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# -*- coding: utf-8 -*-
from django.contrib.contenttypes.fields import GenericForeignKey
from django.contrib.contenttypes.models import ContentType
from django.db import models
from django.utils.translation import ugettext_lazy as _
class VisitManager(models.Manager):
"""
Simplify some common function to get ... | piotrek-golda/CivilHubIndependantCopy | hitcounter/models.py | Python | gpl-3.0 | 1,696 | [
"VisIt"
] | 353594365eb2c85bde21e1e2185d1a490ea5432e3c38be7d7b3c7e7cf9a98c49 |
# -*- coding: utf-8 -*-
from __future__ import unicode_literals
from django.db import models, migrations
class Migration(migrations.Migration):
dependencies = [
('contacts', '0004_auto_20160206_1558'),
]
operations = [
migrations.AddField(
model_name='scheduledphonecall',
... | I-TECH-UW/mwachx | contacts/migrations_old/0005_auto_add_visit_status.py | Python | apache-2.0 | 1,114 | [
"VisIt"
] | cc9fd4da1418770bbf118c972020f388431d8b5154ed148b8bb2c49441f35d42 |
# Copyright 2011 by Andreas Wilm. All rights reserved.
# Based on ClustalW wrapper copyright 2009 by Cymon J. Cox.
#
# Wrapper for Clustal Omega by Andreas Wilm (2011). Used _Clustalw.py
# as template.
#
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that s... | bryback/quickseq | genescript/Bio/Align/Applications/_ClustalOmega.py | Python | mit | 7,249 | [
"Biopython"
] | fc49521f231a32971f81b1ea60613cc716905911a4de57dc3f15135c89825a4d |
#!/usr/bin/python
#Python script to analyze dihedrals. Usage: "python dihedral_analyze.py (list of files to plot). D. Mobley, 5/16/07"
from numpy import zeros, arange, outer, inner, float32, int16, sqrt, floor, mean, std, log, add, average, nonzero, cov, transpose, resize, array, reshape, max, array2string, sum, histog... | chris-lee-mc/MutInf | dihedral_mutent_permut_inside_calc_mutinf.py | Python | gpl-3.0 | 53,418 | [
"Gromacs"
] | c8e47463492d159b695ab347493bba1130a751b192c80433d1c5a443ea7b1da6 |
try:
from opencog.atomspace import AtomSpace, types, Atom, TruthValue
import opencog.cogserver
except ImportError:
from atomspace_remote import AtomSpace, types, Atom, TruthValue
from tree import *
from util import *
from pprint import pprint
from collections import defaultdict
# to debug within the cogse... | misgeatgit/opencog | opencog/python/learning/fishgram/adaptors.py | Python | agpl-3.0 | 21,592 | [
"BLAST"
] | 072e94c0f7ef665ab12ca6259cc418da625da721b11f4c19533dcd6d17d3b8a8 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
This module implements Compatibility corrections for mixing runs of different
functionals.
"""
import abc
import os
import warnings
from collections import defaultdict
from typing import Optional, Sequence,... | gmatteo/pymatgen | pymatgen/entries/compatibility.py | Python | mit | 60,598 | [
"VASP",
"pymatgen"
] | cfedec18c8cd0de1b90b336db302dca9a6a43167bb32d40616bc78f7e3a3f6ae |
from time import time
import numpy as np
import matplotlib.pyplot as plt
from matplotlib import rcParams
import math
from scipy.spatial.distance import pdist, squareform
from sklearn.decomposition import PCA
import os
from tsptw_with_ortools import Solver
from config import get_config, print_config
# C... | MichelDeudon/neural-combinatorial-optimization-rl-tensorflow | Ptr_Net_TSPTW/dataset.py | Python | mit | 14,639 | [
"Gaussian"
] | 20a7f7ddc9a2205a36cae8084714fa3a76fe0f04b389a35cc8b48f49c21d1910 |
"""#Takes a Python AST and converts it into a Python AST with logging.
Takes a StencilModel and transforms it back into a Python AST but with rigged iterators
Maybe take a PythonAST only only transform the parts necessary?
This is kind of hard...
"""
import asp.codegen.python_ast as ast
# Converts from stencil coords... | richardxia/asp-multilevel-debug | specializers/stencil/stencil_logging_transform.py | Python | bsd-3-clause | 3,111 | [
"VisIt"
] | 8cb83ee52bac57f63f8d399789b8c124503844dff852b57b013c2984f96c2277 |
# This file is part of Androguard.
#
# Copyright (c) 2012 Geoffroy Gueguen <geoffroy.gueguen@gmail.com>
# All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://... | kanpol/abugfinder | tools/modified/androguard/decompiler/dad/writer.py | Python | gpl-3.0 | 25,634 | [
"VisIt"
] | 6f4a2bca8c54b5c5b2cbacf6ada3e0f53bdea498ac99e2341b1e871fddd24733 |
# -*- coding: utf-8 -*-
#
# Neo4j.rb documentation build configuration file, created by
# sphinx-quickstart on Mon Mar 9 22:41:19 2015.
#
# This file is execfile()d with the current directory set to its
# containing dir.
#
# Note that not all possible configuration values are present in this
# autogenerated file.
#
# ... | thermistor/neo4j | docs/conf.py | Python | mit | 10,659 | [
"Brian"
] | 52e851e78348abe484f95adf8bf543e58e5ba921e20c4fc3c90258c42cf24cdf |
# /usr/bin/env python
# -*- coding: utf-8 -*-
"""
LISA - organ segmentation tool.
Liver Surgery Analyser
python organ_segmentation.py
python organ_segmentation.py -mroi -vs 0.6
Author: Miroslav Jirik
Email: miroslav.jirik@gmail.com
"""
# from loguru import logger
# # logger = logging.getLogger()
# from loguru i... | mjirik/lisa | lisa/organ_segmentation.py | Python | bsd-3-clause | 91,578 | [
"Gaussian",
"VTK"
] | 14e72d8b9572089ebc1812da6e5ffad908a8ff6cef016f221db56960f421cd64 |
from InputParameters import InputParameters
from Job import Job
import os, sys, subprocess, shutil
class PBSJob(Job):
def getValidParams():
params = Job.getValidParams()
params.addRequiredParam('chunks', "The number of PBS chunks.")
# Only one of either of the next two paramteres can be specified
p... | amburan/moose | framework/scripts/ClusterLauncher/PBSJob.py | Python | lgpl-2.1 | 5,409 | [
"MOOSE"
] | ef07d232f562c364f8cf4a7aa39111a640a7bc8e2078caf80a1a5c9b5374bad7 |
#!/usr/bin/env python
"""
Script to prepare input files for Amber thermodynamic integration calculations
"""
import argparse
import numpy as np
import os
import shutil
# omg imports
import omg.amber
###user input###
def get_args():
"Argument parser for amb_ti_create_inputs.py"
parser = argparse.ArgumentParse... | eduardoftoliveira/qt_scripts | scripts/amb_ti_create_inputs.py | Python | gpl-3.0 | 3,348 | [
"Amber"
] | de2b1b42f0b684b84672fdf06453eac9609c4f96bc7b5550cc247ca071253b56 |
""" This is a test of the chain
PilotsLoggingClient -> PilotsLoggingHandler -> PilotsLoggingDB
It supposes that the DB is present, and that the service is running
"""
import unittest
import sys
from DIRAC.WorkloadManagementSystem.Client.PilotsLoggingClient import PilotsLoggingClient
from DIRAC.Core.Base.Scr... | petricm/DIRAC | tests/Integration/WorkloadManagementSystem/Test_PilotsLoggingClient.py | Python | gpl-3.0 | 5,293 | [
"DIRAC"
] | 89b9ad000447957e0181d800fd8bad9e7532a4c70f004be1d6d0b5d93a2c4675 |
# NOTE: This example uses the next generation Twilio helper library - for more
# information on how to download and install this version, visit
# https://www.twilio.com/docs/libraries/python
from twilio.rest import Client
# Your Account Sid and Auth Token from twilio.com/user/account
account = "ACXXXXXXXXXXXXXXXXXXXXX... | teoreteetik/api-snippets | notifications/rest/bindings/create-binding/create-binding.6.x.py | Python | mit | 702 | [
"VisIt"
] | 2930ee334bfde583118ff6d79a8686978c6924a392b0e71ecc5350c17d8d9936 |
# gp_bases.py
"""Utilities module containing various useful
functions for use in other modules.
"""
import numpy as np
from enterprise.signals.parameter import function
######################################
# Fourier-basis signal functions #####
######################################
__all__ = [
"createfourierd... | nanograv/enterprise | enterprise/signals/gp_bases.py | Python | mit | 8,014 | [
"Gaussian"
] | e35656dec27154601117d3637d41f4900a21e40d70f3b8f4102a8e919a49abd1 |
import time, sys, os
import numpy as np
np.errstate(invalid='ignore')
from prospect.models import model_setup
from prospect.io import write_results
from prospect import fitting
from prospect.likelihood import lnlike_spec, lnlike_phot, write_log
from dynesty.dynamicsampler import stopping_function, weight_function, _kl... | bd-j/prospector | scripts/prospector_dynesty.py | Python | mit | 6,908 | [
"Gaussian"
] | 7cc418225fbaa965b01dba26560f4474fb8d62627acced41fcabccee671528dc |
import unittest
import tensorflow as tf
from pymatgen.core import Lattice, Structure
from megnet.utils.data import get_graphs_within_cutoff
class TestGeneralUtils(unittest.TestCase):
def test_model_load(self):
s = Structure(Lattice.cubic(3.6), ["Mo", "Mo"], [[0.5, 0.5, 0.5], [0, 0, 0]])
center_i... | materialsvirtuallab/megnet | megnet/utils/tests/test_data.py | Python | bsd-3-clause | 621 | [
"pymatgen"
] | 792cccc6a69d4b17ce36472f6019fdef41ef7fcbbcecb0fa72fd10b5e9b679b9 |
# //=======================================================================
# // Copyright JobPort, IIIT Delhi 2015.
# // Distributed under the MIT License.
# // (See accompanying file LICENSE or copy at
# // http://opensource.org/licenses/MIT)
# //======================================================================... | IIIT-Delhi/jobport | placement/jobport/models.py | Python | mit | 8,336 | [
"VisIt"
] | fbae5cb986620a013cfc6d3a8f8d6cdf6b808629dc480096ae3343bea9927613 |
"""Provides class for evaluating hand pose accuracy.
HandposeEvaluation provides interface for evaluating the hand pose accuracy.
ICVLHandposeEvaluation, NYUHandposeEvaluation are specific instances for different datasets.
Copyright 2015 Markus Oberweger, ICG,
Graz University of Technology <oberweger@icg.tugraz.at>
... | moberweger/deep-prior-pp | src/util/handpose_evaluation.py | Python | gpl-3.0 | 48,347 | [
"VTK"
] | 49d43f9b9a4bbf5e494409077013a29160fa322952db71382e051bff3d486f47 |
"""
Integrates download callbacks with an external mainloop.
While things are being downloaded, Zero Install returns control to your program.
Your mainloop is responsible for monitoring the state of the downloads and notifying
Zero Install when they are complete.
To do this, you supply a L{Handler} to the L{policy}.
"... | afb/0install | zeroinstall/injector/handler.py | Python | lgpl-2.1 | 9,160 | [
"VisIt"
] | e5366e2a89e9d0f1194fa097bf6d48fe04ff96d77384977a95f955bf42478ad1 |
"""Setup script for Bokeh."""
#-----------------------------------------------------------------------------
# Copyright (c) 2012 - 2014, Continuum Analytics, Inc. All rights reserved.
#
# Powered by the Bokeh Development Team.
#
# The full license is in the file LICENCE.txt, distributed with this software.
#---------... | satishgoda/bokeh | setup.py | Python | bsd-3-clause | 19,300 | [
"GULP"
] | 385ce7f63ee4ed351c460a8ce705f858eb15ee77343de56f54340f8bb40fddce |
#!/usr/bin/python
#
# @author: Gaurav Rastogi (grastogi@avinetworks.com)
# Eric Anderson (eanderson@avinetworks.com)
# module_check: supported
# Avi Version: 17.1.2
#
# Copyright: (c) 2017 Gaurav Rastogi, <grastogi@avinetworks.com>
# GNU General Public License v3.0+ (see COPYING or https://www.gnu.org/licenses... | skg-net/ansible | lib/ansible/modules/network/avi/avi_gslbgeodbprofile.py | Python | gpl-3.0 | 4,215 | [
"VisIt"
] | 1004a52fa125210425088f116b82c2fd7582a654b2d5fdae70a10f4f5a3e9526 |
# Data_Error_Gen
# Adds Gaussian errors to (z, vz) data
# Method: take (z, vz) points for each star as centres of Gaussians with spread
# sigma_z, sigma_vz. Then resample the star's (z, vz) data from that Gaussian
import numpy as np
import numpy.random as rand
import pdb
in_filename = '/home/hsilverw/LoDaM/darcoda/... | PascalSteger/gravimage | programs/reducedata/gr_data_error_gen.py | Python | gpl-2.0 | 1,073 | [
"Gaussian"
] | 90c7ec4278d98eb75b7612cd58c61c28928c481c13bd700c583e677611099761 |
from __future__ import print_function
"""
INSTRUCTIONS
This file is used to generate the test credentials
The following environment variables are required:
export FBUTILS_APP_ID=xxxxxxxxx
export FBUTILS_APP_SECRET=xxxxxxxxxx
export FBUTILS_APP_SECRETPROOF=1
export FBUTILS_APP_SCOPE=email
export ... | jvanasco/facebook_utils | tests/generate_credentials.py | Python | bsd-3-clause | 2,758 | [
"VisIt"
] | 806a865dc0b2f4d612a2c5821b24d945d5231137cf29bbe3b81843250a10ee51 |
"""
Analyses of XMLs from a Galaxy (from directory created with get_xmls_from_galaxy.py)
Need to be improved:
* how many tools have a version in the tool tag ?
"""
########### Import ###########
import json
import os
import sys
import re
import argparse
from lxml import etree
import pandas as pd
import numpy as n... | khillion/galaxyxml-analysis | galaxyxml_analysis/analyse_xmls.py | Python | mit | 8,359 | [
"Galaxy"
] | eb1e0bd4a27cc8598df7ab97c14555212abc9ff12d1bf5f3992a77b5bea4b907 |
#
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not us... | saltstar/spark | python/pyspark/ml/regression.py | Python | apache-2.0 | 64,074 | [
"Gaussian"
] | df3139bb06ce49cc6cf295b2b40155d6f623c7fd8cc3f9c9c2c9b4c318406fb1 |
#!/usr/bin/env python3
#
# netcdfextractor.py
#
# used to read data from netcdf files in a folder
import os, fnmatch, pickle, math, time, datetime, numpy
from scipy.io import netcdf
from dateutil import tz
from multiprocessing import Pool, cpu_count
from pyhspf.forecasting.nrcm import NRCMGrid
class N... | kbrannan/PyHSPF | src/pyhspf/forecasting/netcdfextractor.py | Python | bsd-3-clause | 14,508 | [
"NetCDF"
] | e40a5368d8f13c187f794863b2b14c216d11d3d2e9fcc69cf9a6b8ed43ac44d8 |
# Copyright (c) 2003-2014 LOGILAB S.A. (Paris, FRANCE).
# http://www.logilab.fr/ -- mailto:contact@logilab.fr
#
# This program is free software; you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free Software
# Foundation; either version 2 of the License, o... | si618/pi-time | node_modules/grunt-pylint/tasks/lib/pylint/checkers/variables.py | Python | gpl-3.0 | 51,705 | [
"VisIt"
] | ac2621723ee18fd682e2e79b1d6abe7513444d5c34f06764047975639f60a15c |
# Dutch / Nederlands - Translations
from seleniumbase import BaseCase
from seleniumbase import MasterQA
class Testgeval(BaseCase):
def __init__(self, *args, **kwargs):
super(Testgeval, self).__init__(*args, **kwargs)
self._language = "Dutch"
def openen(self, *args, **kwargs):
# open(... | mdmintz/SeleniumBase | seleniumbase/translate/dutch.py | Python | mit | 21,024 | [
"VisIt"
] | c45eb13643e01cb505c06d8c1446d34c02281e1917c462631f368c4fc50b4b40 |
from __future__ import division, absolute_import, print_function
import os
import sys
import types
import re
import warnings
from numpy.core.numerictypes import issubclass_, issubsctype, issubdtype
from numpy.core import ndarray, ufunc, asarray
import numpy as np
# getargspec and formatargspec were removed in Python... | tynn/numpy | numpy/lib/utils.py | Python | bsd-3-clause | 36,337 | [
"VisIt"
] | 3f651b78649426421dd2a32bd36bb411dbd4afeea0344b42eac6b0e22607e03b |
#!/usr/bin/env python2
# vim:fileencoding=utf-8
from __future__ import (unicode_literals, division, absolute_import,
print_function)
__license__ = 'GPL v3'
__copyright__ = '2015, Kovid Goyal <kovid at kovidgoyal.net>'
import httplib, hashlib, zlib, string
from io import BytesIO
from tempfile i... | silentfuzzle/calibre | src/calibre/srv/tests/http.py | Python | gpl-3.0 | 14,483 | [
"MOOSE"
] | 66be1028568b6742da3eb13ca1bafde18fabce76024919f571cfbfdea350e9fb |
"""This module defines an ASE interface to SIESTA.
http://www.uam.es/departamentos/ciencias/fismateriac/siesta
"""
import os
from os.path import join, isfile, islink, getmtime
from cmath import exp
import array
import numpy as np
from ase.data import chemical_symbols
from ase.units import Rydberg, fs
from ase.io.si... | JConwayAWT/PGSS14CC | lib/python/multimetallics/ase/calculators/siesta.py | Python | gpl-2.0 | 31,027 | [
"ASE",
"SIESTA",
"VASP"
] | 3ff6fee0e9a1b4af164d0391c2aa500ea7a2d7859ac24824247fedeba63b2bee |
""" An utility to load modules and objects in DIRAC and extensions, being sure that the extensions are considered
"""
__RCSID__ = "$Id$"
import re
import imp
import pkgutil
import collections
from DIRAC import gLogger, S_OK, S_ERROR
from DIRAC.Core.Utilities import DErrno
from DIRAC.Core.Utilities import List, DIRAC... | chaen/DIRAC | Core/Utilities/ObjectLoader.py | Python | gpl-3.0 | 7,675 | [
"DIRAC"
] | 3e652e50dacb3d231358b2597ba713f9e5fb94835cc796f61459cb4f8c3d38b8 |
'''
Find files of interest and rangle them into a list of input_dicts
Julia Signell
2015-05-07
'''
from __init__ import *
from process_files import *
def already_processed(path, f):
'''Return True if a file has already been processed to netcdf.'''
try:
processed_file = posixpath.join(path, 'processe... | jsignell/MpalaTower | munging/find_files.py | Python | mit | 5,271 | [
"NetCDF"
] | 525b4ec7d0b9d6f8265c755a1c42cfdb5ec927d8a70b04914db807089f425ab0 |
#!/usr/bin/env python
'''
X2C can be solved in different AO basis: the (j-adapted) spinor basis and the
spin-orbital real-spherical GTO basis. Ideally, they should converge to the
same SCF solutions. However, different solutions may be found in many
open-shell systems. It often caused by symmetry (the z-component of t... | sunqm/pyscf | examples/x2c/03-x2c_ghf.py | Python | apache-2.0 | 1,334 | [
"PySCF"
] | 7054acd2da9171434ed19deb5c178cc5bfc68092c765950234ffaf424b631856 |
import unittest
import pylab as pl
import matplotlib as mpl
import itertools
import sys
import math
import timeit
import copy
import time
import struct
import scipy.stats.mstats as stats
import ConfigParser
import os.path
import getopt
from em import *
from all_pairs_BIC_score import AllPairsBicScore
MINVALUEFORMINU... | mbdriscoll/asp-old | cluster_on_cloud.py | Python | bsd-3-clause | 27,634 | [
"Gaussian"
] | 6b38781810950cc5ea01726b8ac1345371dff32b0c16066b897fa347765ced46 |
"""
Methods related to aligning reads.
This module was created because of a circular import issue with celery.
...
File "/home/glebk/Projects/churchlab/genome-designer-v2/genome_designer/pipeline/read_alignment.py", line 9, in <module>
from main.models import clean_filesystem_location
File "/home/glebk/Proje... | woodymit/millstone | genome_designer/pipeline/read_alignment_util.py | Python | mit | 2,508 | [
"BWA"
] | 66fa6ba02bedfe01e335e3c349a92bfb70ef1ca49d5ea37dd8f8df1f6d20865f |
########################
# Network to study pattern
# Learning with heterogenous connectivity
# Ramon Martinez 19 / 03 / 2014
########################
import numpy as np
import matplotlib.pyplot as plt
import h5py
from distance_functions import *
from time import localtime
def gradient(initial, end, N):
'''
C... | h-mayorquin/Neural_Pattern_Doursat | network_5.py | Python | gpl-2.0 | 3,449 | [
"NEURON"
] | 877bdde8626c44b4dd8497be93dd34f9b6843efe0d9f8d2a0c447822b2cd1d0d |
#!/usr/bin/env python
'''
Created on Mar 13, 2012
'''
from pymatgen import Structure, Lattice
__author__ = "Anubhav Jain"
__copyright__ = "Copyright 2012, The Materials Project"
__version__ = "0.1"
__maintainer__ = "Anubhav Jain"
__email__ = "ajain@lbl.gov"
__date__ = "Mar 13, 2012"
import pymongo
import os
import ... | mp-interns/ga_optimization_ternary | db_setup/initialize_db.py | Python | mit | 4,244 | [
"pymatgen"
] | b3bb2dfc92596529ceefbcebdc94ddbdf8c21af53ef2b340580ef3a23655475a |
# -*- coding: utf-8 -*-
"""
==========================================
Brainstorm Elekta phantom dataset tutorial
==========================================
Here we compute the evoked from raw for the Brainstorm Elekta phantom
tutorial dataset. For comparison, see [1]_ and:
http://neuroimage.usc.edu/brainstorm/Tu... | mne-tools/mne-tools.github.io | 0.17/_downloads/705f11964a18d8f3bd8d70a13ef43d36/plot_brainstorm_phantom_elekta.py | Python | bsd-3-clause | 7,008 | [
"Mayavi"
] | a8f431458c3bb9356b625b736986df814437494783669aa0a50f0b1fa1d18753 |
#
# Copyright 2016 The BigDL Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in ... | intel-analytics/BigDL | python/orca/example/learn/tf/transfer_learning/transfer_learning.py | Python | apache-2.0 | 6,835 | [
"ORCA"
] | 3f163aa294de80ae512bfc68a86d0b17f81d5e9c8b1afffa0db9e7a92213b433 |
from __future__ import division
import numpy as np
from numpy.linalg import solve
from scipy import optimize
#from scipy.optimize import approx_fprime
MEAN_SHIFT = True
def cov_mat(x1, x2, a, b):
return a * np.exp(-b * (x1[:, np.newaxis] - x2)**2)
def reg_cov_mat(x, a, b, c):
return cov_mat(x, x, a, b) + c... | mlds-lab/egk | gp.py | Python | mit | 5,875 | [
"Gaussian"
] | 828b288b7e504ca382c640dfabcf2ae07610ed11509871374b12797d1a266df2 |
# leaves.py
# DNF plugin for listing installed packages not required by any other
# installed package.
#
# Copyright (C) 2015 Emil Renner Berthing
#
# This copyrighted material is made available to anyone wishing to use,
# modify, copy, or redistribute it subject to the terms and conditions of
# the GNU General Public ... | jsilhan/dnf-plugins-extras | plugins/leaves.py | Python | gpl-2.0 | 4,877 | [
"VisIt"
] | bc4f861ba15643aaf6d88f7add2a1672cc6c0e81a79bb0a0306df6aaa8e110e9 |
""" GlobalDeclarations gathers top-level declarations. """
from pythran.passmanager import ModuleAnalysis
from beniget import DefUseChains
class SilentDefUseChains(DefUseChains):
def unbound_identifier(self, name, node):
pass
class GlobalDeclarations(ModuleAnalysis):
""" Gather all kind of identi... | serge-sans-paille/pythran | pythran/analyses/global_declarations.py | Python | bsd-3-clause | 1,209 | [
"VisIt"
] | ee60a5deb14a1f070b52dc389c31cccbe7640248450f028c60472fdca4a23a1e |
# -*- coding: utf-8 -*-
from __future__ import absolute_import
import diaper
import fauxfactory
import hashlib
import iso8601
import random
import re
import command
import yaml
from collections import namedtuple
from contextlib import closing
from django.core.cache import cache
from django.core.exceptions import Obje... | RedHatQE/cfme_tests | sprout/appliances/tasks.py | Python | gpl-2.0 | 107,025 | [
"VisIt"
] | cd98c3fa11b88da928469cb723a3faa46ecb1fe31004078fb4e9d90a4a2deb92 |
#!/usr/bin/env python3
## -*- coding: utf-8 -*-
## Copyright (C) 2014 Petri Heinilä, LGPL 2.1
import sys # http://docs.python.org/py3k/library/sys.html
import argparse # http://docs.python.org/py3k/library/argparse.html
import logging # http://docs.python.org/py3k/library/logging.html
import datetime
log = loggi... | hevi9/pynames | pynames/main.py | Python | lgpl-2.1 | 2,032 | [
"VisIt"
] | 566a3db7c604e57791dd7a56b9a3d62d92da67ad67c5734f881eef9bafbf5bdc |
from selenium.webdriver.common.keys import Keys
from selenium.webdriver.support.ui import WebDriverWait
from selenium.webdriver.support import expected_conditions as EC
from selenium.common.exceptions import MoveTargetOutOfBoundsException
from selenium.common.exceptions import TimeoutException
from selenium.webdriver.c... | natasasdj/OpenWPM | automation/Commands/browser_commands.py | Python | gpl-3.0 | 13,890 | [
"VisIt"
] | 4fbec8d2b60c8c7cb7ed58fe175bbbab01412e22652632b76b4185aa79ccd0c4 |
""" Helper for the CS Resources section
"""
__RCSID__ = "$Id$"
import re
import urlparse
from distutils.version import LooseVersion # pylint: disable=no-name-in-module,import-error
from DIRAC import S_OK, S_ERROR, gConfig
from DIRAC.ConfigurationSystem.Client.Helpers.Path import cfgPath
from DIRAC.Core.Utilities.Li... | fstagni/DIRAC | ConfigurationSystem/Client/Helpers/Resources.py | Python | gpl-3.0 | 10,903 | [
"DIRAC"
] | b094f054703388553948a0e784cff6443774733ea86fba2fa9bfaf9963e746dc |
# -*- coding: utf-8 -*-
# vi:si:et:sw=4:sts=4:ts=4
##
## Copyright (C) 2005-2013 Async Open Source
##
## This program is free software; you can redistribute it and/or
## modify it under the terms of the GNU Lesser General Public License
## as published by the Free Software Foundation; either version 2
## of the Licens... | andrebellafronte/stoq | stoqlib/gui/search/searchdialog.py | Python | gpl-2.0 | 19,732 | [
"VisIt"
] | ee2ebcf110884ce66bb9a56e57d0e4b148c35be0d8db9a4cdef4f0a5a300566a |
import os
import socket
import tempfile
import subprocess
from adsws.testsuite import unittest, make_test_suite, run_test_suite
from adsws import factory
from threading import Thread
import requests
from splinter import Browser
from adsws.core import db
def run_server(server):
server.serve_forever()
DEBUG = F... | ehenneken/adsws | adsws/tests/check_deployment.py | Python | gpl-2.0 | 5,812 | [
"VisIt"
] | 219fa8e216ae3513110dcac4843cdda5e0f9da3401672cac9a09cbb06b9cbcdb |
# -*- coding: utf-8 -*-
"""
Created on Fri Sep 16 12:45:25 2016
@author: cparr
"""
# import the necessary packages
import os
from skimage import io
from skimage.util import random_noise
from scipy import ndimage
import matplotlib.pyplot as plt
import numpy as np
import cv2
def block_mean(ar, fact):
# funct... | charparr/tundra-snow | gsmd.py | Python | mit | 4,454 | [
"Gaussian"
] | a15571126ce7c196bfe200e5014527197b8f9543219045305aa3534d1d442fa0 |
import sys
from lib2to3.main import main
if __name__ == '__main__':
sys.exit(main("fixes"))
def ten2eleven(*files):
"""Convert MDAnalysis 0.10.0 scripts to 0.11.0
Usage:
ten2eleven('myscript.py')
"""
main('MDAnalysis.migration.fixes', ['-w'] + list(files))
| alejob/mdanalysis | package/MDAnalysis/migration/ten2eleven.py | Python | gpl-2.0 | 287 | [
"MDAnalysis"
] | 3ba21e736f354c4bd3049f4d19da52a934021e72bca981eba746b3c4c3cd3a49 |
###############################################################################
##
## Copyright (C) 2014-2016, New York University.
## Copyright (C) 2011-2014, NYU-Poly.
## Copyright (C) 2006-2011, University of Utah.
## All rights reserved.
## Contact: contact@vistrails.org
##
## This file is part of VisTrails.
##
## ... | VisTrails/VisTrails | vistrails/packages/vtk/vtk_wrapper/wrapper.py | Python | bsd-3-clause | 2,554 | [
"VTK"
] | 7d03814ac28287cb9f8d87e1e146ec4e133d29b168a3d8c0fd33346f8c039186 |
#!/bin/env python
"""
solvationtoolkit: Tools for setting up mixtures of small organic molecules for AMBER, GROMACS, OpenMM and others.
######################################################################
# SolvationToolkit: A toolkit for setting up molecular simulations of mixtures
# Copyright 2011-2016 UC Irvine... | nividic/SolvationToolkit | solvationtoolkit/__init__.py | Python | lgpl-2.1 | 1,394 | [
"Amber",
"Gromacs",
"OpenMM"
] | 69d1b1da794aa1dbc488c7f87cd7f523de6b77c6ae22dcd76fb691977daf4d59 |
#!/usr/bin/env python
# This example demonstrates the generation of a streamsurface.
import vtk
from vtk.util.misc import vtkGetDataRoot
VTK_DATA_ROOT = vtkGetDataRoot()
# Read the data and specify which scalars and vectors to read.
pl3d = vtk.vtkPLOT3DReader()
pl3d.SetXYZFileName(VTK_DATA_ROOT + "/Data/combxyz.bin"... | CMUSV-VisTrails/WorkflowRecommendation | examples/vtk_examples/VisualizationAlgorithms/streamSurface.py | Python | bsd-3-clause | 2,589 | [
"VTK"
] | 58a07e95031fbed0a6642acf1f9f0cda9c56ce13a3cfe03dea674baccd07fb5d |
# Docstrings for generated ufuncs
#
# The syntax is designed to look like the function add_newdoc is being
# called from numpy.lib, but in this file add_newdoc puts the
# docstrings in a dictionary. This dictionary is used in
# generate_ufuncs.py to generate the docstrings for the ufuncs in
# scipy.special at the C lev... | sargas/scipy | scipy/special/add_newdocs.py | Python | bsd-3-clause | 44,029 | [
"Gaussian"
] | 10a9ef7d2fc744a88ee90c568abf8459bf243102248b165d76f44dd0401e07c5 |
"""Support for control of Elk-M1 connected thermostats."""
from elkm1_lib.const import ThermostatFan, ThermostatMode, ThermostatSetting
from homeassistant.components.climate import ClimateEntity
from homeassistant.components.climate.const import (
ATTR_TARGET_TEMP_HIGH,
ATTR_TARGET_TEMP_LOW,
HVAC_MODE_AUTO... | lukas-hetzenecker/home-assistant | homeassistant/components/elkm1/climate.py | Python | apache-2.0 | 6,319 | [
"Elk"
] | 3f5dc4fdc7dba754b9e960fb303e3dc968776bded8b096662e9fc3f4dddc9d67 |
"""
Miscellaneous tools for the pipeline. Some may eventually be refactored into their own modules.
"""
import re
import itertools
import argparse
import pysam
import pandas as pd
import os
import hashlib
from . import procOps
from .pipeline import ProcException, Procline
from distutils.version import StrictVersion
... | ComparativeGenomicsToolkit/Comparative-Annotation-Toolkit | tools/misc.py | Python | apache-2.0 | 5,360 | [
"pysam"
] | e041bc19f5fddf9fba289a4d5e995c483de1b1878f810e7f0a292fa4f96c047a |
"""Contains the Transition base class."""
# transition.py
# Mission Pinball Framework
# Written by Brian Madden & Gabe Knuth
# Released under the MIT License. (See license info at the end of this file.)
# Documentation and more info at http://missionpinball.com/mpf
import time
from mpf.media_controller.core.slide im... | spierepf/mpf | mpf/media_controller/core/transition.py | Python | mit | 5,391 | [
"Brian"
] | 3be2c6ae18317a8981af43bf0dc716ffcb9e4da5364ad48fd3953d3f0f3ad51a |
# This file is part of Merlin/Arthur.
# Merlin/Arthur is the Copyright (C)2011 of Elliot Rosemarine.
# Individual portions may be copyright by individual contributors, and
# are included in this collective work with permission of the copyright
# owners.
# This program is free software; you can redistribute it and/or ... | ellonweb/merlin | Arthur/views/graphs.py | Python | gpl-2.0 | 10,037 | [
"Galaxy"
] | cba00594a644e00d7988293aa8790e2eee139bdf551a8b24600bc8a6bed9b0cd |
# -*- Mode: python; tab-width: 4; indent-tabs-mode:nil; coding:utf-8 -*-
# vim: tabstop=4 expandtab shiftwidth=4 softtabstop=4 fileencoding=utf-8
#
# MDAnalysis --- https://www.mdanalysis.org
# Copyright (c) 2006-2017 The MDAnalysis Development Team and contributors
# (see the file AUTHORS for the full list of names)
#... | MDAnalysis/mdanalysis | testsuite/MDAnalysisTests/transformations/test_fit.py | Python | gpl-2.0 | 9,602 | [
"MDAnalysis"
] | f1838ac09f5de7d93221753a8af9bea36add5a66f69450816a0fa948f30f1c14 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
#
# Copyright © 2017 Mark Wolf
#
# This file is part of Xanespy.
#
# Xanespy is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# ... | canismarko/xanespy | tests/test_fitting.py | Python | gpl-3.0 | 12,700 | [
"Gaussian"
] | 10b9d95ea2be2116f48aaebba64bccbacd853bc793197d293218927a66ab19c9 |
def causeNameError():
'''
Causes a NameError
'''
return moose
def causeTypeError():
'''
Causes a TypeError
'''
notAString = 45315
for letter in notAString:
print letter
def causeAttributeError():
a = 5
a.sort()
def causeSyntaxError():
'''
Causes a SyntaxErr... | AmandaMoen/AmandaMoen | students/JoshuaFrailey/break_me.py | Python | gpl-2.0 | 373 | [
"MOOSE"
] | cb3f0e2213b87e19f5853653b23385d8904e061d4725086e799f0755af0aeea7 |
# Copyright (C) 2012,2013,2016,2018
# Max Planck Institute for Polymer Research
# Copyright (C) 2008,2009,2010,2011
# Max-Planck-Institute for Polymer Research & Fraunhofer SCAI
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the term... | espressopp/espressopp | src/interaction/__init__.py | Python | gpl-3.0 | 4,042 | [
"ESPResSo"
] | 5e75eb1a3f89202c385ed6ce274820f14dfde1564217cc37cb1c0b7d1f9f7b03 |
# coding: utf-8
from __future__ import division, unicode_literals
"""
This module defines the VaspInputSet abstract base class and a concrete
implementation for the parameters used by the Materials Project and the MIT
high throughput project. The basic concept behind an input set is to specify
a scheme to generate a... | yanikou19/pymatgen | pymatgen/io/vaspio_set.py | Python | mit | 61,008 | [
"VASP",
"pymatgen"
] | 3853f4d96c82503d7ee4398616c0aebe2ea626236d0de8b727c63e8243ed4d22 |
"""Tests for main module ot """
# Author: Remi Flamary <remi.flamary@unice.fr>
#
# License: MIT License
import warnings
import numpy as np
import pytest
from scipy.stats import wasserstein_distance
import ot
from ot.datasets import make_1D_gauss as gauss
def test_emd_dimension_mismatch():
# test emd and emd2 ... | rflamary/POT | test/test_ot.py | Python | mit | 10,314 | [
"Gaussian"
] | 9bb30d2d452c18ee0b06e97a9810d7c56a4d5c7d0a5ae84ff522d3a83919d29c |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2019 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This file is part of Psi4.
#
# Psi4 is free software; you can redistribute it and/or modify
#... | CDSherrill/psi4 | psi4/driver/qcdb/libmintsmolecule.py | Python | lgpl-3.0 | 121,875 | [
"Elk",
"Psi4"
] | ddfb95a594b008b187fb06cc850c2e65aaf01f3d205d689218acdd907e5692ff |
import numpy as np
import os
try:
import netCDF4 as netCDF
except:
import netCDF3 as netCDF
import matplotlib.pyplot as plt
import time
import datetime as dt
from matplotlib.dates import date2num, num2date
import pyroms
import pyroms_toolbox
import _remapping
class nctime(object):
pass
def remap_bdry(src_var... | kshedstrom/pyroms | examples/CCS1_SODA3.3.1/Boundary/remap_bdry.py | Python | bsd-3-clause | 7,999 | [
"NetCDF"
] | b14a9ccb61c82fbaa0a4c7b8a37bd6d0708ee064ef0946af8f347d063b450ad1 |
#!/usr/bin/env python
__author__ = 'Mike McCann'
__copyright__ = '2013'
__license__ = 'GPL v3'
__contact__ = 'mccann at mbari.org'
__doc__ = '''
Master loader for all BEDS Canyon Event data.
Mike McCann
MBARI 29 March 2014
@var __date__: Date of last svn commit
@undocumented: __doc__ parser
@status: producti... | stoqs/stoqs | stoqs/loaders/BEDS/loadBEDS_CanyonEvents.py | Python | gpl-3.0 | 3,884 | [
"NetCDF"
] | f57e02f9d182ffa76ac067bcd0d7affeb33aef29703aa5c056c9a6e3997a304c |
# -*- coding: utf-8 -*-
import os, sys
import numpy as np
sys.path.append(os.path.normpath('../../'))
from pychoacoustics.pysdt import*
def virtualObserver(x, midpoint=0, slope=1, guess=0.5, lapse=0, funType="Logistic", funFit="Linear"):
if funType == "Logistic":
if funFit == "Linear":
probCor... | sam81/pychoacoustics | tests/UML_tests/virtual_observer.py | Python | gpl-3.0 | 1,884 | [
"Gaussian"
] | 924a32bc181d00929ff63cab1d1e1fb3a7e4acc18f475d084d288985571e5953 |
"""
Unit tests for enrollment methods in views.py
"""
import ddt
from mock import patch
from nose.plugins.attrib import attr
from django.contrib.auth.models import User
from django.core.urlresolvers import reverse
from courseware.tests.helpers import LoginEnrollmentTestCase
from xmodule.modulestore.tests.factories i... | tiagochiavericosta/edx-platform | lms/djangoapps/instructor/tests/test_legacy_enrollment.py | Python | agpl-3.0 | 15,101 | [
"VisIt"
] | ec827e67e0bfff63da0361594c3ea9e44a98af485fd68463c8b85dee69fbf31f |
"""
Tests:
1. Galaxies positions are all within the light-cone geometry
2. The number of Galaxies in Catalogue 0 matches the expected number (optional)
3. The galaxy ids are unique across all light-cones (optional)
"""
import logging
from tao_validate import ValidateJob
logger = logging.getLogger('detest.'+__name__)... | IntersectAustralia/asvo-tao | web/tao/deployment_tests/cone_basic.py | Python | gpl-3.0 | 3,740 | [
"Galaxy"
] | eb1eddfad88893e025d968f8cca04089ca1b920380e248907c7a77dd17e94441 |
"""
Copyright (C) 2016, LSST Dark Energy Science Collaboration (DESC)
All rights reserved.
This software may be modified and distributed under the terms
of the modified BSD license. See the LICENSE file for details.
"""
# =============================================================================
from __future__ i... | DarkEnergyScienceCollaboration/Monitor | python/desc/monitor/monitor.py | Python | bsd-3-clause | 43,129 | [
"VisIt"
] | 2c92579f6513e3d8c712fa329296e56c5e2dd7a86fbe4295f3809a2bde77a2c4 |
#! /usr/bin/python3
import sys
try:
from setuptools import setup
except ImportError:
print("Missing package setuptools. Please install to continue\n(https://pypi.python.org/pypi/setuptools)")
sys.exit('Exiting now!!')
DESCRIPTION = 'Command-line torrent search program for Windows, Linux and MacO... | datafanatic/torrench | setup.py | Python | gpl-3.0 | 1,536 | [
"VisIt"
] | 8240c1418028b2434e2deb167e7dd1e2071ec98c7147b8d442faa88f76d6d025 |
#!/usr/bin/env python
"""Test script to check for required functionality.
Execute this code at the command line by typing:
python installation_test_2.py
Run the script and follow the instructions it prints at the end.
This script requires at least Python 2.6. You can check the version
of Python that you have in... | p-chambers/Python_OOP_Workshop | installation_test_2.py | Python | mit | 35,015 | [
"Mayavi"
] | d1ca358f680da84202a2877832bdcdacfa5a54212e309e5415cbc111c3754770 |
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2003-2006, 2008 Donald N. Allingham
# Copyright (C) 2008 Brian G. Matherly
# Copyright (C) 2010 Jakim Friant
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as... | arunkgupta/gramps | gramps/plugins/export/exportftree.py | Python | gpl-2.0 | 6,625 | [
"Brian"
] | 98107bccbf9fa691600d89156d19a918167b59b81d41699cf6a405aba9737006 |
# ----------------------------------------------------------------------------
# Copyright (c) 2013--, scikit-bio development team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file COPYING.txt, distributed with this software.
# --------------------------------------------... | jensreeder/scikit-bio | skbio/sequence/tests/test_nucleotide_sequence.py | Python | bsd-3-clause | 7,828 | [
"scikit-bio"
] | 2b6f9b444cd3b86426a375c835947da1e2623a06b4df595ee2da47e92f2fd2c7 |
"""Effective medium theory potential."""
from math import sqrt, exp, log
import numpy as np
from ase.data import chemical_symbols
from ase.units import Bohr
from ase.calculators.neighborlist import NeighborList
from ase.calculators.calculator import Calculator
parameters = {
# E0 s0 V0 eta2 ... | grhawk/ASE | tools/ase/calculators/emt.py | Python | gpl-2.0 | 7,399 | [
"ASE"
] | 6ccc5d6f1186d009fff09081934fe2791874c866513dde6af8cf50d6229454da |
########################################################################
# File: DIRACSingleton.py
# Author: Krzysztof.Ciba@NOSPAMgmail.com
# Date: 2011/11/24 13:40:38
########################################################################
"""
:mod: DIRACSingleton
.. module: DIRACSingleton
:synopsis: metaclass sing... | yujikato/DIRAC | src/DIRAC/Core/Utilities/DIRACSingleton.py | Python | gpl-3.0 | 1,738 | [
"DIRAC"
] | 4df2817bce00621cb4b8223c61f72d78102dfbf98a3811d39cb1d9a16caf4903 |
# Copyright (C) 2010-2019 The ESPResSo project
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later v... | KaiSzuttor/espresso | samples/chamber_game.py | Python | gpl-3.0 | 17,909 | [
"ESPResSo"
] | b0e33bf4268ad79b76e4c171f4631a04a8c8daa1ecf9788dec14bd8829ff4a0f |
#!python
# usage: python detectors2VTK.py exp flag tt flag1
# exp: experiment flag
# flag: time flag, split in timesteps if flag = 0
# tt: number of timesteps to plot, starting from 0
# flag1: 0 all particles, 1 only center (for triplets)
import fluidity_tools
import pyvtk
import myfun
import numpy as np
import os
imp... | jungla/ICOM-fluidity-toolbox | Detectors/detectors2VTK.py | Python | gpl-2.0 | 2,378 | [
"VTK"
] | 1ca2798d642666d974e1bfdb88ef9be8f2dc2fa0d136ebe53032848eb9e868fb |
# Built-in
import os
import shutil
import requests
import warnings
# Common
import numpy as np
__all__ = [
'step01_search_online',
'step01_search_online_by_wavelengthA',
'step02_download',
'step02_download_all',
'clear_downloads',
]
# Check whether a local .tofu/ repo exists
_URL = 'https://op... | ToFuProject/tofu | tofu/openadas2tofu/_requests.py | Python | mit | 24,831 | [
"ADF"
] | a0de671db69e8351a2d2da86559ef2f30d43dafd80924e848c7fb8becbddb55b |
#
# Copyright (C) 2013-2019 The ESPResSo project
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later... | espressomd/espresso | testsuite/python/dpd.py | Python | gpl-3.0 | 13,822 | [
"ESPResSo"
] | 794caa2d1a6ab19be644e8fbcd48154046e8508bf29ea4a6bb171484449d2359 |
########################################################################
# $HeadURL$
# Author: Stuart Paterson
# eMail : Stuart.Paterson@cern.ch
########################################################################
""" The Watchdog class is used by the Job Wrapper to resolve and monitor
the system CPU and mem... | Sbalbp/DIRAC | WorkloadManagementSystem/JobWrapper/WatchdogLinux.py | Python | gpl-3.0 | 4,118 | [
"DIRAC"
] | e5b1dfb6d77998546bf7d7adc46b82c3d2dd04688ff5afc24562d06d2a21f24b |
# -*- coding: utf-8 -*-
# ***********************************************************************
# Copyright (C) 2014 - 2019 Oscar Gerardo Lazo Arjona *
# <oscar.lazoarjona@physics.ox.ac.uk> *
# ... | oscarlazoarjona/fast | fast/electric_field.py | Python | gpl-3.0 | 15,398 | [
"Gaussian"
] | bf128b2906e428763798328703b9357a7403c3199eef8d067edcc2b38f70a6d6 |
########################################################################
# $HeadURL $
# File: FileCatalogHandler.py
########################################################################
"""
:mod: FileCatalogHandler
.. module: FileCatalogHandler
:synopsis: FileCatalogHandler is a simple Replica and Metadata Cat... | fibbo/DIRAC | DataManagementSystem/Service/FileCatalogHandler.py | Python | gpl-3.0 | 24,191 | [
"DIRAC"
] | 81ef3f1cc766535bd57eb0d890bcec6f42465631e32181be164a9852bfcbb2f5 |
#! /usr/bin/env python
import re
import math
import collections
import numpy as np
import time
import operator
from scipy.io import mmread, mmwrite
from random import randint
from sklearn import cross_validation
from sklearn import linear_model
from sklearn.grid_search import GridSearchCV
from sklearn import preproces... | Goodideax/CS249 | new.py | Python | bsd-3-clause | 14,678 | [
"Gaussian"
] | 5b1552a2fba83cb110a794ec2be5d28ad2cff7c300aff1f4012354d1fb882928 |
"""
Acceptance tests for Studio.
"""
import uuid
from base_studio_test import StudioCourseTest
from common.test.acceptance.fixtures.course import CourseFixture, XBlockFixtureDesc
from common.test.acceptance.pages.common.auto_auth import AutoAuthPage
from common.test.acceptance.pages.studio.asset_index import AssetInde... | fintech-circle/edx-platform | common/test/acceptance/tests/studio/test_studio_general.py | Python | agpl-3.0 | 12,062 | [
"VisIt"
] | b94d17c73d11848bd7d592a4096135189c3667ce87f6fd79fa25456fdac816ce |
from parsimonious.grammar import Grammar
from parsimonious.nodes import NodeVisitor
from time import mktime
from datetime import datetime
import parsedatetime
from .grammar import QUERY_PEG
class Parser(object):
"""
Parses a Wire program into step definitions and connections.
"""
def __init__(self, code):
... | ginkgobioworks/curious | curious/parser.py | Python | mit | 5,882 | [
"VisIt"
] | 9dabc5813e80b6e4346404725e847599413fe74d0d0398956db6979b063fe8b6 |
#!/usr/bin/env python
# This file is part of the Minecraft Overviewer.
#
# Minecraft Overviewer is free software: you can redistribute it and/or
# modify it under the terms of the GNU General Public License as published
# by the Free Software Foundation, either version 3 of the License, or (at
# your op... | eminence/Minecraft-Overviewer | overviewer.py | Python | gpl-3.0 | 21,778 | [
"VisIt"
] | 64cfe25b64294fc1ad5ff9edca26a2d4c0a79cd040d946e88d1d1a01886ff262 |
""" Class that contains client access to the JobManager handler. """
from DIRAC.Core.Base.Client import Client
class JobManagerClient(Client):
"""JobManagerClient sets url for the JobManagerHandler.
"""
def __init__(self, url=None, **kwargs):
"""
Sets URL for JobManager handler
:param self: self r... | andresailer/DIRAC | WorkloadManagementSystem/Client/JobManagerClient.py | Python | gpl-3.0 | 600 | [
"DIRAC"
] | bb9eac1c413df8ce5249e3fc07e871210c403ca7d5d1da4c9d55cf47dd5ae413 |
# pylint: disable=missing-docstring
# pylint: disable=redefined-outer-name
from lettuce import world, step
from common import *
from terrain.steps import reload_the_page
from selenium.common.exceptions import InvalidElementStateException
from contentstore.utils import reverse_course_url
from nose.tools import assert_i... | vismartltd/edx-platform | cms/djangoapps/contentstore/features/grading.py | Python | agpl-3.0 | 6,921 | [
"VisIt"
] | 7f9ce24eeeb6c6fbca7b7e775219f37546e4cfe5df37e3dd5a6c524e1eaffe92 |
#!/usr/bin/env python
import code
import copy
import cpp
import cpp_file_parser
import util
class PureVirtualFunctionExtractor(cpp_file_parser.RecursionVisitor):
def __init__(self, data, scope):
self.data = data
self.scope = scope
def visit_function(self,function_):
function = copy.d... | lubkoll/friendly-type-erasure | type_erasure/handle_detail.py | Python | mit | 9,513 | [
"VisIt"
] | 86fa62a4f98674f6c6dd229fe6517a35c5f4ba98c2941a23d26e10fa1253be5f |
import os
import unittest
import dalton
import urllib
dalton.inject()
here = os.path.abspath(os.path.dirname(__file__))
class TestInject(unittest.TestCase):
def _makeHttp(self, host):
from httplib import HTTPConnection
return HTTPConnection(host)
def testPlainRequest(self):
"""Test to... | bbangert/Dalton | dalton/tests/__init__.py | Python | mit | 6,038 | [
"Dalton"
] | f17274f0df464461c981f1e1d346a87700d87dfc014dc59c3278a1ed87aa9b4d |
# Least common ancestor Problem
#http://www.ics.uci.edu/~eppstein/261/BenFar-LCA-00.pdf
# http://code.activestate.com/recipes/498243-finding-eulerian-path-in-undirected-graph/
# http://codereview.stackexchange.com/questions/104074/eulerian-tour-in-python
# Store Arrays: Parents: P[i] is the parent of i
# ... | tristan-hunt/UVaProblems | DataStructures/ac.py | Python | gpl-3.0 | 6,305 | [
"VisIt"
] | 71f6627af09693e6ffbfdd1e68f1fafbca12486a606c599a9955d0e17f57c332 |
# Copyright 2015 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | sarvex/tensorflow | tensorflow/python/ops/image_grad_test_base.py | Python | apache-2.0 | 25,786 | [
"Gaussian"
] | f76c6d6ef94b4ebdf637a2548060bb520ee7a39a36018f19afde73b039c80331 |
# $HeadURL: $
''' Command
Base class for all commands.
'''
from DIRAC import gLogger, S_OK
__RCSID__ = '$Id: $'
class Command( object ):
'''
The Command class is a simple base class for all the commands
for interacting with the clients
'''
def __init__( self, args = None, clients = None ):
... | vmendez/DIRAC | ResourceStatusSystem/Command/Command.py | Python | gpl-3.0 | 2,215 | [
"DIRAC"
] | f08fadd875358ea7b6a123c2bae4d595cb61cf26a7e4a0197fbe2e2751cbb143 |
import chainerx
from chainerx import _docs
def set_docs():
_docs_creation()
_docs_evaluation()
_docs_indexing()
_docs_linalg()
_docs_logic()
_docs_loss()
_docs_manipulation()
_docs_math()
_docs_sorting()
_docs_statistics()
_docs_connection()
_docs_normalization()
_d... | niboshi/chainer | chainerx/_docs/routines.py | Python | mit | 127,367 | [
"Gaussian"
] | c854439a5ec2ee130383b67436c33692922b2fc443f062f5fb8da7f0073fc499 |
'''
Brian Kirk - National Radio Astronomy Observatory - Assosciated Universities Inc.
This is a rudimentary attempt at auto-masking and cleaning.. let's see how it goes.
This is written using the CASA Toolkit tools. They are functions in CASA for Imaging Analysis (ie. ia.function)
This should be run within CASA
'''
#-... | bmarshallk/NAASC | various_scripts/AutoMask.py | Python | gpl-3.0 | 16,841 | [
"Brian"
] | 52c3cef3232869f881a56d674f51b6470c90467244916c333b58d60cf6e9de97 |
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