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import py
import sys
import pytest
class CommonFSTests(object):
def test_constructor_equality(self, path1):
p = path1.__class__(path1)
assert p == path1
def test_eq_nonstring(self, path1):
p1 = path1.join('sampledir')
p2 = path1.join('sampledir')
assert p1 == p2
d... | asajeffrey/servo | tests/wpt/web-platform-tests/tools/third_party/py/testing/path/common.py | Python | mpl-2.0 | 16,410 | [
"VisIt"
] | 784ae43f0e784f384f9a1552fcd1399245841c0d542dc062bf273393376f8f28 |
#!/usr/bin/env python
# encoding: utf-8
# PYTHON_ARGCOMPLETE_OK
# === IMPORTANT ====
# NOTE: In order to support non-ASCII file names,
# your system's locale MUST be set to 'utf-8'
# CAVEAT: DOESN'T seem to work with proxy, the underlying reason being
# the 'requests' package used for http communication... | liuycsd/bypy | bypy/bypy.py | Python | mit | 111,744 | [
"VisIt"
] | 0fe88c92c12aef07620d4490c92c5f8ed12ba0fc9c65584aaa5c975e1f993b14 |
# proxy module
from __future__ import absolute_import
from mayavi.version import *
| enthought/etsproxy | enthought/mayavi/version.py | Python | bsd-3-clause | 83 | [
"Mayavi"
] | 7602a2343d7c445e720c1be6d0988731f35242e21c78dc539819674dfcde6347 |
""" A script for updating the patient organization of a user.
This is a manage.py command. Run with --help for documentation.
Example usage:
To run on localhost:
> manage.py print_all_visits --org maventy
To run on production:
> manage.py print_all_visits --org maventy --remote
"""
import logging
from optparse im... | avastjohn/maventy_new | healthdb/management/commands/print_all_visits.py | Python | bsd-3-clause | 1,191 | [
"VisIt"
] | b5f51d2f99070d651de5c6b067f4b06da289337bf297590a8f22d72c57b71abc |
import numpy
import sys
from mmdlab.datareader import readfile_metgas_boxes
from mmdlab.utils import showable
from mmdlab.utils import saveimg
from mmdlab.utils import offscreen
from mmdlab.utils import init_mlab_scene
from mayavi import mlab
import time
import pylab
from numba import jit
from numba import float64, ... | detorto/mdvis | src/draw_points.py | Python | mit | 1,207 | [
"Mayavi"
] | d415c92a54156cb7918f297d554e6644ac03d7691dc4dfb6c81e59cfea9e2d61 |
#!/usr/bin/env python
import os
import re
from os import path
from subprocess import check_call
import logging
import tempfile
from contextlib import closing
import multiprocessing
MIN_SCORE = 0.01
#Fitness functions
#All fitnesses need to be > 0 and positive for selection functions to work!
class VinaFitness(object... | fergaljd/pep_ga | fitness/vina_fitness.py | Python | gpl-2.0 | 5,643 | [
"Pybel"
] | 1ab953b2ee28f67794179fa24fbd0a69ca10a06cd5c1bbde21ed234c7a205272 |
import hyperchamber as hc
import numpy as np
import torch
from .base_distribution import BaseDistribution
from ..gan_component import ValidationException
from torch.distributions import uniform
TINY=1e-12
class UniformDistribution(BaseDistribution):
def __init__(self, gan, config):
BaseDistribution.__ini... | 255BITS/HyperGAN | hypergan/distributions/uniform_distribution.py | Python | mit | 2,450 | [
"Gaussian"
] | c8dcc10a0f52712fc26353188f53de245ad1588ac34d48466cba80d03ab8a07f |
# Copyright (c) 2012 - 2014 the GPy Austhors (see AUTHORS.txt)
# Licensed under the BSD 3-clause license (see LICENSE.txt)
import numpy as np
from ..core import SparseGP
from ..inference.latent_function_inference import VarDTC
from .. import kern
from .. import util
class SparseGPCoregionalizedRegression(SparseGP):
... | SheffieldML/GPy | GPy/models/sparse_gp_coregionalized_regression.py | Python | bsd-3-clause | 3,030 | [
"Gaussian"
] | fca0000996f271742608de7df4d683aa8f473e94d9a9aad0447ea7e8d7584339 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
#
# --- BEGIN_HEADER ---
#
# startstore - [insert a few words of module description on this line]
# Copyright (C) 2003-2009 The MiG Project lead by Brian Vinter
#
# This file is part of MiG.
#
# MiG is free software: you can redistribute it and/or modify
# it under the terms o... | heromod/migrid | mig/shared/functionality/startstore.py | Python | gpl-2.0 | 1,022 | [
"Brian"
] | 78da60f625b348fe3c85e210c970f8def72b9593fd39f18123ee5ba25efdb66a |
""" Just listing the possible Properties
This module contains list of Properties that can be assigned to users and groups
"""
#: A host property. This property is used::
#: * For a host to forward credentials in a DISET call
TRUSTED_HOST = "TrustedHost"
#: Normal user operations
NORMAL_USER = "NormalUser"
#: CS Admin... | DIRACGrid/DIRAC | src/DIRAC/Core/Security/Properties.py | Python | gpl-3.0 | 1,966 | [
"DIRAC"
] | 16f18959c83e0b01c375e150c3198333b5a91c31a2052e785b75abade1e1e06e |
#!/usr/bin/python
# -*- coding: utf-8 -*-
#
# --- BEGIN_HEADER ---
#
# statusallexes - [insert a few words of module description on this line]
# Copyright (C) 2003-2009 The MiG Project lead by Brian Vinter
#
# This file is part of MiG.
#
# MiG is free software: you can redistribute it and/or modify
# it under the term... | heromod/migrid | mig/cgi-bin/statusallexes.py | Python | gpl-2.0 | 1,129 | [
"Brian"
] | c0f3624ba27b3b85b7f0e46881f21ec722072a39751d5f20050b1c85b25b001f |
#!/usr/bin/env python
#
# Copyright 2016 The AMP HTML Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unl... | nexxtv/amphtml | validator/js/webui/build.py | Python | apache-2.0 | 5,597 | [
"GULP"
] | 570a7ec570a42c866648fe99fa252e204ba9997b05e6175e3e70e761ccd4d173 |
# Licensed under the Apache License, Version 2.0 (the "License"); you may
# not use this file except in compliance with the License. You may obtain
# a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under t... | sjsucohort6/openstack | python/venv/lib/python2.7/site-packages/openstack/object_store/v1/_proxy.py | Python | mit | 10,117 | [
"Brian"
] | 2de35ae42f0a96092b44011c64301b761b68942a1461eb3717ce97b5368bda15 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
# freeseer - vga/presentation capture software
#
# Copyright (C) 2014 Free and Open Source Software Learning Centre
# http://fosslc.org
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published ... | Freeseer/freeseer | src/freeseer/tests/frontend/controller/test_validate.py | Python | gpl-3.0 | 3,391 | [
"VisIt"
] | 04b595870dab985632665a7c1bdee900b28d9fd790dae3c602e8c193d3fc81df |
# coding: utf-8
"""
This module defines the last object to be created during the picking,
i.e. the locus.
"""
from typing import Union, Dict, List, Set
import collections
import itertools
import operator
from collections import defaultdict
import pysam
from ..transcripts.pad import pad_transcript
from ..transcripts.tr... | lucventurini/mikado | Mikado/loci/locus.py | Python | lgpl-3.0 | 64,917 | [
"pysam"
] | 53bd6d920a694e1159550534f4c9ee3f759216ab4165cb559e00a9d9636e2496 |
#!/usr/bin/env python
#
# threat_note v3.0 #
# Developed By: Brian Warehime #
# Defense Point Security (defpoint.com) #
# October 26, 2015 #
#
import argparse
import csv
import hashlib
import io
import r... | brianwarehime/threat_note | threat_note/threat_note.py | Python | apache-2.0 | 39,764 | [
"Brian"
] | 5a687a25373758069aaded8f835ae03464f45c0f4daecdaea829240f555fe436 |
# MS STRING - NAMD
# -------------------------------------
# The main file for the python script that runs MS string calculations using NAMD
# as the engine.
# Jeremy Tempkin
# 11/6/13
#----------IMPORT------------
import sys
import time
import copy
import numpy as np
from subprocess import *
from fileIO import * # ... | jtempkin/enhanced-sampling-toolkit | est/string_method/main.py | Python | mit | 20,185 | [
"CHARMM",
"NAMD"
] | f521bb968623661a92fd93dbc12d25fad040d6c6e081d135a7a41629f88fa732 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
This module defines Entry classes for containing experimental data.
"""
__author__ = "Shyue Ping Ong"
__copyright__ = "Copyright 2012, The Materials Project"
__version__ = "0.1"
__maintainer__ = "Shyue Pi... | gmatteo/pymatgen | pymatgen/entries/exp_entries.py | Python | mit | 2,827 | [
"pymatgen"
] | 2f3ee86096ff0f2d6018f316a355f2db67fed15ba80ed123f4b6b42e113495b9 |
import matplotlib.pyplot as plt
import numpy as np
from sklearn.preprocessing import RobustScaler
from sklearn.preprocessing import StandardScaler
from sklearn.model_selection import GridSearchCV
# classifiers
from sklearn.neighbors import KNeighborsClassifier
from sklearn.neighbors import RadiusNeighborsClassifier
fr... | alod83/osiris | srp/train.py | Python | mit | 10,250 | [
"Gaussian"
] | a067ab9b5114e26c73822fdd59292c2f29533875dde0e359fd25ab2ab4c627f8 |
import logging
import urllib
from collections import defaultdict
from lxml import html
from django.conf import settings
from django.core.context_processors import csrf
from django.core.exceptions import PermissionDenied
from django.core.urlresolvers import reverse
from django.contrib.auth.models import User, Anonymo... | altsen/diandiyun-platform | lms/djangoapps/wechat/views.py | Python | agpl-3.0 | 47,026 | [
"VisIt"
] | e24c635006ae55b707e6101fc5ce4880c58a7414f63752374a352d527c5c4a2c |
SIMCACHE = {
'a': 0x0cc175b9c0f1b6a831c399e269772661,
'b': 0x92eb5ffee6ae2fec3ad71c777531578f,
'c': 0x4a8a08f09d37b73795649038408b5f33,
'd': 0x8277e0910d750195b448797616e091ad,
'e': 0xe1671797c52e15f763380b45e841ec32,
'f': 0x8fa14cdd754f91cc6554c9e71929cce7,
'g': 0xb2f5ff47436671b6e533d8dc3614845d,
'h': 0x2510c39011c5b... | likaiguo/simhashpy | simhash/simcache.py | Python | apache-2.0 | 785,241 | [
"ADF",
"ASE",
"BWA",
"CDK",
"EPW",
"Elk",
"MOE",
"VMD",
"VTK",
"xTB"
] | 4e21ea89f55a4909c25b7ce7773ec56bb800b14818304c53ffb9054e97dec50c |
# -*- coding: utf-8 -*-
# Copyright (C) 2009-2014 CEA/DEN, EDF R&D
#
# This library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License as published by the Free Software Foundation; either
# version 2.1 of the License, or (at your option) any later ve... | FedoraScientific/salome-hexablock | doc/test_doc/extrudeQuad/extrude_quad.py | Python | lgpl-2.1 | 2,051 | [
"VTK"
] | af989352d4ba19a56b9dd124cd525e66e1ef2d21e9a9cae7be18db160d096326 |
"""
Test courseware search
"""
import os
import json
from nose.plugins.attrib import attr
from ..helpers import UniqueCourseTest
from ...pages.common.logout import LogoutPage
from ...pages.studio.utils import add_html_component, click_css, type_in_codemirror
from ...pages.studio.auto_auth import AutoAuthPage
from ...... | dkarakats/edx-platform | common/test/acceptance/tests/lms/test_lms_courseware_search.py | Python | agpl-3.0 | 7,300 | [
"VisIt"
] | 7d184558e55567577b4c94957f62e56b9453bad9a5d3dfb8fbccff31d941df84 |
# ImageNet classes
# Taken from:
# https://gist.githubusercontent.com/yrevar/942d3a0ac09ec9e5eb3a/raw/238f720ff059c1f82f368259d1ca4ffa5dd8f9f5/imagenet1000_clsidx_to_labels.txt
IMAGENET_CLASSES = \
{0: 'tench, Tinca tinca',
1: 'goldfish, Carassius auratus',
2: 'great white shark, white shark, man-eater, man-eating s... | Britefury/deep-learning-tutorial-pydata2016 | imagenet_classes.py | Python | mit | 30,763 | [
"Bowtie",
"ESPResSo",
"Jaguar",
"ORCA"
] | 31ab36be5fefad39f78591ac37cc345943f3d7a51c00a77dd11dfefd9861bb3c |
# Copyright (C) 2016
# Max Planck Institute for Polymer Research
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the Licens... | fedepad/espressopp | src/tools/prepareComplexMolecules.py | Python | gpl-3.0 | 6,805 | [
"ESPResSo",
"Gromacs"
] | fd4fec37ca880c6025d917ba42f43c5fe100d2340a5ad1dd11fe72226ba7b285 |
"""
Tests for geography support in PostGIS
"""
from __future__ import unicode_literals
import os
from unittest import skipUnless
from django.contrib.gis.gdal import HAS_GDAL
from django.contrib.gis.geos import HAS_GEOS
from django.contrib.gis.measure import D
from django.contrib.gis.tests.utils import postgis
from dj... | diegoguimaraes/django | django/contrib/gis/tests/geogapp/tests.py | Python | bsd-3-clause | 4,650 | [
"VisIt"
] | ebf604b453b4f718ce53a93907817a86cf397d70c4ef7ed25aab248b1d2afbed |
import shutil
import os
import mdtraj as md
from openmoltools.utils import import_, enter_temp_directory, run_antechamber, create_ffxml_file
import logging
logger = logging.getLogger(__name__)
logging.basicConfig(level=logging.DEBUG, format="LOG: %(message)s")
# Note: We recommend having every function return *copie... | Clyde-fare/openmoltools | openmoltools/openeye.py | Python | gpl-2.0 | 15,515 | [
"MDTraj",
"OpenMM"
] | 834f0dfaedd002bc571ad28de77c458678a14ede92302473259ac54829bf5289 |
# (c) 2013-2014, Michael DeHaan <michael.dehaan@gmail.com>
# (c) 2015 Toshio Kuratomi <tkuratomi@ansible.com>
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either... | rmfitzpatrick/ansible | lib/ansible/executor/module_common.py | Python | gpl-3.0 | 40,314 | [
"VisIt"
] | 281a8c97eafdfa563da80b4dd3c3ebc7090efc799ec895c3c903b58bee8f7d94 |
#! /usr/bin/env python
'''
hmmerformat.py
takes input hmmscan output files (if using --domtblout option in hmmscan) and converts them to readable HTML
contact: jonathan.tietz@gmail.com
'''
# import modules
import csv, re, os, math, argparse, operator
from Bio import Entrez, Seq, SeqIO # BioPython
... | jtietz1/bioinf | hmmerformatdom.py | Python | gpl-3.0 | 10,154 | [
"BLAST",
"Biopython"
] | 527c6c8132d269ad44313eba8360ccfa0f2c3522fd27714a77e39124859769c0 |
"""Displays ImageData efficiently.
"""
# Author: Prabhu Ramachandran <prabhu_r@users.sf.net>
# Copyright (c) 2007, Enthought, Inc.
# License: BSD Style.
# Enthought library imports.
from traits.api import Instance, Bool, on_trait_change, \
Property
from traitsui.api import View, Group, Item
from tvtk.api impo... | dmsurti/mayavi | mayavi/modules/image_actor.py | Python | bsd-3-clause | 4,083 | [
"Mayavi",
"VTK"
] | d1fe7317490429ba8029fad1d02a824abccae374c007c833704f56b6dcab3765 |
"""
climatology2.py
Compute a multi-epoch (multi-day) climatology from daily SST Level-3 grids.
Simple code to be run on Spark cluster, or using multi-core parallelism on single machine.
"""
import sys, os, urlparse, urllib, re, time
import numpy as N
import matplotlib
matplotlib.use('Agg')
import matplotlib.pylab ... | dataplumber/nexus | climatology/clim/climatology2.py | Python | apache-2.0 | 21,756 | [
"Gaussian",
"NetCDF"
] | d11b51e3d1489668f5e25c569fec6580ad2b248a7cf5c0b6d1c49d6f100a8def |
#!/usr/bin/env python3
# ver 0.1 - coding python by Hyuntae Jung on 2/11/2017
# ver 0.2 - support pdb and dcd files for openmm on 5/8/2017
# ver 0.3 - support gro trajectory files for Monte Carlo on 6/6/2017
import argparse
parser = argparse.ArgumentParser(
formatter_class=argparse.ArgumentDefaultsHelpFormatt... | jht0664/Utility_python_gromacs | python/select-groups-dist.py | Python | mit | 7,784 | [
"MDAnalysis",
"OpenMM"
] | 1f8296477f22ce6c10d40a920f705c540266f910e265e6d384af2e4db62bf218 |
from DIRAC.AccountingSystem.private.Policies.JobPolicy import JobPolicy as myJobPolicy
gPoliciesList = {"Job": myJobPolicy(), "WMSHistory": myJobPolicy(), "Pilot": myJobPolicy(), "Null": False}
| DIRACGrid/DIRAC | src/DIRAC/AccountingSystem/private/Policies/__init__.py | Python | gpl-3.0 | 195 | [
"DIRAC"
] | 319ffb254dbe860471c7d61dbc8df95b5dfb61bfc432dfbdaa4063a5f93c739a |
"""
ast
~~~
The `ast` module helps Python applications to process trees of the Python
abstract syntax grammar. The abstract syntax itself might change with
each Python release; this module helps to find out programmatically what
the current grammar looks like and allows modifications of it.
... | FFMG/myoddweb.piger | monitor/api/python/Python-3.7.2/Lib/ast.py | Python | gpl-2.0 | 12,575 | [
"VisIt"
] | 280782a871e047aa888ac4b5ca06894f8ea892f2842be76249b9f9ffb2ff8fac |
# -*- coding: utf-8 -*-
#
# Copyright (C) 2009-2013 Red Hat, Inc.
# This file is part of python-fedora
#
# python-fedora is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License as published by the Free Software Foundation; either
# version 2.1 of the Lice... | fedora-infra/python-fedora | fedora/client/proxyclient.py | Python | lgpl-2.1 | 22,822 | [
"VisIt"
] | ac45b62a4a920eb0744c5203f8ae12e76cb9b933d0f8f2de0af21aa7daa8ea7a |
# $Id$
#
# Copyright (C) 2014 Seiji Matsuoka
#
# @@ All Rights Reserved @@
# This file is part of the RDKit.
# The contents are covered by the terms of the BSD license
# which is included in the file license.txt, found at the root
# of the RDKit source tree.
#
from rdkit.Chem.Draw.canvasbase import CanvasBase
f... | soerendip42/rdkit | rdkit/Chem/Draw/qtCanvas.py | Python | bsd-3-clause | 3,963 | [
"RDKit"
] | 93579aa271037017c343c253280f140460b89290156431bdaec9cd4347a83b8c |
# coding: utf-8
"""
Works for Abinit:
"""
from __future__ import unicode_literals, division, print_function
import os
import shutil
import time
import abc
import collections
import numpy as np
import six
import copy
from six.moves import filter
from monty.collections import AttrDict
from monty.itertools import chunks... | Dioptas/pymatgen | pymatgen/io/abinitio/works.py | Python | mit | 44,400 | [
"ABINIT",
"Gaussian",
"NetCDF",
"pymatgen"
] | b5c58aa0b3b3e58cabb88f7d741bdd8f7b03f7d644ed112fe78bc3b04966cac7 |
#!/usr/bin/env python
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
A convenience script engine to read Gaussian output in a directory tree.
"""
from __future__ import division, print_function
__author__ = "Shyue Ping Ong"
__copyright__ = "Copyright... | nisse3000/pymatgen | pymatgen/cli/gaussian_analyzer.py | Python | mit | 3,347 | [
"Gaussian",
"pymatgen"
] | 6c6159a9ecd364a514588e4c3343676a9cf156fe8f532eb86db874cb252c3e3a |
#
# This file is a part of Siesta Help Scripts
#
# (c) Andrey Sobolev, 2013
#
import numpy as np
from shs.geom import r
from abstract import OneTypeData, InteractingTypesData
class VAFData(OneTypeData):
""" Get VAF of evolution (type-wise)
NB: As it uses only one cell vector set, when calculating VAF for... | ansobolev/shs | shs/data/per_type.py | Python | mit | 6,972 | [
"SIESTA"
] | 94164bdcf5e3f20ae33dcc168df28091a631072f7ab00f45001e132f613dbb65 |
import os
import unittest
import tempfile
from datetime import datetime, timedelta
from dateutil.relativedelta import relativedelta
import pytest
import pytz
from pyaxiom.netcdf.grids import Collection
import logging
from pyaxiom import logger
logger.level = logging.INFO
logger.addHandler(logging.StreamHandler())
... | ocefpaf/pyaxiom | pyaxiom/tests/test_netcdf_collection.py | Python | mit | 9,573 | [
"NetCDF"
] | 683ae6f092d24a9517d8fb26c220dbb269decd464d08db244e1167e93b97d1f9 |
'''
synbiochem (c) University of Manchester 2015
synbiochem is licensed under the MIT License.
To view a copy of this license, visit <http://opensource.org/licenses/MIT/>.
@author: neilswainston
'''
# pylint: disable=too-many-public-methods
import unittest
import synbiochem.utils.chem_utils as chm_util
class Tes... | synbiochem/synbiochem-py | synbiochem/utils/test/test_chem_utils.py | Python | mit | 1,308 | [
"VisIt"
] | ab128ed42c04977d6fa27b1964504fbf00cacf4d14b51e745eb909c4d6127741 |
"""
Alternation module
Copyright (c) 2009 John Markus Bjoerndalen <jmb@cs.uit.no>,
Brian Vinter <vinter@nbi.dk>, Rune M. Friborg <rune.m.friborg@gmail.com>.
See LICENSE.txt for licensing details (MIT License).
"""
# Imports
import inspect
import types
import collections
import pickle
from pycsp.parallel.guard... | runefriborg/pycsp | pycsp/parallel/alternation.py | Python | mit | 11,461 | [
"Brian"
] | d299d49cd8b1595b28606faf22d5223de751dfcf01d4435012d3314cf2078187 |
#!/usr/bin/env python
"""
Convert data from Genbank format to GFF.
Usage:
python gbk_to_gff.py in.gbk > out.gff
Requirements:
BioPython:- http://biopython.org/
helper.py : https://github.com/vipints/GFFtools-GX/blob/master/helper.py
Copyright (C)
2009-2012 Friedrich Miescher Laboratory of the Max Pla... | vipints/oqtans | oqtans_tools/GFFtools/0.2/gbk_to_gff.py | Python | bsd-3-clause | 6,837 | [
"Biopython"
] | 06b5a6543aa7a346746f6d269acbc4718f30e21387591388e14eb8a4dc1e5564 |
"""
Order Steps
Steps file for Order.feature
"""
from os import getenv
import json
import requests
from behave import *
from compare import expect, ensure
from selenium.webdriver.common.by import By
from selenium.webdriver.support.ui import WebDriverWait
from selenium.webdriver.support import expected_conditions
from ... | DevOps17-Bravo/orders | features/steps/orders_steps.py | Python | apache-2.0 | 5,302 | [
"VisIt"
] | 44453d0c84a3087d7e53a8c6ec0d99abad3b76cb763e804c2f8dff25574461cc |
"""
Forest of trees-based ensemble methods.
Those methods include random forests and extremely randomized trees.
The module structure is the following:
- The ``BaseForest`` base class implements a common ``fit`` method for all
the estimators in the module. The ``fit`` method of the base ``Forest``
class calls th... | bnaul/scikit-learn | sklearn/ensemble/_forest.py | Python | bsd-3-clause | 95,540 | [
"Brian"
] | 858c76f48626546183deb057fe41ba472f17ff25db4e1d5f4fbf402d5be07307 |
from ase import *
from hotbit import Hotbit
from ase.lattice.cubic import FaceCenteredCubic
from hotbit.test.misc import default_param
import pylab as pl
from box import Atoms
for SCC in [True,False]:
timings=[]
norbs=[]
sccs=['non-SCC','SCC'][SCC]
for nx in [1,2,3,4,5]:
for ny in [1,2,3,4,5]... | pekkosk/hotbit | hotbit/test/size2.py | Python | gpl-2.0 | 1,736 | [
"ASE"
] | ddcd71ca679fecfb16e119fbd3fe24b9d3096bc08c6cb8b8cf315d19b0d82713 |
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
# Credit to Dr. Shyue Ping Ong for the template of the calculator
"""
This module implements a TEM pattern calculator.
"""
import json
import os
from collections import namedtuple
from fractions import Fraction
from functools... | vorwerkc/pymatgen | pymatgen/analysis/diffraction/tem.py | Python | mit | 27,037 | [
"CRYSTAL",
"pymatgen"
] | dec4eb1dbd6dd8fdeea7ef20de0a2956c99244de93c5b7f15393fa8c59c91bd6 |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2022 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This file is part of Psi4.
#
# Psi4 is free software; you can redistribute it and/or modify
#... | psi4/psi4 | psi4/driver/p4util/prop_util.py | Python | lgpl-3.0 | 4,828 | [
"Psi4"
] | 35e96927a29f760ba67b76e91eb3538880f5c88aefb834f181aa054810a6938f |
''' Volume filter
This example script shows how to filter a volume using the PySPIDER interface. This
script can be used to lowpass filter a volume or, alternatively, bandpass filter
the volume using SPIDER commands.
Note that the code contains a "comment", a line starting with a `#`. This
comment explains the code ... | ezralanglois/arachnid | arachnid/snippets/pyspider/filter_volume.py | Python | gpl-2.0 | 4,176 | [
"Gaussian"
] | eee892393d7056da56a21107557d4038f9908b7e53e274cac62fd63fcbe36d2b |
# Copyright 2018 Brian May
#
# This file is part of python-tldap.
#
# python-tldap is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# ... | brianmay/python-tldap | tldap/dict.py | Python | gpl-3.0 | 4,084 | [
"Brian"
] | d2a322ed0338aa1094c4e291337bc52ec469341fa8a48cca161428f597f404fd |
"""
The geometric sector decomposition routines.
"""
from .common import Sector, refactorize
from ..polytope import convex_hull, triangulate, Polytope
from ..algebra import Polynomial, ExponentiatedPolynomial, Product
import itertools, numpy as np, sympy as sp
# *********************** primary decomposition *******... | mppmu/secdec | pySecDec/decomposition/geometric.py | Python | gpl-3.0 | 14,294 | [
"DIRAC"
] | 1211476378b4c2df977fe92bbb4f65c6066d5aa580cba3f5218284bd4c961a7a |
# -*- coding: utf-8 -*-
"""Main IPython class."""
#-----------------------------------------------------------------------------
# Copyright (C) 2001 Janko Hauser <jhauser@zscout.de>
# Copyright (C) 2001-2007 Fernando Perez. <fperez@colorado.edu>
# Copyright (C) 2008-2011 The IPython Development Team
#
# Distribu... | wolfram74/numerical_methods_iserles_notes | venv/lib/python2.7/site-packages/IPython/core/interactiveshell.py | Python | mit | 138,880 | [
"VisIt"
] | 7f0fba82cc8fc6179acb96cce454fff68c60e5f2fc8a0057c3f965fa58f4acc3 |
#!/usr/bin/env python
import boto
import boto.sqs
import boto.sqs.jsonmessage
import os
import iris
import json
import time
import sys
sys.path.append(".")
from config import manifest
class Job(object):
""" message should be URI to OpenDAP """
def __init__(self, message):
body = json.loads(message.g... | met-office-lab/image-service-scheduler | scheduler.py | Python | lgpl-3.0 | 4,111 | [
"NetCDF"
] | 6bd0475c9cc3b1d472074bc510528866fef2a311a45c4492232e11620444b664 |
from __future__ import (absolute_import, print_function)
from mantid.kernel import VMD
import math
import unittest
class VMDTest(unittest.TestCase):
def test_default_construction_gives_object_with_single_dimension(self):
one = VMD()
self.assertEquals(1, one.getNumDims())
def test_constructor... | dymkowsk/mantid | Framework/PythonInterface/test/python/mantid/kernel/VMDTest.py | Python | gpl-3.0 | 4,558 | [
"VMD"
] | 64c0423ccdf391dfccfa9e4c8a1f8882711895462e36912bc778c406ba858eca |
# Load dependencies
import ovito.io.particles
# Load the native code module
import OpenBabelPlugin
# Inject selected classes into parent module.
ovito.io.particles.OpenBabelImporter = OpenBabelPlugin.OpenBabelImporter
ovito.io.particles.CIFImporter = OpenBabelPlugin.CIFImporter
| srinath-chakravarthy/ovito | src/plugins/openbabel/python/ovito/io/particles/openbabel/__init__.py | Python | gpl-3.0 | 281 | [
"OVITO"
] | 9b09621712fcb400506bcb29fcf32c0ec7ebe5591a2bf4882018ac7dbb997843 |
# -*- coding: utf-8 -*-
#
# This file is part of Invenio-Query-Parser.
# Copyright (C) 2014, 2015, 2016 CERN.
#
# Invenio-Query-Parser is free software; you can redistribute it and/or
# modify it under the terms of the GNU General Public License as
# published by the Free Software Foundation; either version 2 of the
# ... | tiborsimko/invenio-query-parser | invenio_query_parser/walkers/pypeg_to_ast.py | Python | gpl-2.0 | 4,234 | [
"VisIt"
] | 5f4d357283b0d20ed76920c17c6b9432b8cc19e9681d4d398077752da07d992a |
# Copyright (C) 2017 Matteo Franchin
#
# This file is part of Pyrtist.
# Pyrtist is free software: you can redistribute it and/or modify it
# under the terms of the GNU Lesser General Public License as published
# by the Free Software Foundation, either version 2.1 of the License, or
# (at your option) any late... | mfnch/pyrtist | pyrtist/lib2d/cairo_cmd_exec.py | Python | lgpl-2.1 | 14,883 | [
"Gaussian"
] | a5ebf2790ac787b31df4ee926c4354082764e8e86c0d596e2f941ed973cc04e4 |
"""
Copyright (c) 2015 Red Hat, Inc
All rights reserved.
This software may be modified and distributed under the terms
of the BSD license. See the LICENSE file for details.
"""
import json
import os
import pytest
from osbs.constants import DEFAULT_NAMESPACE
from osbs.cli.capture import setup_json_capture
from tests.... | jpopelka/osbs-client | tests/cli/test_capture.py | Python | bsd-3-clause | 1,581 | [
"VisIt"
] | 3a869687409c76d2991950535ab288daed185e1f902feac135eb6e89e18133df |
import ast as pyast
import re
import lxml.etree as ET
from calmjs.parse import asttypes as ast
from lxml.builder import E
invalid_unicode_re = re.compile(u"""[\u0001-\u0008\u000b\u000e-\u001f\u007f]""", re.U)
surrogate_unicode_re = re.compile(u"[\\ud800-\\udbff][\\udc00-\\udfff]", re.U)
def unescape_string(input_s... | redapple/js2xml | js2xml/xmlvisitor.py | Python | mit | 14,395 | [
"VisIt"
] | dd151b6d32ba33325c349b363f26bb3a8030389f233955903ffea8debc041689 |
from __future__ import print_function
from builtins import str
import os
import unittest
import shutil
import yaml
from sherlock.utKit import utKit
from fundamentals import tools
from os.path import expanduser
home = expanduser("~")
packageDirectory = utKit("").get_project_root()
settingsFile = packageDirectory + "/te... | thespacedoctor/sherlock | sherlock/tests/test_transient_catalogue_crossmatch.py | Python | mit | 11,473 | [
"Galaxy"
] | a4c07f37175b46015454a6a74cf0a242905207fe6856133a83c6b43c32dbab2f |
"""
This sample demonstrates a simple skill built with the Amazon Alexa Skills Kit.
The Intent Schema, Custom Slots, and Sample Utterances for this skill, as well
as testing instructions are located at http://amzn.to/1LzFrj6
For additional samples, visit the Alexa Skills Kit Getting Started guide at
http://amzn.to/1LG... | ItsNotABugItsAFeature/transcribe | alexa/startStop.py | Python | mit | 8,405 | [
"VisIt"
] | 7d1f3778e11562da6d43dbe78a8e412e71b8bcce25fdf6cdf6031b37ef386b54 |
"""Test class for Remote Execution Management UI
:Requirement: Remoteexecution
:CaseAutomation: Automated
:CaseLevel: Acceptance
:CaseComponent: RemoteExecution
:Assignee: pondrejk
:TestType: Functional
:CaseImportance: High
:Upstream: No
"""
from datetime import datetime
from datetime import timedelta
from tim... | rplevka/robottelo | tests/foreman/cli/test_remoteexecution.py | Python | gpl-3.0 | 32,749 | [
"Galaxy"
] | c441ee6de0dd5cbc0a8a6ccd4243383b51d15aae59df22131fcdeab798f77eff |
"""Find and deal with signatures in biological sequence data.
In addition to representing sequences according to motifs (see Motif.py
for more information), we can also use Signatures, which are conserved
regions that are not necessarily consecutive. This may be useful in
the case of very diverged sequences, where sig... | BlogomaticProject/Blogomatic | opt/blog-o-matic/usr/lib/python/Bio/NeuralNetwork/Gene/Signature.py | Python | gpl-2.0 | 8,956 | [
"Biopython"
] | 4217be3f0035eaf633df308332d926050ac6c357a302a24b1afdc7ee55f0c9f8 |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2021 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This file is part of Psi4.
#
# Psi4 is free software; you can redistribute it and/or modify
#... | psi-rking/psi4 | psi4/driver/procrouting/empirical_dispersion.py | Python | lgpl-3.0 | 14,773 | [
"Psi4"
] | 0dba6b336bfa873bf8d899e581f8237bbf89b48969cabdfbb2f9a63c14f2bf4b |
"""
Test atomic coordinates and neighbor lists.
"""
import os
import logging
import numpy as np
import unittest
from deepchem.utils import conformers
from deepchem.feat.atomic_coordinates import get_coords
from deepchem.feat.atomic_coordinates import AtomicCoordinates
from deepchem.feat.atomic_coordinates import Neighb... | ktaneishi/deepchem | deepchem/feat/tests/test_atomic_coordinates.py | Python | mit | 7,419 | [
"RDKit"
] | ade1f98f8dfcb8d2e083b82cae8cae41624ae182bf40269618d63465f829450c |
import k3d
from k3d.headless import k3d_remote, get_headless_driver
import pathlib
import vtk
path = pathlib.Path(__file__).parent.resolve()
def generate():
plot = k3d.plot(screenshot_scale=1.0)
headless = k3d_remote(plot, get_headless_driver(), width=320, height=226)
model_matrix = (
1.0, 0.0, ... | K3D-tools/K3D-jupyter | docs/source/showcase/VTK_polydata.py | Python | mit | 841 | [
"VTK"
] | 3b2c2c07c77fac0acc3885535988fdcc574923bae3d81f21bffb422d68b2507e |
# class generated by DeVIDE::createDeVIDEModuleFromVTKObject
from module_kits.vtk_kit.mixins import SimpleVTKClassModuleBase
import vtk
class vtkThreshold(SimpleVTKClassModuleBase):
def __init__(self, module_manager):
SimpleVTKClassModuleBase.__init__(
self, module_manager,
vtk.vtkT... | nagyistoce/devide | modules/vtk_basic/vtkThreshold.py | Python | bsd-3-clause | 486 | [
"VTK"
] | 1cab1abab4027d2e9c7a469a0314b3a9cc6ded6b8d070b809c91b12953be9dec |
import datetime
import os
import sys
from unittest import mock
from datetime import timedelta
import pytest
from freezegun import freeze_time
from click.testing import CliRunner
from khal.cli import main_khal, main_ikhal
from .utils import _get_text, _get_ics_filepath
class CustomCliRunner(CliRunner):
def __in... | hobarrera/khal | tests/cli_test.py | Python | mit | 28,017 | [
"VisIt"
] | 98a8fa851acd829589cca909d0ff831c352c2d94855b5baa6798e248dc1b54be |
from argparse import ArgumentParser
from bioblend import galaxy
def extract_users(user_list, all_users):
selected_users = []
for old_user in user_list:
for user in all_users:
if user[u'email'] == old_user:
selected_users.append(user)
continue
return sel... | ARTbio/tools-artbio | scripts/helper_scripts/purge_old_user_histories.py | Python | mit | 2,372 | [
"Galaxy"
] | 2ccefd818620d17be5ba5c038f4edf780202df1875f0bb204ec839c3f2442fc0 |
#!/usr/bin/python
"""
Copyright 2015 Paul Willworth <ioscode@gmail.com>
This file is part of Galaxy Harvester.
Galaxy Harvester is free software: you can redistribute it and/or modify
it under the terms of the GNU Affero General Public License as published by
the Free Software Foundation, either version 3 of th... | druss316/G-Harvestor | html/postFilter.py | Python | gpl-3.0 | 6,748 | [
"Galaxy"
] | 9f3ee34a5346b309c3d75542baf6d2ac0db877d79f3d3e3f185db2040799090a |
"""Utilities for writing code that runs on Python 2 and 3"""
# Copyright (c) 2010-2014 Benjamin Peterson
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including with... | bp-kelley/rdkit | rdkit/six.py | Python | bsd-3-clause | 23,799 | [
"RDKit"
] | 52258e9a01aa8214c31991fdc0641af7b2d524341476afc4dedf87e6427bce56 |
import numpy as np
from tqdm import tqdm
import matplotlib
matplotlib.use('Agg')
import matplotlib.pyplot as plt
from matplotlib.ticker import MultipleLocator
from sklearn.preprocessing import PolynomialFeatures
from sklearn import linear_model
import statsmodels.nonparametric.smoothers_lowess as sm
import spectralspac... | npricejones/spectralspace | spectralspace/analysis/empca_residuals.py | Python | bsd-3-clause | 51,257 | [
"Gaussian"
] | 81be6523160517999efbc9002e9654da670dc613e2b3a7465e0654911aa9252a |
import os
import pyemu
import pandas as pd
import numpy as np
if not os.path.exists("temp"):
os.mkdir("temp")
def add_base_test():
pst = pyemu.Pst(os.path.join("pst", "pest.pst"))
num_reals = 10
pe = pyemu.ParameterEnsemble.from_gaussian_draw(pst,num_reals=num_reals)
oe = pyemu.ObservationEnsembl... | jtwhite79/pyemu | autotest/en_tests.py | Python | bsd-3-clause | 22,500 | [
"Gaussian"
] | 5e5d99b6415154d8baa259569d656f201b24080982a16917d424d82b65a14793 |
"""
Codes for Canstrat ASCII files; only used by canstrat.py.
:copyright: 2016 Agile Geoscience
:license: Apache 2.0
"""
# Codes for rtc.
rtc_txt = """X ROC-C_X ROCKTP_IGNEB ROCK TYPE 1 Igneous Basic
N ROC-C_N ROCKTP_IGNEA ROCK TYPE 2 Igneous Acidic
Z ROC-C_Z ROCKTP_META ROCK TYPE 3 Metamorphic
V ROC-C_V ROCKTP_VOLC R... | agile-geoscience/striplog | striplog/canstrat_codes.py | Python | apache-2.0 | 5,071 | [
"CRYSTAL"
] | 7f1bc1cb742d943db550032a2359de27bbd93fbeff133236d6ee77ec0a5185d5 |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2021 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This file is part of Psi4.
#
# Psi4 is free software; you can redistribute it and/or modify
#... | ashutoshvt/psi4 | psi4/driver/schema_wrapper.py | Python | lgpl-3.0 | 22,829 | [
"Gaussian",
"Psi4"
] | aeaa2f659cf39b5b1b88a875862165d41b82928c8d4cdcab9a7ee481e38f5d49 |
"""
This module gathers tree-based methods, including decision, regression and
randomized trees. Single and multi-output problems are both handled.
"""
# Authors: Gilles Louppe <g.louppe@gmail.com>
# Peter Prettenhofer <peter.prettenhofer@gmail.com>
# Brian Holt <bdholt1@gmail.com>
# Noel Da... | sonnyhu/scikit-learn | sklearn/tree/tree.py | Python | bsd-3-clause | 41,818 | [
"Brian"
] | ca327c95ec1bb92f67e779ad2d437772ffa378c55510e0850e174c77f34290ec |
# Principal Component Analysis Code :
from numpy import mean,cov,double,cumsum,dot,linalg,array,rank,size,flipud
from pylab import *
import numpy as np
import matplotlib.pyplot as pp
#from enthought.mayavi import mlab
import scipy.ndimage as ni
import roslib; roslib.load_manifest('sandbox_tapo_darpa_m3')
import ro... | tapomayukh/projects_in_python | classification/Classification_with_kNN/Single_Contact_Classification/Scaled_Features/best_kNN_PCA/objects/test11_cross_validate_objects_1200ms_scaled_method_iv.py | Python | mit | 4,916 | [
"Mayavi"
] | 1ffd4a6743c897021833c8ba69d83ac76a132c9cd7e21606d3b1fa296d74a593 |
# -*- coding: utf-8 -*-
# Part of Odoo. See LICENSE file for full copyright and licensing details.
from datetime import datetime, date
from lxml import etree
import time
from openerp import api
from openerp import SUPERUSER_ID
from openerp import tools
from openerp.osv import fields, osv
from openerp.tools.translate ... | bplancher/odoo | addons/project/project.py | Python | agpl-3.0 | 53,906 | [
"VisIt"
] | 1ab893ee6f2ad42571809356a3268ef63f20569086414c46e27a3f7de9213d3d |
# -*- coding: utf-8 -*-
# Generated by Django 1.9.7 on 2016-06-05 10:20
from __future__ import unicode_literals
from django.conf import settings
from django.db import migrations, models
import django.db.models.deletion
class Migration(migrations.Migration):
dependencies = [
('visit', '0001_initial'),
... | anhelus/emw-museum-output | visit/migrations/0002_auto_20160605_1220.py | Python | gpl-3.0 | 563 | [
"VisIt"
] | a95be434ba8d3cfb201087df875595c80e5b94644d00536316f9da555da3886a |
import numpy as np
import os
import math
from skimage.io import imread
from matplotlib.colors import BoundaryNorm
from matplotlib.ticker import MaxNLocator
import scipy.stats as stats
import matplotlib.pyplot as plt
def create_isotropic_gaussian_twindataset(pos, amount_data, variance, sep_vec):
"""
Creates two... | mahieke/maschinelles_lernen | a3/util/__init__.py | Python | mit | 16,551 | [
"Gaussian"
] | d1bdd6f960284dd63d852724db99fbacab7f6b05f258e021cbb0dca207628659 |
#!/usr/bin/env python
import numpy as np
import matplotlib
# matplotlib.use("Agg")
import matplotlib.pyplot as plt
import math
import scipy.signal
"""
Usage:
som = Planar(3,20,10)
; set other parameters?
for i in range(0,1000):
som.train([red,green,blue])
self.clasify([0.1,0.4,0.5])
"""
cl... | karolciba/playground | kohonen/planar.py | Python | unlicense | 5,289 | [
"Gaussian"
] | 1d4afa59504d4f42f0c1380e235b953dd6a2dd7504b4a7aa80048f846bebba25 |
"""
.. versionadded:: 0.2
.. versionchanged:: 0.4
This function generates random steps according to given width of steps and
desired number of steps.
Example Usage
==================
Simplest example (10 steps with width 50 samples, normal distribution
with unit standard deviation and zero mean) follows.
.. code-bl... | matousc89/signalz | signalz/generators/random_steps.py | Python | mit | 3,018 | [
"Gaussian"
] | 165f9386c96ee6feb80f2f22068b9c1e74657bbee94e357abcd302b887264cce |
import copy as cp
import logging
import lib.const as C
import lib.visit as v
from .. import util
from ..meta import class_lookup
from ..meta.template import Template
from ..meta.clazz import Clazz
from ..meta.method import Method
from ..meta.field import Field
from ..meta.statement import Statement, to_statements
fro... | plum-umd/pasket | pasket/rewrite/proxy.py | Python | mit | 3,168 | [
"VisIt"
] | d2b6221c5ab1d34225b77198ae04508eae0042c138081675c7e536f14405453f |
import os.path
from .action_mapper import FileActionMapper
from .action_mapper import path_type
from .util import PathHelper
from galaxy.util import in_directory
class PathMapper(object):
""" Ties together a FileActionMapper and remote job configuration returned
by the Pulsar setup method to pre-determine th... | mikel-egana-aranguren/SADI-Galaxy-Docker | galaxy-dist/lib/pulsar/client/path_mapper.py | Python | gpl-3.0 | 4,244 | [
"Galaxy"
] | a65637ff661fd7171af6d2dcb66ae2b00469e2988c23cd79202b0783cb496202 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
# (c) 2015, Heyo
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) a... | georgefrank/ansible-modules-extras | windows/win_nssm.py | Python | gpl-3.0 | 5,495 | [
"ADF"
] | eb031416e654c68e4bc3c0509bf376d903e471426d9bf6ca04fec1b4398a1bc1 |
#!/usr/bin/env python
"""
Variational Bayes method to solve phylgoenetic HMM for histone modifications
Need to:
* Preprocess
** load each dataset
** call significant sites for each dataset (vs. one control dataset)
** save out resulting histogrammed data
* Learn
** Init parameters randomly
** E step: optimize each q... | satwik77/tree-hmm | treehmm/__init__.py | Python | bsd-3-clause | 65,101 | [
"Gaussian",
"pysam"
] | 328529e71083a24cf26acda00a491d23601ca00ac6346674d72f75691b4a6d99 |
# Requires:
# - netcdf4-python (HDF5, NetCDF-4)
# - NumPy
try:
from netCDF4 import Dataset
except ImportError:
print "ERROR: netcdf4-python module not found"
raise
try:
import os
import sys
import glob
except ImportError:
print "ERROR: os, sys or glob modules not available"
raise
tr... | bendudson/BOUT-1.0 | tools/pylib/boutdata/collect.py | Python | gpl-3.0 | 7,138 | [
"NetCDF"
] | f368f962c25a96f212324dac2ea2d76b3c513165bcfb42a93ea4a7827574e4b5 |
from typing import Optional, Set
import click
import copy
from datetime import datetime
import json
import logging
import os
import subprocess
import sys
import time
import urllib
import urllib.parse
import yaml
from socket import socket
import ray
import psutil
from ray._private.gcs_utils import use_gcs_for_bootstra... | ray-project/ray | python/ray/scripts/scripts.py | Python | apache-2.0 | 72,026 | [
"VisIt"
] | caf9517f64a6d590b3e0fe5b8a0c6932997576cff487e8bf074d3c3549220768 |
# -*- coding: utf-8 -*-
# Copyright: (c) 2008, Jarek Zgoda <jarek.zgoda@gmail.com>
__revision__ = '$Id: models.py 28 2009-10-22 15:03:02Z jarek.zgoda $'
import datetime
from django.db import models
from django.db.models import CASCADE
from django.urls import reverse
from django.conf import settings
from django.cont... | jackrzhang/zulip | confirmation/models.py | Python | apache-2.0 | 8,199 | [
"VisIt"
] | 6e08fbc80b9f55a453bdb22582cad265d763efab3ec38828e7429785de2dbf5b |
# coding=utf8
#
# Copyright 2013 Dreamlab Onet.pl
#
# This library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License as published by the Free Software Foundation;
# version 3.0.
# This library is distributed in the hope that it will be useful,
# bu... | tikan/rmock | src/rmock/runners/lmtp/runner.py | Python | lgpl-3.0 | 785 | [
"VisIt"
] | 2678d9a4fb55ff2f5719b77a54a7284e24094e886a08eb03d03c28fdc1bb42f7 |
# Copyright (c) 2009-2021 The Regents of the University of Michigan
# This file is part of the HOOMD-blue project, released under the BSD 3-Clause
# License.
"""Implement parameter dictionaries."""
from abc import abstractmethod
from collections.abc import Mapping, MutableMapping
from itertools import product, combin... | joaander/hoomd-blue | hoomd/data/parameterdicts.py | Python | bsd-3-clause | 19,595 | [
"HOOMD-blue"
] | 6a36870d7ac62c5b555a388e6ad30f11bf732d2628ce6fd108912bb6f4decd64 |
# Copyright (c) 2006-2013 Regents of the University of Minnesota.
# For licensing terms, see the file LICENSE.
import conf
import g
log = g.log.getLogger('ccp_stp_wrds')
# This isn't a perfect implementation, but we can use different stop words
# depending on what we're searching.
#
# Addy_Stop_Words__Annotation
# ... | lbouma/Cyclopath | pyserver/util_/streetaddress/ccp_stop_words.py | Python | apache-2.0 | 28,632 | [
"CRYSTAL",
"Dalton",
"Elk",
"MOOSE"
] | c626dde36283601fb25ca4862a27674ad3a23d3756d5b17bda22e7cd69f7ed2a |
#!/usr/bin/env python
"""Multithreaded interactive interpreter with GTK and Matplotlib support.
WARNING:
As of 2010/06/25, this is not working, at least on Linux.
I have disabled it as a runnable script. - EF
Usage:
pyint-gtk.py -> starts shell with gtk thread running separately
pyint-gtk.py -pylab [filename]... | lthurlow/Network-Grapher | proj/external/matplotlib-1.2.1/lib/mpl_examples/user_interfaces/interactive.py | Python | mit | 8,150 | [
"Brian"
] | f4cdc3e9e28deaa53e8d294b38b8335e4235bc12d6c4202e361e107303b45e4f |
#!/usr/bin/env python
########################################
#Globale Karte fuer tests
# from Rabea Amther
########################################
# http://gfesuite.noaa.gov/developer/netCDFPythonInterface.html
import math
import numpy as np
import pylab as pl
import Scientific.IO.NetCDF as IO
import matplotlib as ... | CopyChat/Plotting | Python/bias.TCC.GCMs.py | Python | gpl-3.0 | 12,009 | [
"NetCDF"
] | 27b0b26d52fef5f64565682fa80cb20cb723eb7796a08c77cac6cbf9106922e8 |
# Author: Travis Oliphant
# 1999 -- 2002
import operator
import math
import sys
import timeit
from scipy.spatial import cKDTree
from . import sigtools, dlti
from ._upfirdn import upfirdn, _output_len, _upfirdn_modes
from scipy import linalg, fft as sp_fft
from scipy.fft._helper import _init_nd_shape_and_axes
import nu... | aeklant/scipy | scipy/signal/signaltools.py | Python | bsd-3-clause | 145,636 | [
"Gaussian"
] | fb47c14af07ff98dfc6f6dac33520725bc9e2617c1130c137bf73fe7fa63400d |
""" Assorted utility functions and classes """
from os import path, listdir
def is_type(typecheck, data):
"""
Generic type checker
typically used to check that a string can be cast to int or float
"""
try:
typecheck(data)
except ValueError:
return False
else:
return... | ben-albrecht/qcl | qcl/utils.py | Python | mit | 1,829 | [
"VisIt"
] | d84eccc8df51cd5be1b3105da48bedb8bec1729e5ebbf4040ac485e8d6eabdc9 |
""" Helpful functions for testing """
from app.models.gym_item import GymItem
from app.models.gym import Gym
from app.models.profile import Profile
from django.contrib.auth.models import User
def create_gym_item(username=None, name=None, location=None, visit=None):
"""
Create a Gym Item instance
:param us... | Gimpneek/exclusive-raid-gym-tracker | app/tests/common.py | Python | gpl-3.0 | 941 | [
"VisIt"
] | a1cd3f8570cc5ee53632d1f824a94daab12c73105ee9fe3a7afd131438c425f6 |
# coding: utf-8
#
# Copyright 2012 NAMD-EMAP-FGV
#
# This file is part of PyPLN. You can get more information at: http://pypln.org/.
#
# PyPLN is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 o... | fccoelho/pypln.backend | pypln/backend/workers/extractor.py | Python | gpl-3.0 | 8,419 | [
"NAMD"
] | f060d359db722e5322c42a92adb01be4abe88574f56313e7b72ea44b53e86663 |
"""Contains the parent class for Scriptlets."""
# Scriptlet.py
# Mission Pinball Framework
# Written by Brian Madden & Gabe Knuth
# Released under the MIT License. (See license info at the end of this file.)
# Documentation and more info at http://missionpinball.com/mpf
import logging
class Scriptlet(object):
... | spierepf/mpf | mpf/system/scriptlet.py | Python | mit | 827 | [
"Brian"
] | 9f0ad5ac1c854e7c8bc92c81021e3498ebaa7308ecdbc48fbd22eba1a97edd95 |
# -*- coding: utf-8 -*-
# vim: tabstop=4 shiftwidth=4 softtabstop=4
#
# LICENSE
#
# Copyright (c) 2010-2017, GEM Foundation, G. Weatherill, M. Pagani,
# D. Monelli.
#
# The Hazard Modeller's Toolkit is free software: you can redistribute
# it and/or modify it under the terms of the GNU Affero General Public
# License ... | gem/oq-hazardlib | openquake/hmtk/tests/faults/mfd/test_characteristic.py | Python | agpl-3.0 | 6,251 | [
"Gaussian"
] | 78b06821cb56a5d69adf4cfcd709edcbe20c37143d1cde3d3a2f0f846d62b3d8 |
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