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#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""Spectral feature extraction"""
import numpy as np
import scipy
import scipy.signal
import scipy.fftpack
from .. import util
from .. import filters
from ..util.exceptions import ParameterError
from ..core.time_frequency import fft_frequencies
from ..core.audio import z... | carlthome/librosa | librosa/feature/spectral.py | Python | isc | 60,700 | [
"Gaussian"
] | 0febd90f6407a82d22b37b23aa1fbc2c69c3846ee4873ea397d1a93cb4a05720 |
# coding=utf-8
"""
Tests for the course home page.
"""
from datetime import datetime, timedelta
import ddt
import mock
import six
from django.conf import settings
from django.http import QueryDict
from django.urls import reverse
from django.utils.http import urlquote_plus
from django.utils.timezone import now
from p... | edx-solutions/edx-platform | openedx/features/course_experience/tests/views/test_course_home.py | Python | agpl-3.0 | 47,290 | [
"VisIt"
] | c2055e842bbe11fbf297074bb8d15c8b6ae8902d8a2e08b94e721fa0543d5976 |
# Copyright 2007 by Tiago Antao <tiagoantao@gmail.com>. All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
"""
This module allows to control fdist.
This will allow to call fdist... | bryback/quickseq | genescript/Bio/PopGen/FDist/Controller.py | Python | mit | 11,154 | [
"Biopython"
] | 401acbd4fd3fe0f7ee511991a64576f88514a9e5e6d69147b9e97efebbb375d8 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
# freeseer - vga/presentation capture software
#
# Copyright (C) 2013, 2014 Free and Open Source Software Learning Centre
# http://fosslc.org
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public Licens... | Freeseer/freeseer | src/freeseer/frontend/cli.py | Python | gpl-3.0 | 13,796 | [
"VisIt"
] | b1355083140f3ca0c6b2efeb70dc489f97e1791d26ee01907106b98ba7e1f3b2 |
# (c) 2012, Michael DeHaan <michael.dehaan@gmail.com>
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any lat... | ownport/ansiblite | src/ansiblite/template/safe_eval.py | Python | gpl-3.0 | 4,824 | [
"VisIt"
] | 8eafc85516da2328aecad47a744b2e41a4c7b42f696e3242882f013b7b0f2077 |
from httplib2 import Http
import json
import sys
print "Running Endpoint Tester....\n"
address = raw_input("Please enter the address of the server you want to access, \n If left blank the connection will be set to 'http://localhost:5000': ")
if address == '':
address = 'http://localhost:5000'
#GET AUTH CODE
clien... | AtmaMani/pyChakras | udacity_restful_apis/lesson_4/11_Pale Kale Ocean Eats/starter_code/veggie_tester.py | Python | mit | 1,201 | [
"VisIt"
] | 8b7bfa2c5dbb75a1f578dcc84190cec7b517a8261fb4e1db709823e85a00b39b |
#!/usr/bin/env python
# Copyright 2015 The Kubernetes Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by appli... | nicksardo/ingress | hack/boilerplate/boilerplate.py | Python | apache-2.0 | 6,271 | [
"VisIt"
] | 15cb5b891bbea35ede27f9027a2bfeec54ec2a8b1527db815a3bb1819eb21bc1 |
# Copyright (c) 2013, Web Notes Technologies Pvt. Ltd. and Contributors
# License: GNU General Public License v3. See license.txt
from __future__ import unicode_literals
import frappe
from frappe.utils import add_days, getdate, cint
from frappe import throw, _
from erpnext.utilities.transaction_base import Transacti... | indictranstech/focal-erpnext | support/doctype/maintenance_schedule/maintenance_schedule.py | Python | agpl-3.0 | 9,816 | [
"VisIt"
] | c5d3e7a44fd546b5627d1183470faf73ad6688d2e76f42e89c5ae0f67fec06b0 |
from __future__ import print_function
from pyiid.tests import *
import numpy as np
from pyiid.calc.spring_calc import Spring
from ase import Atom
from unittest import SkipTest
from builtins import range
import pytest
__author__ = 'christopher'
def check_meta(value):
value[0](value[1:])
def check_voxel_nrg(valu... | CJ-Wright/pyIID | pyiid/tests/test_calc/test_spring.py | Python | bsd-3-clause | 2,315 | [
"ASE"
] | f40dcf79f56658426286ca1cc9dba5cf54dc81b1bad1fd04e4a745c0381cd97c |
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
Created on Nov 10, 2012
@author: shyue
"""
import random
import unittest
from pymatgen.core.composition import ChemicalPotential, Composition
from pymatgen.core.periodic_table import Element, Species
from pymatgen.util.t... | vorwerkc/pymatgen | pymatgen/core/tests/test_composition.py | Python | mit | 25,901 | [
"pymatgen"
] | a0a48f067bbd1f7497a41cb21900a4eba0dec9f499f1d7c33c273f35a799599a |
''' Test_RSS_Policy_FreeDiskSpacePolicy
'''
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
# pylint: disable=protected-access
import unittest
import DIRAC.ResourceStatusSystem.Policy.FreeDiskSpacePolicy as moduleTested
###################################... | yujikato/DIRAC | src/DIRAC/ResourceStatusSystem/Policy/test/Test_RSS_Policy_FreeDiskSpacePolicy.py | Python | gpl-3.0 | 3,745 | [
"DIRAC"
] | 6bf2a2d12bee741e3bd714b9e3d4959835e4685a88fba169e41eebbfaf42a33b |
# Copyright (C) 2019 The ESPResSo project
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later versio... | KaiSzuttor/espresso | testsuite/scripts/tutorials/test_04-lattice_boltzmann_part3_solution.py | Python | gpl-3.0 | 1,097 | [
"ESPResSo"
] | 889516696b2c3c2103e788be1b5e8e632fdd7d87b6b4370346875641bf06919f |
""" Optimization for Python costly pattern. """
from pythran.conversion import mangle
from pythran.analyses import Check, Placeholder
from pythran.passmanager import Transformation
from copy import deepcopy
import gast as ast
class Pattern(object):
def match(self, node):
self.check = Check(node, dict()... | pombredanne/pythran | pythran/optimizations/pattern_transform.py | Python | bsd-3-clause | 13,159 | [
"VisIt"
] | a45b2b9646bbf1859482c93c18cf5739308747e7ce7127f313b1a3bce888560c |
import os
import sys
import time
import numpy as np
import theano
import theano.tensor as T
from theano.sandbox.cuda.basic_ops import gpu_contiguous
# implementing Gaussian layer
# this is for now limited to diagonal covariance matrix
class Gaussian(object):
""" Initialize from xml definition node """
def _... | mohsenmalmir/DeepLearningStack | DeepLearningStack/RL/Gaussian.py | Python | mit | 3,473 | [
"Gaussian"
] | 8a0e5c68c2adaeefc79e47f3c206bb64f8cf2b83b2df3069b6ac90bee94c2544 |
import sympy.mpmath
from sympy.mpmath import *
from sympy.mpmath.libmp import *
import random
import sys
try:
long = long
except NameError:
long = int
def test_type_compare():
assert mpf(2) == mpc(2,0)
assert mpf(0) == mpc(0)
assert mpf(2) != mpc(2, 0.00001)
assert mpf(2) == 2.0
assert mpf... | wolfram74/numerical_methods_iserles_notes | venv/lib/python2.7/site-packages/sympy/mpmath/tests/test_basic_ops.py | Python | mit | 15,143 | [
"Gaussian"
] | dc6a0ba3247c4280757bc364767b4c2a013d9fd0e890c678cb628a5e5c5bc976 |
#
# tsne.py
#
# Implementation of t-SNE in Python. The implementation was tested on Python 2.5.1, and it requires a working
# installation of NumPy. The implementation comes with an example on the MNIST dataset. In order to plot the
# results of this example, a working installation of matplotlib is required.
# The ... | mikecunha/pycon_reco | tsne3.py | Python | apache-2.0 | 5,325 | [
"Gaussian"
] | 11b1831de5396cac76f1374b512ec7f3ccd05b9388a54792a934e8634cdb9aea |
# Most of this code is:
# (c) 2005 Ian Bicking and contributors; written for Paste (http://pythonpaste.org)
# Licensed under the MIT license: http://www.opensource.org/licenses/mit-license.php
# The server command includes the additional header:
# For discussion of daemonizing:
# http://aspn.activestate.com/ASPN/C... | galaxyproject/pulsar | pulsar/util/pastescript/serve.py | Python | apache-2.0 | 36,220 | [
"Galaxy"
] | 74aa535a7f9af4c51e83fffd57420ae660fe7a9df4c0c7fe5849efeea890568f |
# ----------------------------------------------------------------------------
# Copyright (c) 2013--, scikit-bio development team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file COPYING.txt, distributed with this software.
# --------------------------------------------... | Kleptobismol/scikit-bio | skbio/parse/record_finder.py | Python | bsd-3-clause | 6,987 | [
"scikit-bio"
] | e32d2aa90f4a4268720aab9a640415ba7cd85301d1a233d163c361584bc76812 |
"""
Module for implementing helper functions.
"""
from numbers import Number
try:
from collections.abc import MutableMapping
except ImportError:
from collections import MutableMapping
from collections import defaultdict
import math
import numpy as np
import sympy as sp
from scipy.fftpack import dct
from shenfun... | spectralDNS/shenfun | shenfun/utilities/__init__.py | Python | bsd-2-clause | 16,656 | [
"Mayavi"
] | ad33645e01899c4446781656f7128acf648d3985fe2b509e25e717985d069733 |
import os, pdb, platform, time, warnings
import ctypes as ct
import numpy as np
import scipy.sparse as sp
MAX_ONES = 1024*1024*32
if platform.system() == 'Windows':
_cudamat = ct.cdll.LoadLibrary('libcudamat.dll')
else:
_cudamat = ct.cdll.LoadLibrary(os.getcwd() + '/cudamat/libcudamat.so')
_cudamat.get_last_... | y0ast/unsupervised-videos | cudamat/cudamat.py | Python | mit | 72,481 | [
"Gaussian"
] | 4e2ea68ca8f9358e7ef03522b74f3045ef96eaedae4c5b0d96ab0846479a5c1e |
import re
from itertools import product, permutations, combinations
from collections import defaultdict
from rdkit import Chem
from .functions import mol_to_smarts
__author__ = 'pavel'
patt_remove_map = re.compile("\[\*\:[0-9]+\]") # to change CC([*:1])O to CC([*])O
patt_remove_h = re.compile("(?<!\[)H[1-9]*(?=:[0-... | DrrDom/crem | crem/mol_context.py | Python | bsd-3-clause | 11,778 | [
"RDKit"
] | 9133a4c2a056f511b734dc60838d06fc01ce70be53c3aee72563353725625709 |
#
# gPrime - A web-based genealogy program
#
# Copyright (C) 2000-2007 Donald N. Allingham
# Copyright (C) 2007-2012 Brian G. Matherly
# Copyright (C) 2010 Jakim Friant
# Copyright (C) 2012-2014 Paul Franklin
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the G... | sam-m888/gprime | gprime/plugins/textreport/ancestorreport.py | Python | gpl-2.0 | 14,115 | [
"Brian"
] | c0c9435eba765030050a121e5541d6857b2f91cfbbb35504cee4d1c443fcc951 |
# -*- coding: utf-8 -*-
##
## This file is part of CDS Invenio.
## Copyright (C) 2002, 2003, 2004, 2005, 2006, 2007, 2008 CERN.
##
## CDS Invenio is free software; you can redistribute it and/or
## modify it under the terms of the GNU General Public License as
## published by the Free Software Foundation; either versio... | lbjay/cds-invenio | modules/bibedit/lib/refextract.py | Python | gpl-2.0 | 275,239 | [
"DIRAC"
] | c4b099054ccabc56b7446602025855c6d48b3654a659a8eb3c3c7292d9ffb2aa |
# -*- coding: utf-8 -*-
# <nbformat>3.0</nbformat>
# <codecell>
# Some Illumina reads from ancient DNA samples were found to contain an inverted repeat
# with a different sequence inbetween
# in other words, the first x bases of a read are the reverse complement of the last x bases
# This script is meant to clip the ... | lexnederbragt/inverted_repeats | clip_inverted_repeats.py | Python | unlicense | 7,738 | [
"Biopython"
] | cb8f777bb8ecf8ecaed4ae9e3c888b529749c79062999a74d2b45c597ecd4c4d |
#!/usr/bin/env python
import vtk
from vtk.test import Testing
from vtk.util.misc import vtkGetDataRoot
VTK_DATA_ROOT = vtkGetDataRoot()
# Create the RenderWindow, Renderer and both Actors
#
ren1 = vtk.vtkRenderer()
renWin = vtk.vtkRenderWindow()
renWin.SetMultiSamples(0)
renWin.AddRenderer(ren1)
iren = vtk.vtkRenderWi... | HopeFOAM/HopeFOAM | ThirdParty-0.1/ParaView-5.0.1/VTK/Filters/Core/Testing/Python/TestSynchronizedTemplates2D.py | Python | gpl-3.0 | 1,438 | [
"VTK"
] | b3a7336c43b0d8c24164ba387a8393f0f4588dfc1b5d02b43b6f8a7f8588932a |
"""
Tests for vasp package.
"""
| materialsproject/custodian | custodian/vasp/tests/__init__.py | Python | mit | 32 | [
"VASP"
] | 38c0761b6df7b9e488df4cead1c078422013dc1387ddb59654be70bd9943e7e7 |
#################################################################################
## _________ ____ ________ _______ __ _____ __ __ __________ __
## / ____/ | / __ \/_ __/ / / / ___// / / / | / //_// ____/ __ \/ /
## / __/ / /| | / /_/ / / / / /_/ /\__ \/ /_/ / /| | / ,< / __/ / /_/ / /
## ... | scottdanesi/earthshaker-aftershock | rightramp.py | Python | gpl-3.0 | 7,953 | [
"VisIt"
] | 9db04ebcbea27cc325445c6330039c6e949273f1621796ddd65f166b12740821 |
# coding: utf-8
"""
Vericred API
Vericred's API allows you to search for Health Plans that a specific doctor
accepts.
## Getting Started
Visit our [Developer Portal](https://developers.vericred.com) to
create an account.
Once you have created an account, you can create one Application for
Production and an... | vericred/vericred-python | test/test_formulary_response.py | Python | apache-2.0 | 10,045 | [
"VisIt"
] | 0914b8776a5a6f6ad0977244f4cffef468e3539e3c6d8927fb9e520d93a65788 |
# Copyright (c) 2015, Frappe Technologies Pvt. Ltd. and Contributors
# License: GNU General Public License v3. See license.txt
from __future__ import unicode_literals
import frappe
from frappe.utils import add_days, getdate, cint, cstr
from frappe import throw, _
from erpnext.utilities.transaction_base import Transa... | manassolanki/erpnext | erpnext/maintenance/doctype/maintenance_schedule/maintenance_schedule.py | Python | gpl-3.0 | 9,319 | [
"VisIt"
] | 73de1f12d45bca3de9e94d456edc439d388a8f47a64901650378bcae7ffeed50 |
"""
Given a binary tree, return the preorder traversal of its nodes' values.
For example:
Given binary tree {1,#,2,3},
1
\
2
/
3
return [1,2,3].
Note: Recursive solution is trivial, could you do it iteratively?
"""
# Definition for a binary tree node
class TreeNode:
def __init__(self, x):
se... | Ahmed--Mohsen/leetcode | tree_pre_order.py | Python | mit | 908 | [
"VisIt"
] | 74173f73bbf1d651c1e2248210c0dabc693b46782928d312c87108d4256fa298 |
# pylint: disable=C0111
from lettuce import world, step
from selenium.webdriver.common.keys import Keys
from xmodule.modulestore.django import modulestore
VIDEO_BUTTONS = {
'CC': '.hide-subtitles',
'volume': '.volume',
'play': '.video_control.play',
'pause': '.video_control.pause',
'handout': '.vi... | c0710204/edx-platform | cms/djangoapps/contentstore/features/video.py | Python | agpl-3.0 | 8,655 | [
"VisIt"
] | e6141eaff902032ed73b190080f6916888d543676f1ab885fa5a245881efb7cf |
# -*- coding: utf-8 -*-
# python-holidays
# ---------------
# A fast, efficient Python library for generating country, province and state
# specific sets of holidays on the fly. It aims to make determining whether a
# specific date is a holiday as fast and flexible as possible.
#
# Author: ryanss <ryanssdev@icl... | ryanss/python-holidays | holidays/countries/chile.py | Python | mit | 3,698 | [
"COLUMBUS"
] | 1104ab60e9a5db626a53cd4405853dd9ff2f85dcf975346699980cdd5fc2fe82 |
import os, random, time
from django.conf import settings
from django.core.urlresolvers import reverse
from rest_framework import serializers
from rest_framework.generics import ListCreateAPIView
from rest_framework.response import Response
from rest_framework.views import APIView
def path(filename):
return '{}{}'... | caffeinehit/coffeeport | coffeeport/app/views.py | Python | mit | 4,457 | [
"Galaxy"
] | 232f6e3ca052e372a1294a8b8e9ec66c3ef8c73c2ea8aabece377ca2caedf395 |
from . import Visitor
class MetaVisitor(Visitor):
def visit(self, entity):
self.stack = [entity]
while len(self.stack):
entity = self.stack.pop()
next = self.internal_visit(entity)
if next is not None:
self.stack.extend(next)
def internal_visit(self, entity):
method = 'visit_' + entity.__cl... | stlemme/python-dokuwiki-export | visitor/metavisitor.py | Python | mit | 453 | [
"VisIt"
] | a1ec7c7b1bdfb7c754afce106e9353736d4d34dc01529ee4d38228db062743b4 |
import logging
import pyrat
import scipy as sp
from scipy import optimize as opt
import numpy as np
class Lee(pyrat.FilterWorker):
"""
Lee's classical speckle filter from 1981. Not the best one...
:author: Andreas Reigber
:param array: The image to filter (2D np.ndarray)
:type array: float
:... | birgander2/PyRAT | pyrat/filter/Despeckle.py | Python | mpl-2.0 | 89,651 | [
"Gaussian"
] | 08919e0d92bf84479155fd03a7fed5dd5bac8cb1198ac341a96e628d3a3d2435 |
# -*- coding: utf-8 -*-
#
# Copyright © Spyder Project Contributors
# Licensed under the terms of the MIT License
# (see spyder/__init__.py for details)
"""
Utilities for the Collections editor widget and dialog
"""
from __future__ import print_function
import re
# Local imports
from spyder.config.ba... | bgris/ODL_bgris | lib/python3.5/site-packages/spyder/widgets/variableexplorer/utils.py | Python | gpl-3.0 | 19,445 | [
"NetCDF"
] | 6489f57e5dc963dc02770e843f5aab5dc5af4ba602887d5fcd16fa4968e88639 |
#!/usr/bin/env python
import codecs
import time
import numpy as np
import theano
import theano.tensor as T
import cPickle as pickle
import os.path
from collections import Counter
from collections import OrderedDict
from theano.tensor.signal import downsample
def utf8read(f):
return codecs.open(f, 'r', 'utf-8')
d... | Nero-Hu/mt | RNN/rnn.py | Python | mit | 10,541 | [
"Gaussian"
] | c1630db509a5fa3d2b91a2bba373035dbc3dbffb76faffe38d4858fb3619e6cb |
# Copyright 2008-2013 Nokia Siemens Networks Oyj
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law... | ktan2020/legacy-automation | win/Lib/site-packages/robot/running/model.py | Python | mit | 8,154 | [
"VisIt"
] | 69f5318caf6c91433f3eeb2f91962906973d3ff7343cb93af044c9377f2a2a48 |
# pylint: disable=missing-docstring
import urllib
from django.contrib.auth.models import User
from lettuce import world
from student.models import CourseEnrollment
from xmodule.contentstore.django import _CONTENTSTORE
from xmodule.modulestore.django import clear_existing_modulestores, modulestore
@world.absorb
def... | fintech-circle/edx-platform | common/djangoapps/terrain/course_helpers.py | Python | agpl-3.0 | 2,484 | [
"VisIt"
] | 7aa2c9e5e947be2ef941c2b33007dfbe2ac2348a1e1502a0a4e77d912d3bf2bd |
""" DIRAC Graphs package provides tools for creation of various plots to provide
graphical representation of the DIRAC Monitoring and Accounting data
The DIRAC Graphs package is derived from the GraphTool plotting package of the
CMS/Phedex Project by ... <to be added>
"""
__RCSID__ = "$Id$"
import DI... | Sbalbp/DIRAC | Core/Utilities/Graphs/__init__.py | Python | gpl-3.0 | 4,539 | [
"DIRAC"
] | 900df0f4d1ae8958241b887ff87e554a6be04fe787439e7d30877c4d13af1035 |
#!/usr/bin/env python3
"""Driver program for post-build processing"""
# $Id: make_installers.py 513315 2016-09-09 13:58:57Z boratyng $
#
# Author: Christiam Camacho
#
from __future__ import print_function
import os, sys, os.path
from optparse import OptionParser
import blast_utils
import shutil
VERBOSE = False
SCRIPT... | kyungtaekLIM/PSI-BLASTexB | src/ncbi-blast-2.5.0+/c++/scripts/projects/magicblast/post_build/make_installers.py | Python | lgpl-3.0 | 4,052 | [
"BLAST"
] | 85441e8a724f9e6349c0a3982167a5b89ce269c1eaa77a32198ab75fc43341e6 |
#!/usr/bin/env python
from __future__ import print_function
import logging, sys, os, time
import importlib
from pprint import pprint
from cutlass import iHMPSession
from cutlass_utils import format_query
# from cutlass_search import retrieve_nodes, query_all_oql
# Log It!
def log_it(logname=os.path.basename(__file__)... | TheJacksonLaboratory/osdf_submit | scripts/ihmp_testing.py | Python | gpl-3.0 | 12,549 | [
"VisIt"
] | 167c8eb653d4cf10a58f276b25f552d070943c6055feef7096848f5d4d99ad67 |
#!/usr/bin/env python
#
# $File: recIntensity.py $
#
# This file is part of simuPOP, a forward-time population genetics
# simulation environment. Please visit http://simupop.sourceforge.net
# for details.
#
# Copyright (C) 2004 - 2010 Bo Peng (bpeng@mdanderson.org)
#
# This program is free software: you can redistribu... | BoPeng/simuPOP | docs/recIntensity.py | Python | gpl-2.0 | 1,507 | [
"VisIt"
] | 98ddd06f442f5a818341f8dfb711349cde58c72ed446107401c44901cf9a24eb |
#!/usr/bin/env python
#
# Name: Jtvlc
# Author: Vladislav Yazhbin <vlad@justin.tv>
# Date: 8/10/2009
# Version: 0.41
#
# Description: Broadcast on Justin.tv with VLC
#
####################################################################################... | baoping/jtvlc | jtvlc.py | Python | mit | 16,649 | [
"VisIt"
] | e1c1d1e9cdc8d15b8fb2608714044901d8ac2c05fd88ad6739ab55642ff97a53 |
"""
Tool run for galaxy clustering interfacte
Date: January 2013
Author: James Boocock
"""
""" This class prepares everything related to a tool run in the galaxy clustering interface """
import os
import sys
import logging
import util
log =logging.getLogger(__name__)
class ToolRun(object):
""" Tool ... | smilefreak/NesiGridSelection | grid_selection/clustering/tool_run.py | Python | mit | 6,409 | [
"Galaxy"
] | 4d43e7b5d05d6a2a7f10f46f6ad47e00a911ca104e29055ee7c85f22346f7167 |
# -----------------------------------------------------------------------------
# Copyright (c) 2013--, scikit-bio development team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file COPYING.txt, distributed with this software.
# -------------------------------------------... | JWDebelius/scikit-bio | skbio/parse/sequences/clustal.py | Python | bsd-3-clause | 5,418 | [
"scikit-bio"
] | 9eb2a4aaa1c45c73c8c7476761fac9183fc3f689f533e660403bf819e19db8f5 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
#
# hello documentation build configuration file, created by
# sphinx-quickstart on Tue Jul 9 22:26:36 2013.
#
# This file is execfile()d with the current directory set to its
# containing dir.
#
# Note that not all possible configuration values are present in this
# autog... | bnara/hello | docs/conf.py | Python | bsd-3-clause | 8,365 | [
"Brian"
] | 51e861f708f32fe4f5c84980d817c484284a9283ca997bbc361931c79bd45b6c |
#A* -------------------------------------------------------------------
#B* This file contains source code for the PyMOL computer program
#C* Copyright (c) Schrodinger, LLC
#D* -------------------------------------------------------------------
#E* It is unlawful to modify or remove this copyright notice.
#F* ---------... | gratefulfrog/lib | python/pymol/computing.py | Python | gpl-2.0 | 10,218 | [
"ChemPy",
"PyMOL"
] | b9cdefaa911677bf545374faa3c42a9fac3c38342abd93c6679eb964403d5717 |
#!/usr/bin/pythonw
# Copyright (c) 2015, Amit Zeisel, Gioele La Manno and Sten Linnarsson
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
#
# * Redistributions of source code must retain the abov... | miguel1velazquez/FJbackSPIN | PluginBackSPIN/src/bsScripts/backSPIN.py | Python | apache-2.0 | 37,329 | [
"VisIt"
] | 58aefde9d08ff8469099d3d47122d9dd8b9ad8dfe33e6795d8b2446ed811dc68 |
"""
PackageKit integration.
"""
# Copyright (C) 2010, Aleksey Lim
# See the README file for details, or visit http://0install.net.
import os, sys
import locale
import logging
from zeroinstall import _, SafeException
from zeroinstall.support import tasks, unicode
from zeroinstall.injector import download, model
_log... | afb/0install | zeroinstall/injector/packagekit.py | Python | lgpl-2.1 | 13,740 | [
"VisIt"
] | ef84409f78c0935b652e26bc30db8d61dd381ddd9d81d72a1eab80350b447334 |
import os
import django
def populate():
soapdvo2_paper = add_paper(doi_suffix='2047-217X-1-18',
gigasci_url='http://www.gigasciencejournal.com/content/1/1/18',
title='SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler',
... | gigascience/aws-project | populate_gigafig.py | Python | gpl-3.0 | 32,356 | [
"Galaxy"
] | cb663bf09fdadaf416c51940546dd4b7c205afa384056fac2f918d419d15b64a |
# .. coding: utf8
# $Id$
# Author: Engelbert Gruber, Günter Milde
# Maintainer: docutils-develop@lists.sourceforge.net
# Copyright: This module has been placed in the public domain.
"""LaTeX2e document tree Writer."""
__docformat__ = 'reStructuredText'
# code contributions from several people included, thanks to all... | Lyleo/OmniMarkupPreviewer | OmniMarkupLib/Renderers/libs/python3/docutils/writers/latex2e/__init__.py | Python | mit | 124,307 | [
"VisIt"
] | 2b875df4b2658e4520e0079647188dd2a4c0decfca8be4259bc58cd98228d527 |
# -*- coding: utf-8 -*-
"""Displayhook for IPython.
This defines a callable class that IPython uses for `sys.displayhook`.
Authors:
* Fernando Perez
* Brian Granger
* Robert Kern
"""
#-----------------------------------------------------------------------------
# Copyright (C) 2008-2011 The IPython Developmen... | WillisXChen/django-oscar | oscar/lib/python2.7/site-packages/IPython/core/displayhook.py | Python | bsd-3-clause | 11,365 | [
"Brian"
] | db60b50c2264633ca55b48fbd25c7aaf2a95a76289bb805fe48fcd4b8b2fa59e |
# -*- coding: utf-8 -*-
"""
End-to-end tests for the LMS Instructor Dashboard.
"""
from ..helpers import UniqueCourseTest
from ...pages.lms.auto_auth import AutoAuthPage
from ...pages.lms.instructor_dashboard import InstructorDashboardPage
from ...fixtures.course import CourseFixture
class AutoEnrollmentWithCSVTest(... | olexiim/edx-platform | common/test/acceptance/tests/lms/test_lms_instructor_dashboard.py | Python | agpl-3.0 | 5,305 | [
"VisIt"
] | 22acb6cdea6952388063a5a48c3cc53f0a7329ec3cca295bcfe7ad877c4b43e5 |
import demistomock as demisto # noqa: F401
from CommonServerPython import * # noqa: F401
question_data = {
"AssessmentA": [{
"name": "A1a Board Direction", # noqa: E501
"question": "You have effective organisational security management led at board level and articulated clearly "
... | demisto/content | Packs/NCSCCyberAsssessmentFramework/Scripts/NCSCQuestionPopulate/NCSCQuestionPopulate.py | Python | mit | 102,581 | [
"Amber"
] | ed9c37b20106d6a3dd7a9a6f4588cd4ed43c9f466a1e5be177bf633a07f81495 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
#
# Copyright: (c) 2017, F5 Networks Inc.
# GNU General Public License v3.0 (see COPYING or https://www.gnu.org/licenses/gpl-3.0.txt)
from __future__ import absolute_import, division, print_function
__metaclass__ = type
ANSIBLE_METADATA = {'metadata_version': '1.1',
... | kustodian/ansible | lib/ansible/modules/network/f5/_bigip_asm_policy.py | Python | gpl-3.0 | 38,385 | [
"Galaxy"
] | e891f01e9b8aa4418683ff9df7dd83ea751d85affc8817ebc6b75a92aaec3f24 |
#!/usr/bin/env python
"""
@author: cdeline
bifacial_radiance.py - module to develop radiance bifacial scenes, including gendaylit and gencumulativesky
7/5/2016 - test script based on G173_journal_height
5/1/2017 - standalone module
Pre-requisites:
This software is written for Python >3.6 leveraging many Anaconda... | NREL/bifacial_radiance | bifacial_radiance/main.py | Python | bsd-3-clause | 192,259 | [
"EPW"
] | 9b83e1074201a8d84f4eb1d7fb3d3cc7c070315e053f3200cfaae28684faaab8 |
#!/usr/bin/python3
#Use this program to find the minimum of a set of data points subject to error with a Gaussian distribution
#Run this program from deft/papers/fuzzy-fmt with command python3 minimize_FE.py --kT [REQUIRED: temp] --n [REQUIRED: density] --tensor [optional]
#type --help for other options and default... | droundy/deft | papers/fuzzy-fmt/minimize_FE.py | Python | gpl-2.0 | 9,725 | [
"Gaussian"
] | ec6074a2eb193321ca320d1fe9ff91a0c8bf3b7cc746e013be22a6c67059678a |
from modal_noise_script import (save_new_object, set_new_data,
save_baseline_object, save_fft_plot,
save_modal_noise_data,
save_modal_noise_line_plot,
save_modal_noise_bar_plot)
from copy... | rpetersburg/FiberProperties | scripts/modal_noise_geometries.py | Python | mit | 4,741 | [
"Gaussian"
] | 9e10cf9bbda3c95be079277a92fa3c427f64567dd437b3c826ff18ff58a6daf0 |
import sys
import os
import datetime
import pickle
import numpy as np
import matplotlib.pyplot as plt
from pprint import pprint
from scipy.optimize import curve_fit
from scipy import stats
from SP2_particle_record_UTC import ParticleRecord
from struct import *
import hk_new
import hk_new_no_ts_LEO
from scipy import lin... | annahs/atmos_research | LEO_calibration_LF_xsec_method.py | Python | mit | 12,389 | [
"Gaussian"
] | 88dd2aa19551a575ad24a17a1178146bc85ab32d1c5125cf0592f2cee3304565 |
"""
This script is an example of how to use the random gaussian noise generator (type 2)
module. |br|
In this example only one signal is generated.
Both the minimum and the maximum frequency component in the signal is regulated.
After the generation, spectrum fo the signal is analyzed with an Welch analysis
and p... | JacekPierzchlewski/RxCS | examples/signals/gaussNoise2_ex1.py | Python | bsd-2-clause | 1,832 | [
"Gaussian"
] | 5210a653a441e6cb24bd9ba92e2b99c65bf4afa4f1ee83ea999a455aacf635f1 |
# -*- coding: utf-8 -*-
# python-holidays
# ---------------
# A fast, efficient Python library for generating country, province and state
# specific sets of holidays on the fly. It aims to make determining whether a
# specific date is a holiday as fast and flexible as possible.
#
# Authors: dr-prodigy <maurizio.... | dr-prodigy/python-holidays | test/countries/test_united_states.py | Python | mit | 51,071 | [
"COLUMBUS"
] | fdf84232fd6ecfd6d035d1f5d2c4568a05372e52776465a7e4be7093aaec7fb4 |
''' DISET request handler base class for the TransformationDB.
'''
from types import StringType, ListType, DictType, IntType, LongType, StringTypes, TupleType
from DIRAC import gLogger, S_OK, S_ERROR
from DIRAC.Core.DISET.RequestHandler import RequestHa... | avedaee/DIRAC | TransformationSystem/Service/TransformationManagerHandler.py | Python | gpl-3.0 | 36,589 | [
"DIRAC"
] | 785347885d645c522a2a0f6942a6d651be4d0342ee2480ed9b31134c24d50721 |
"""
# Notes:
- This simulation seeks to emulate the CUBA benchmark simulations of (Brette
et al. 2007) using the Brian2 simulator for speed benchmark comparison to
DynaSim. However, this simulation does NOT include synapses, for better
comparison to Figure 5 of (Goodman and Brette, 2008).
- The time taken to si... | asoplata/dynasim-benchmark-brette-2007 | Brian2/brian2_benchmark_CUBA_nosyn_compiled_0001.py | Python | gpl-3.0 | 2,137 | [
"Brian"
] | 35f8932c7e9c25e51f4e848665027c2b042dc6e7f3daea4631adde5aebe7a36a |
# -*- coding: utf-8 -*-
# Author: Vincent Dubourg <vincent.dubourg@gmail.com>
# (mostly translation, see implementation details)
# License: BSD 3 clause
from __future__ import print_function
import numpy as np
from scipy import linalg, optimize
from ..base import BaseEstimator, RegressorMixin
from ..metrics... | toastedcornflakes/scikit-learn | sklearn/gaussian_process/gaussian_process.py | Python | bsd-3-clause | 34,972 | [
"Gaussian"
] | bf2e4560ea62843b6fe3b2a38cc7b179d54d7e66862b8b17bd03b7b589fcf19e |
# -*- coding: utf-8 -*-
#
# brunel-alpha-nest.py
#
# This file is part of NEST.
#
# Copyright (C) 2004 The NEST Initiative
#
# NEST is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 2 of the Licen... | QJonny/CyNest | pynest/examples/brunel-alpha-nest.py | Python | gpl-2.0 | 5,279 | [
"NEURON"
] | 2a86b2cd292d72c0e30d43a74d90832284dbccc0f0ccd8b8500ae2778ba2bc60 |
#!/usr/bin/env python
#
# $Id: check_interface_files.py 9317 2011-06-10 02:09:04Z nathan_george $
#
# Proprietary and confidential.
# Copyright $Date:: 2011#$ Perfect Search Corporation.
# All rights reserved.
#
import sys, os
buildscriptDir = os.path.dirname(__file__)
buildscriptDir = os.path.abspath(os.path.join(buil... | perfectsearch/sandman | code/buildscripts/codescan/check_interface_files.py | Python | mit | 2,687 | [
"VisIt"
] | 6e90d06855a7d3541bfbb0a38a7a3374d1c729c312d28eeb559bcac4b9d17b78 |
"""Cheap and simple API helper
This program is part of "Dive Into Python", a free Python book for
experienced programmers. Visit http://diveintopython.org/ for the
latest version.
"""
__author__ = "Mark Pilgrim (mark@diveintopython.org)"
__version__ = "$Revision: 1.3 $"
__date__ = "$Date: 2004/05/05 21:57:19 $"
__co... | jtraver/dev | python/str/apihelper.py | Python | mit | 1,782 | [
"VisIt"
] | 3bdf70d1d302fd7a0824acc8360bc478eb5c0bccb4eadbf85bcf985552762464 |
"""
Data-driven tests for references.
"""
from __future__ import division
from __future__ import print_function
from __future__ import unicode_literals
import hashlib
import os
import unittest
# TODO it may be a bit circular to use pysam as our interface for
# accessing reference information, since this is the method... | macieksmuga/server | tests/datadriven/test_references.py | Python | apache-2.0 | 4,562 | [
"Biopython",
"pysam"
] | 0c9febb03deef624b31c81fcce594e5be5eb5b05fc15b5fbd9aa29f6aa19ed23 |
"""
Linear Discriminant Analysis (LDA)
"""
# Authors: Clemens Brunner
# Martin Billinger
# Matthieu Perrot
# Mathieu Blondel
# License: BSD 3-Clause
from __future__ import print_function
import warnings
import numpy as np
from scipy import linalg
from .externals.six import string_types
f... | ashhher3/scikit-learn | sklearn/lda.py | Python | bsd-3-clause | 17,625 | [
"Gaussian"
] | 6d616f313b57bef9c2e63369901c13adac179f7cd2f787b729e375dc12367ed0 |
# -*- test-case-name: twisted.trial.test.test_tests -*-
# Copyright (c) 2001-2009 Twisted Matrix Laboratories.
# See LICENSE for details.
"""
Things likely to be used by writers of unit tests.
Maintainer: Jonathan Lange
"""
import doctest, inspect
import os, warnings, sys, tempfile, gc, types
from pprint import pfo... | Donkyhotay/MoonPy | twisted/trial/unittest.py | Python | gpl-3.0 | 63,685 | [
"VisIt"
] | f0951b104f691c9f2216cced179c24f68ef0eff2897fad83356118d8f883ec23 |
# Principal Component Analysis Code :
from numpy import mean,cov,double,cumsum,dot,linalg,array,rank,size,flipud
from pylab import *
import numpy as np
import matplotlib.pyplot as pp
#from enthought.mayavi import mlab
import scipy.ndimage as ni
import roslib; roslib.load_manifest('sandbox_tapo_darpa_m3')
import ro... | tapomayukh/projects_in_python | sandbox_tapo/src/skin_related/BMED_8813_HAP/Features/single_feature/best_kNN_PC/cross_validate_categories_kNN_PC_BMED_8813_HAP_scaled_method_II_area.py | Python | mit | 4,446 | [
"Mayavi"
] | 501d72371a6c4817ce23ce741390e721cb6544b4a5fad1533802198a2fe4697c |
# Author: Henri Starmans
# Company: Hexastorm
# Date: 3-3-2017
import numpy as np
from scipy.integrate import dblquad
from sympy import symbols, diff, cos, sin, sqrt
# Parameters used:
n=1.53 # refractive index should equal s.refractive_index(405e-9,4)
facets = 4 # number of p... | hexastorm/opticaldesign | analytical.py | Python | gpl-3.0 | 4,038 | [
"Gaussian"
] | 132d7d7d69f75f74d18ec7af3a906eeb965a5240e6d8595d0d73ab45cb6579b7 |
from __future__ import unicode_literals
from django.views.generic import TemplateView
from django.conf import settings
from mailchimp2.views import SubscribeFormView
import othersites
class HomeTemplateView(TemplateView):
template_name = "home.html"
def get_context_data(self, *args, **kwargs):
con... | SeattleAttic/HedyNet | HedyNet/HedyNet/views.py | Python | apache-2.0 | 1,082 | [
"VisIt"
] | c12493cd8ee215616c65688750c88beb563101c926d0612793f28832f3c9b5c6 |
class Neuron:
'Represents a neuron'
currentVal = 0
threshold = 1
connections = []
identity = 0
def displayVal(self):
print(self.identity,":",self.currentVal)
for c in self.connections:
print(self.identity," connected to ",c.end.identity)
def addSynapse(self,desti... | will-cromar/needy | ProofOfConcept/toyNetwork.py | Python | mit | 1,982 | [
"NEURON"
] | 3fad4f5233d4e0922f715b446a44ecb04bace135c109e53891e324c488a52365 |
# Copyright 2004 by Frank Kauff and Cymon J. Cox. All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
"""
Parser for ACE files output by PHRAP.
Written by Frank Kauff (fkauff@duke.e... | LyonsLab/coge | bin/last_wrapper/Bio/Sequencing/Ace.py | Python | bsd-2-clause | 18,921 | [
"Biopython"
] | 825fe495f3259a3d307cf325a89c5f50d9775214faebb8d8d0a2b645782bbbd5 |
#!/usr/bin/python
#Django Imports
from django.db import models
from django.conf import settings
from jsonfield import JSONField
from django.utils import timezone
#Local Imports
import swapper
from visit import ScheduledPhoneCall
import utils
from utils.models import TimeStampedModel, BaseQuerySet, ForUserQuerySet
c... | I-TECH-UW/mwachx | contacts/models/interactions.py | Python | apache-2.0 | 8,630 | [
"VisIt"
] | 2f07ce7b173c64c259c2f00ef825688c087a848f3872d8b31f3bb96cf6765426 |
# The MIT License (MIT)
#
# Original work Copyright (c) 2016 Taehoon Kim
# Modified work Copyright (c) 2017, NVIDIA CORPORATION. All rights reserved.
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
#... | ethantang95/DIGITS-GAN | examples/gan/network-celebA.py | Python | bsd-3-clause | 19,111 | [
"Gaussian"
] | d2834323700a16aebafa721a30c003a0595cebd479d50a7ea1667f51797437aa |
import unittest
import numpy as np
import warnings
warnings.simplefilter('error')
from nose.plugins.attrib import attr
from moltools import Water
from moltools import utilz
HF_FILE = """
************************************************************************
*************** Dalton - An Electronic Structu... | fishstamp82/moltools | moltools/test/test_utilz.py | Python | mit | 56,595 | [
"Dalton"
] | dd7e239efe10a97afa9b89521c939164b3f493df16794156430624418f985862 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
This module implements equivalents of the basic ComputedEntry objects, which
is the basic entity that can be used to perform many analyses. ComputedEntries
contain calculated information, typically from VAS... | fraricci/pymatgen | pymatgen/entries/computed_entries.py | Python | mit | 8,859 | [
"VASP",
"pymatgen"
] | 807e5a99dcce87d0db5e263ae504fdedc77a1e840b06d0e5e9a32e6c72b39038 |
#!/usr/bin/env python3
# -*- coding: utf-8 -*-
import sys
import netCDF4 as nc
def copy_dim_def(ncout, ncin, dim_name):
if dim_name not in ncin.dimensions:
print('unknown dimension name: ' + dim_name)
return
if ncin.dimensions[dim_name].isunlimited():
ncout.createDimension(dim_name, No... | woolf1988/noahmp-tools | wrfinput_nc4tonc3sub.py | Python | gpl-3.0 | 3,342 | [
"NetCDF"
] | fe51a0f95ab38ba791ce2febbb12a216417f6f5479e7ad42df82887320965d0d |
# 03.10.2007, c
from __future__ import absolute_import
from sfepy import data_dir
from sfepy.mechanics.matcoefs import stiffness_from_lame
filename_mesh = data_dir + '/meshes/2d/special/circle_in_square.mesh'
# Whole domain $Y$.
region_1000 = {
'name' : 'Y',
'select' : 'all',
}
# Domain $Y_1$.
region_1 = {
... | vlukes/sfepy | tests/test_lcbc_2d.py | Python | bsd-3-clause | 2,172 | [
"VTK"
] | 970b88814e50d026d218be21bf3d25bcaa993702df7d8b39a1406d7af22fca9e |
#!/usr/bin/env python
import os
import sys
import argparse
import pysam
def breakend_count(bamfn, chrom, pos, minmapq=10):
bam = pysam.AlignmentFile(bamfn, 'rb')
count = 0
for read in bam.fetch(chrom, pos-1, pos+1):
if read.is_unmapped or read.is_duplicate:
continue
if rea... | adamewing/tebreak | scripts/misc/genotyper.py | Python | mit | 4,402 | [
"pysam"
] | 74ccd808ec8252242a6cb29274e761dde5a1b3c25f7f44807acf21a95becc219 |
# -*- coding: utf-8 -*-
import operator
import os
import re
import subprocess
import time
import urllib
import urlparse
from xml.dom.minidom import parseString as parse_xml
from module.network.CookieJar import CookieJar
from module.network.HTTPRequest import HTTPRequest
from ..internal.Hoster import Hoster
from ..in... | igel-kun/pyload | module/plugins/hoster/YoutubeCom.py | Python | gpl-3.0 | 47,176 | [
"ADF"
] | b4b4f71ea630591ad1e850c4c2d722819025cd7444b9c4e281a39dbfb1e7f11c |
#! /usr/bin/python3
import argparse
import csv
import sys
import lib.meta as meta
import lib.initialize as init
import lib.sqlite_interface as misc
def parse(parent, *args, **kwargs):
# Add blast database info to sql database
db_parser = parent.add_parser(
'update',
parents=args,
help... | zbwrnz/blastdbm | lib/dbtools.py | Python | unlicense | 2,304 | [
"BLAST"
] | 34ad3576121c9ab8e7396041edcbda1ef6bb878093444fa5b851f2408544d162 |
#!/usr/bin/env python
# -*- coding:utf-8 -*-
# @author:Hieda no Chiaki <i@wind.moe>
import getopt
import os
import sys
import logging
from src.init import init, usage
from src.md5 import md5
from src.post import post_biu, confirm
from src.dir import que
try:
import configparser
import queue
except ImportError... | forblackking/PyBiu | run.py | Python | apache-2.0 | 4,278 | [
"MOE"
] | ea720d5cf035c6da0fe5dd60a8924ed5b14d7a3d89f0f4798a0906c96696417c |
"""
In pacard.py, you will implement the search algorithm based on refutation resolution
which will lead Pacard through the cave of the evil GhostWumpus.
"""
import util
import fileinput
from logic import *
from ditoUtil import *
class SearchProblem:
"""
This class outlines the structure of a search problem... | DominikDitoIvosevic/Uni | AI/lab2/pacard.py | Python | mit | 6,949 | [
"VisIt"
] | 7c3979d92113fdd143ba89326e7b817ece31d360d7d63b48b63e4ba0d0be2278 |
# Copyright 2007-2012 The HyperSpy developers
#
# This file is part of HyperSpy.
#
# HyperSpy is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later ve... | sillvan/hyperspy | hyperspy/tests/signal/test_1D_tools.py | Python | gpl-3.0 | 9,917 | [
"Gaussian"
] | f4a312161f9ad5b2a6c222554d0ba621ffadab5a16915df8f9d3184a33c95bca |
"""
A family of transfer functions that are aware of sheet coordinate
systems.
The transfer functions in this file are allowed to make use of Imagen
patterns and are to be supplied with an appropriate
SheetCoordinateSystem object via the initialize method.
"""
import numpy as np
import param
import copy
from imagen ... | ioam/imagen | imagen/transferfn/sheet_tf.py | Python | bsd-3-clause | 2,202 | [
"Gaussian"
] | 586c504f89c043c2dd0b429238353a5f0546da61fc61eaa12b5958a818886d3a |
# -*- coding: utf-8 -*-
# Copyright (C) 2010-2016 Bastian Kleineidam
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#... | wummel/patool | tests/test_mime.py | Python | gpl-3.0 | 12,775 | [
"ADF"
] | 117a4d2b418c31052048af40c6fac7d9e0ce26d0ceebf47be41aaca194707452 |
# -*- coding: utf-8 -*-
#
# This file is part of couchapp released under the Apache 2 license.
# See the NOTICE for more information.
from __future__ import with_statement
import base64
import logging
import mimetypes
import os
import os.path
import re
import urlparse
import webbrowser
try:
import desktopcouch
... | h4ki/couchapp | couchapp/localdoc.py | Python | apache-2.0 | 16,917 | [
"VisIt"
] | 901a23eb0d689e93b62f3dd9d3b9ad37e80096bc15ffb4b2f2bfcd1dc81fd097 |
# This is a component for running a previoulsy-generated .idf file through EnergyPlus with a different weather file.
#
# Honeybee: A Plugin for Environmental Analysis (GPL) started by Mostapha Sadeghipour Roudsari
#
# This file is part of Honeybee.
#
# Copyright (c) 2013-2020, Mostapha Sadeghipour Roudsari <mostapha@... | mostaphaRoudsari/Honeybee | src/Honeybee_Re-run IDF.py | Python | gpl-3.0 | 11,294 | [
"EPW"
] | af246a46e39819ff20524aed1b8554a3690482bb3cbaab32d227f887a009aee7 |
# $Id: manpage.py 5901 2009-04-07 13:26:48Z grubert $
# Author: Engelbert Gruber <grubert@users.sourceforge.net>
# Copyright: This module is put into the public domain.
"""
Simple man page writer for reStructuredText.
Man pages (short for "manual pages") contain system documentation on unix-like
systems. The pages ar... | dbbhattacharya/kitsune | vendor/packages/nose/doc/manpage.py | Python | bsd-3-clause | 35,518 | [
"VisIt"
] | b73d48dbb7a69750229f54a45f9a24a59f647427d14a18e21d1fdb77c3e007dc |
# -*- coding: utf-8 -*-
import json
from typing import List, Tuple
from django.http import HttpRequest, JsonResponse
from catmaid.apps import get_system_user
from catmaid.control.authentication import requires_user_role
from catmaid.control.common import get_class_to_id_map, get_relation_to_id_map
from catmaid.model... | catmaid/CATMAID | django/applications/catmaid/control/tracing.py | Python | gpl-3.0 | 8,392 | [
"NEURON"
] | e2e6e6f208a95fcc1cc8021eeca71de95503a4ce0e5d53999049ad938d96cae7 |
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class ROrgHsEgDb(RPackage):
"""Genome wide annotation for Human, primarily based on mapping
... | iulian787/spack | var/spack/repos/builtin/packages/r-org-hs-eg-db/package.py | Python | lgpl-2.1 | 1,074 | [
"Bioconductor"
] | 288b5b924725513987f54e67ba7cfc9962f143be28c6d8dd4c536659ef39409b |
import os
import git
from os.path import join, isdir, isfile, splitext
from functools import wraps
import json
import flask
from flask import (
g, Blueprint, request, render_template,
url_for, flash, redirect, send_from_directory, abort
)
from flask_user import login_required, current_user
from flask_babel imp... | gutosurrex/BookCloud | application/views/projects.py | Python | gpl-3.0 | 9,309 | [
"VisIt"
] | 122d19b57fb4342e4c3707ea436345bf819bb984973dc9559c7fddd67362825e |
#!/usr/bin/python
# -*- coding: utf-8 -*-
#
# --- BEGIN_HEADER ---
#
# extcert - External certificate sign up front end
# Copyright (C) 2003-2009 The MiG Project lead by Brian Vinter
#
# This file is part of MiG.
#
# MiG is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Pu... | heromod/migrid | mig/cgi-bin/extcert.py | Python | gpl-2.0 | 1,139 | [
"Brian"
] | fca0488cba677aaa1c219228ff88dd0163f3e0abc80cfd83257e6c1a0cefcf89 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
from __future__ import division, unicode_literals
import re
import math
import subprocess
import itertools
import logging
import glob
import warnings
import numpy as np
from monty.fractions import lcm
import ... | Bismarrck/pymatgen | pymatgen/command_line/enumlib_caller.py | Python | mit | 16,533 | [
"VASP",
"pymatgen"
] | 99c57dd9eb8d616bef8ff249f95dc814e2e4aab56b4beac5cab0ba55a806e99c |
"""An NNTP client class based on RFC 977: Network News Transfer Protocol.
Example:
>>> from nntplib import NNTP
>>> s = NNTP('news')
>>> resp, count, first, last, name = s.group('comp.lang.python')
>>> print('Group', name, 'has', count, 'articles, range', first, 'to', last)
Group comp.lang.python has 51 articles, ran... | MalloyPower/parsing-python | front-end/testsuite-python-lib/Python-3.1/Lib/nntplib.py | Python | mit | 21,051 | [
"Brian"
] | ef98f021748a3034d2e63c3604cc5493259f6e0dd944e5c292cf173c932936e3 |
#!/usr/bin/env python
# encoding: utf-8
# === IMPORTANT ====
# NOTE: In order to support non-ASCII file names,
# your system's locale MUST be set to 'utf-8'
# CAVEAT: DOESN'T work with proxy, the underlying reason being
# the 'requests' package used for http communication doesn't seem
# to work ... | xslidian/bypy | bypy.py | Python | gpl-3.0 | 103,214 | [
"VisIt"
] | 16c3528eaf5b5aa8188d0c7aa8bea234270d7c9d64c9f5fda472bfdd8e21f5e5 |
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