text stringlengths 12 1.05M | repo_name stringlengths 5 86 | path stringlengths 4 191 | language stringclasses 1
value | license stringclasses 15
values | size int32 12 1.05M | keyword listlengths 1 23 | text_hash stringlengths 64 64 |
|---|---|---|---|---|---|---|---|
import Bio
import os
from Bio.Seq import Seq
from Bio import motifs
from Bio.Alphabet import IUPAC
''' Script uses BioPython to generate position weight matrices from a directory containing Fasta files for
each modules phospho-peptides. Note: Duplicate amino acid sequences should be removed from the Fasta files before... | mmacgilvray18/Phospho_Network | python/Create_PWMs_From_Module_Fasta.py | Python | gpl-3.0 | 1,540 | [
"Biopython"
] | e564006e8a135fbc7da0b7ac2c0a8958a8bb827ee45eac0ade2cf6826890b21d |
import numpy as np
from scipy import ndimage
from skimage.morphology import remove_small_objects
from skimage.measure import regionprops
from skimage.io import imread
from collections import defaultdict
import matplotlib.pyplot as plt
from matplotlib import cm
from Bio import Phylo
####################################... | qbio2014/cellTracking | src/segmentation_tools.py | Python | gpl-2.0 | 24,884 | [
"Biopython"
] | 5e8b9dfccb61261deb070ae0802bb3197b6f8d2915910a4ebddb8ef0a24e4b12 |
# -*- coding: utf-8 -*-
from __future__ import unicode_literals, absolute_import
import os
import sys
import unittest
import mock
import nikola
import nikola.plugins.command.import_wordpress
from .base import BaseTestCase
class BasicCommandImportWordpress(BaseTestCase):
def setUp(self):
self.module = ... | immanetize/nikola | tests/test_command_import_wordpress.py | Python | mit | 20,899 | [
"VisIt"
] | bbb8a8220b1323590bb19d18833aaf66660cdfc3a907d7585309fe01e7f8771c |
# Orca
# Copyright (C) 2016 UrbanSim Inc.
# See full license in LICENSE.
import os
import tempfile
import pandas as pd
import pandas.testing as pdt
import pytest
from .. import orca
from ..utils.testing import assert_frames_equal
def setup_function(func):
orca.clear_all()
orca.enable_cache()
def teardown... | UDST/orca | orca/tests/test_orca.py | Python | bsd-3-clause | 36,982 | [
"ORCA"
] | 3ff2c29c9f897b1f212679e6d53a9bef0652d8b160525c8a856ce1b895f14b74 |
""":mod:`news.reporters.url` --- URL reporters
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Provide a concrete URL news reporter.
"""
from bs4 import BeautifulSoup
from extraction import Extractor
from ..models.abstract import Readable
from .generics import TraversingReporter
from .mixins import (
BatchTraversi... | kuc2477/news | news/reporters/url.py | Python | mit | 3,069 | [
"VisIt"
] | 502768ff20c1928b55ac2afd519540f2d72894b4abcbb3d37a34ce1fed48a841 |
#!/usr/bin/env python
# Copyright: (c) 2013, James Cammarata <jcammarata@ansible.com>
# Copyright: (c) 2018-2021, Ansible Project
# GNU General Public License v3.0+ (see COPYING or https://www.gnu.org/licenses/gpl-3.0.txt)
# PYTHON_ARGCOMPLETE_OK
from __future__ import (absolute_import, division, print_function)
__met... | jborean93/ansible | lib/ansible/cli/galaxy.py | Python | gpl-3.0 | 81,162 | [
"Galaxy"
] | 31969a935bf228adf0fe2b7f01b9c9b7c06ab4dc1cfab8f1a2bd48a9f768bf40 |
#!/usr/bin/env python
from __future__ import print_function
import argparse
import glob
import sys
import numpy as np
import pysam
MISSING_QUAL_CHAR = '"' # got from calling 'samtools bam2fq' on bam w/o qualities
def parse_args():
parser = argparse.ArgumentParser("Produce FASTQ file from soft-clipped reads")
... | benedictpaten/marginPhase | toil/src/toil_marginphase/scripts/fastq_from_bam.py | Python | mit | 1,808 | [
"pysam"
] | 1b4b01e861358be196aaa4a193286b6332318f0f4fea5bed02662c417fe3e587 |
#!/usr/bin/env python
# coding: utf-8
from __future__ import absolute_import
"""
"""
from puliclient.server.renderNodeHandler import RenderNodeHandler
from octopus.core import enums
rnHandler = RenderNodeHandler()
(allRnList, summary) = rnHandler.getAllRenderNodes()
print "All render nodes"
if allRnList:
for rn... | mikrosimage/OpenRenderManagement | scripts/examples/request-edit/01_request_rendernodes.py | Python | bsd-3-clause | 1,206 | [
"Octopus"
] | 266c152f2b2988e857813fe5feffa84ea98dd81414e8ceb18b7eb0dfe31eb724 |
"""
Tests the forum notification views.
"""
import json
import logging
from datetime import datetime
import ddt
import pytest
import six
from django.http import Http404
from django.test.client import Client, RequestFactory
from django.test.utils import override_settings
from django.urls import reverse
from django.ut... | msegado/edx-platform | lms/djangoapps/discussion/tests/test_views.py | Python | agpl-3.0 | 91,039 | [
"VisIt"
] | fbe6c8c31e6cc820823ec97fe222e2ed74f8b86e545ee6b47a03816f72e0068f |
from resp_base import Obligation, Deadline, ResourceDelta, ResponsibilityEffect, Act, mean, BullshitAgent
from resp_base import CourseworkWorkflow, IncompetentCourseworkWorkflow, HedonisticAgent, StudiousAgent, Lecturer
from theatre_ag.theatre_ag import SynchronizingClock
import matplotlib.pyplot as plt
from random imp... | probablytom/msci-model | tests/test_new_behaviour_graphs.py | Python | mit | 7,344 | [
"VisIt"
] | a553a603cbaf30bb51cd9a17f5a0f580ac81a23aebbfb70ebde7e50fd431d92e |
import random
import numpy as np
from operator import itemgetter
from ase.ga.offspring_creator import OffspringCreator
from ase.ga.utilities import get_distance_matrix, get_nndist
from ase import Atoms
class Mutation(OffspringCreator):
"""Base class for all particle mutation type operators.
Do not call this ... | suttond/MODOI | ase/ga/particle_mutations.py | Python | lgpl-3.0 | 18,411 | [
"ASE"
] | 3598272a38d948016f7d781f81e98e6a38759df7ac32c290ddd701fe17c1385d |
#!/usr/bin/env python
# Standard packages
import os
import sys
import argparse
# Third-party packages
from toil.job import Job
# Package methods
from ddb import configuration
from ddb_ngsflow import gatk
from ddb_ngsflow import annotation
from ddb_ngsflow import pipeline
from ddb_ngsflow.align import bwa
from ddb_ng... | dgaston/ddb-scripts | workflow-somatic_amplicon_nofreebayes_pindel.py | Python | mit | 9,674 | [
"BWA"
] | acac01ddb6e15661ca0d27bd350e62d112fae2518ccfed486ff3b21decf26cfd |
# -*- coding: utf-8 -*-
from __future__ import unicode_literals
from django.conf import settings
from django.conf.urls import include, url
from django.conf.urls.static import static
from django.contrib import admin
from django.views.generic import TemplateView
from django.views import defaults as default_views
from w... | Eraldo/eraldoenergy | config/urls.py | Python | bsd-3-clause | 2,433 | [
"VisIt"
] | ac9b91b1dce86176065cbcd58c3dc4716476f1b922af91f71b59ef4398ef10a9 |
# -*- coding: utf-8 -*-
# vi:si:et:sw=4:sts=4:ts=4
##
## Copyright (C) 2012 Async Open Source <http://www.async.com.br>
## All rights reserved
##
## This program is free software; you can redistribute it and/or modify
## it under the terms of the GNU General Public License as published by
## the Free Software Foundati... | tiagocardosos/stoq | stoqlib/gui/test/test_sellablesearch.py | Python | gpl-2.0 | 4,990 | [
"VisIt"
] | 2a150cc53f59930b080d0033c8baffe4e3479dec5e4c2cdf0636d8a33f1cf7ce |
import codecs
import inspect
import json
import logging
import math
import pickle
import os.path
import numpy as np
from . import objects
from . import connections
from . import simulator
logger = logging.getLogger(__name__)
class Model(object):
"""A model contains a single network and the ability to
run sim... | jaberg/nengo | nengo/model.py | Python | mit | 29,418 | [
"NEURON"
] | ae5c41fb6179f14a75538171cfdd8c5a10e8fc6f54849bcb9131ce08fe738947 |
#!/usr/bin/env python
# File created on 13 Jul 2012
from __future__ import division
__author__ = "Greg Caporaso"
__copyright__ = "Copyright 2011, The QIIME project"
__credits__ = ["Greg Caporaso"]
__license__ = "GPL"
__version__ = "1.8.0-dev"
__maintainer__ = "Greg Caporaso"
__email__ = "gregcaporaso@gmail.com"
from ... | wasade/qiime | qiime/map_reads_to_reference.py | Python | gpl-2.0 | 14,828 | [
"BWA"
] | afedb6d2b51f9ec053ec44cd0a25d567e650d87a5ab5a63d03ec85bb840dc6dd |
# -*- coding: utf-8 -*-
import numpy as np
from shapely.geometry.polygon import Polygon
import datetime
import netCDF4 as nc
import itertools
import geojson
from shapely.ops import cascaded_union
#from openclimategis.util.helpers import get_temp_path
#from openclimategis.util.toshp import OpenClimateShp
from shapely.ge... | OpenSource-/OpenClimateGIS | src/openclimategis/util/ncconv/OLD_ncconv/in_memory_oo_multi_core.py | Python | bsd-3-clause | 48,807 | [
"NetCDF"
] | def69ee51aa85b63d439d8c150a32862969e482a7eb0407a11ea7bb4238fb02c |
#!/usr/bin/env python3
# coding: utf-8
from __future__ import unicode_literals
import os
import re
import molbiox
import molbiox.kb
import molbiox.lib
from molbiox.settings import all_templates
mbx_root = os.path.dirname(molbiox.__file__)
def locate_template(tplname, new=False):
"""
Locate a template by na... | frozflame/molbiox | molbiox/frame/locate.py | Python | gpl-2.0 | 1,801 | [
"BLAST"
] | d295f70865c4f794ff89eb6683fb543dc453d60d18568d2d022f2c508529141f |
#-*- coding: iso-8859-15 -*-
# SADR METEOLLSKY
# http://www.sadr.fr
# SEBASTIEN LECLERC 2017
# Inspired by :
# NACHO MAS 2013
# http://induino.wordpress.com
# Config file
##### INDI RELATED #####
#To start indiserver use 'localhost'
#otherwise not start and connect remote
#indiserver
#INDISERVER="localhost"
INDISERVE... | broadcastyourseb/SADR | raspberry/allskySCRIPT/meteollskyconfig.py | Python | apache-2.0 | 1,549 | [
"VisIt"
] | a07912dbdcf7e40b5c95a17d69b68cab3e2d1242465f9369aba214c204a4e05b |
from sympy import (meijerg, I, S, integrate, Integral, oo, gamma, cosh, sinc,
hyperexpand, exp, simplify, sqrt, pi, erf, erfc, sin, cos,
exp_polar, polygamma, hyper, log, expand_func, Rational)
from sympy.integrals.meijerint import (_rewrite_single, _rewrite1,
meijerint_ind... | kaushik94/sympy | sympy/integrals/tests/test_meijerint.py | Python | bsd-3-clause | 30,251 | [
"Gaussian"
] | 633c90c87d2dfd813230c53ceb72f5659224eafb914b539d8fde804e1a6f49b9 |
#!/usr/bin/env python
"""
Copyright (c) 2006-2017 sqlmap developers (http://sqlmap.org/)
See the file 'doc/COPYING' for copying permission
"""
import binascii
import cookielib
import glob
import inspect
import logging
import httplib
import os
import random
import re
import socket
import string
import sys
import tempf... | zhinaonet/sqlmap-z | lib/core/option.py | Python | gpl-3.0 | 93,578 | [
"VisIt"
] | 5fc9d8ac2ad24331ec712e04884de0b684c2ea2ae81b586cef2d9466f64cccd9 |
"""
Inference model with Gaussian process for sampling isoform proportions.
"""
import numpy as np
def erf(x):
"""error function approximation, with maximum error 1.5e-7.
"""
# save the sign of x
if x >= 0: sign = 1
else: sign = -1
x = abs(x)
# constants
a1 = 0.254829592
a2 = -0.2... | huangyh09/diceseq | diceseq/models/model_GP.py | Python | apache-2.0 | 13,423 | [
"Gaussian"
] | 60faa053924527989091a0f52971df4b6487274708c9f7557b9e4f8662f97b53 |
"""
Augmenters that apply affine transformations or other similar augmentations.
Do not import directly from this file, as the categorization is not final.
Use instead
`from imgaug import augmenters as iaa`
and then e.g. ::
seq = iaa.Sequential([
iaa.Affine(...),
iaa.PerspectiveTransform(...)
... | nektor211/imgaug | imgaug/augmenters/geometric.py | Python | mit | 60,930 | [
"Gaussian"
] | 52b4106ccf356e7ba001d4d2892b707e8f8c514905fecaf824ba6e0cc7bf074a |
'''
__author__ = 'Brian Chow'
__date__ = '2013-07-29'
4 degree and rare event feature engineering, fit to logistic regression model
'''
from numpy import array, hstack
from sklearn import linear_model
from scipy import sparse, stats
from kaggle import *
import numpy as np
import pandas as pd
SEED = 42
... | bachow/kaggle-amazon-contest | cutoffs.py | Python | mit | 5,055 | [
"Brian"
] | acfca9c0ab8e3b8b54b07874db80ad508b665a3064612332522ceb9d1a983850 |
"""
======================================
Sparse inverse covariance estimation
======================================
Using the GraphicalLasso estimator to learn a covariance and sparse precision
from a small number of samples.
To estimate a probabilistic model (e.g. a Gaussian model), estimating the
precision matri... | manhhomienbienthuy/scikit-learn | examples/covariance/plot_sparse_cov.py | Python | bsd-3-clause | 5,149 | [
"Gaussian"
] | 4c2f7c00691ad663733a591fb48cbff40b1a9c0f9e6b32473bf6b459cfdc9fcf |
# Copyright 2017 Andrey Sobolev, Tilde Materials Informatics (Berlin)
# This file is a part of quantum_esperanto project. The project is licensed under the MIT license.
# See the LICENSE file in the project root for license terms.
from setuptools import setup, Extension
from quantum_esperanto import __version__
# ch... | tilde-lab/DFTXMLParser | setup.py | Python | mit | 2,067 | [
"VASP"
] | 47948053db39853cb61bbf0afc022cc85286b576e6cc3dd223a1e6ec220478d9 |
###########################################################
# Demo WPS service for testing and debugging.
#
# See the werkzeug documentation on how to use the debugger:
# http://werkzeug.pocoo.org/docs/0.12/debug/
###########################################################
import os
import psutil
import click
from jin... | bird-house/flyingpigeon | flyingpigeon/cli.py | Python | apache-2.0 | 6,165 | [
"VisIt"
] | 7404a0899c464a638f8984a70cd1c0b31290ad7da2f7841f169de2e787d35618 |
#!/usr/bin/python
import computefarm as cf
from computefarm.farm import depth_first, breadth_first
import random
import logging
import numpy as np
HOUR = 60 * 60
default_queue_properties = {
'grid': { 'num': 0, 'mem': 750, 'avg': HOUR, 'std': 0.6 * HOUR},
'prod': { 'num': 0, 'avg': 8 * HOUR, 'std... | fubarwrangler/atlassim | simulation.py | Python | gpl-2.0 | 6,264 | [
"Gaussian"
] | 4945da02f5956d923e33e9203a93a635eea72da8aa4adc950a506e4e64214aa4 |
from __future__ import print_function, division
INPUT_LAYERS = ['Data', 'ImageData', 'Input']
# Layers that only support elwise
ELWISE_LAYERS = ['Deconvolution']
# Layers that support parameters
PARAMETER_LAYERS = ['Convolution', 'InnerProduct']+ELWISE_LAYERS
# All supported layers
SUPPORTED_LAYERS = ['ReLU', 'Sigmoid... | philkr/magic_init | magic_init.py | Python | bsd-2-clause | 17,395 | [
"Gaussian"
] | e675c6ca91ec19690804270e2c5c7d5272747719c62b66004fbca1d46b32c569 |
# Merge active and previous version's generated next major version candidate
# shadow. This involve simultaneously traversing both FileDescriptorProtos and:
# 1. Recovering hidden_envoy_depreacted_* fields and enum values in active proto.
# 2. Recovering deprecated (sub)message types.
# 3. Misc. fixups for oneof metada... | lizan/envoy | tools/protoxform/merge_active_shadow.py | Python | apache-2.0 | 10,444 | [
"VisIt"
] | b711c4f88628dd4286844fd0b1b84b4f07034ee81aaa74828eb49798110f4667 |
# Copyright 2012-2014 Brian May
#
# This file is part of python-tldap.
#
# python-tldap is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.... | brianmay/python-tldap | docs/settings.py | Python | gpl-3.0 | 828 | [
"Brian"
] | 513d8142f2d22ab3a6fc0df484710b0b0d96b28c64406391d0ec4a0e59fe11e6 |
#!/usr/bin/env python
# Copyright 2015 The Kubernetes Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by appli... | girishkalele/test-infra | verify/verify-boilerplate.py | Python | apache-2.0 | 5,549 | [
"VisIt"
] | 63423875b8eafdec0d4061304dc5a5ef3e9e28e8cfef26afc70652d19f087a12 |
import numpy as np
from ase.atoms import Atom, Atoms
from ase.calculators.singlepoint import SinglePointDFTCalculator
from ase.calculators.singlepoint import SinglePointKPoint
def read_gpaw_text(fileobj, index=-1):
if isinstance(fileobj, str):
fileobj = open(fileobj, 'rU')
notfound = []
def inde... | grhawk/ASE | tools/ase/io/gpawtext.py | Python | gpl-2.0 | 6,114 | [
"ASE",
"GPAW"
] | 6c8454043c3e2574faa6ec097aaf2456f51d02d0db1337f6eff625f7d3d8cbaa |
# -*- coding: utf-8 -*-
"""This module tests various ways how to set up the provisioning using the provisioning dialog."""
from datetime import datetime, timedelta
import fauxfactory
import pytest
import re
from widgetastic.utils import partial_match
from cfme import test_requirements
from cfme.base.login import Base... | quarckster/cfme_tests | cfme/tests/infrastructure/test_provisioning_dialog.py | Python | gpl-2.0 | 11,178 | [
"VisIt"
] | d7ae754cd3577758b25ef3f4887795284e40f671da4d470bf601e7b247ada866 |
# Copyright 2012 by Wibowo Arindrarto. All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
"""Bio.SearchIO parser for BLAST+ tab output format, with or without comments."""
import ... | updownlife/multipleK | dependencies/biopython-1.65/build/lib.linux-x86_64-2.7/Bio/SearchIO/BlastIO/blast_tab.py | Python | gpl-2.0 | 33,684 | [
"BLAST",
"Biopython"
] | ee0a236d39182344f2bf5280d5b38bc1ec5134abd23e2f7928bf86be1e282871 |
from itertools import chain, islice
from visitor import Visitor
from expr import ExpresionOut
from stmt import StatementOut
from op import OperatorOut
from slice import SliceOut
class ExcepthandlerOut(Visitor):
@classmethod
def visit_ExceptHandler(self, ast, *a, **k):
type = (ExpresionOut.visit(ast.type, *a, *... | Neppord/py2py | py2py_lib/out/__init__.py | Python | mit | 858 | [
"VisIt"
] | ef2771f4b23416be29f2ae1c4595a9c170a1a640b5b7fa0b050b0b07c220e52d |
# -*- coding: utf-8 -*-
"""
Acceptance tests for studio related to the outline page.
"""
import itertools
import json
from datetime import datetime, timedelta
from unittest import skip
from pytz import UTC
from base_studio_test import StudioCourseTest
from common.test.acceptance.fixtures.config import ConfigModelFixt... | jolyonb/edx-platform | common/test/acceptance/tests/studio/test_studio_outline.py | Python | agpl-3.0 | 87,380 | [
"VisIt"
] | ead79505df725d3f9686e36b62e254bf0939b00c72971d57c37ef7a8193044db |
import os
import numpy as np
from ase import Atom, Atoms
from ase.structure import bulk
from ase.units import Hartree, Bohr
from gpaw import GPAW, FermiDirac
from gpaw.response.bse import BSE
from ase.dft import monkhorst_pack
from gpaw.mpi import rank
GS = 1
bse = 1
check = 1
if GS:
kpts = (4,4,4)
a = 5.43... | ajylee/gpaw-rtxs | gpaw/test/bse_silicon.py | Python | gpl-3.0 | 1,554 | [
"ASE",
"GPAW"
] | 48a6e78bd14bfbeb56e2b9f5449715166b7696c655ab6aefa234ca2b56d5593c |
#
#
# Copyright (C) 2001-2005 Ichiro Fujinaga, Michael Droettboom, and Karl MacMillan
#
# This program is free software; you can redistribute it and/or
# modify it under the terms of the GNU General Public License
# as published by the Free Software Foundation; either version 2
# of the License, or (at your option) any... | DDMAL/Gamera | gamera/plugins/convolution.py | Python | gpl-2.0 | 16,256 | [
"Gaussian"
] | d3b41b37a1210a9bf553941b146265f6a9935115854bffa640d828f9dcebe08e |
#pylint: disable=C0111
#pylint: disable=W0621
# Disable the "wildcard import" warning so we can bring in all methods from
# course helpers and ui helpers
#pylint: disable=W0401
# Disable the "Unused import %s from wildcard import" warning
#pylint: disable=W0614
# Disable the "unused argument" warning because lettuce... | pelikanchik/edx-platform | common/djangoapps/terrain/steps.py | Python | agpl-3.0 | 6,704 | [
"VisIt"
] | 6b6b8a30716592b3bf6f3f3a860d9bd5907127049bb645f0e98eb4a6fd464861 |
"""
CloudEndpoint is a base class for the clients used to connect to different
cloud providers
"""
import os
import ssl
import time
from libcloud import security
from libcloud.compute.types import Provider
from libcloud.compute.providers import get_driver
from libcloud.common.exceptions import BaseHTTPError
# ... | DIRACGrid/DIRAC | src/DIRAC/Resources/Cloud/CloudEndpoint.py | Python | gpl-3.0 | 18,088 | [
"DIRAC"
] | 7bcdb0d4e7f270a7be03b329caf78063347e0d275296e1f962d4cb2801050d68 |
__author__ = 'Daan Wierstra and Tom Schaul'
from itertools import chain
from scipy import zeros
from pybrain.structure.networks.feedforward import FeedForwardNetwork
from pybrain.structure.networks.recurrent import RecurrentNetwork
from pybrain.structure.modules.neuronlayer import NeuronLayer
from pybrain.structure.... | Ryanglambert/pybrain | pybrain/structure/networks/neurondecomposable.py | Python | bsd-3-clause | 4,341 | [
"NEURON"
] | adbd4a70f33da7a9753355fa0c9018ec0ba6a73c18af1e3a4f831c14b9b9e809 |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2022 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This file is part of Psi4.
#
# Psi4 is free software; you can redistribute it and/or modify
#... | psi4/psi4 | psi4/driver/diatomic.py | Python | lgpl-3.0 | 11,346 | [
"Psi4"
] | fdf6072018ea616ab13276b9feff55310bd684c2a7016a82fb6bc2edeebc1f28 |
#! /usr/bin/env python
# ==========================================================================
# This scripts performs unit tests for the csmodelsois tool.
#
# Copyright (C) 2017-2020 Josh Cardenzana
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Pu... | ctools/ctools | test/test_csmodelsois.py | Python | gpl-3.0 | 8,410 | [
"Gaussian"
] | d110ccf521516698e70a5c4a8731b5db84adfd941014a50495b6b0214d11de8d |
# Licensed under a 3-clause BSD style license - see LICENSE.rst
"""
Methods for selecting the bin width of histograms
Ported from the astroML project: http://astroml.org/
"""
import numpy as np
from . import bayesian_blocks
__all__ = ['histogram', 'scott_bin_width', 'freedman_bin_width',
'knuth_bin_width... | MSeifert04/astropy | astropy/stats/histogram.py | Python | bsd-3-clause | 12,617 | [
"Gaussian"
] | efd01eb34d6bcab87872359642cd345141795ea76b6d037aad8885f1e86d4a60 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
# ---------------------------------------------------------------------
# Copyright (c) 2012 Michael Hull.
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions
# are m... | mikehulluk/morphforge | src/morphforgecontrib/tags/__init__.py | Python | bsd-2-clause | 3,265 | [
"NEURON"
] | fade114507d2f44f96c84918bd102ec984782fb1e64a11e12a7ddfad06c0a359 |
# Copyright 2008-2014 Nokia Solutions and Networks
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable l... | eric-stanley/robotframework | src/robot/model/visitor.py | Python | apache-2.0 | 1,995 | [
"VisIt"
] | 793a28e3cf8a3de4fb67499d3a63c4f3a0e8e0bb8c731b9933aafd40d3f3f1da |
def load_parameters():
"""
Loads the defined hyperparameters
:return parameters: Dictionary of loaded parameters
"""
# Input data params
TASK_NAME = 'infreq' #out-domain' # Task name
DATASET_NAME = '10' # Dataset name
SRC_LAN = 'en' ... | Sasanita/nmt-keras | config.py | Python | mit | 17,209 | [
"Gaussian"
] | 50945715e80ee3b44879b3d1295267085f1cdd3deeea44f3bae8a235ef11b615 |
from __future__ import print_function, division
import unittest, numpy as np
from pyscf import gto, scf
from pyscf.nao import gw
class KnowValues(unittest.TestCase):
def test_gw_h2_ae_spin_rf0_speed(self):
""" This is GW """
mol = gto.M( verbose = 1,
atom = '''H 0 0 0; H 0 0 0.5; H 0 0 1.0; H 0 0 1.... | gkc1000/pyscf | pyscf/nao/test/test_0064_gw_h_chain.py | Python | apache-2.0 | 972 | [
"PySCF"
] | e1cfc749c3fa4f32a9eeefb9b4241ca4b12270e3421b254e3064dfb6ec4a171b |
"""
Course Outline page in Studio.
"""
import datetime
from bok_choy.page_object import PageObject
from bok_choy.promise import EmptyPromise
from selenium.webdriver import ActionChains
from selenium.webdriver.support.ui import Select
from selenium.webdriver.common.keys import Keys
from common.test.acceptance.pages.c... | longmen21/edx-platform | common/test/acceptance/pages/studio/overview.py | Python | agpl-3.0 | 38,374 | [
"VisIt"
] | 79c99b93a86024f8b2631464b7101baf1461486cba09c315cdb923234bf39658 |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2017 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This file is part of Psi4.
#
# Psi4 is free software; you can redistribute it and/or modify
#... | jH0ward/psi4 | psi4/driver/procrouting/dft_funcs/__init__.py | Python | lgpl-3.0 | 940 | [
"Psi4"
] | 84908789daef5de80d3e1424dc09a07e6a1ea005a0ab7fb87bc5aa995d5a4dcd |
''' ------------------------------------- '''
''' Plot DTW for joint angles '''
for i_key,key in enumerate(skels_subactivity_angles):
figure(key)
print "{} iterations of {}".format(len(skels_subactivity_angles[key]), key)
for i_iter in range(len(skels_subactivity_angles[key])):
print 'iter', i_iter
for i,ang ... | colincsl/pyKinectTools | pyKinectTools/dataset_readers/CAD_Repr.py | Python | bsd-2-clause | 12,563 | [
"Gaussian"
] | 8de62bb299e318af731b92343367436ca805acaadb1e9e065ac3baa35a0653cc |
# -*- coding: utf-8 -*-
# vi:si:et:sw=4:sts=4:ts=4
##
## Copyright (C) 2005-2013 Async Open Source <http://www.async.com.br>
## All rights reserved
##
## This program is free software; you can redistribute it and/or modify
## it under the terms of the GNU Lesser General Public License as published by
## the Free Softw... | andrebellafronte/stoq | stoqlib/gui/editors/sellableeditor.py | Python | gpl-2.0 | 22,084 | [
"VisIt"
] | c16912036f160f264603ca234ed5d80814e279404284046a97b58cfe02098dac |
########################################################################
# File: File.py
# Date: 2012/08/03 15:02:53
########################################################################
"""
:mod: File
.. module: File
:synopsis: RMS operation file
operation file
"""
from __future__ import absolute_import
from __... | yujikato/DIRAC | src/DIRAC/RequestManagementSystem/Client/File.py | Python | gpl-3.0 | 5,634 | [
"DIRAC"
] | aea55f9ac843c2ec4e2955e0cfd267f985276e2a6bc0c6ebb1e63db0fd23f0ca |
import tensorflow as tf
import matplotlib.pyplot as plt
from random import uniform
import numpy as np
## Placeholders for x and y variables
x = tf.placeholder("float", None)
y = tf.placeholder("float", None)
## Output = (x^3)*(y^2) - 7(x^2)*y + x - 12
output = (x ** 3) * (y ** 2) - 7 * (x **2) * y + x - 12
## Number... | mewturn/Python | 50.021 Artificial Intelligence/tensorFDPractice.py | Python | mit | 1,380 | [
"Gaussian"
] | 80c5c0d5a51a1e7505585e415d642ca250f30084a0250b378e1723bed798ae90 |
# coding: utf-8
from __future__ import unicode_literals, division, print_function
import unittest
from pymatgen.io.abinitio.launcher import ScriptEditor
class ScriptEditorTest(unittest.TestCase):
def test_base(self):
"base test"
se = ScriptEditor()
se.shebang()
se.declare_var("F... | Dioptas/pymatgen | pymatgen/io/abinitio/tests/test_launcher.py | Python | mit | 578 | [
"pymatgen"
] | 703bd6c6c173b2c740a0de87c636cceac71893cfc40a3821e1bdf6c12d3aeea3 |
import typing
import symtab
def signature(ret_type, param_types):
def inside_decorator(function):
function._ret_type = ret_type
function._param_types = param_types
return function
return inside_decorator
@signature(typing.Pointer(typing.Int8), [typing.Int32, typing.Int32])
def Placed... | Jokymon/hpcs | hpcs_builtins.py | Python | gpl-3.0 | 968 | [
"VisIt"
] | 93c913a4905615097509edca10eebea80aeaf80379ad7efca85d786351606dd7 |
# Copyright (c) 2012 OpenStack Foundation
# All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License"); you may
# not use this file except in compliance with the License. You may obtain
# a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless ... | yatinkumbhare/openstack-nova | nova/tests/unit/compute/test_resource_tracker.py | Python | apache-2.0 | 61,016 | [
"exciting"
] | dc6a22b3fdbf9fc6204cb93e163e24123358165f0955d37806d58d984ec26ebb |
# -*- coding: utf-8 -*-
from gettext import gettext as _
NAME = _('North America')
STATES = [
(_('United States'), 254, 388, 540, 0),
(_('Canada'), 253, 320, 283, 0),
(_('Alaska'), 252, 133, 144, 0),
(_('México'), 251, 398, 791, 0),
(_('Cuba'), 250, 681, 728, 0),
(_('Guatemala'), 249, 554, 84... | AlanJAS/iknowAmerica | recursos/0adelnorte/datos/0adelnorte.py | Python | gpl-3.0 | 6,543 | [
"COLUMBUS"
] | e39c5c94396e5f38c53f96e38c087d6141b549b435ba45a8cfbe6eb125d06d46 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""
CueProc setup.
Copyright (c) 2006-2008 by Nyaochi
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at y... | rinrinne/cueproc-alternative | src/setup.py | Python | gpl-2.0 | 1,590 | [
"VisIt"
] | 216a3212c3546f6b49b19337b642a5775c4ce0e085eb863e421592e4ce2bca64 |
#!/usr/bin/env python
import MySQLdb as mysql
import velvet_assembler_notrimmer
import velvet_optimize
import abyss_assembler
import clc_assembler
import wgs_assembler
import supersembler
import spades_assembler
#import masurca_assembler
import mira_assembler
import worst_assembler
#import idba_assembler
import mix... | crashfrog/Dispatch | assembly_dispatch.py | Python | unlicense | 13,877 | [
"Bowtie"
] | 4814b3c0c23ff553a63013b96c24f7bc0754fdb1c43e1241434b87550787f086 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
from __future__ import division, unicode_literals
import re
import warnings
from operator import itemgetter
from six import string_types
from tabulate import tabulate
from monty.io import zopen
from monty.jso... | aykol/pymatgen | pymatgen/io/feff/inputs.py | Python | mit | 30,411 | [
"FEFF",
"pymatgen"
] | 58bc906aba8d2087f13feb54df54c9bd4a381e3e343d1127df2fa493bc4eea22 |
""" Storage Factory Class - creates instances of various Storage plugins from the Core DIRAC or extensions
This Class has three public methods:
getStorageName(): Resolves links in the CS to the target SE name.
getStorage(): This creates a single storage stub based on the parameters passed in a dict... | vmendez/DIRAC | Resources/Storage/StorageFactory.py | Python | gpl-3.0 | 14,518 | [
"DIRAC"
] | 3718f4b80c077d2b71bcd49e7d4069cece10f57fe6404fb2e3e6515610d8a05a |
# Copyright 2010-2017, The University of Melbourne
# Copyright 2010-2017, Brian May
#
# This file is part of Karaage.
#
# Karaage is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License... | brianmay/karaage | karaage/institutes/models.py | Python | gpl-3.0 | 5,691 | [
"Brian"
] | 2b5cdef5e2e584e7876c78543763e8341bf859df3435164bd74e357bb57a2636 |
import deepchem as dc
import numpy as np
import tensorflow as tf
import unittest
from deepchem.models.tensorgraph import layers
from flaky import flaky
def generate_batch(batch_size):
"""Draw training data from a Gaussian distribution, where the mean is a conditional input."""
means = 10 * np.random.random([batc... | ktaneishi/deepchem | deepchem/models/tensorgraph/tests/test_gan.py | Python | mit | 3,900 | [
"Gaussian"
] | 16cf5084cb866a887e4384604d0c08afd3866dffbe4cb0ac2212d286cfc89567 |
# -*- coding: iso-8859-1 -*-
# Copyright (C) 2007-2014 CEA/DEN, EDF R&D
#
# This library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License as published by the Free Software Foundation; either
# version 2.1 of the License, or (at your option) any la... | FedoraScientific/salome-paravis | src/Plugins/MEDReader/Test/testMEDReader8.py | Python | lgpl-2.1 | 4,484 | [
"ParaView"
] | e8e8681cec027aae843ec54cd816527eff9853c4b5b24490bc537eb7f6ba941c |
from pygraph.classes.digraph import digraph
from pygraph.algorithms.searching import depth_first_search
import sys
import re
RHETORICAL_RELATIONS = [
"continuation",
"narration",
"result",
"contrast",
"parallel",
"precondition",
"consequence",
"conditional",
"alternation",
"back... | Remper/learningbyreading | src/unboxer/drg.py | Python | gpl-2.0 | 5,123 | [
"VisIt"
] | 33534cb04dfbdbc616c1cd2c641aadd7ddf66fddac4c8fb6675587b22e64bc8e |
#! /usr/bin/env python3
# -*- coding: UTF-8 -*-
"""
Data literal storing emoji names and unicode code points
Copy of https://github.com/carpedm20/emoji/blob/master/emoji/unicode_codes.py
Attributes:
EMOJI_ALIAS_UNICODE (dict): Emoji alias to unicode mapping
EMOJI_UNICODE (dict): Emoji name to unicode mapping... | janesolomon/twitter_search | twitter_search/unicode_codes.py | Python | mit | 306,254 | [
"FLEUR",
"Octopus"
] | 7ed3d005c905f8e4258ffe4269f5809848ab12170254c6a32a0c019dbaee47ea |
# Copyright (c) 2012 The Chromium Authors. All rights reserved.
# Use of this source code is governed by a BSD-style license that can be
# found in the LICENSE file.
UA_TYPE_MAPPING = {
'desktop':
'Mozilla/5.0 (Macintosh; Intel Mac OS X 10_7_3) '
'AppleWebKit/535.19 (KHTML, like Gecko) '
'Chrome/18... | leighpauls/k2cro4 | tools/telemetry/telemetry/user_agent.py | Python | bsd-3-clause | 1,023 | [
"Galaxy"
] | f171f32ce641e46be86834fa418b882510c0d0584139c5123ce77cb1400e51e1 |
# -*- coding: utf-8 -*-
#
# test_connect_array_fixed_outdegree.py
#
# This file is part of NEST.
#
# Copyright (C) 2004 The NEST Initiative
#
# NEST is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either versi... | hakonsbm/nest-simulator | pynest/nest/tests/test_connect_array_fixed_outdegree.py | Python | gpl-2.0 | 3,336 | [
"NEURON"
] | f97d311440df882d3d68030b886946530606fcb49fe686505076d40d1b096e57 |
# -*- coding: utf-8 -*-
import moose
print( 'Using moose from %s. VERSION=%s' % (moose.__file__, moose.__version__) )
import numpy as np
import chan_proto
import param_chan
t_stop = 10
dend_diameter = 2.2627398e-6
dend_length = 1.131369936e-6
Cm = 4.021231698e-12
Rm = 1865100032
Em = -0.07100000232
Vm_0 = -0.0705
dt... | BhallaLab/moose | moose-core/tests/python/test_difshells.py | Python | gpl-3.0 | 6,706 | [
"MOOSE"
] | a24d7fbfb7280e339a233e0396e00ec31a04d72e6c1d5894cf86f2f178b0803c |
#!/usr/bin/env python
import os
import sys
try:
from setuptools import setup
except ImportError:
from distutils.core import setup
if sys.argv[-1] == 'publish':
os.system('python setup.py sdist upload')
sys.exit()
readme = open('README.rst').read()
doclink = """
Documentation
-------------
The full... | tripiti/beammaster | setup.py | Python | mit | 1,486 | [
"Gaussian"
] | be8b7172c4529d3b8ad8d110cc8c3beb18d9b2f0b0957f3930658d1fd2c86343 |
try:
from collections.abc import Iterable
except ImportError:
from collections import Iterable
import numpy as np
from menpo.base import MenpoMissingDependencyError
class Menpo3dMissingError(MenpoMissingDependencyError):
r"""
Exception that is thrown when an attempt is made to import a 3D
visuali... | patricksnape/menpo | menpo/visualize/base.py | Python | bsd-3-clause | 57,597 | [
"Gaussian"
] | 442ad4f1c04e661dd209dc74aa78fbdc49b0e9047c42fcabca51658a77856c3f |
from pylab import *
from math import exp, sqrt
from utils import *
# This module contains implementations of gaussian and bilateral kernels,
# as well as generic filtering functions
# The implementations work for d-dimensional grayscale images.
# applies a gaussian filter with standard deviation sigma to image im.
# ... | facundoq/ipim | tp1/py/filters.py | Python | gpl-3.0 | 4,987 | [
"Gaussian"
] | 1e0487104d19995e1c16c41c616209c709b772ccfa5b86c7fb7e563009db3701 |
from Classes import *
from Buttons import *
from Fuctions import *
ALL_DEVICES_LIST = []
ZONECONTROLLER_LIST = []
class DEVICE:
def Image(self,image):
self.image = image
ALL_DEVICES_LIST.append(image)
def GetImage(self):
return self.image
def ItsButton(self):
itsbutton = s... | kenshay/ImageScript | ProgramData/SystemFiles/Python/Lib/site-packages/elan/__OLD_SCRIPTS/Devices.py | Python | gpl-3.0 | 67,734 | [
"Elk"
] | 8b22c8b8be3697d73602877e955a1749d736229c3964aae35716c663b6ccb12e |
""" LineGraph represents line graphs both simple and stacked. It includes
also cumulative graph functionality.
The DIRAC Graphs package is derived from the GraphTool plotting package of the
CMS/Phedex Project by ... <to be added>
"""
from __future__ import absolute_import
from __future__ import division
fr... | yujikato/DIRAC | src/DIRAC/Core/Utilities/Graphs/LineGraph.py | Python | gpl-3.0 | 4,298 | [
"DIRAC"
] | 5b31a2f8d250341db9828c543ac181131986650fb853fe768b9022da1c219dba |
# -*- mode: C++; indent-tabs-mode: nil; c-basic-offset: 4; tab-width: 4; -*-
# vim: set tabstop=8 shiftwidth=4 softtabstop=4 expandtab:
"""Models used by ncharts django web app.
2014 Copyright University Corporation for Atmospheric Research
This file is part of the "django-ncharts" package.
The license and distribut... | nguyenduchien1994/django-ncharts | ncharts/models.py | Python | bsd-2-clause | 23,771 | [
"NetCDF"
] | f2c32db1ad51fbae0c0266e02ee15c04f7ecbce7a139c5787fa3e963fe2cb441 |
#
# Copyright (C) 2013,2014 The ESPResSo project
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any l... | jdegraaf/espresso | testsuite/python/ewald_gpu.py | Python | gpl-3.0 | 2,129 | [
"ESPResSo"
] | 4bee92ad729d9778411a549acd51fb76f2e5d2f38bdd451966db932cd9a11d77 |
# -*- coding: utf-8 -*-
# This file is part of QuTiP: Quantum Toolbox in Python.
#
# Copyright (c) 2014 and later, Alexander J G Pitchford
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are
# ... | anubhavvardhan/qutip | qutip/tests/test_control_pulseoptim.py | Python | bsd-3-clause | 38,320 | [
"Gaussian"
] | f1466548d1f1e3777af90d148ee003b449657302ae9c3cfb504e8e5dcfb1e2ca |
##############################################################################
# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-64... | mfherbst/spack | var/spack/repos/builtin/packages/nek5000/package.py | Python | lgpl-2.1 | 11,092 | [
"VisIt"
] | 3b45a2007ffbf0bc50801968be9d0374b661c3dfe045d974a7a53b86c908f8e5 |
# et.po
val = {"" : "Project-Id-Version: sheltermanager\nReport-Msgid-Bugs-To: FULL NAME <EMAIL@ADDRESS>\nPOT-Creation-Date: 2013-01-24 10:55+0000\nPO-Revision-Date: 2010-08-23 10:57+0000\nLast-Translator: lyyser <Unknown>\nLanguage-Team: Estonian <et@li.org>\nMIME-Version: 1.0\nContent-Type: text/plain; charset=UTF-8... | aubzen/sheltermanager | src/locale/locale_et.py | Python | gpl-3.0 | 90,001 | [
"Amber",
"VisIt"
] | b5911bd8ae96fd0bbf42377914d94f1a74e26b31523a030a36b90c3c92d350c4 |
"""Processing of implementation manifests.
A manifest is a string representing a directory tree, with the property
that two trees will generate identical manifest strings if and only if:
- They have extactly the same set of files, directories and symlinks.
- For each pair of corresponding directories in the two se... | dabrahams/zeroinstall | zeroinstall/zerostore/manifest.py | Python | lgpl-2.1 | 18,586 | [
"VisIt"
] | beb67ff9acf394dbaf0138cff304e0865ce7e07e1dfac0ddddba63b6606d1b63 |
from __future__ import print_function, division
from sympy.core.add import Add
from sympy.core.compatibility import as_int, is_sequence, range
from sympy.core.exprtools import factor_terms
from sympy.core.function import _mexpand
from sympy.core.mul import Mul
from sympy.core.numbers import Rational
from sympy.core.nu... | NikNitro/Python-iBeacon-Scan | sympy/solvers/diophantine.py | Python | gpl-3.0 | 98,058 | [
"Gaussian"
] | f712424347cf982406ab6a29006de2920e658837f99abd5ccf48bf3b4ac2c4bc |
## INFO ########################################################################
## ##
## pypp ##
## ==== ... | petervaro/pypp | pypp.py | Python | gpl-3.0 | 6,571 | [
"VisIt"
] | a9a1d16acce2e0e9ae3cbd552ef8e623194c7e8c54f9b04ea300474efba3d5c8 |
# -*- coding: utf-8 -*-
# vi:si:et:sw=4:sts=4:ts=4
##
## Copyright (C) 2008 Async Open Source <http://www.async.com.br>
## All rights reserved
##
## This program is free software; you can redistribute it and/or modify
## it under the terms of the GNU Lesser General Public License as published by
## the Free Software F... | andrebellafronte/stoq | stoqlib/gui/editors/purchaseeditor.py | Python | gpl-2.0 | 6,195 | [
"VisIt"
] | 682ddaded32e5218eadd9985ced91e10e1d0c2e446be92d488d7fdd4857f5b31 |
"""
Module to set up run time parameters for Clawpack.
The values set in the function setrun are then written out to data files
that will be read in by the Fortran code.
"""
import os
import numpy as np
#------------------------------
def setrun(claw_pkg='amrclaw'):
#------------------------------
""... | clawpack/adjoint | paper2_examples/acoustics_2d_ex4/adjoint/setrun.py | Python | bsd-2-clause | 11,357 | [
"NetCDF"
] | d5d5849e53f24e9fb67a0c255c5f18a9ede9b8acc8bf85ed171b3173f5d23ec4 |
#!/usr/bin/env python
# Copyright (c) 2012 The Chromium Authors. All rights reserved.
# Use of this source code is governed by a BSD-style license that can be
# found in the LICENSE file.
# Copyright (C) 2008 Evan Martin <martine@danga.com>
"""A git-command for integrating reviews on Rietveld."""
from distutils.vers... | smikes/depot_tools | git_cl.py | Python | bsd-3-clause | 94,998 | [
"VisIt"
] | 122f6102eef0cd2c8a28211dc75eeda7abba381c819d344dc5e98da32c21b9d9 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
#
# --- BEGIN_HEADER ---
#
# __init__ - [insert a few words of module description on this line]
# Copyright (C) 2003-2011 The MiG Project lead by Brian Vinter
#
# This file is part of MiG.
#
# MiG is free software: you can redistribute it and/or modify
# it under the terms o... | heromod/migrid | mig/grsfs-fuse/fs/core/__init__.py | Python | gpl-2.0 | 988 | [
"Brian"
] | bac3396f3c51561e70d0c633b401016bba02e6c86175ab39b6cb36c02289d67f |
from lettuce import step, world
from lettuce.django import django_url
from nose.tools import assert_equal
from splinter.exceptions import ElementDoesNotExist
from django.contrib.auth.models import User
from storybase_user.models import Organization
from storybase_user.utils import format_user_name
@step(u'Given an adm... | denverfoundation/storybase | apps/storybase_user/features/organization-steps.py | Python | mit | 9,242 | [
"VisIt"
] | 49d3d59a1dab94c1a317a546ad9deb40790710d55b76ca90def70e62a3769718 |
import sys
import ast
import pprint
from numba import error
def iter_fields(node):
"""
Yield a tuple of ``(fieldname, value)`` for each field in ``node._fields``
that is present on *node*.
"""
for field in node._fields:
try:
yield field, getattr(node, field)
except Attr... | shiquanwang/numba | numba/astsix.py | Python | bsd-2-clause | 3,391 | [
"VisIt"
] | 42f7c345ab1da7d20b662758c203f28e4d5b8b210495fd09ffaa69eb530b3eb9 |
# Copyright (C) 2012,2013
# Max Planck Institute for Polymer Research
# Copyright (C) 2008,2009,2010,2011
# Max-Planck-Institute for Polymer Research & Fraunhofer SCAI
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the terms of t... | fedepad/espressopp | src/io/DumpGROAdress.py | Python | gpl-3.0 | 4,356 | [
"ESPResSo"
] | a8822513f181d8f99185ecb798251a1092681c3feef2abbfc166864f4425279e |
#!/usr/bin/env python
#
# $Id$
# ---------------------------------------------------------------------------
"""
Calculate a cryptohash on a file or standard input.
Usage:
**digest** *algorithm* [file] ...
The *digest* utility calculates message digests of files or, if no file
is specified, standard input. The ... | bmc/digest | digest/__init__.py | Python | bsd-3-clause | 3,604 | [
"Brian"
] | d6e37cd02622ab2b747fb35a9ebaa67f9565e7e7506578efc54c91fe447453bb |
#!/usr/bin/env python3
#Inne Lemstra and Michiel Merkx
"""Benchmark a short sequence aligner by calling on different subscripts
These subscripts are stored as libraries in the same directory
ScriptFlow:
This python pipeline consist of the following steps:
Get hardware info (using bash commands)
Run and time the preA... | MWJMerkx/pcfb_project | client/pipeline.py | Python | gpl-3.0 | 1,977 | [
"BWA"
] | 143455c05ec2879cf9d6c96a9b6bb2a7d44e841315acf609f8ec273b38d40e97 |
# -*- coding: utf-8 -*-
"""
End-to-end tests for the gating feature.
"""
from textwrap import dedent
from common.test.acceptance.fixtures.course import CourseFixture, XBlockFixtureDesc
from common.test.acceptance.pages.common.auto_auth import AutoAuthPage
from common.test.acceptance.pages.common.logout import LogoutPa... | ahmedaljazzar/edx-platform | common/test/acceptance/tests/lms/test_lms_gating.py | Python | agpl-3.0 | 9,099 | [
"VisIt"
] | 1e1b5d9853eff26a752e782746c106d7d3301d1196927c9e922fc465a88764c1 |
from django import template
from django.core.urlresolvers import reverse
from django.conf import settings
from pylmth.dom import *
from profiles.models import (DataDomain, Time, GeoRecord, GeoLevel,
Value, DataPoint, Indicator, IndicatorPart)
from profiles.utils import format_number as u... | ProvidencePlan/Profiles | communityprofiles/profiles/templatetags/profiles_tags.py | Python | mit | 28,156 | [
"MOE"
] | 4e7a1ef44b389d81aaeacb0472c2cfc74e4491930c1789d5d2ff2301121bc764 |
# -*- coding: utf-8 -*-
"""
@file
@brief Defines a sphinx extension which proposes a new version of ``.. toctree::``
which takes into account titles dynamically added.
"""
import os
import re
from docutils import nodes
from docutils.parsers.rst import Directive, directives
from sphinx.util import logging
from sphinx.er... | sdpython/pyquickhelper | src/pyquickhelper/sphinxext/sphinx_tocdelay_extension.py | Python | mit | 12,678 | [
"VisIt"
] | 530479ade605d516ac931287f0e1a10313e2da1e0eed5090f4d3ba025b9fc738 |
''' Script to test the simulator.
'''
import os
import tables as tb
import numpy as np
import unittest
import pylandau
from scipy.optimize import curve_fit
import matplotlib.pyplot as plt
from testbeam_analysis.tools import simulate_data, geometry_utils, analysis_utils, test_tools
testing_path = os.path.dirname(__fi... | YannickDieter/testbeam_analysis | testbeam_analysis/testing/test_simulation.py | Python | mit | 25,154 | [
"Gaussian"
] | 1d29aa793a611daae7f5262e0ca2bc696064a12b61dc0cf9328cb80390cb25f8 |
# -*- coding: utf-8 -*-
"""
.. _plot_source_alignment:
Source alignment and coordinate frames
======================================
The aim of this tutorial is to show how to visually assess that the data are
well aligned in space for computing the forward solution, and understand
the different coordinate frames inv... | adykstra/mne-python | tutorials/source-modeling/plot_source_alignment.py | Python | bsd-3-clause | 9,208 | [
"Mayavi"
] | bfcbd735a9ec9ddcf20216590c58b9cbaae900577943390b9a34022f121af924 |
#!/usr/bin/env python
"""
Delete a given production
"""
import DIRAC
from DIRAC.Core.Base.Script import Script
@Script()
def main():
# Registering arguments will automatically add their description to the help menu
Script.registerArgument("prodID: Production ID")
_, args = Script.parseCommandLine()
... | DIRACGrid/DIRAC | src/DIRAC/ProductionSystem/scripts/dirac_prod_delete.py | Python | gpl-3.0 | 751 | [
"DIRAC"
] | 65922a226ab46f03af139a0cfd85c44da0c14a00a0b2d9713cd8e363e48196ee |
#!/usr/bin/env python
'''uditransfer module: '''
from __future__ import generators
import sys
sys.path.append(".")
try:
from . import util
except:
import util
__version__ = "0.4"
__author__ = [
"Desheng Xu <dxu@ptc.com>"
]
__license__ = "PTC Only"
__contributors__ = "Neil, Brian "
#logFormatter = logg... | xudesheng/uditransfer | uditransfer/__init__.py | Python | apache-2.0 | 745 | [
"Brian"
] | 86d9d5e96f0a4cb581e3303a0ff70953fb3bbf3b3900eb958f409b4c399cb9a9 |
Subsets and Splits
No community queries yet
The top public SQL queries from the community will appear here once available.