdf0 |
"""
This module gathers tree-based methods, including decision, regression and
randomized trees. Single and multi-output problems are both handled.
"""
# Authors: Gilles Louppe <g.louppe@gmail.com>
# Peter Prettenhofer <peter.prettenhofer@gmail.com>
# Brian Holt <bdholt1@gmail.com>
# Noel Da... | manhhomienbienthuy/scikit-learn | sklearn/tree/_classes.py | Python | bsd-3-clause | 70,831 | [
"Brian"
] | 2fda80a9fe831b44eb9d370abc18612197854841e95d40a6a683beeef5167016 |
__author__ = 'Victoria'
from src.common.Observable import *
from src.game.AttackSpell import *
from random import *
class HeroState(object):
def __init__(self, name):
self._name = name
super(HeroState, self).__init__()
def north(self): pass
def south(self): pass
def attack(self): pass
... | victorianorton/SimpleRPGGame | src/game/SimpleGame.py | Python | mit | 6,900 | [
"VisIt"
] | 379302933ca97feb3737c645aaa7d8b61656b4750236d001982b93a1522f5696 |
import unittest
import numpy as np
import pysal
#import pysal.spreg as EC
from scipy import sparse
from pysal.contrib.handler import Model
from functools import partial
OLS = partial(Model, mtype='OLS')
PEGP = pysal.examples.get_path
class TestOLS(unittest.TestCase):
def setUp(self):
db = pysal.open(PEG... | TaylorOshan/pysal | pysal/contrib/handler/tests/test_ols_sparse.py | Python | bsd-3-clause | 4,665 | [
"COLUMBUS"
] | 59398de822e1743ff5d60df9141818317850823e328d3e8c531e9f7c7af62340 |
# -*- coding: utf-8 -*-
# 145. Binary Tree postorder Traversal
#
# Given a binary tree, return the postorder traversal of its nodes' values.
#
# For example:
# Given binary tree {1,#,2,3},
# 1
# \
# 2
# /
# 3
# return [1,2,3].
#
# Note: Recursive solution is trivial, could you do it iteratively?
#
... | gengwg/leetcode | 145_binary_tree_postorder_traversal.py | Python | apache-2.0 | 2,759 | [
"VisIt"
] | 335c899e3f0f6b8893aeb11364d41e8e26a7e93ff3b71cfa552232ea2e5e959b |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
from __future__ import unicode_literals
import unittest
import os
import json
from io import open
from pymatgen.electronic_structure.bandstructure import Kpoint
from pymatgen import Lattice
from pymatgen.elec... | migueldiascosta/pymatgen | pymatgen/electronic_structure/tests/test_bandstructure.py | Python | mit | 8,456 | [
"pymatgen"
] | da4b07b57b3835560d36dce513ffdc2371cc858a3089a97385756b0799fc08ab |
class node(object):
"""
This class represents a node in the AST built while parsing command lines.
It's basically an object container for various attributes, with a slightly
specialised representation to make it a little easier to debug the parser.
"""
def __init__(self, **kwargs):
asse... | idank/bashlex | bashlex/ast.py | Python | gpl-3.0 | 7,080 | [
"VisIt"
] | 24ae9d556f9d8afc6e1339366f7cf62745465ac0bfccccf96ef211f49ea16ecf |
import numpy as np
from mpl_toolkits.basemap import pyproj
from datetime import datetime
try:
import netCDF4 as netCDF
except:
import netCDF3 as netCDF
import pyroms
class BGrid_POP(object):
"""
BGrid object for POP
"""
def __init__(self, lon_t, lat_t, lon_u, lat_u, angle, h_t, h_u, z_t, z_w, na... | dcherian/pyroms | pyroms_toolbox/pyroms_toolbox/BGrid_POP/BGrid_POP.py | Python | bsd-3-clause | 2,079 | [
"NetCDF"
] | bbd932cfc67078858e8c42297cbb9ed3676cfb4cde36834a8e22732bb893e3b0 |
#!/usr/bin/env python
#
# A basic functional test of the total impact API
#
import urllib2
import urllib
import json
import time
import sys
import pickle
from pprint import pprint
from optparse import OptionParser
TEST_ITEMS = {
('doi', '10.1371/journal.pcbi.1000361') :
{
'aliases': ['doi', "... | total-impact/total-impact-core | extras/functional_tests/functional_test.py | Python | mit | 8,918 | [
"CDK"
] | 4fd538a0e0307610a6776d870f82d75c7db7487ccd5e49c5c0f8f50375e67f09 |
"""
Scematic Diagram of PCA
-----------------------
Figure 7.2
A distribution of points drawn from a bivariate Gaussian and centered on the
origin of x and y. PCA defines a rotation such that the new axes (x' and y')
are aligned along the directions of maximal variance (the principal components)
with zero covariance. ... | nhuntwalker/astroML | book_figures/chapter7/fig_PCA_rotation.py | Python | bsd-2-clause | 3,000 | [
"Gaussian"
] | 00be0b21cebafa6d7b0a179efd5c90daca6e4f7f80c04aa20e1a7d664cff0d0c |
__author__ = 'tylin'
__version__ = '2.0'
# Interface for accessing the Microsoft COCO dataset.
# Microsoft COCO is a large image dataset designed for object detection,
# segmentation, and caption generation. pycocotools is a Python API that
# assists in loading, parsing and visualizing the annotations in COCO.
# Pleas... | wenhuchen/ETHZ-Bootstrapped-Captioning | visual-concepts/coco/PythonAPI/pycocotools/coco.py | Python | bsd-3-clause | 16,953 | [
"VisIt"
] | 6cf0c67f60cb87372e2944a9d1199eff9b1bad66271c8c48ce520a7181decbe5 |
"""
Acceptance tests for Home Page (My Courses / My Libraries).
"""
from bok_choy.web_app_test import WebAppTest
from opaque_keys.edx.locator import LibraryLocator
from unittest import skip
from ...pages.studio.auto_auth import AutoAuthPage
from ...pages.studio.library import LibraryEditPage
from ...pages.studio.index... | valtech-mooc/edx-platform | common/test/acceptance/tests/studio/test_studio_home.py | Python | agpl-3.0 | 2,146 | [
"VisIt"
] | 9428df4b4044f677849108f79971d3b68edc73fb8dd4ed48246c97fda728fe0c |
#!/usr/bin/env python
import unittest
import shutil
import os
import subprocess
import sys
from distutils.version import StrictVersion
def run(command):
""" run shell command & return unix exit code """
process = subprocess.Popen(command, shell=True, stdout=subprocess.PIPE, stderr=subprocess.PIPE)
out, err = proce... | snayfach/PhyloCNV | test/test_midas.py | Python | gpl-3.0 | 5,928 | [
"pysam"
] | d194e0c84d8a0067e58fa02fb687a6825705cc3142b89a9689b63b46933e7c58 |
# Copyright 2010 Dan Smith <dsmith@danplanet.com>
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This program is ... | mach327/chirp_fork | chirp/drivers/kenwood_live.py | Python | gpl-3.0 | 44,648 | [
"Elk"
] | 55b75285e64a00cc45a5067485f50a3099f57e95bb2fc8c89518d414bf799829 |
#
# Copyright 2001 - 2006 Ludek Smid [http://www.ospace.net/]
#
# This file is part of IGE - Outer Space.
#
# IGE - Outer Space is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the Lice... | Lukc/ospace-lukc | server/lib/ige/ospace/IFleet.py | Python | gpl-2.0 | 51,556 | [
"Galaxy"
] | bb99e2eadb69f49d57421ed430a2da194175b45f746e3e83e1c4fe5560563bae |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
Input sets for Qchem
"""
import logging
import os
from monty.io import zopen
from pymatgen.io.qchem.inputs import QCInput
from pymatgen.io.qchem.utils import lower_and_check_unique
__author__ = "Samuel ... | davidwaroquiers/pymatgen | pymatgen/io/qchem/sets.py | Python | mit | 10,509 | [
"pymatgen"
] | 58adf9c7451f8eea544f82d4ce213593f596b61f5e022fcbe55e6630a27eb979 |
"""
This module contain utilities for the source finding routines
"""
import numpy
import math
import scipy.integrate
from tkp.sourcefinder.gaussian import gaussian
from tkp.utility import coordinates
def generate_subthresholds(min_value, max_value, num_thresholds):
"""
Generate a series of ``num_thresholds``... | mkuiack/tkp | tkp/sourcefinder/utils.py | Python | bsd-2-clause | 8,748 | [
"Gaussian"
] | def1a81206a32f6eb7a9c58933a8e019fb3ff5bd476709a1d3d70ae7795aec76 |
#!/usr/bin/env python
import pysam
import argparse
import multiprocessing as mp
import subprocess
import logging
logger = logging.getLogger(__name__)
FORMAT = '%(asctime)s %(message)s'
logging.basicConfig(format=FORMAT)
logger.setLevel(logging.INFO)
from math import log10
import pandas as pd
import scipy.stats as s... | adamewing/tebreak | scripts/bam_cpm_mask.py | Python | mit | 2,815 | [
"pysam"
] | 0814a066ed2b81a95996d928b9f1bb28504992d574ad592c2beac2066653fa92 |
'''OpenAnything: a kind and thoughtful library for HTTP web services
This program is part of 'Dive Into Python', a free Python book for
experienced programmers. Visit http://diveintopython.org/ for the
latest version.
'''
__author__ = 'Mark Pilgrim (mark@diveintopython.org)'
__version__ = '$Revision: 1.6 $'[11:-2]
_... | pacoqueen/cican | utils/gmapcatcher/gmapcatcher/openanything.py | Python | gpl-3.0 | 6,282 | [
"VisIt"
] | c8c4665675a0e9de665f9955f1f3d87efa3b9161a0415b0af5e7b1a2b0b417f7 |
#!/usr/bin/python
# (C) 2014, Markus Wildi, markus.wildi@bluewin.ch
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2, or (at your option)
# any later version.
#
# Th... | zguangyu/rts2 | scripts/rts2saf/rts2saf_frosted.py | Python | gpl-2.0 | 1,649 | [
"VisIt"
] | b46aa19e9a50c6e2395ce55649da76a7dff7e150c203e45f30379c37937ee53f |
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2005-2007 Donald N. Allingham
# Copyright (C) 2008 Brian G. Matherly
# Copyright (C) 2009 Benny Malengier
# Copyright (C) 2010 Nick Hall
# Copyright (C) 2010 Jakim Friant
# Copyright (C) 2012 Gary Burton
# Copyright (C) 2... | beernarrd/gramps | gramps/gui/viewmanager.py | Python | gpl-2.0 | 69,222 | [
"Brian"
] | 92bbe76f0d1816501e89a28861c283f7e3f5921769f408cf595719244958a3fe |
"""
Generating lines of code.
"""
from functools import partial, wraps
import sys
from typing import Collection, Iterator, List, Optional, Set, Union
from black.nodes import WHITESPACE, RARROW, STATEMENT, STANDALONE_COMMENT
from black.nodes import ASSIGNMENTS, OPENING_BRACKETS, CLOSING_BRACKETS
from black.nodes import... | psf/black | src/black/linegen.py | Python | mit | 42,162 | [
"VisIt"
] | f4b1a5395b8d9fbd938551ad4d9e2672fa3756b93e44476947de1cb037050050 |
import fnmatch
import os
import posixpath
import re
import sys
from ast import AST, Attribute, iter_fields, Name
if sys.version_info[0] == 3:
string_types = (str,)
else:
string_types = (basestring,) # noqa
IGNORED_DIRS = [
'*.egg-info',
'.bzr',
'.cache',
'.git',
'.hg',
'.idea',
'.... | suutari-ai/shoop | _misc/sanity_utils.py | Python | agpl-3.0 | 5,137 | [
"VisIt"
] | 9792af562b33e081a62f295373accd9225c0752de22c2150e9ca2cb46421df2a |
import numpy as np
from operator import attrgetter
from scipy.ndimage.morphology import distance_transform_edt as scipy_edt
from scipy.spatial.distance import euclidean
import glob
import os
import sys
# http://www.gaussian.com/g_tech/g_ur/k_constants.htm
angstrom_per_bohr = 0.5291772086
AXES = ['x', 'y', 'z']
class... | jszopi/repESP | repESP_old/cube_helpers.py | Python | gpl-3.0 | 19,741 | [
"Gaussian"
] | 45214023bbef6fc35ddb1a0ecbc74882c53672fb4cb7a088cd70cc990b33286f |
""" ARC Computing Element
Using the ARC API now
**Configuration Parameters**
Configuration for the ARCComputingElement submission can be done via the configuration system.
XRSLExtraString:
Default additional string for ARC submit files. Should be written in the following format::
(key = "value")
XRSLMP... | DIRACGrid/DIRAC | src/DIRAC/Resources/Computing/ARCComputingElement.py | Python | gpl-3.0 | 30,607 | [
"DIRAC"
] | 2195489d793c6d13e71d732de2594ee6021b239dadf1f07fe423405158ed9905 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
from __future__ import division, unicode_literals
"""
Created on Mar 18, 2012
"""
__author__ = "Shyue Ping Ong"
__copyright__ = "Copyright 2012, The Materials Project"
__version__ = "0.1"
__maintainer__ = "S... | czhengsci/pymatgen | pymatgen/apps/borg/tests/test_queen.py | Python | mit | 1,372 | [
"pymatgen"
] | e841a3e0c8cfd99931bc932925c5538436edcfaf29019b0f45a6e925b6c65082 |
# Copyright 2015 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | strint/tensorflow | tensorflow/python/ops/template.py | Python | apache-2.0 | 12,917 | [
"VisIt"
] | 3437cae55a86f29652b9a92eaf7809974a937e49bd5122e67d9aa20d108babef |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""
@file tls_vissimXML2SUMOnet_update.py
@author Lukas Grohmann <Lukas.Grohmann@ait.ac.at>
@author Gerald Richter <Gerald.Richter@ait.ac.at>
@date Jun 11 2015
@version $Id: tls_vissimXML2SUMOnet_update.py 22608 2017-01-17 06:28:54Z behrisch $
Converts a VISSIM-tls... | 702nADOS/sumo | tools/import/vissim/tls_vissimXML2SUMOnet_update.py | Python | gpl-3.0 | 24,957 | [
"Amber"
] | 268427fe5ac6748b2ba8b5a73081368119b577a071022770f034758ab234f9ec |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
#
#******************************************************************************
#*
#* Copyright (C) 2015 Kiran Karra <kiran.karra@gmail.com>
#*
#* This program is free software: you can redistribute it and/or modify
#* it under the terms of the GNU General Public Licens... | kkarrancsu/copula-bayesian-networks | ecdf.py | Python | gpl-3.0 | 4,661 | [
"Gaussian"
] | 5641a778d02b56bccf3731212e4acc6501f7afd3b67cd3a5c790e7d1979e20c6 |
from __future__ import division
from pylab import *
import utils
utils.backup(__file__)
from stats import AbstractStat
from stats import HistoryStat
from stats import _getvar
from common.sources import TrialSource
from utils.lstsq_reg import lstsq_reg
import cPickle as pickle
import gzip
def load_source(name,c):
... | Saran-nns/SORN | common/sorn_stats.py | Python | mit | 74,077 | [
"NEURON"
] | 20d4638cf3db4898f7c31d2c53c9c08ff3c5dd208b6af0cc07dffa31f92baec2 |
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2003-2007 Donald N. Allingham
# Copyright (C) 2007-2008 Brian G. Matherly
# Copyright (C) 2010 Jakim Friant
# Copyright (C) 2012 Nick Hall
# Copyright (C) 2011-2014 Paul Franklin
#
# This program is free software; you can redistribute it... | pmghalvorsen/gramps_branch | gramps/gui/plug/report/_bookdialog.py | Python | gpl-2.0 | 39,233 | [
"Brian"
] | 0efce33f656cd49afc7d720e983932f13db3280d3a54d7dc3e83592138faa58a |
from django.utils.translation import ugettext as _
from django.conf import settings
import os, syslog
# ------------------------------------------- #
# CONFIGURATION
# ------------------------------------------- #
# Global
conf = {
'appdir': os.path.dirname(os.path.realpath(__file__)),
'taskdir': os.pa... | hicinformatic/DJANGO-Tracker | settings.py | Python | gpl-3.0 | 4,355 | [
"VisIt"
] | a82164c8b7c2fe40bb9b628e1101a7fab1415afe8d6f4b6380215c5be5614cc4 |
"""
=======================================================
Diffeomorphic Registration with binary and fuzzy images
=======================================================
This example demonstrates registration of a binary and a fuzzy image.
This could be seen as aligning a fuzzy (sensed) image to a binary
(e.g., temp... | FrancoisRheaultUS/dipy | doc/examples/register_binary_fuzzy.py | Python | bsd-3-clause | 4,831 | [
"Gaussian"
] | e4b87cd9e9983a93f167619c8e0ffab0e23294d81ce9d6865ad713837b3eb1c3 |
"""
=================================
Map data to a normal distribution
=================================
.. currentmodule:: sklearn.preprocessing
This example demonstrates the use of the Box-Cox and Yeo-Johnson transforms
through :class:`~PowerTransformer` to map data from various
distributions to a normal distribut... | glemaitre/scikit-learn | examples/preprocessing/plot_map_data_to_normal.py | Python | bsd-3-clause | 4,716 | [
"Gaussian"
] | b981315f216514de09b08e2131d44a572facaf82d104d98596a2bfe6226b9ebd |
"""
Gaussian Mixture Models.
This implementation corresponds to frequentist (non-Bayesian) formulation
of Gaussian Mixture Models.
"""
# Author: Ron Weiss <ronweiss@gmail.com>
# Fabian Pedregosa <fabian.pedregosa@inria.fr>
# Bertrand Thirion <bertrand.thirion@inria.fr>
import numpy as np
import warni... | GbalsaC/bitnamiP | venv/lib/python2.7/site-packages/sklearn/mixture/gmm.py | Python | agpl-3.0 | 29,124 | [
"Gaussian"
] | d4964b9854390f323e01dd377d378d0b1640f3b805bd85cfb7d0eec8f3f509cb |
#####
# Author : David Stewart
# Date : April 14, 2016
# Problem : https://projecteuler.net/problem=29
# Brief : How many unique numbers are there for, where 2 <= x,y <= 100, x^y?
# Comments : This one was a fun one. I thought of a couple different ways to approach it.
# First approach used ... | DavidOStewart/ProjectEuler | 29.py | Python | mit | 1,986 | [
"VisIt"
] | 4255afa82a350b897c0eb1e483ec2e9e2ab5c789f79c8f0d9b0a344f81a27dfc |
"""
@author: Yuhuang Hu
@contact: duguyue100@gmail.com
@note: setup experiment of supervised classification task.
"""
import sys;
sys.path.append("..");
import time;
import numpy as np;
from sacred import Experiment;
import conceptors.util as util;
import conceptors.net as net;
from conceptors.dataset import load_... | duguyue100/conceptors | scripts/classify_exp.py | Python | gpl-3.0 | 7,155 | [
"NEURON"
] | be35164e18730626bea2d0e7a3aa19892fad82547aa4fccd663ae8959a637c6f |
from sdssgaussfitter import gaussfit
import numpy as np
from scipy import interpolate
import os,sys
from util import utils
from util.readDict import readDict
from mpl_toolkits.mplot3d import Axes3D
import matplotlib.pyplot as plt
def aperture(startpx,startpy,radius=7):
r = radius
length = 2*r
height = le... | bmazin/ARCONS-pipeline | examples/Pal2012_landoltPhot/landoltFitPsf.py | Python | gpl-2.0 | 7,656 | [
"Gaussian"
] | 0bca95809ad3d0862d0328d47834e025cc75f4474dbda64f708431cdd7501c9e |
# -*- coding: utf-8 -*-
#
# gap_junctions_two_neurons.py
#
# This file is part of NEST.
#
# Copyright (C) 2004 The NEST Initiative
#
# NEST is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 2 of t... | terhorstd/nest-simulator | pynest/examples/gap_junctions_two_neurons.py | Python | gpl-2.0 | 3,140 | [
"NEURON"
] | d5ec08ebdfe9367020c0e850971b70cf1b542fa98fa1bf749a17d9b4d1a32552 |
# This code is part of Ansible, but is an independent component.
# This particular file snippet, and this file snippet only, is BSD licensed.
# Modules you write using this snippet, which is embedded dynamically by Ansible
# still belong to the author of the module, and may assign their own license
# to the complete wo... | fernandezcuesta/ansible | lib/ansible/module_utils/basic.py | Python | gpl-3.0 | 112,433 | [
"VisIt"
] | 407856092d8526798d89e8aa0ec29d7b812b290351f3234c1c61e9334fda4031 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
This module provides objects describing the basic parameters of the
pseudopotentials used in Abinit, and a parser to instantiate pseudopotential objects..
"""
from __future__ import unicode_literals, divisio... | czhengsci/pymatgen | pymatgen/io/abinit/pseudos.py | Python | mit | 63,668 | [
"ABINIT",
"pymatgen"
] | 92536dcea71c7410bfe3917a77806a4dadffeae3fa57753e46af338f7b3b4526 |
#!/usr/bin/env python
# Copyright (C) 2007 University of Texas at Austin
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License, or
# (at your option) any later versi... | zxtstarry/src | framework/rsf/sftour.py | Python | gpl-2.0 | 3,094 | [
"VisIt"
] | 866c42b4b20e3106cdc7a497d77a1261ac56cf0e5585435794feb9dbc76463a0 |
#!/usr/bin/env python
#from math import *
import gi
gi.require_version('NumCosmo', '1.0')
gi.require_version('NumCosmoMath', '1.0')
from gi.repository import GObject
from gi.repository import NumCosmo as Nc
from gi.repository import NumCosmoMath as Ncm
Ncm.cfg_init ()
NT = 3 # Number of threads
NClust... | NumCosmo/NumCosmo | scripts/mass_calibration_planck_clash.py | Python | gpl-3.0 | 3,891 | [
"Gaussian"
] | b5a9fa940ced6158c8a1d3a7f1f6150b8736c0efd329319e2f520c0b05e40149 |
"""
Contains tests to check a particular script's results or speed have
not changed.
Check README and buildbot to see how all these tests are run.
"""
import pickle, copy, __main__, timeit, os, os.path, socket, cPickle, inspect, traceback, tempfile, shutil
from numpy.testing import assert_array_equal, assert_array_... | Tasignotas/topographica_mirror | topo/tests/test_script.py | Python | bsd-3-clause | 26,287 | [
"Gaussian"
] | 9569f21be49cec7077c6fef92b34f39fdc7b85eb55a4bf6f8ffe702469505306 |
import getopt
import logging
import sys
import matplotlib.pyplot as plt
from matplotlib import cm
from Comm.EnsembleReceiver import EnsembleReceiver
logger = logging.getLogger("EnsembleReceiver")
logger.setLevel(logging.DEBUG)
FORMAT = '[%(asctime)-15s][%(levelname)s][%(funcName)s] %(message)s'
logging.basicConfig(f... | ricorx7/rti_python | Frontend/LivePlot.py | Python | bsd-3-clause | 3,742 | [
"Gaussian"
] | 3f92a2b4242337939068209afcdb91aeffba40e73a434077fd586fb4cea405e3 |
"""
Tests for CountModel class, which includes various linear models designed for
count data
Test data is the Columbus dataset after it has been rounded to integers to act
as count data. Results are verified using corresponding functions in R.
"""
__author__ = 'Taylor Oshan tayoshan@gmail.com'
import unittest
impor... | TaylorOshan/pysal | pysal/contrib/spint/tests/test_count_model.py | Python | bsd-3-clause | 4,181 | [
"COLUMBUS"
] | 5b8ce662208271b3a7b91bfc381a8e49ec8a2a421590017dbe087f4061a309ab |
#!/usr/bin/python
'''
File defining a python class for snowpit data
November 2016, Simon Filhol
'''
import numpy as np
import pandas as pd
import os
import snowpyt.CAAMLv6_xml as cxv6
from snowpyt.snowflake.sf_dict import snowflake_symbol_dict
import snowpyt.snowflake.sf_dict as sfd
from matplotlib import pyplot a... | ArcticSnow/snowpyt | build/lib/snowpyt/pit_class.py | Python | mit | 23,226 | [
"CRYSTAL"
] | b047a142ca89652d2c20973046d19a814f1012280eef87522bcad8fec9068d43 |
# -*- coding: utf-8 -*-
##
## This file is part of Invenio.
## Copyright (C) 2011 CERN.
##
## Invenio is free software; you can redistribute it and/or
## modify it under the terms of the GNU General Public License as
## published by the Free Software Foundation; either version 2 of the
## License, or (at your option) a... | jmartinm/invenio | modules/bibauthorid/lib/bibauthorid_templates.py | Python | gpl-2.0 | 180,706 | [
"VisIt"
] | 2ac70309bacd3b9b771b0461848b219c5f74d0522b1ff9a4151dd2178f45bebc |
#
# Copyright 2021 Lars Pastewka (U. Freiburg)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Found... | libAtoms/matscipy | maintenance/copyright.py | Python | lgpl-2.1 | 3,148 | [
"Matscipy"
] | 4f63ec5fc2014a9ec1de7e6705b1d69dd964849c845135b5456fcbf2803acff4 |
# -*- coding: utf-8 -*-
#
# CleanerVersion documentation build configuration file, created by
# sphinx-quickstart on Tue Jul 22 13:37:08 2014.
#
# This file is execfile()d with the current directory set to its
# containing dir.
#
# Note that not all possible configuration values are present in this
# autogenerated file... | swisscom/cleanerversion | docs/conf.py | Python | apache-2.0 | 9,124 | [
"Brian"
] | bcbfa5104d748c246b452ec6afe3aef2d19a584d30975f4f7790c7ac45bc6448 |
""" StateMachine
This module contains the basic blocks to build a state machine ( State and
StateMachine ). And the RSS implementation of it, using its own states map.
"""
from DIRAC import S_OK, S_ERROR
__RCSID__ = '$Id: $'
class State( object ):
"""
State class that represents a single step on a Sta... | vmendez/DIRAC | ResourceStatusSystem/PolicySystem/StateMachine.py | Python | gpl-3.0 | 9,395 | [
"DIRAC"
] | 08485e081c016b42a2aebf7a651c12d048ec301f1fd1c45da49712cf4d2bcab1 |
#!/usr/bin/env python
# coding: utf-8
# # Minimal Example: Gaussian Processes
#
# In this example script, we'll reproduce Figure 7 from the fitting release paper ([Conroy et al. 2020](http://phoebe-project.org/publications/2020Conroy+)).
#
# <img src="http://phoebe-project.org/images/figures/2020Conroy+_fig7.png" al... | phoebe-project/phoebe2-docs | development/examples/minimal_GPs.py | Python | gpl-3.0 | 3,237 | [
"Gaussian"
] | ad03eec1e4a8f31e34bf95897c247ed9976535cedf51db8bfa8d0a4dfd92a1ed |
__author__ = 'Brian'
# My first neural net!!!
import math
import numpy as np
import pandas as pd
import matplotlib.pyplot as plt
import seaborn as sns
import tensorflow as tf
from tensorflow.examples.tutorials.mnist import input_data
# Consider implementing feature scaling/whitening (scipy.cluster.vq.whiten?)
# Consi... | bhwester/neural-network | neuralnet.py | Python | mit | 18,251 | [
"Brian"
] | 661452e9a04d5c4066deca6c190570a4c994ecafa57ded409bc5f9cdc006007c |
#!/usr/bin/python
# Emacs settings: -*- tab-width: 4 -*-
#
# Copyright (c) 2002-2003 Apple Computer, Inc. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://... | ghmajx/asuswrt-merlin | release/src/router/mDNSResponder/mDNSPosix/parselog.py | Python | gpl-2.0 | 10,526 | [
"Jaguar"
] | 7332ef800477122807d1a84162b518c59f3a062b94da44f1e5c256e4f823acfd |
'''
Set up Visual Sudio to build a specified MPIR configuration
Copyright (C) 2011, 2012, 2013, 2014, 2015 Brian Gladman
'''
from operator import itemgetter
from os import listdir, walk, unlink, makedirs
from os.path import split, splitext, isdir, relpath, join, exists
from os.path import dirname, normpath
from copy... | jpflori/flint2 | build.vc14/build_tests/build_tests.py | Python | lgpl-2.1 | 5,047 | [
"Brian"
] | bfa88c668be951ca362d3a0c3059c6975eb774695de8a62f5cc87b70da15d03d |
"""
Extended math utilities.
"""
# Authors: G. Varoquaux, A. Gramfort, A. Passos, O. Grisel
# License: BSD
import math
from . import check_random_state
import numpy as np
from scipy import linalg
def norm(v):
v = np.asarray(v)
__nrm2, = linalg.get_blas_funcs(['nrm2'], [v])
return __nrm2(v)
def _fast_lo... | joshbohde/scikit-learn | sklearn/utils/extmath.py | Python | bsd-3-clause | 6,785 | [
"Gaussian"
] | 2342ffe7910686469d7a8845ea1b3a0884494c38c77a8ae4d813ddd6be82f262 |
#!/usr/bin/python
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# Ansible is distributed... | az7arul/ansible-modules-core | cloud/amazon/ec2_elb_lb.py | Python | gpl-3.0 | 33,856 | [
"Dalton"
] | 4769f3e2da538609f0c7934221a41d5241212f22fe350fa2321a76eca4fff86d |
# ----------------------------------------------------------------------
# Numenta Platform for Intelligent Computing (NuPIC)
# Copyright (C) 2013, Numenta, Inc. Unless you have purchased from
# Numenta, Inc. a separate commercial license for this software code, the
# following terms and conditions apply:
#
# This pro... | tkaitchuck/nupic | py/regions/ImageSensorExplorers/RandomJump.py | Python | gpl-3.0 | 7,906 | [
"VisIt"
] | cbaa5ac4e51d3fb740a37c977c23b020658e5660678e3fd94651d6577423a756 |
import sys
import ast
from llvm.core import *
from llvm.ee import *
i64 = Type.int(64)
i32 = Type.int(32)
i8 = Type.int(8)
i8ptr = Type.pointer(i8)
def c_i32(n):
return Constant.int(i32, n)
class Context(object):
def __init__(self, mod, block, builder, main):
object.__init__(self)
self.modul... | thomaslee/snappy | snappy.py | Python | mit | 3,232 | [
"VisIt"
] | 6827a220ae94cf751ddffd7cc71c3922c00e5970c1f840cab08f52d676f6a10b |
# tests.test_features.test_rankd
# Test the rankd feature analysis visualizers
#
# Author: Benjamin Bengfort <bbengfort@districtdatalabs.com>
# Created: Fri Oct 07 12:19:19 2016 -0400
#
# Copyright (C) 2016 District Data Labs
# For license information, see LICENSE.txt
#
# ID: test_rankd.py [01d5996] benjamin@bengfor... | pdamodaran/yellowbrick | tests/test_features/test_rankd.py | Python | apache-2.0 | 15,507 | [
"Gaussian"
] | 9cd263c9735fb4ef1ab70bcf6d4c96dcf94d7e0a1c40a40b9b8f372ebf078170 |
import click
from parsec.cli import pass_context, json_loads
from parsec.decorators import custom_exception, json_output
@click.command('search_repositories')
@click.argument("q", type=str)
@click.option(
"--page",
help="page requested",
default="1",
show_default=True,
type=int
)
@click.option(
... | galaxy-iuc/parsec | parsec/commands/toolshed_repositories/search_repositories.py | Python | apache-2.0 | 2,811 | [
"Galaxy"
] | ae06a7c33c124b98ab4238fd3079e47e2eac6035b2c1e4590bd9b3c10327f007 |
import sys
import os
import numpy as np
import h5py
import multiprocessing
import cPickle
import ephem
import matplotlib.pyplot as plt
import types
from sklearn.gaussian_process import GaussianProcess
from sklearn.cross_validation import train_test_split
from sklearn import metrics, linear_model, tree, ensemble
# NOTE... | acbecker/solar | gp4/regress11.py | Python | mit | 9,521 | [
"Gaussian"
] | 4f771d81e879fd3a32a615d13a3367b7a3e3569af38a41220aa6c964b847897e |
# Copyright (C) 2010-2019 The ESPResSo project
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later v... | espressomd/espresso | src/python/espressomd/math.py | Python | gpl-3.0 | 1,754 | [
"ESPResSo"
] | b6d0c510784557d9288fa2d464dae0841493732b6cb2a494813d2cca739fea9e |
""" :mod: RequestTaskTests
=======================
.. module: RequestTaskTests
:synopsis: test cases for RequestTask class
test cases for RequestTask class
"""
from __future__ import print_function
__RCSID__ = "$Id $"
# #
# @file RequestTaskTests.py
# @author Krzysztof.Ciba@NOSPAMgmail.com
# @date 20... | fstagni/DIRAC | RequestManagementSystem/private/test/RequestTaskTests.py | Python | gpl-3.0 | 3,166 | [
"DIRAC"
] | 3b40fb17666578a52c222b22b87ab505400ff670aa7b38f0c5d1bbb4933476ed |
#! /usr/bin/env python
from __future__ import print_function
import argparse, gzip, pysam, re, sys
def extract_reference_slices(faf_ref, f_fasta, f_out, f_bed=None):
for coord in get_coords(f_fasta, f_bed):
key="{}:{}-{}".format(*coord)
seq=faf_ref.fetch(region=key)
print(">{}".format(ke... | dellytools/maze | extract_reference_slices.py | Python | mit | 4,489 | [
"pysam"
] | dc70dacd3c7c755803c64f469d5cf5c15e5fd7a31f395459f43be153f2dbdc7b |
"""Tests for _sketches.py."""
from __future__ import division, print_function, absolute_import
import numpy as np
from scipy.linalg import clarkson_woodruff_transform
from numpy.testing import assert_
def make_random_dense_gaussian_matrix(n_rows, n_columns, mu=0, sigma=0.01):
"""
Make some random data with ... | mbayon/TFG-MachineLearning | venv/lib/python3.6/site-packages/scipy/linalg/tests/test_sketches.py | Python | mit | 2,000 | [
"Gaussian"
] | e0cbbffae30d1128d9f7cf8a5baedbd0fc8dd5aa792f31cb38263eace482e400 |
# coding: utf-8
# Part of Odoo. See LICENSE file for full copyright and licensing details.
from contextlib import contextmanager
from datetime import datetime, timedelta
from unittest.mock import patch
from odoo.addons.base.tests.common import HttpCaseWithUserDemo
from odoo.addons.website.tools import MockRequest
fro... | ygol/odoo | addons/website/tests/test_website_visitor.py | Python | agpl-3.0 | 15,250 | [
"VisIt"
] | 3b6b7c0f00001b878576f2d7eeb2fa8c05430f9aeca4f181b753f5480b975206 |
# -*- coding: utf-8 -*-
#
# balancedneuron.py
#
# This file is part of NEST.
#
# Copyright (C) 2004 The NEST Initiative
#
# NEST is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 2 of the License,... | INM-6/nest-git-migration | pynest/examples/balancedneuron.py | Python | gpl-2.0 | 6,690 | [
"NEURON"
] | 04799a46e6a8477fefea0cb8d7f55ab00ab8e520ca1c412796e3d91e8cdd33da |
"""
Python implementation of the fast ICA algorithms.
Reference: Tables 8.3 and 8.4 page 196 in the book:
Independent Component Analysis, by Hyvarinen et al.
"""
# Author: Pierre Lafaye de Micheaux, Stefan van der Walt, Gael Varoquaux,
# Bertrand Thirion, Alexandre Gramfort
# License: BSD 3 clause
import war... | lucidfrontier45/scikit-learn | sklearn/decomposition/fastica_.py | Python | bsd-3-clause | 14,751 | [
"Gaussian"
] | 79903664884c0cbcfb6831342ff56e8c9dfba7f182e45b683a65733d88a3cb05 |
# sql/compiler.py
# Copyright (C) 2005-2015 the SQLAlchemy authors and contributors
# <see AUTHORS file>
#
# This module is part of SQLAlchemy and is released under
# the MIT License: http://www.opensource.org/licenses/mit-license.php
"""Base SQL and DDL compiler implementations.
Classes provided include:
:class:`.c... | thundernet8/WRGameVideos-API | venv/lib/python2.7/site-packages/sqlalchemy/sql/compiler.py | Python | gpl-2.0 | 100,608 | [
"VisIt"
] | ea1cad4d4d1aa54713c07248aee2674b6fac79b7c55cc005077626a742454e94 |
import os
from boxbranding import getMachineBrand, getMachineName
import xml.etree.cElementTree
from datetime import datetime
from time import ctime, time, strftime, localtime, mktime
from bisect import insort
from enigma import eActionMap, quitMainloop
from Components.config import config
from Components.TimerSanity... | idrogeno/FusionOE | PowerTimer.py | Python | gpl-2.0 | 44,704 | [
"ASE"
] | 16d3f2c2bdd0e2c7793d24bf2dd271eee0830158340b4ba537ac56d57ee0b171 |
#! /usr/bin/env python
# ===========================================================================================#
# This script tests the offset angle dependence of the instrumental response function.
#
# ===========================================================================================#
from gammalib impo... | cdeil/gammalib | inst/cta/test/test_irf_offset.py | Python | gpl-3.0 | 5,601 | [
"Gaussian"
] | 8f40a8a9d0f579792a635e18acc406108490cd94782fa7d35c12b26f8f6ca4e7 |
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