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from __future__ import with_statement
import os
import re
import platform
import time
import fnmatch
import tempfile
from os import environ
from sos.utilities import (ImporterHelper,
import_module,
get_hash_name,
shell_out)
from sos.plug... | codificat/sos | sos/policies/__init__.py | Python | gpl-2.0 | 13,341 | [
"VisIt"
] | 40eeee31769f7df62f7f83da19204b5e2fbc6bccf4896c2b865e2171bf03cebe |
import simplekml
from polycircles.polycircles import Polycircle
polycircle = Polycircle(latitude=40.768085,
longitude=-73.981885,
radius=200,
number_of_vertices=36)
kml = simplekml.Kml()
pol = kml.newpolygon(name="Columbus Circle, Manhattan", oute... | adamatan/polycircles | examples/02-hello_kml.py | Python | mit | 460 | [
"COLUMBUS"
] | 9a13a8c35424d2951d27109c13dda26ceb5f7ac35b77cd47c79aa9c5d7ee92a3 |
#coding=utf-8
from uliweb import expose, functions
from uliweb.i18n import ugettext_lazy as _
@expose('/admin')
class AdminView(object):
def __begin__(self):
functions.require_login()
if not request.user.is_superuser:
error('You have not permisstion to visit the page')
@expose('')
... | limodou/uliweb-admin | uliweb_admin/admin/views.py | Python | bsd-2-clause | 5,824 | [
"VisIt"
] | 67bbe950c21f83bfd0e7dade64fe1836f953c34afcb5c86c7261ea71600d5fa6 |
# Copyright 2015 The Chromium Authors. All rights reserved.
# Use of this source code is governed by a BSD-style license that can be
# found in the LICENSE file.
"""Google OAuth2 related functions."""
import BaseHTTPServer
import collections
import datetime
import functools
import hashlib
import json
import logging
i... | Teamxrtc/webrtc-streaming-node | third_party/depot_tools/auth.py | Python | mit | 25,171 | [
"VisIt"
] | 5eaf86943c26d3a62e1e55e6b7aa746f3caceedbf106d0c6b48b8ab2db831e0b |
# lots to do:
# __ native drawLines
# __ add native drawCurve method
# __ native rectangle/round rect method
# __ native drawEllipse
# __ native drawArc
# __ drawImage support (work on Pyart side of things)
import pyart
from rdkit.sping.pid import *
from rdkit.sping.PDF import pdfmetrics
import Fontmapp... | rdkit/rdkit-orig | rdkit/sping/Pyart/pidPyart.py | Python | bsd-3-clause | 9,273 | [
"RDKit"
] | 273d5393adc7134eb9d6c20fefab0b7e115b6a95037f507025147af7a745eba3 |
""" ConfigurationData module is the base for cfg files management
"""
from __future__ import print_function
from __future__ import absolute_import
from __future__ import division
import os.path
import zlib
import zipfile
import six
from six.moves import _thread as thread
import time
import DIRAC
from diraccfg import ... | yujikato/DIRAC | src/DIRAC/ConfigurationSystem/private/ConfigurationData.py | Python | gpl-3.0 | 13,550 | [
"DIRAC"
] | f05e9a531ad68ef25dd499199553501168fa3be615cb4828ea8f0d9aa85de4ba |
from __future__ import print_function
import unittest
from DIRAC.tests.Utilities.utils import cleanTestDir
from DIRAC import gLogger
from DIRAC.Interfaces.API.Dirac import Dirac
from DIRAC.DataManagementSystem.Client.DataManager import DataManager
class IntegrationTest( unittest.TestCase ):
""" Base class for the ... | chaen/DIRAC | tests/Utilities/IntegrationTest.py | Python | gpl-3.0 | 1,026 | [
"DIRAC"
] | 7b6bd2ad6b78adf1046fc2d43b5315d5cd1391c7060a31dfac7c50f75f25dd89 |
#!/usr/bin/env python
import vtk
from vtk.test import Testing
from vtk.util.misc import vtkGetDataRoot
VTK_DATA_ROOT = vtkGetDataRoot()
class TestPlot3D(Testing.vtkTest):
def testReader3D(self):
names = [("multi-ascii.xyz", "multi-ascii.q"), ("multi-bin-C.xyz", "multi-bin-C.q"), ("multi-bin.xyz", "multi-bi... | HopeFOAM/HopeFOAM | ThirdParty-0.1/ParaView-5.0.1/VTK/IO/Geometry/Testing/Python/Plot3D.py | Python | gpl-3.0 | 3,018 | [
"VTK"
] | 66d57682329a8fbcaab81fc7a49eb6ab910d99bf6a30169d692e64ed3d86da80 |
""" Collection of utilities for dealing with security files (i.e. proxy files)
"""
import os
import stat
import tempfile
from DIRAC import S_OK, S_ERROR
from DIRAC.Core.Utilities import DErrno
from DIRAC.Core.Security.X509Chain import X509Chain # pylint: disable=import-error
from DIRAC.Core.Security.Locations import ... | DIRACGrid/DIRAC | src/DIRAC/Core/Security/ProxyFile.py | Python | gpl-3.0 | 3,506 | [
"DIRAC"
] | ecb4d44fddcc7d1063675bf0ecbafa9d195ae44628cd31687e5eb3739c2dca54 |
#!/usr/local/sci/bin/python
# ipython
# %pdb (the debugger)
# %run Convert_cfnc_AUG2014.py
# this should leave everything interactive
#***************************************
# 22 August 2014 KMW - v1
# Converts a netCDF file to a cf (pp) compliant netCDF
#
#***********************************************************... | Kate-Willett/Climate_Explorer | PYTHON/Convert_TS_cfnc_NOV2014.py | Python | cc0-1.0 | 15,036 | [
"NetCDF"
] | 257a8043ca3a3a0936794b638e70f75bd80eea015d30838ed0c525efe3f6987d |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
#
# Copyright (c) 2017, the cclib development team
#
# This file is part of cclib (http://cclib.github.io) and is distributed under
# the terms of the BSD 3-Clause License.
"""Script for loading data from computational chemistry files."""
import glob
import logging
impor... | cclib/cclib | cclib/scripts/ccget.py | Python | bsd-3-clause | 7,362 | [
"cclib"
] | 8cda69c438b3ae3df2e946918fc8576f92e9b1db5137f0e665d487bd714d4b9f |
"""
Test utils for CCX
"""
import datetime
import pytz
from django.conf import settings
from student.roles import (
CourseCcxCoachRole,
CourseInstructorRole,
CourseStaffRole
)
from student.tests.factories import (
UserFactory
)
from xmodule.modulestore.django import modulestore
from xmodule.modulestor... | louyihua/edx-platform | lms/djangoapps/ccx/tests/utils.py | Python | agpl-3.0 | 4,190 | [
"VisIt"
] | d2f385e39b2006a386683b68435a4d41e99b7aaf9aaeba7fa5c250859764c548 |
from app.drivers import base
from app.drivers.options import lookup_options, sequence_options
from app.readers import spectra as spectrareader
from app.readers import openms as openmsreader
from app.readers import tsv as tsvreader
from app.actions.lookups import spectra as spectralookup
from app.actions.lookups impor... | glormph/msstitch | src/app/drivers/lookups.py | Python | mit | 6,055 | [
"OpenMS"
] | 879bad408ca09e5b78a94cb5f6ab8318642d2ae9867d8e69a64eee8069922d9c |
# coding=utf-8
# --------------------------------------------------------------------------
# Copyright (c) Microsoft Corporation. All rights reserved.
# Licensed under the MIT License. See License.txt in the project root for license information.
# Code generated by Microsoft (R) AutoRest Code Generator.
# Changes may ... | Azure/azure-sdk-for-python | sdk/databoxedge/azure-mgmt-databoxedge/azure/mgmt/databoxedge/v2021_02_01_preview/models/_models_py3.py | Python | mit | 210,928 | [
"ASE"
] | 2db5203387e30cf5283db4e4c6a85d8d16250e4716bf03ece42be1dcc9ef45c1 |
# an application to generate the .xinfo file for data
# reduction from a directory full of images, optionally with scan and
# sequence files which will be used to add matadata.
from __future__ import annotations
import collections
import logging
import os
import sys
import traceback
import h5py
from libtbx import ... | xia2/xia2 | src/xia2/Applications/xia2setup.py | Python | bsd-3-clause | 19,408 | [
"CRYSTAL",
"VisIt"
] | 6f124219e3dae3d1c2d5c38dabcce838c0d4767265b270d2d8f331619a982f2c |
# -*- coding: utf-8 -*-
"""Functions to make 3D plots with M/EEG data."""
# Authors: Alexandre Gramfort <alexandre.gramfort@inria.fr>
# Denis Engemann <denis.engemann@gmail.com>
# Martin Luessi <mluessi@nmr.mgh.harvard.edu>
# Eric Larson <larson.eric.d@gmail.com>
# Mainak Jas <maina... | mne-tools/mne-python | mne/viz/_3d.py | Python | bsd-3-clause | 138,113 | [
"VTK"
] | 24d5f964273e211fa01644421fc5035497f98a8932056a1688e950d1bf695f01 |
from sys import exit
from random import randint
class Scene(object):
def enter(self):
print "This scene is not yet configured. Subclass it and implement enrer()."
exit(1)
class Engine(object):
def __init__(self, scene_map):
self.scene_map = scene_map
def play(self):
curr... | tridvaodin/Assignments-Valya-Maskaliova | LPTHW/ex43.py | Python | gpl-2.0 | 5,149 | [
"BLAST"
] | 225c29adefbeaeea932f5429361ee4ed26af7817d9fbdadfec2e2b36e4864a0d |
# Copyright (c) 2012, 2013, 2014 James Hensman
# Licensed under the GPL v3 (see LICENSE.txt)
import numpy as np
from collapsed_mixture import CollapsedMixture
import GPy
from GPy.util.linalg import mdot, pdinv, backsub_both_sides, dpotrs, jitchol, dtrtrs
from utilities import multiple_mahalanobis
class MOHGP(Collapse... | mzwiessele/GPclust | GPclust/MOHGP.py | Python | gpl-3.0 | 13,484 | [
"Gaussian"
] | f1b40601015291ace4f7443f3e48142c8f9762c9398678a27166900d0a0cc3e7 |
from functools import partial
import numpy
import pandas
from recordlinkage.algorithms.distance import _1d_distance
from recordlinkage.algorithms.distance import _haversine_distance
from recordlinkage.algorithms.numeric import _exp_sim
from recordlinkage.algorithms.numeric import _gauss_sim
from recordlinkage.algori... | J535D165/recordlinkage | recordlinkage/compare.py | Python | bsd-3-clause | 21,547 | [
"Gaussian"
] | a4af7c0ffae04f064af38cd60ea1e892d24aeea33fbf1188f6138bd0f761cf59 |
#!/usr/bin/env python
#-*- coding:utf-8 -*-
#
# nest_graph.py
#
# This file is part of the NNGT project to generate and analyze
# neuronal networks and their activity.
# Copyright (C) 2015-2019 Tanguy Fardet
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU Genera... | Silmathoron/NNGT | nngt/simulation/nest_graph.py | Python | gpl-3.0 | 15,115 | [
"NEURON"
] | bf22c1157fcf998b365df19887af61b46b18271b7a606a0eb198edd34d3da517 |
#!/usr/bin/env python
# vim: sw=2 ts=2
import click
import os
import sys
hexboard_sizes = ['tiny', 'xsmall', 'small', 'medium', 'large', 'xlarge']
@click.command()
### Cluster options
@click.option('--cluster-id', default='demo', show_default=True,
help='Cluster identifier (used for prefixing/naming v... | 2015-Middleware-Keynote/demo-ansible | run.py | Python | apache-2.0 | 14,808 | [
"VisIt"
] | 681d4098ff286042ad96bfbef3735fb4abcf93bc6a51a21034b1258140b20279 |
#!/usr/bin/python
# Copyright (C) 2009 Google Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License"); you may not
# use this file except in compliance with the License. You may obtain a copy of
# the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agr... | google-code/android-scripting | python/build.py | Python | apache-2.0 | 4,901 | [
"ASE"
] | 51ff3d1f84a0e5c1c99718aad5b23047b71cc6ab8c976ab0c39b1e87eabade76 |
"""The suite of window functions."""
import numpy as np
from scipy import special, linalg
from scipy.fftpack import fft
__all__ = ['boxcar', 'triang', 'parzen', 'bohman', 'blackman', 'nuttall',
'blackmanharris', 'flattop', 'bartlett', 'hanning', 'barthann',
'hamming', 'kaiser', 'gaussian', 'gene... | ygenc/onlineLDA | onlineldavb_new/build/scipy/scipy/signal/windows.py | Python | gpl-3.0 | 13,472 | [
"Gaussian"
] | f24a175ce49ec932b63d265d59723a54d99498813856a070f9cec57bb9f28f83 |
# Copyright 2022 The TensorFlow Probability Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law o... | tensorflow/probability | tensorflow_probability/python/math/psd_kernels/exponential_curve.py | Python | apache-2.0 | 4,661 | [
"Gaussian"
] | 756c9cfe73a46542a3892389a221a7711afca2d79840d5b4821bdc2ca58fc191 |
# Copyright 2017 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | mengxn/tensorflow | tensorflow/contrib/kernel_methods/python/mappers/random_fourier_features.py | Python | apache-2.0 | 6,550 | [
"Gaussian"
] | bcd28220d92319c0e7eb97fc8303c8fea34acffb88e27357ba961a7f115e457a |
#! /usr/bin/env python
import sys
import numpy as np
import matplotlib.pyplot as plt
import scipy.io.netcdf as netcdf
from scipy.interpolate import interp1d
plt.ion()
dir0 = '../run/mnc_test_'
file1 = 'state.0000000000.t001.nc'
if len(sys.argv) > 1:
dir0 = dir0 + str(format(sys.argv[1])).zfill(4) + '/'
# physica... | bderembl/mitgcm_configs | gravcurrent/scripts/front_velocity.py | Python | mit | 2,407 | [
"NetCDF"
] | cd1eb2c9c662e6e10b769bd1b09a73680d6881d356e31b735263d9b403f2a7b0 |
#!/usr/bin/env python
import sys
import os
import math
# ensure that the kicad-footprint-generator directory is available
#sys.path.append(os.environ.get('KIFOOTPRINTGENERATOR')) # enable package import from parent directory
#sys.path.append("D:\hardware\KiCAD\kicad-footprint-generator") # enable package im... | SchrodingersGat/kicad-footprint-generator | scripts/Crystals_Resonators_SMD/make_crystal_smd.py | Python | gpl-3.0 | 34,432 | [
"CRYSTAL"
] | 1127b6aa9b328d3792bc49b71cdee8b79f735294305b214dd165d2cdb74ceda9 |
words = [
"abandon",
"ability",
"able",
"about",
"above",
"absent",
"absorb",
"abstract",
"absurd",
"abuse",
"access",
"accident",
"account",
"accuse",
"achieve",
"acid",
"acoustic",
"acquire",
"across",
"act",
"action",
"actor",
"actress",
"actual",
"adapt",
"add",
"addict",
"address",
"adjust",
"admit",
"adult",
"adv... | inuitwallet/bippy | res/wordlists/bip39.py | Python | mit | 19,271 | [
"BLAST",
"CASINO",
"CRYSTAL",
"Galaxy",
"Jaguar",
"VisIt"
] | 306441fc725efe9752248f299a0efc3cc17ff115c7ce7c2dd4f3bc802d3c9f29 |
#!/usr/bin/env python3
########################################################################
# Solves problem 5 from projectEuler.net.
# Finds the least common multiple of the first 20 integers.
# Copyright (C) 2010 Santiago Alessandri
#
# This program is free software: you can redistribute it and/or modif... | sanSS/programming-contests | project-euler/problem005.py | Python | gpl-3.0 | 1,419 | [
"VisIt"
] | 9f064577e6cf5c3a04dd3c6fefa811264093ca4f48a81a1cd477406069576c11 |
from datetime import date
from django.db import models
from django.utils.translation import ugettext_lazy as _
from phonenumber_field.modelfields import PhoneNumberField
class Customer(models.Model):
GENDERS = (
('u', _("Unknown")),
('f', _("Female")),
('m', _("Male")),
)
RELATI... | dogukantufekci/supersalon | supersalon/customers/models.py | Python | bsd-3-clause | 2,495 | [
"VisIt"
] | 228feb95166dc2c080ce9f5f9c6499c17bb6a142eff73fdd661cb97adb4f5c29 |
import re
import copy as cp
import cStringIO
from itertools import ifilter, ifilterfalse
import logging
import operator as op
from antlr3.tree import CommonTree as AST
from lib.typecheck import *
import lib.const as C
import lib.visit as v
from .. import util
from ..anno import parse_anno
from . import class_nonce,... | plum-umd/pasket | pasket/meta/clazz.py | Python | mit | 22,650 | [
"VisIt"
] | 4ce564ed36576ecee0b95a9a00d9137c7b1b29b91bc7760bfd77b89ede99b868 |
from distutils.core import setup
import py2exe
import sys
import os
import os.path
import fnmatch
import glob
import subprocess
import sys
import tarfile
import shutil
#Local Imports
from gui import guids
userdir = os.path.join(os.path.expanduser('~'), 'eopk')
#These may require updating depending o... | gryffon/eggofpanku | src/setup.py | Python | gpl-2.0 | 10,027 | [
"VisIt"
] | 15fd76762b93d56f43f2be8cd327585852912c7a42b271520a6c4a9bf4a7e7be |
from pywps import Process
from pywps import LiteralInput, LiteralOutput
from pywps.inout.literaltypes import AllowedValue
from pywps.inout.literaltypes import AnyValue
from pywps.inout.literaltypes import ValuesReference
# from pywps import BoundingBoxInput
from pywps import BoundingBoxOutput
from pywps import ComplexI... | bird-house/emu | emu/processes/wps_inout.py | Python | apache-2.0 | 11,089 | [
"NetCDF"
] | 5c20c6b7447eceabf4f8b2e8481d4320e30ec12b6e0059c9a7f2ef27042e6dd0 |
# This file is adapted from https://github.com/ray-project/ray/blob/master
# /examples/rl_pong/driver.py
#
# Copyright 2018 Analytics Zoo Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License... | intel-analytics/analytics-zoo | pyzoo/zoo/examples/ray_on_spark/rl_pong/rl_pong.py | Python | apache-2.0 | 11,702 | [
"NEURON",
"ORCA"
] | 8d795ed54e55d5b43a60bcbf8ec028e3e2e21c401d86feffa97f0ec76ed020a8 |
#!/usr/bin/env python
# encoding: utf-8
#
# @Author: Brian Cherinka, José Sánchez-Gallego, Brett Andrews
# @Date: Oct 25, 2017
# @Filename: base.py
# @License: BSD 3-Clause
# @Copyright: Brian Cherinka, José Sánchez-Gallego, Brett Andrews
from __future__ import absolute_import, division, print_function
from astropy ... | albireox/marvin | python/marvin/utils/datamodel/drp/MPL.py | Python | bsd-3-clause | 4,525 | [
"Brian"
] | 52ec5b2b517415e078edf7807cbad9d5dc14e9d0ac4a2001fb09f2edce882725 |
"""
Parses the python AST below, transforms it to C, JITs it, and runs it.
"""
import logging
logging.basicConfig(level=20)
import numpy as np
import ctree.np
from ctypes import *
from ctree.frontend import get_ast
from ctree.c.nodes import *
from ctree.templates.nodes import *
from ctree.transformations import *
f... | ucb-sejits/ctree | examples/TemplateDoubler.py | Python | bsd-2-clause | 3,787 | [
"VisIt"
] | f17da2e71c291d80aafd00c173a2c84f8b43224be8e9162909b9ffebd2183197 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
#
# Copyright 2014-2017 Vincent Noel (vincent.noel@butantan.gov.br)
#
# This file is part of libSigNetSim.
#
# libSigNetSim is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Fou... | vincent-noel/libSigNetSim | libsignetsim/model/sbml/Unit.py | Python | gpl-3.0 | 5,106 | [
"Avogadro"
] | 0a4160ac78e6b60f50e0f08fed5414b7402e8d14338fbf7fc0c38e81e8de5a74 |
# -*- coding: utf-8 -*-
from datetime import datetime, timedelta
from netCDF4 import Dataset
#try:
# from netCDF4 import Dataset
#except:
# from pupynere import netcdf_file as Dataset
def profile_from_nc(filename, pid=None):
""" Extract Argo profiles from a netCDF file
If n is not given, extract ... | castelao/pyARGO | argo/argo.py | Python | bsd-3-clause | 2,280 | [
"NetCDF"
] | 1228745c572085d01919f9f91b2f599d4890287357130644e82d111029734329 |
# Docstrings for generated ufuncs
#
# The syntax is designed to look like the function add_newdoc is being
# called from numpy.lib, but in this file add_newdoc puts the
# docstrings in a dictionary. This dictionary is used in
# _generate_pyx.py to generate the docstrings for the ufuncs in
# scipy.special at the C level... | Eric89GXL/scipy | scipy/special/add_newdocs.py | Python | bsd-3-clause | 185,466 | [
"Gaussian"
] | 2c8b36843f3e789f035a5cd1cfc9f7ece3c97550661f57c47e48b4d0d3bd06c0 |
# -*- coding: utf-8 -*-
"""
Created on Thu Oct 11 16:31:29 2012
@author: Afsar
This module extracts information from the bound structures involved in a complex
It performs mapping between the sequences of the bound and unbound sequences
which are extracted from their structure files. This is done using global
se... | foxtrotmike/pairpred | getPair.py | Python | gpl-3.0 | 5,353 | [
"Biopython"
] | e42bbc53b822db8401298072d919eede92977d11f12c790e46033545986489bf |
#!/usr/bin/python2.7
# -*- coding: utf-8 -*-
# vim:ts=4:sw=4:softtabstop=4:smarttab:expandtab
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
# http://www.apache.org/licenses/LICENSE-2.0
... | kdart/pycopia | WWW/pycopia/WWW/useragents.py | Python | apache-2.0 | 8,690 | [
"VisIt"
] | 610850f92017173ae918cb6d0591cf28e786d8736782c0894167319838821dac |
# -*- coding: utf-8 -*-
"""
pytasa.anisotropy_index - measures of elastic anisotropy
This module provides functions that report on the magnitude of elastic
anisotropy.
"""
import numpy as np
from .polycrystal import isotropic_limits
def zenerAniso(Cij,eCij=np.zeros((6,6))):
"""Returns Zener anisotropy index, A... | alanfbaird/PyTASA | pytasa/anisotropy_index.py | Python | mit | 1,565 | [
"CRYSTAL"
] | 242c6b166f6c840b05f5db51882707c3e341d794176b19f0930d75b302196f79 |
# ##### BEGIN GPL LICENSE BLOCK #####
#
# This program is free software; you can redistribute it and/or
# modify it under the terms of the GNU General Public License
# as published by the Free Software Foundation; either version 2
# of the License, or (at your option) any later version.
#
# This program is distrib... | michielkleinnijenhuis/NeuroBlender | utils.py | Python | gpl-3.0 | 23,305 | [
"Mayavi",
"VTK"
] | c73b163d86941905294a60bb6ab51dabe73c6a2b3f08573f13c245a4d8867f1f |
#!/usr/bin/env python3
# -*- coding: UTF-8 -*-
"""Death by Captcha HTTP and socket API clients.
There are two types of Death by Captcha (DBC hereinafter) API: HTTP and
socket ones. Both offer the same functionalily, with the socket API
sporting faster responses and using way less connections.
To access the socket A... | rtfm-ctf/rtfmapi | providers/captcha/deathbycaptcha.py | Python | gpl-2.0 | 15,730 | [
"VisIt"
] | 5cf9caf5b16ca3931e1b4d0485f8db57bf9b05937ce48f3fc75e7ee92d445647 |
#
#@BEGIN LICENSE
#
# PSI4: an ab initio quantum chemistry software package
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License, or
# (at your option) any later ver... | spring01/libPSI | lib/python/p4util/basislistdunning.py | Python | gpl-2.0 | 31,212 | [
"Psi4"
] | 5a1d9cd5234780b7d58419f5aba09ed7b5750c2df0329373680f745b6bc11d32 |
"""
Generators for random graphs.
"""
import itertools
import math
import networkx as nx
from networkx.utils import py_random_state
from .classic import empty_graph, path_graph, complete_graph
from .degree_seq import degree_sequence_tree
from collections import defaultdict
__all__ = [
"fast_gnp_random_graph",
... | SpaceGroupUCL/qgisSpaceSyntaxToolkit | esstoolkit/external/networkx/generators/random_graphs.py | Python | gpl-3.0 | 43,392 | [
"VisIt"
] | a200b4425462bd8da04081e927e16f491377afd1eb48d0c2ec2b0e1ffe64f9f8 |
#!/galaxy/home/mgehrin/hiclib/bin/python
"""
Returns a bed-like translation of a CDS in which each record corresponds to
a single site in the CDS and includes additional fields for site degenaracy,
position ind CDS, and amino acid encoded.
usage: %prog nibdir genefile [options]
-o, --outfile=o: output file
... | bxlab/HiFive_Paper | Scripts/HiCLib/bx-python-0.7.1/build/scripts-2.7/gene_fourfold_sites.py | Python | bsd-3-clause | 7,698 | [
"Amber",
"Galaxy"
] | 278a9848ea0c499c0a54de70f6bb48400fa6301445effe02b14e6a20477e751d |
#!/usr/bin/env python3
#* This file is part of the MOOSE framework
#* https://www.mooseframework.org
#*
#* All rights reserved, see COPYRIGHT for full restrictions
#* https://github.com/idaholab/moose/blob/master/COPYRIGHT
#*
#* Licensed under LGPL 2.1, please see LICENSE for details
#* https://www.gnu.org/licenses/lgp... | harterj/moose | modules/porous_flow/doc/content/modules/porous_flow/tests/poro_elasticity/terzaghi.py | Python | lgpl-2.1 | 5,002 | [
"MOOSE"
] | 9f8dc1e15909fad594dcd9b4cfef34c9938d5f070b43546d5772724b6d7e82e5 |
from rdkit import Chem
from numpy.testing import assert_almost_equal
from mordred import Calculator, ExtendedTopochemicalAtom
references = {
# Roy et. al. Quantitative Structure-Activity Relationships in Drug Design,
# Predictive Toxicology, and Risk Assessment. p. 65
"O=Cc1c(Cl)cccc1": {
"ETA... | mordred-descriptor/mordred | mordred/tests/test_ETA.py | Python | bsd-3-clause | 4,162 | [
"RDKit"
] | 3412d17c895ca5e5ab241ee7fd3fb1c6d3aa2202617886428da90b9bf6746fde |
#!/usr/bin/env python
#
#
# FreeType 2 glyph name builder
#
# Copyright (C) 1996-2019 by
# David Turner, Robert Wilhelm, and Werner Lemberg.
#
# This file is part of the FreeType project, and may only be used, modified,
# and distributed under the terms of the FreeType project license,
# LICENSE.TXT. By continuing ... | FabianHahn/shoveler | thirdparty/freetype/src/tools/glnames.py | Python | mit | 106,054 | [
"FEFF"
] | b66828452039530dc3d3b4d5e5249fb553ff61475feb0aa6d0f6cddf41703134 |
#!/usr/bin/env python
# -----------------------------------------------------------------------------
# Copyright (c) 2013--, scikit-bio development team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file COPYING.txt, distributed with this software.
# --------------------... | Jorge-C/bipy | skbio/parse/sequences/tests/test_fasta.py | Python | bsd-3-clause | 4,117 | [
"scikit-bio"
] | 559d4c180d6585a1f2f570e4e8c8485b3daaaa639b34e24e4a352cf9508bc63c |
'''DFS-iterative (G, s): //Where G is graph and s is source vertex
let S be stack
S.push( s ) //Inserting s in stack
mark s as visited.
while ( S is not empty):
//Pop a vertex from stack to visit next
v = S.top( )
... | Faraaz54/python_training_problems | hacker_earth/algorithms/depth_first.py | Python | mit | 1,416 | [
"VisIt"
] | ae258a3c8716a5c5d7c7dcbf833b1fd6642970cac1ae47c68435ce329e621e3e |
"""
Ported first from the astroML project: http://astroml.org/
Ported again from the astropy project: http://astropy.org/
Bayesian Blocks for Time Series Analysis
========================================
Dynamic programming algorithm for solving a piecewise-constant model for
various datasets. This is based on the al... | erh3cq/hyperspy | hyperspy/external/astropy/bayesian_blocks.py | Python | gpl-3.0 | 17,836 | [
"Gaussian"
] | d064c80448ec59e8bda4a9b5d051f8c21db8bedd810f953369a569eada4c28bc |
#
# Copyright 2018 Analytics Zoo Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to... | intel-analytics/analytics-zoo | pyzoo/zoo/orca/learn/mxnet/estimator.py | Python | apache-2.0 | 14,429 | [
"ORCA"
] | bc472ff4d8d400573421847e3a543f1e6ac7abda9be68947bd37789fd13a0fed |
# -*- coding: utf-8 -*-
"""High level API functions for the PyBEL processor."""
import zlib
import json
import pybel
import logging
import requests
from functools import lru_cache
import pybel.constants as pc
from pybel.io.sbel import add_sbel_row
from .processor import PybelProcessor
logger = logging.getLogger(_... | johnbachman/indra | indra/sources/bel/api.py | Python | bsd-2-clause | 8,585 | [
"Pybel"
] | 6af64477db8bdcafbf542cfbefc68fb148d13c763d584732c44d8df289ec78a3 |
""" tests for the JobDB module """
#pylint: disable=protected-access, missing-docstring
from __future__ import print_function
import unittest
from mock import MagicMock, patch
from DIRAC import S_OK
MODULE_NAME = "DIRAC.WorkloadManagementSystem.DB.JobDB"
class JobDBTest( unittest.TestCase ):
def setUp( self ):
... | petricm/DIRAC | WorkloadManagementSystem/DB/tests/Test_JobDB.py | Python | gpl-3.0 | 1,039 | [
"DIRAC"
] | 4adf09c8021271b3039091d7ffe1cce0384a436c9c47d13916155431d5f5d901 |
#! /usr/bin/env python
# -*- coding: utf-8 -*-
import warnings
import numpy as np
from propobject import BaseObject
__all__ = ["load_cube","load_spectrum",
"get_spectrum", "get_slice", "get_cube"]
def load_cube(filename,**kwargs):
""" Load a Cube from the given filename
Returns
-------
... | MickaelRigault/pyifu | pyifu/spectroscopy.py | Python | apache-2.0 | 103,921 | [
"Gaussian"
] | 25ab52a597e4f1b6744c7b7065748c1fad5f12be9967f6bed9d4eb875b791667 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
Created on Nov 14, 2012
"""
__author__ = "Anubhav Jain"
__copyright__ = "Copyright 2012, The Materials Project"
__version__ = "0.1"
__maintainer__ = "Anubhav Jain"
__email__ = "ajain@lbl.gov"
__date__ = ... | dongsenfo/pymatgen | pymatgen/util/tests/test_io_utils.py | Python | mit | 937 | [
"pymatgen"
] | f90f80657d75815ad9c0b3c33d17e8df9096464f4fa0249036a47f6830bd7569 |
# Copyright (C) 2012,2013
# Max Planck Institute for Polymer Research
# Copyright (C) 2008,2009,2010,2011
# Max-Planck-Institute for Polymer Research & Fraunhofer SCAI
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the terms of t... | capoe/espressopp.soap | src/analysis/StaticStructF.py | Python | gpl-3.0 | 3,731 | [
"ESPResSo"
] | 4e9b451cb887d5b7d729bdd60a6ad4b6ca9c4377e019d4f0ade44cb98eb29abb |
"""
The module implements Tamaraw WF countermeasure proposed by Wang and Goldberg.
"""
from obfsproxy.transports.wfpadtools import const
from obfsproxy.transports.wfpadtools.wfpad import WFPadTransport
import obfsproxy.common.log as logging
log = logging.get_obfslogger()
class TamarawTransport(WFPadTransport):
... | Yawning/obfsproxy-wfpadtools | obfsproxy/transports/wfpadtools/specific/tamaraw.py | Python | bsd-3-clause | 2,575 | [
"VisIt"
] | 0819387bf6e64d0b38da3667c6e018dd7d0c4862d7afea86de077e1c6049f743 |
# -*- coding: utf-8 -*-
from __future__ import absolute_import
import datetime
from django.conf import settings
from django.contrib.contenttypes.models import ContentType
from django.contrib.sites.models import Site
from django.http import HttpResponse
from django.test import TestCase
from django.utils.timezone import ... | christi3k/zulip | zerver/tests/test_signup.py | Python | apache-2.0 | 80,490 | [
"VisIt"
] | 2b60972a4810cf2cac9949e98f70b45616a52ba6b7becbb447e6f5ded93c02c4 |
#!/usr/bin/python
# ---------------------------------------------------------------------------------------------------
# Copyright 2015 UCAS
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
... | jCliveStewart/robotframework-DebugUI | build/lib/DebugUiLibrary/DebugUiLibrary.py | Python | apache-2.0 | 3,078 | [
"TINKER"
] | 847a2c7c66117e16f5e191780c371fe8b33c5af1640852f6121395567b5c0ea4 |
class World:
story_text = "Hello commander!\nI see you have awoken from cryosleep. I am afraid there is some bad news...\n" \
"We have crash landed on a distant planet outside of our own Galaxy, the ship is \ndamaged and we need" \
" to find a way to survive...perhaps even return ... | CarriChapp/Nouvel-Espace | world.py | Python | mit | 678 | [
"Galaxy"
] | 16b831323da489f98db4e1be8f67012f35b8bed39f7336867af90461f86325ca |
# Made by Mr. Have fun! Version 0.2
# rewritten by Rolarga, Version 0.3
# Shadow Weapon Coupons contributed by BiTi for the Official L2J Datapack Project
# Visit http://forum.l2jdp.com for more details
import sys
from com.l2scoria.gameserver.model.quest import State
from com.l2scoria.gameserver.model.quest import Quest... | zenn1989/scoria-interlude | L2Jscoria-Game/data/scripts/quests/224_TestOfSagittarius/__init__.py | Python | gpl-3.0 | 9,723 | [
"VisIt"
] | 3483fd820a3e7b823ba217d6af5a556058d4485635d800890e47286349e4f5b8 |
########################################################################
# File: FTSJob.py
# Author: Krzysztof.Ciba@NOSPAMgmail.com
# Date: 2013/04/02 13:41:20
########################################################################
"""
.. moduleauthor:: Krzysztof.Ciba@NOSPAMgmail.com
FTSJob class representing single ... | hgiemza/DIRAC | DataManagementSystem/Client/FTSJob.py | Python | gpl-3.0 | 27,914 | [
"DIRAC"
] | 0a3b19ca4f66345f158337d0e66ea4f7d38990acf110c29d316578cacd6a870b |
# -*- coding: utf-8 -*-
# Copyright 2022 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or... | googleapis/python-appengine-admin | tests/unit/gapic/appengine_admin_v1/test_firewall.py | Python | apache-2.0 | 85,557 | [
"Octopus"
] | a2192cf012c3b29556a515dd9ac5a52225311b8b039a384056587036ddbfabc9 |
"""
A collection of functions to find the weights and abscissas for
Gaussian Quadrature.
These calculations are done by finding the eigenvalues of a
tridiagonal matrix whose entries are dependent on the coefficients
in the recursion formula for the orthogonal polynomials with the
corresponding weighting function over ... | chaluemwut/fbserver | venv/lib/python2.7/site-packages/scipy/special/orthogonal.py | Python | apache-2.0 | 34,870 | [
"Gaussian"
] | a9c55047947e77d8d5b2bba11b36120205abd1634bbfc6ece3c756afa5803174 |
from __future__ import unicode_literals
import base64
import datetime
import hashlib
import json
import netrc
import os
import re
import socket
import sys
import time
import xml.etree.ElementTree
from ..compat import (
compat_http_client,
compat_urllib_error,
compat_urllib_parse_urlparse,
compat_urlpa... | svagionitis/youtube-dl | youtube_dl/extractor/common.py | Python | unlicense | 35,542 | [
"VisIt"
] | 34299e65255861740b7ebbc9c8885f498bb859489d51bb8c8a61e820b645bedf |
import numpy as np
from ase.units import Hartree, Bohr
from ase.dft.kpoints import monkhorst_pack
import gpaw.mpi as mpi
from gpaw.poisson import PoissonSolver, FFTPoissonSolver
from gpaw.occupations import FermiDirac
from gpaw.wavefunctions.pw import PW
from gpaw import parsize_domain, parsize_bands, sl_default, sl_... | ajylee/gpaw-rtxs | gpaw/parameters.py | Python | gpl-3.0 | 8,530 | [
"ASE",
"GPAW"
] | e052da7725bd838db9f99568dbffc843d18048aee1577602bfadfe85923247cd |
# -*- coding: utf-8 -*-
# Form implementation generated from reading ui file 'stereoprojUI.ui'
#
# Created by: PyQt4 UI code generator 4.12.1
#
# WARNING! All changes made in this file will be lost!
from PyQt4 import QtCore, QtGui
try:
_fromUtf8 = QtCore.QString.fromUtf8
except AttributeError:
def _fromUtf8(... | mompiou/stereo-proj | stereoprojUI.py | Python | gpl-2.0 | 38,195 | [
"CRYSTAL"
] | 04eed0c1b40b2bc9b96bceedd4ef96d0e54084519ff88743926a63180653c9d3 |
#
# Copyright (C) 2001 greg Landrum
#
from __future__ import print_function
from rdkit.ML.Data import Quantize
from rdkit.Dbase import DbConnection
from rdkit import RDConfig
def runIt(namesAndTypes,dbConnect,nBounds,resCol,typesToDo=['float']):
results = map(lambda x:x[0],dbConnect.GetColumns(namesAndTypes[resCo... | adalke/rdkit | rdkit/ML/Data/FindQuantBounds.py | Python | bsd-3-clause | 1,719 | [
"RDKit"
] | a418a9ebce51acef190895667b1f621cf9af960087024ab9330a9f534ae884a7 |
from ase.thermochemistry import HarmonicThermo
######################################################
# Script for calculating free energies of adsorbates #
######################################################
## more information here: https://wiki.fysik.dtu.dk/ase/ase/thermochemistry/thermochemistry.html
name = ... | chemeng444/chemeng444.github.io | ASE/Transition_States/get_ads_free_energy.py | Python | gpl-2.0 | 1,014 | [
"ASE"
] | 27f22da8b42f670e77eea4257533ec9a0af97df909c0ee8745e845b6dbbdf159 |
import inspect
from inspect import getsource
import os.path as op
from pkgutil import walk_packages
import re
import sys
from unittest import SkipTest
import pytest
import mne
from mne.utils import requires_numpydoc, _pl
public_modules = [
# the list of modules users need to access for all functionality
'mne... | pravsripad/mne-python | mne/tests/test_docstring_parameters.py | Python | bsd-3-clause | 10,485 | [
"Mayavi"
] | 36f9e4baea4fa27ecfd03421fa74c9e8665ddd4355fa825e5b739772fa65a2ec |
#FILE INFORMATION
"""
Based mostly on the traub91proto.g by Dave Beeman
Main difference is addition of Glu and NMDA channels
The 1991 Traub set of voltage and concentration dependent channels
Implemented as tabchannels by : Dave Beeman
R.D.Traub, R. K. S. Wong, R. Miles, and H. Michelson
Journal of Neurophysiolog... | BhallaLab/moose-examples | snippets/proto18.py | Python | gpl-2.0 | 22,511 | [
"MOOSE"
] | 4b4621794775d08781c23f729297fa7e4537f2115e2d7797385a5b178afebbe0 |
#!/usr/bin/env python
'''
Created on 4 Feb 2010
@author: tcezard
'''
import os, sys, logging
from optparse import OptionParser
import utils
from utils import utils_param, utils_logging, compare_version_number,\
get_bwa_version, longest_common_substr_from_start
import command_runner
from utils.GenomeLoader import G... | tcezard/RADmapper | bin/run_BWA_commands.py | Python | mit | 13,794 | [
"BWA"
] | d2e6e0e9408689a76132908bc2c7ca087b3108a803f8a63bde6e8d9656c639e9 |
#
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not us... | darionyaphet/spark | python/pyspark/ml/classification.py | Python | apache-2.0 | 110,826 | [
"Gaussian"
] | 31f9c63e97bf4c5db938ad78677dda8d41ab96d94bbf0bfb42e4757cad5e36a3 |
#!/usr/bin/env python
import os
import re
import json
import glob
import shutil
import argparse
import subprocess
import numpy as np
from enum import Enum
from Bio import SeqIO
from cpt_gffParser import gffParse, gffWrite
from Bio.SeqRecord import SeqRecord
from cpt_convert_mga_to_gff3 import mga_to_gff3
from gff3 impo... | TAMU-CPT/galaxy-tools | tools/phage/autoreopen.py | Python | gpl-3.0 | 30,571 | [
"BLAST"
] | a9fcf86e04eb3c542f2d69cd90f47e4ad42bdab4045248b03d024c9a326be427 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
from __future__ import division, unicode_literals
import numpy as np
import pickle
from pymatgen.util.testing import PymatgenTest
from pymatgen.core.periodic_table import Element, Specie
from pymatgen.core.si... | Bismarrck/pymatgen | pymatgen/core/tests/test_sites.py | Python | mit | 10,854 | [
"pymatgen"
] | 0cca35fd61286de62b289ab041fe99f13679a8dbf9a1d678cff7788ddfee09e1 |
import datetime
import time
import zlib
import hashlib
import redis
import re
import mongoengine as mongo
import random
import requests
import HTMLParser
import tweepy
from collections import defaultdict
from BeautifulSoup import BeautifulSoup
from mongoengine.queryset import Q
from django.conf import settings
from dja... | dosiecki/NewsBlur | apps/social/models.py | Python | mit | 147,717 | [
"BLAST"
] | 6d879b127e671ec4b61db83ba74e29eed3b1c28c8c0f7627507c15aa845651e7 |
# -*- coding: utf-8 -*-
# python-holidays
# ---------------
# A fast, efficient Python library for generating country, province and state
# specific sets of holidays on the fly. It aims to make determining whether a
# specific date is a holiday as fast and flexible as possible.
#
# Author: ryanss <ryanssdev@icl... | ryanss/python-holidays | holidays/countries/honduras.py | Python | mit | 5,085 | [
"COLUMBUS"
] | 832b8f67e98b02939aa5be0f7e205688fe8c077f2abdcb021dc099d08ce12511 |
"""Python wrapper for GPAW's native XC functionals."""
import _gpaw
from gpaw import debug
codes = {
'LDA': -1,
'PBE': 0,
'revPBE': 1,
'RPBE': 2,
'PW91': 14,
'TPSS': 20,
'M06L': 21,
'revTPSS': 22
}
# NOTE: when adding MGGA functionals to the above
# list, self.type must be set to M... | robwarm/gpaw-symm | gpaw/xc/kernel.py | Python | gpl-3.0 | 2,185 | [
"GPAW"
] | 6cb487980565a925ef4ede7259d58def888ff77dd3b131c021b6d8bd99ffb8a4 |
import argparse
def ParsePrep(p_prep):
prep_inp = p_prep.add_argument_group('Input options')
prep_inp.add_argument('-s', dest='sg', required=True, help='sgRNA Information Table (required)', metavar='<sg file>')
prep_inp.add_argument('-f', dest='fwd', required=True, help='Forward Fastq File (required)', met... | bm2-lab/cage | src/ui/ui_prep.py | Python | mit | 1,119 | [
"BWA"
] | 48e2d0469c1a0987c82042c40b2867b5c408d5b606bc5a3a5b4b1dd878a050da |
# -*- coding: UTF-8 -*-
# Copyright 2011-2020 Rumma & Ko Ltd
# License: GNU Affero General Public License v3 (see file COPYING for details)
import datetime
from dateutil.easter import easter
from dateutil.rrule import DAILY, WEEKLY, MONTHLY, YEARLY
from django.db import models
from django.conf import settings
from d... | lino-framework/xl | lino_xl/lib/cal/choicelists.py | Python | bsd-2-clause | 8,604 | [
"VisIt"
] | 45e9223e0e604304add51d8cdfbcff9b81d3f0a299a222c3f7a74f377fda2647 |
import collections
import itertools
import traceback
import operator
import sys
import re
from datetime import timedelta
from urllib import urlencode
from urlparse import urljoin
from twisted.words.protocols import irc
from twisted.internet import reactor, defer, error, protocol, task
from twisted.web import xmlrpc
fr... | pound-python/infobob | infobob/irc.py | Python | isc | 22,005 | [
"VisIt"
] | 1339a05c54a923efcd9bb6718c19721cebd1ef7493330e76fb987120b7c2a2d1 |
from ase.lattice.surface import fcc100, add_adsorbate
from ase.constraints import FixAtoms, FixedPlane
from ase.calculators.emt import EMT
from ase.optimize import QuasiNewton
# 2x2-Al(001) surface with 3 layers and an
# Au atom adsorbed in a hollow site:
slab = fcc100('Al', size=(2, 2, 3))
add_adsorbate(slab, 'Au', 1... | askhl/ase | doc/tutorials/constraints/diffusion4.py | Python | gpl-2.0 | 932 | [
"ASE"
] | da97b8c4dcab266b6e8d03ee6d204c04684269a0f7c9e4204fb57de45a2f1a6e |
from satistjenesten.utils import load_area_def
from satistjenesten.image import add_graticules_to_img
from satistjenesten.image import add_caption_to_img
from satistjenesten.image import save_reduced_jpeg
from copy import deepcopy, copy
from pyresample import kd_tree, geometry
from osgeo import gdal, osr
from PIL impor... | mitkin/satistjenesten | satistjenesten/scene.py | Python | mit | 10,156 | [
"Gaussian"
] | 6998fcbd1daa59c4bd8ff6b783cf070e51fa6f56a06c1d4246e6b47d89799d98 |
# vim: ft=python fileencoding=utf-8 sts=4 sw=4 et:
# Copyright 2015-2021 Florian Bruhin (The Compiler) <mail@qutebrowser.org>
# Copyright 2015-2018 lamarpavel
#
# This file is part of qutebrowser.
#
# qutebrowser is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public Lic... | qutebrowser/qutebrowser | tests/unit/browser/webkit/test_cache.py | Python | gpl-3.0 | 6,127 | [
"VisIt"
] | 67b9d97f766fcdf1bb578fafc68222c95c5a589cd68483eb6ee009a4ef5c533b |
import collections
import datetime
from merc import feature
from merc import message
INFO_TEMPLATE = """\
____
__/ / /___ _ ___ ________
/_ . __/ ' \/ -_) __/ __/
/_ __/_/_/_/\__/_/ \__/
/_/_/
The Modern Extensible Relay Chat daemon, version {version}.
Copyright (C) {year}, #merc-devel
This softwar... | merc-devel/merc | merc/features/rfc1459/info.py | Python | mit | 2,758 | [
"VisIt"
] | b97f5c90a1388aa57c897dba5765032f43a9eba1c6128e0b65c01feb0fc7ba69 |
"""
============= DON'T MODIFY THIS FILE ============
This is the boilerplate default configuration file.
Changes and additions to settings should be done in
/bp_content/themes/<YOUR_THEME>/config/ rather than this config.
"""
import os
config = {
# webapp2 sessions
'webapp2_extras.sessions': {'secret_key': ... | ThomasMarcel/webapp-course | resources/gae-boilerplate/bp_includes/config.py | Python | apache-2.0 | 4,450 | [
"VisIt"
] | ad8550542de2d8f04e8f5df447550415085410a3256ccdf18d9f4badaec39bdf |
import sys
import tempfile
import shutil
import time
import os
import pandas
from pandas.testing import assert_frame_equal
sys.path.insert(1, "../../")
import h2o
from tests import pyunit_utils
from h2o.estimators.gbm import H2OGradientBoostingEstimator
genmodel_name = "h2o-genmodel.jar"
def download_mojo(model, ... | michalkurka/h2o-3 | h2o-py/tests/testdir_misc/pyunit_mojo_predict.py | Python | apache-2.0 | 12,620 | [
"Gaussian"
] | b20fc5de5c5a76425783ccab965c8d31686ccdb375bdb81dbeaeb466df99b51a |
import socket, re, sys
from codecs import encode, decode
from . import shared
def get_whois_raw(domain, server="", previous=None, rfc3490=True, never_cut=False, with_server_list=False, server_list=None):
previous = previous or []
server_list = server_list or []
# Sometimes IANA simply won't give us the right root W... | LukeMurphey/splunk-network-tools | src/bin/network_tools_app/pythonwhois/net.py | Python | apache-2.0 | 4,591 | [
"MOE"
] | a4bbf16405d2c7b65bc41fda3bcb1726b795e3f6f8ae13ee60da3d212fcbc133 |
# -*- coding: utf-8 -*-
"""
Acceptance tests for studio related to the outline page.
"""
import itertools
import json
from datetime import datetime, timedelta
from unittest import skip
from nose.plugins.attrib import attr
from unittest import skip
from pytz import UTC
from base_studio_test import StudioCourseTest
fro... | Edraak/edraak-platform | common/test/acceptance/tests/studio/test_studio_outline.py | Python | agpl-3.0 | 84,471 | [
"VisIt"
] | 83a4135caa60f0f25772d5bcb87fcff44819fcd4719456f705780fcdf70670a2 |
#!/usr/bin/env python
# pragma: no testimport
###############################################################################
##
## Copyright (C) 2014-2016, New York University.
## Copyright (C) 2011-2014, NYU-Poly.
## Copyright (C) 2006-2011, University of Utah.
## All rights reserved.
## Contact: contact@vistrails.or... | minesense/VisTrails | vistrails/tests/runtestsuite.py | Python | bsd-3-clause | 21,059 | [
"VTK"
] | 23e74e1088b33bcfc96cf56b4aae0ee5a08a46958aa9a1f0edd527ece67157d8 |
"""Unit test for util.py"""
from .. import user
from ..util import lat2W
from .. import util
from ..weights import W, WSP
from ...io.FileIO import FileIO as psopen
from ... import examples as pysal_examples
import numpy as np
import unittest
class Testutil(unittest.TestCase):
def setUp(self):
self.w = use... | sjsrey/pysal_core | pysal_core/weights/tests/test_util.py | Python | bsd-3-clause | 7,502 | [
"COLUMBUS"
] | a5026ea8e8de816436fa7da8e898c369616f9c3faeeca5bd2c87db1de9611ed9 |
#!/usr/bin/env python
#
# Author: Qiming Sun <osirpt.sun@gmail.com>
#
'''
Access molecule geometry.
Mole.natm is the total number of atoms. It is initialized in Mole.build()
function.
'''
from pyscf import gto
mol = gto.M(
atom = '''
O 0.000000 0.000000 0.117790
H 0.000000 0.755453 -0.... | sunqm/pyscf | examples/gto/10-atom_info.py | Python | apache-2.0 | 795 | [
"PySCF"
] | 4b6c02d4800a49260694f548d216591dd6e842ebdf39f53d0599b5156c5ac234 |
#! /usr/bin/env python
#
# Hey guys, here's a quick demo of how to use Gem's python client library to
# build something awesome and quick. Below I've outlined the specs for a simple
# CLI wallet app.
#
# round-cli: A super simple command-line bitcoin wallet to show off Gem's API!
#
# Requirements:
# - A user can create... | GemHQ/round-py | examples/cli.py | Python | mit | 10,173 | [
"VisIt"
] | d1d3a051274953035749e0c0c9ae5d0f6154df5e4fc19b6eab12d02f7c650680 |
"""
tests for advanced course
"""
from bok_choy.promise import EmptyPromise
from bok_choy.web_app_test import WebAppTest
from unittest import skip
from ...fixtures.course import CourseFixture
from ...pages.common.logout import LogoutPage
from ...pages.lms.auto_auth import AutoAuthPage
from ...pages.lms.ga_login_and_re... | nttks/edx-platform | common/test/acceptance/tests/lms/test_ga_advanced_course.py | Python | agpl-3.0 | 17,943 | [
"VisIt"
] | b12333f3d8dd3de315eab989744c881c019a61d4bec8606a327734879a28b64e |
#
# Copyright (C) 2013,2014 The ESPResSo project
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any l... | mgusenbauer/espresso | samples/python/lj_liquid.py | Python | gpl-3.0 | 6,853 | [
"ESPResSo"
] | bdc5dffdf32bc15a23ba34185bc3afd05702e274b02abd1aeda2e652381efb8e |
""" ConfigurationData module is the base for cfg files management
"""
import os.path
import zlib
import zipfile
import _thread
import time
import DIRAC
from diraccfg import CFG
from DIRAC.Core.Utilities.File import mkDir
from DIRAC.Core.Utilities import List, Time
from DIRAC.Core.Utilities.ReturnValues import S_OK, S... | DIRACGrid/DIRAC | src/DIRAC/ConfigurationSystem/private/ConfigurationData.py | Python | gpl-3.0 | 15,213 | [
"DIRAC"
] | 495f9f52052c50f0889d1fb4995309893ae5d11b89edd7548276c783de86054d |
# Copyright 2009 Google Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, ... | rhijul/jaikuengine | common/im.py | Python | apache-2.0 | 11,250 | [
"VisIt"
] | f6a5fa551a08a03f8e7f3522b88ddf5440d98204bd5d3f10f5b644fb8366e975 |
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