text stringlengths 12 1.05M | repo_name stringlengths 5 86 | path stringlengths 4 191 | language stringclasses 1
value | license stringclasses 15
values | size int32 12 1.05M | keyword listlengths 1 23 | text_hash stringlengths 64 64 |
|---|---|---|---|---|---|---|---|
from cardboard import types
from cardboard.ability import (
AbilityNotImplemented, spell, activated, triggered, static
)
from cardboard.cards import card, common, keywords, match
@card("Raven Familiar")
def raven_familiar(card, abilities):
def raven_familiar():
return AbilityNotImplemented
def r... | Julian/cardboard | cardboard/cards/sets/urzas_legacy.py | Python | mit | 28,079 | [
"Elk",
"TINKER"
] | 76cd22e17a4a53fef90901f6769bc6e2560d1a5ebcd7c957e360b44ad58fbba3 |
#!usr/bin/env python
# This file is part of splitleafs.
#
# Splitleafs is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
... | jbarnoud/splitleafs | test_splitleafs.py | Python | gpl-3.0 | 13,324 | [
"Gromacs"
] | 4638d57a55784b1832b6084c4f7f3b11167101c4d5471e502b6b53a79c1ed02c |
import rospy
import random
import std_msgs.msg
from randgen_omni_dataset.msg import CustomOdometry as customOdometryMsg
from randgen_omni_dataset.srv import SendString, SendStringResponse
LEFT_T_WF = 0.010
RIGHT_T_WF = 0.015
MEAN_R1_WF = 0.000
STD_R1_WF = 0.001
MEAN_R2_WF = 0.000
STD_R2_WF = 0.001
MEAN_T_R = 0
STD_T_... | guilhermelawless/randgen_omni_dataset | randgen_omni_dataset/src/randgen_omni_dataset/odometry.py | Python | gpl-3.0 | 8,155 | [
"Gaussian"
] | 99fc5a0bcb778a5c22bf3cf545911170774fa63c2fdf394987d34d112338a32a |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
'''
=========================================================================
Program: Visualization Toolkit
Module: TestNamedColorsIntegration.py
Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen
All rights reserved.
See Copyright.txt or http://www.... | HopeFOAM/HopeFOAM | ThirdParty-0.1/ParaView-5.0.1/VTK/Rendering/Volume/Testing/Python/VolumePicker.py | Python | gpl-3.0 | 9,122 | [
"VTK"
] | 6e080973cebd441e59336b3b4e3bd22372e4a3a757b5978df00c0b2501a84488 |
# -*- coding: utf-8 -*-
#
# Copyright 2012 - 2013 Brian R. D'Urso
#
# This file is part of Python Instrument Control System, also known as Pythics.
#
# Pythics is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundati... | dursobr/Pythics | pythics/examples/laplace.py | Python | gpl-3.0 | 3,999 | [
"Brian"
] | faaf825e4725b647251a970d859c559b5c749480a020873fea337716800b3ce1 |
import requests
import nb
import distributions
def load_data():
# Loading, formatting and partitioning the data set:
# This data set is described here: https://archive.ics.uci.edu/ml/datasets/Statlog+(German+Credit+Data)
raw_data = requests.get("https://archive.ics.uci.edu/ml/machine-learning-database... | ashkonf/HybridNaiveBayes | src/test.py | Python | mit | 4,131 | [
"Gaussian"
] | a581d3ef8efa6a1eb5aa03d0d52676f1370c9280651e627adce65fd2a612abfb |
#!/usr/bin/env python3
import os
import sys
import random
import time
from random import seed, randint
import argparse
import platform
from datetime import datetime
import imp
from time import sleep
import fileinput
# from run_parameter import *
parser = argparse.ArgumentParser(
description="This is a python3 scri... | luwei0917/awsemmd_script | archive/run.py | Python | mit | 6,757 | [
"Brian",
"LAMMPS"
] | bdb18f86d456791b322117f51dae148654ebe0dae5f30ae0f7a765829909074f |
import idc
import idautils
import idaapi
import time
from sets import Set
import pydot
out_file = "call_graph.png"
def generate_graph():
callees = dict()
# Loop through all the functions in the binary
for function_ea in idautils.Functions():
f_name = GetFunctionName(function_ea)
# For each of the incoming r... | sam-b/ida-scripts | call_graph.py | Python | unlicense | 1,724 | [
"VisIt"
] | 083ab8016edd009efd53142199d0e931eed073e4555d0aed381df563ee8efd66 |
# $HeadURL$
__RCSID__ = "$Id$"
from DIRAC import gConfig, S_OK, S_ERROR
from DIRAC.Core.Utilities.SOAPFactory import getSOAPClient
def _processListReturn( soapReturn ):
data = []
for entry in soapReturn:
data.append( str( entry ) )
return data
def _processListDictReturn( soapReturn ):
data = []
for ent... | coberger/DIRAC | Core/Security/VOMSService.py | Python | gpl-3.0 | 3,570 | [
"DIRAC"
] | 1628a83f60d8098aa90183e2787a228f5c9dcbef44f45ad26cad6d5ea33a5579 |
# coding=utf-8
# Copyright 2022 The Uncertainty Baselines Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by ap... | google/uncertainty-baselines | baselines/clinc_intent/sngp.py | Python | apache-2.0 | 20,747 | [
"Gaussian"
] | ae5755ea060e6a95fdfb500b87989ac50f5f9f9c686c8f3b34b31cd7037ff53b |
"""Disentangling Time-series Spectra with Gaussian Processes: Applications to Radial Velocity Analysis
https://github.com/iancze/psoap
"""
# Always prefer setuptools over distutils
from setuptools import setup, find_packages
# To use a consistent encoding
from codecs import open
from os import path
import numpy as n... | iancze/PSOAP | setup.py | Python | mit | 4,818 | [
"Gaussian"
] | 1d945d8e90261664d746734d0055fb0bfe1e316a5b19ba94d462fe2b74a78955 |
import numpy as np
from mdtraj.testing import eq
from sklearn.base import clone
from sklearn.metrics import adjusted_rand_score
from msmbuilder.cluster import LandmarkAgglomerative
random = np.random.RandomState(2)
def test_1():
x = [random.randn(10, 2), random.randn(10, 2)]
n_clusters = 2
model1 = Lan... | stephenliu1989/msmbuilder | msmbuilder/tests/test_agglomerative.py | Python | lgpl-2.1 | 1,925 | [
"MDTraj"
] | 8ee7feec3a2c02c5ed1be67a9dd41553fb0f03f1531eac7103ca2818668625c7 |
from __future__ import print_function
import sys
import argparse
import string
import functools
from Bio.SeqIO import parse, FastaIO
from Bio.Data import IUPACData
from . import util
from . import ctleptop
# Maximum amount of permutations for ambiguous sequences that will
# be generated
MAX_PERMS = 100
def parse_a... | VDBWRAIR/bio_bits | bio_bits/fasta.py | Python | gpl-2.0 | 4,383 | [
"Biopython"
] | 8966c901545932baecb7b954162fc12f567e7aee9acc17391a3301eccf1b8336 |
#!/usr/bin/env ganga
import getpass
from distutils.util import strtobool
b=Job()
b.application=DaVinci(version='v36r5')
b.application.optsfile='NTupleMaker.py'
b.outputfiles=[DiracFile('Output.root')]
b.inputdata=browseBK()
b.splitter = SplitByFiles(filesPerJob=10)
com=raw_input('Enter Comment for this job: ')
b.comm... | Williams224/davinci-scripts | kstetappipieta/pipietaJobSubmit.py | Python | mit | 405 | [
"DIRAC"
] | 562a45c81b7cbfdb27ae1e4c98235e115df8b2b3a91a65afe87a671f9ccc156e |
""" This is a test of the AuthServer. Requires authlib, pyjwt, dominate
It supposes that the AuthDB is present and installed in DIRAC
"""
import pytest
from mock import MagicMock
import DIRAC
DIRAC.initialize() # Initialize configuration
from DIRAC import S_OK
from DIRAC.FrameworkSystem.private.authorization im... | DIRACGrid/DIRAC | tests/Integration/Framework/Test_AuthServer.py | Python | gpl-3.0 | 3,402 | [
"DIRAC"
] | dbfaa6698b10fbf8781e91c7904dfdd49b945bcee2ab90821c996ffb2a060673 |
# coding: utf-8
from __future__ import division, unicode_literals
"""
TODO: Modify module doc.
"""
__author__ = "Shyue Ping Ong"
__copyright__ = "Copyright 2012, The Materials Project"
__version__ = "0.1"
__maintainer__ = "Shyue Ping Ong"
__email__ = "shyuep@gmail.com"
__date__ = "6/6/13"
import unittest
import os... | rousseab/pymatgen | pymatgen/io/tests/test_nwchem.py | Python | mit | 12,007 | [
"NWChem",
"pymatgen"
] | aab2e2083707aa19b4d3259704bd55f66b3a399edf0ed1b1fa0672bc94505243 |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2021 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This file is part of Psi4.
#
# Psi4 is free software; you can redistribute it and/or modify
#... | ashutoshvt/psi4 | psi4/driver/procrouting/empirical_dispersion.py | Python | lgpl-3.0 | 13,952 | [
"Psi4"
] | 0989ed1016a07fee07fbc164f14856ba5847bdf768654fc19ae3712cddec9e8f |
# !usr/bin/env python2
# -*- coding: utf-8 -*-
#
# Licensed under a 3-clause BSD license.
#
# @Author: Brian Cherinka
# @Date: 2017-04-28 11:34:06
# @Last modified by: Brian Cherinka
# @Last Modified time: 2018-07-13 13:59:20
from __future__ import print_function, division, absolute_import
import pytest
from marvi... | albireox/marvin | python/marvin/tests/web/conftest.py | Python | bsd-3-clause | 8,329 | [
"Brian"
] | 0945a9f31519070cf0e09dd933bbccf9e022ab61ca47b9e63979d1b3ac0f79d2 |
# $Id$
# pylint: disable-msg=E1101
# pylint: disable-msg=W0201
import math
import sys
import os
import os.path
import bisect
import heapq
import pprint
import time
import random
import tempfile
import shutil
import cPickle
import logging
import socket
from cStringIO import StringIO
try:
import threading
except Impo... | lidaobing/itcc | itcc/ccs2/loopclosure.py | Python | gpl-3.0 | 29,130 | [
"TINKER"
] | cf59ec3205f789d78e74a656c8e507298f96bdf3da7a77ae85f7c6d947c62b4e |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
This module provides utilities to chunk large sequences and display progress
bars during processing.
"""
import math
def get_chunks(sequence, size=1):
"""
Args:
sequence ():
size ... | gVallverdu/pymatgen | pymatgen/util/sequence.py | Python | mit | 1,493 | [
"pymatgen"
] | 7ae25560e61e79eaf458c972ef58d74a5f7d14210df0e4ff7da342b3f849327a |
# Copyright 2019 The TensorFlow Probability Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law o... | tensorflow/probability | tensorflow_probability/python/bijectors/ffjord.py | Python | apache-2.0 | 17,331 | [
"Gaussian"
] | 187bb6fe6cb0362e43b0209534d7117b5ca8ac83ade629f931f8030207bfdf60 |
##############################################################################
# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-64... | skosukhin/spack | var/spack/repos/builtin/packages/r-affxparser/package.py | Python | lgpl-2.1 | 2,177 | [
"Bioconductor"
] | 9782dcae599f2dfffb288d6f6054f8b824d7e0cd11b5b12d9df802a4901c6beb |
# -*- coding: utf-8 -*-
#
# balancedneuron.py
#
# This file is part of NEST.
#
# Copyright (C) 2004 The NEST Initiative
#
# NEST is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 2 of the License,... | terhorstd/nest-simulator | pynest/examples/balancedneuron.py | Python | gpl-2.0 | 7,621 | [
"NEURON"
] | 464a14ad60ab5e796068826b21e58ea9cf0e70eff5a007c0adc1721473f91786 |
from ase import Atom
from gpaw import GPAW
from gpaw.cluster import Cluster
from gpaw.test import equal
h=0.40
txt = None
txt = 'mgga_sc.txt'
s = Cluster([Atom('H')])
s.minimal_box(4., h=h)
s.set_initial_magnetic_moments([1])
# see https://trac.fysik.dtu.dk/projects/gpaw/ticket/244
s.set_cell((8.400000,8.400000,8.400... | robwarm/gpaw-symm | gpaw/test/mgga_sc.py | Python | gpl-3.0 | 834 | [
"ASE",
"GPAW"
] | 73755496e22b007a9ea8aaa34401029dd36532030cc1e55911d08ca51939f59f |
from rope.base import pyobjects, exceptions, stdmods
from rope.refactor import occurrences
from rope.refactor.importutils import importinfo
class ImportInfoVisitor(object):
def dispatch(self, import_):
try:
method_name = 'visit' + import_.import_info.__class__.__name__
method = ge... | skycucumber/restful | python/venv/lib/python2.7/site-packages/rope/refactor/importutils/actions.py | Python | gpl-2.0 | 13,992 | [
"VisIt"
] | 2f4ed3f178d2a4dc9b02f8fb0e87f15ca79632526c19e49ce559ee432fd46fb5 |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2016 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of ... | kannon92/psi4 | psi4/driver/procedures/proc_util.py | Python | gpl-2.0 | 5,730 | [
"Psi4"
] | c12b1317f4bda2c71fcc818d633c2ce050641154e19dc91a2ee79735e2ca0348 |
"""
Copyright (c) 2015 Andreea Georgescu
Created on Fri May 8 15:04:52 2015
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 2 of the License, or
(at your option) any later version.
... | SamWitte/Codds_DarkMatter | src/Data/CDMSSiGeArtif.py | Python | gpl-2.0 | 3,834 | [
"Gaussian"
] | a85b639f57a78054f1588682bda01fbe293d6149029707ffb2db687974bb5a50 |
#!/usr/bin/python
import sys, os, os.path
f = open('body/pressureDrop.tex', 'w')
f.write( '''
\\begin{figure}[!htbp]
\centering
\includegraphics[width=0.8\\textwidth]{figs/pressureDrop}
\caption{The pressure drop of different points in time domain from:
a) Xiao et al.'s CICP paper, b) present ... | iurnus/SediFoam | cases/auto-testing/test-report-generation/essential/pressureDrop.py | Python | gpl-2.0 | 566 | [
"LAMMPS"
] | 9de1b0ec35e534c83017a8c5e42b3c1eb732eb4a168847092bd79c82d4d3e0d2 |
# -*- coding: utf-8 -*-
#
# Copyright (C) 2015-2019 Bitergia
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 3 of the License, or
# (at your option) any later version.
#
# This ... | grimoirelab/GrimoireELK | grimoire_elk/enriched/enrich.py | Python | gpl-3.0 | 43,044 | [
"Elk"
] | 40c21f9f02dac2f921f0f14612035d16dadf6404bee26c8b133c0af5a211aba1 |
import sys
import pysam
from os import listdir
from os.path import isfile, join
from BCBio import GFF
class Replicons(object):
def __init__(self, control_libs, tagged_libs, gff_folder, features,
sub_features):
self._libs = control_libs + tagged_libs
self._gff_folder = gff_folder
... | tbischler/PEAKachu | peakachulib/replicons.py | Python | isc | 4,159 | [
"pysam"
] | 8b2dcf03c893a883873393b5ccc62014b3f0598ee002f1d6a828ce777050f133 |
# $Id$
from itcc.tinker import tinker
__revision__ = '$Rev$'
def main():
import sys
if 2 <= len(sys.argv) <= 3:
lines = tinker.constrain(*(sys.argv[1:]))
for x in lines:
print x,
else:
import os.path
print >> sys.stderr, 'Usage: %s xyzfname [param]' % os.path.b... | lidaobing/itcc | itcc/tinker/constrain.py | Python | gpl-3.0 | 400 | [
"TINKER"
] | c3f77b9fca52d6c1ddb02385db24ee391180f4c752e2ea2feab67b9babd6f16b |
#!/usr/bin/env python
# coding: utf-8
import sys
import os
import re
vimcommands = {
"set": "se",
"function": "fu",
"return": "retu",
"echo": "ec",
"echoerr": "echoe",
"echohl": "echoh",
"echomsg": "echom",
"echon": "echon",
"else": "el",
"elseif": "elsei",
"endif": "en",
... | EinfachToll/vsc | ftplugin/vsc.py | Python | mit | 20,177 | [
"BLAST"
] | c4dbdac898fef8827d41da820cd56b8a1ede897aef74aef7baeb3c4a64004637 |
#!/usr/bin/env python
# I create cubature using Gauss-Legendre or Gauss-Hermite quadrature.
# The first input chooses which.
# The second input is the number of dimensions over which to integrate.
# The next inputs are for GL the bounds of the UQ space supports,
# for GH they are the average and standard deviation of t... | zat1gi/stochastic | auxiliary/cubature/gen_ordered_cubature.py | Python | bsd-3-clause | 4,477 | [
"Gaussian"
] | d802ab12be7f0058ff581115e724053d0c27dab2452f8d4dc453df1b3cdf415d |
# -*- coding: utf-8 -*-
# Copyright (C) Duncan Macleod (2014-2020)
#
# This file is part of GWpy.
#
# GWpy is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option)... | areeda/gwpy | gwpy/timeseries/timeseries.py | Python | gpl-3.0 | 84,167 | [
"Gaussian"
] | 372ad29ebefdef02725d684ba85c36daa7e880fb4ed103476d28f061b47b34c0 |
"""
Save per-interface and per-feed configuration information.
"""
# Copyright (C) 2009, Thomas Leonard
# See the README file for details, or visit http://0install.net.
import os
from xml.dom import minidom, XMLNS_NAMESPACE
from zeroinstall import support
from zeroinstall.support import basedir
from zeroinstall.inj... | rammstein/0install | zeroinstall/injector/writer.py | Python | lgpl-2.1 | 2,595 | [
"VisIt"
] | 2c47b995e8219431efa48747f5a00b805826c1899fabe1b95cb5056d059ee8d5 |
import vtk
import sys
import os
from os import listdir
from os.path import isfile, join
import Helpers
import Utils
import math
outputFolder = "sv_workspace/"
# modelsFolder = "../models/"
args = sys.argv
# if len(args) == 1:
# modelFn = "new.obj"
# meshFn = "new.vtp"
# webModelsFolder = "webmodels"
# el... | oblakr24/simvis-masters | python_parser/PreParser.py | Python | gpl-3.0 | 8,096 | [
"VTK"
] | b8bf7a44ac3f82e0b39612528eec638d6175383cdb54348931641d21695fc20f |
"""
Some reports for the analysis
"""
import shutil
import os
import sys
import copy
from contextlib import closing
from collections import Counter
import pandas as pd
import math
import pysam
import scipy.stats as stats
from bcbio.utils import splitext_plus, file_exists, safe_makedir, chdir, append_stem
from bcbio.l... | chapmanb/bcbio-nextgen | bcbio/wgbsseq/cpg_caller.py | Python | mit | 12,269 | [
"pysam"
] | 0e7ebefb7f184466a9b11e92e1cc606448e7ba4b39c17ecaf054f4c818def026 |
"""
Acceptance tests for the teams feature.
"""
import json
import ddt
from flaky import flaky
from nose.plugins.attrib import attr
from uuid import uuid4
from ..helpers import UniqueCourseTest
from ...fixtures import LMS_BASE_URL
from ...fixtures.course import CourseFixture
from ...fixtures.discussion import (
T... | vasyarv/edx-platform | common/test/acceptance/tests/lms/test_teams.py | Python | agpl-3.0 | 47,538 | [
"VisIt"
] | 45780d3c283a507a5d0c7f85b583d7aa781a86897d1837c13df9acc418abcaa2 |
# -*- coding: utf-8 -*-
from __future__ import unicode_literals
from django.conf import settings
from django.conf.urls import include, url
from django.conf.urls.static import static
from django.contrib import admin
from django.views.generic import TemplateView
from django.views import defaults as default_views
urlpat... | zooming-tan/Project-AENEAS | config/urls.py | Python | bsd-3-clause | 1,353 | [
"VisIt"
] | 95a765b4d6378deab934b444055ecd2f8d2aa25f194f2018cc4599def18ab571 |
# Copyright (c) 2012 The Chromium Authors. All rights reserved.
# Use of this source code is governed by a BSD-style license that can be
# found in the LICENSE file.
"""Produces localized strings.xml files for Android.
In cases where an "android" type output file is requested in a grd, the classes
in android_xml will... | chromium/chromium | tools/grit/grit/format/android_xml.py | Python | bsd-3-clause | 7,188 | [
"xTB"
] | f97e90086267ec55aa18f6b7fda4d7afb2c3397dc55359110f36053ddb158f26 |
# SVC library - usefull Python routines and classes
# Copyright (C) 2006-2008 Jan Svec, honza.svec@gmail.com
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, o... | jurcicek/extended-hidden-vector-state-parser | svc/ui/gmtk/__init__.py | Python | gpl-2.0 | 38,894 | [
"Gaussian"
] | 4c65a4c2e9d3b505ad5d8930fa42bba4a58ed169d7b10f70dc17d822e987355b |
import os.path
import struct
from .. import FileIO
from ...weights import W
from warnings import warn
__author__ = "Myunghwa Hwang <mhwang4@gmail.com>"
__all__ = ["Wk1IO"]
class Wk1IO(FileIO.FileIO):
"""
MATLAB wk1read.m and wk1write.m that were written by Brian M. Bourgault in 10/22/93
Opens, reads, an... | sjsrey/pysal_core | pysal_core/io/IOHandlers/wk1.py | Python | bsd-3-clause | 16,958 | [
"Brian"
] | 7aea7c05ae876563298ac6fe746a6e357c44b4766ed8c14406f079b2c70540c3 |
"""
Functions for generating triggers from lists of devices.
"""
from typing import TypeVar
from Firefly.helpers.device import CONTACT, CONTACT_CLOSE, CONTACT_OPEN, MOTION, MOTION_ACTIVE, MOTION_INACTIVE, PRESENCE, PRESENT, NOT_PRESENT
TRIGGER_ACTION = TypeVar('TRIGGER_ACTION', dict, str)
def generate_and_trigger(... | Firefly-Automation/Firefly | Firefly/helpers/automation/trigger_generators.py | Python | apache-2.0 | 5,216 | [
"Firefly"
] | 448167889b3382e2e06efd79dacf469c77dc8bb3d6f3a4cf654e00d9616de0df |
# -*- Mode: Python; test-case-name: flumotion.test.test_feedcomponent010 -*-
# vi:si:et:sw=4:sts=4:ts=4
# Flumotion - a streaming media server
# Copyright (C) 2004,2005,2006,2007,2008,2009 Fluendo, S.L.
# Copyright (C) 2010,2011 Flumotion Services, S.A.
# All rights reserved.
#
# This file may be distributed and/or mo... | flumotion-mirror/flumotion | flumotion/component/feedcomponent010.py | Python | lgpl-2.1 | 37,620 | [
"GULP"
] | ba5901dde477ff5e5882e3be1a3999213756ca7812a431ad07d3b9c959ac21a8 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
#
# PCR-GLOBWB (PCRaster Global Water Balance) Global Hydrological Model
#
# Copyright (C) 2016, Edwin H. Sutanudjaja, Rens van Beek, Niko Wanders, Yoshihide Wada,
# Joyce H. C. Bosmans, Niels Drost, Ruud J. van der Ent, Inge E. M. de Graaf, Jannis M. Hoch,
# Kor de Jong,... | UU-Hydro/PCR-GLOBWB_model | model/spinUp.py | Python | gpl-3.0 | 8,730 | [
"NetCDF"
] | 97773e4d319ae0ca869e6c1b282c75125e3ce298e84df27098fd3cdf945e9df2 |
#!/usr/bin/python
#
# @author: Gaurav Rastogi (grastogi@avinetworks.com)
# Eric Anderson (eanderson@avinetworks.com)
# module_check: supported
# Avi Version: 17.1.1
#
# Copyright: (c) 2017 Gaurav Rastogi, <grastogi@avinetworks.com>
# GNU General Public License v3.0+ (see COPYING or https://www.gnu.org/licenses... | noroutine/ansible | lib/ansible/modules/network/avi/avi_systemconfiguration.py | Python | gpl-3.0 | 6,560 | [
"VisIt"
] | e91e6b5d314ecf3846a7ccd18ccf5a5c06f3e6d7ec7908a53da8fbd05ff765de |
#!/usr/bin/env python
# Copyright 2014-2019 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# U... | sunqm/pyscf | pyscf/x2c/sfx2c1e.py | Python | apache-2.0 | 10,994 | [
"PySCF"
] | 86dd92af8146ec873e4258d8360f3877537ab78048a9e39155e33983a70432f5 |
import sys
import os
from nltk.corpus import wordnet as wn
def getChildList(synset):
names = []
lemma_names = []
try:
children = synset.hyponyms()
for child in children:
if type(child.lemma_names) is list:
lemma_names = child.lemma_names
else:
... | li-xirong/jingwei | model_based/dataengine/knowledge.py | Python | mit | 1,257 | [
"Jaguar"
] | 067a3a922b503e1dc4f01f048bae878eca33330021dd955d3224cb3b5e866066 |
"""
============================================================
Empirical evaluation of the impact of k-means initialization
============================================================
Evaluate the ability of k-means initializations strategies to make
the algorithm convergence robust as measured by the relative stan... | RPGOne/Skynet | scikit-learn-0.18.1/examples/cluster/plot_kmeans_stability_low_dim_dense.py | Python | bsd-3-clause | 4,324 | [
"Gaussian"
] | d38c946338cd316d05ee3a0aeca968ec9d9a0b28bda4368fff12dc222a199152 |
# Copyright 2014-2018 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by appl... | gkc1000/pyscf | pyscf/nao/m_siesta2blanko_denvec.py | Python | apache-2.0 | 1,392 | [
"PySCF"
] | e33e9e022088353fee789c4d46e047f28f2dd194de769d89977854af30198a9c |
#!/usr/bin/env python
# encoding: utf-8
# Thomas Nagy, 2010-2018 (ita)
"""
Classes and functions enabling the command system
"""
import os, re, imp, sys
from waflib import Utils, Errors, Logs
import waflib.Node
# the following 3 constants are updated on each new release (do not touch)
HEXVERSION=0x2001100
"""Constan... | projecthamster/hamster | waflib/Context.py | Python | gpl-3.0 | 21,029 | [
"VisIt"
] | 70c9936b5b0a88af5206978b98f18cdf33c9743976c67319d77e88fc06da328c |
"""
mbed SDK
Copyright (c) 2011-2019 ARM Limited
SPDX-License-Identifier: Apache-2.0
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required ... | adfernandes/mbed | tools/toolchains/arm.py | Python | apache-2.0 | 30,412 | [
"VisIt"
] | c361142ae7ca5a63fe2281c177095eb9be882cb1b662ee8c68c0b82a63c3402e |
from __future__ import with_statement
import os
import sys
import unittest
import warnings
if sys.version_info < (2, 6):
warnings.simplefilter("ignore")
else:
warnings.simplefilter("always")
import numpy
from pyresample import kd_tree, utils, geometry, data_reduce
def mp(f):
f.mp = True
return f
... | jhamman/pyresample | pyresample/test/test_kd_tree.py | Python | lgpl-3.0 | 47,115 | [
"Gaussian"
] | 3b2cd1c4e8c50fcba818127294e80ef027402965fd03300caef7c020c9e91c8e |
#!/usr/bin/env python
import sys
import unittest
from PyQt5 import QtWidgets
import vtk
from peacock.ExodusViewer.plugins.ContourPlugin import main
from peacock.utils import Testing
class TestContourPlugin(Testing.PeacockImageTestCase):
"""
Testing for ContourControl widget.
"""
qapp = QtWidgets.QAp... | backmari/moose | python/peacock/tests/exodus_tab/test_ContourPlugin.py | Python | lgpl-2.1 | 4,481 | [
"VTK"
] | cc6e4b25eed6361f69c650ddef27a7338b3ab628b37a876f72260ae6f67d47f8 |
import numpy as np
from .control import model_setup
from .cp_confocal import twod
from .cp_triplet import trip
from .cp_mix import double_pnum
# 2D + 2D + TT Gauß
# Model 6044
def CF_Gxy_gauss_2D2DTT(parms, tau):
u""" Two-component two-dimensional free diffusion
with a Gaussian laser profile, including t... | paulmueller/PyCorrFit | pycorrfit/models/model_confocal_tt_2d_2d.py | Python | gpl-2.0 | 4,799 | [
"Gaussian"
] | e5578683e0753e167cacacc75488ee27e9b99f160889dfb737f3891aebf26015 |
# emacs: -*- mode: python; py-indent-offset: 4; indent-tabs-mode: nil -*-
# vi: set ft=python sts=4 ts=4 sw=4 et:
import numpy as np
from scipy import ndimage as nd
from skimage import feature as skft
from scipy.spatial import distance
from nibabel.affines import apply_affine
def mesh_3d_grid(x, y, z):
"""Create... | BNUCNL/FreeROI | froi/algorithm/imtool.py | Python | bsd-3-clause | 8,753 | [
"Gaussian"
] | bdebc1c6b54ff7952b4a470b777824edbe75a555d985663d45fcca71a6d38684 |
# -*- coding: utf-8 -*-
# This file is public domain according to its author, Brian Hsu
"""Gist directive for reStructuredText."""
import requests
from docutils.parsers.rst import Directive, directives
from docutils import nodes
from nikola.plugin_categories import RestExtension
class Plugin(RestExtension):
""... | getnikola/nikola | nikola/plugins/compile/rest/gist.py | Python | mit | 2,407 | [
"Brian"
] | 68b6979250e1deefbea8ced6a0c9d3c8a187a6b24549d367485cb275af37475b |
# Copyright (C) 2012,2013
# Max Planck Institute for Polymer Research
# Copyright (C) 2008,2009,2010,2011
# Max-Planck-Institute for Polymer Research & Fraunhofer SCAI
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the terms of t... | BackupTheBerlios/espressopp | src/analysis/PressureTensorLayer.py | Python | gpl-3.0 | 3,419 | [
"ESPResSo"
] | 8fa82678be6fac1163b1ed262f1cd0d9bf2b5ad93f857f101cdb190bd6bb328e |
########################################################################
# $HeadURL$
# File : Optimizer.py
# Author : Stuart Paterson
########################################################################
"""
The Optimizer base class is an agent that polls for jobs with a specific
status and minor status pair. ... | Sbalbp/DIRAC | WorkloadManagementSystem/Agent/OptimizerModule.py | Python | gpl-3.0 | 12,150 | [
"DIRAC"
] | 4231547551cb072a586d4cb899507ea99a21ee6ac7aa7f94d0f2924fe0001aea |
# -*- coding: utf-8 -*-
"""
End-to-end tests for the LMS.
"""
from textwrap import dedent
from unittest import skip
from nose.plugins.attrib import attr
from bok_choy.promise import EmptyPromise
from bok_choy.web_app_test import WebAppTest
from ..helpers import (
UniqueCourseTest,
load_data_str,
generate_... | jswope00/griffinx | common/test/acceptance/tests/lms/test_lms.py | Python | agpl-3.0 | 38,835 | [
"VisIt"
] | 564450aea9df855f886e893c3a12bf954884e1a4eb90cb8d68850469d8ba7897 |
from fabric.api import env, run, sudo, cd, abort, roles, execute, warn_only
env.use_ssh_config = True # username, identity file (key), hostnames for machines will all be loaded from ~/.ssh/config
# COMMON COMMANDS
# fab update_test - puts newest master on the test server
# fab deploy_live:tag=git_tag_from_repo - roll... | CottageLabs/sysadmin | fabric/oaspectrum/fabfile.py | Python | mit | 4,958 | [
"Octopus"
] | 58f4dd14fc6e22429bc2131324edb8f991198462daa98acb0f7732c6b06a94f5 |
from __future__ import (absolute_import, division, print_function,
unicode_literals)
from matplotlib.externals import six
from matplotlib.externals.six.moves import reduce, xrange, zip, zip_longest
import math
import warnings
import numpy as np
from numpy import ma
import matplotlib
from mat... | yuanagain/seniorthesis | venv/lib/python2.7/site-packages/matplotlib/axes/_axes.py | Python | mit | 275,037 | [
"Gaussian"
] | cc6e9870d64be4d7d3c19afa989f1bef7ea7cdf5b188a55a5845a2a9e686a86e |
# ----------------------------------------------------------------------------
# Copyright (c) 2013--, scikit-bio development team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file COPYING.txt, distributed with this software.
# --------------------------------------------... | gregcaporaso/scikit-bio | skbio/stats/ordination/tests/test_correspondence_analysis.py | Python | bsd-3-clause | 8,193 | [
"scikit-bio"
] | 648bc18bf08a6bbfc3dd2104c004fd435977a33403e22bf822625f130bc06866 |
# -*- coding: utf-8 -*-
"""
Generators for random graphs.
"""
# Copyright (C) 2004-2011 by
# Aric Hagberg <hagberg@lanl.gov>
# Dan Schult <dschult@colgate.edu>
# Pieter Swart <swart@lanl.gov>
# All rights reserved.
# BSD license.
__author__ = "\n".join(['Aric Hagberg (hagberg@lanl.gov)',
... | jni/networkx | networkx/generators/random_graphs.py | Python | bsd-3-clause | 29,650 | [
"VisIt"
] | f21ce107b24e967a89621393079a039cd67aea0744434b37c2489f0dfd1065fd |
##########################################################################
#
# Copyright 2010 VMware, Inc.
# All Rights Reserved.
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without res... | xranby/apitrace | retrace.py | Python | mit | 11,308 | [
"VisIt"
] | e8344bf2ac23e8530d8edbf1338a8fb78e358930c9eb407c32ee614cc7c4acfc |
#!/usr/bin/python
import os
import sys
import time
import glob
import tempfile
def fail(subject, email=None, filename='/dev/null'):
if email is not None:
assert os.system('mail -s "%s" %s < %s' %
(subject, email, filename)) == 0
raise SystemExit
day = time.localtime()[6]
if '-... | robwarm/gpaw-symm | tools/nightly_test_niflheim.el6.py | Python | gpl-3.0 | 3,731 | [
"ASE",
"GPAW"
] | 37c632bc3efe674215d5725d748448cf45fc436fd91d7bd955ec10105d0953e3 |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2017 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This file is part of Psi4.
#
# Psi4 is free software; you can redistribute it and/or modify
#... | jH0ward/psi4 | psi4/driver/procrouting/dft_funcs/libxc_xc_funcs.py | Python | lgpl-3.0 | 11,826 | [
"Psi4"
] | a57ec802d5c3beb82b44e17a8b598e6e3f720f10d7fa0c3d8aa7f6755763eab7 |
# (C) British Crown Copyright 2014 - 2016, Met Office
#
# This file is part of Iris.
#
# Iris is free software: you can redistribute it and/or modify it under
# the terms of the GNU Lesser General Public License as published by the
# Free Software Foundation, either version 3 of the License, or
# (at your option) any l... | zak-k/iris | lib/iris/tests/unit/fileformats/netcdf/test__load_cube.py | Python | gpl-3.0 | 10,257 | [
"NetCDF"
] | 29afa76dd77b4d926c8e352226c7137231ed7a11c63becdef6a3e5f7262aa861 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""Extract fasta sequences that are above a minimal coverage.
Usage:
%program <input_file> <min_coverage> <output_file>"""
import sys
import re
try:
from Bio import SeqIO
except:
print "This program requires the Biopython library"
sys.exit(0)
try:
f... | wkh124/wkh124 | fasta_extract_min_coverage.py | Python | gpl-3.0 | 755 | [
"Biopython"
] | 0647a7d8cd748a1533e38e5cf02e227cc48ebefeab6228bec6743863b71fdf09 |
from __future__ import nested_scopes
"""
GSIServer - Contributed by Ivan R. Judson <judson@mcs.anl.gov>
################################################################################
#
# SOAPpy - Cayce Ullman (cayce@actzero.com)
# Brian Matthews (blm@actzero.com)
# Gregory Warnes (G... | nzsquirrell/p2pool-myriad | oldstuff/SOAPpy/GSIServer.py | Python | gpl-3.0 | 5,238 | [
"Brian"
] | 1697a931fc78a4568fa22d5e9887949137a4ba904dacfeb14c37cff927c82e62 |
""" ModuleBase - contains the base class for workflow modules. Defines several common utility methods.
The modules defined within this package are developed in a way to be executed by a DIRAC.Core.Worfklow.Worfklow.
In particular, a DIRAC.Core.Workflow.Worfklow object will only call the "execute" function, tha... | Sbalbp/DIRAC | Workflow/Modules/ModuleBase.py | Python | gpl-3.0 | 21,560 | [
"DIRAC"
] | 706546e7fdc5346ad01b2a30dac989e2b7ba4f71e330bcc18a7abc4d6526264f |
"""
This class a wrapper around elasticsearch-py. It is used to query
Elasticsearch database.
"""
__RCSID__ = "$Id$"
from datetime import datetime
from datetime import timedelta
import certifi
from elasticsearch import Elasticsearch
from elasticsearch_dsl import Search, Q, A
from elasticsearch.exceptions import Co... | hgiemza/DIRAC | Core/Utilities/ElasticSearchDB.py | Python | gpl-3.0 | 14,183 | [
"DIRAC"
] | 47535fcdc80d7cfa8148880f46fe2ee6bebbad23459a7c8f0ecbf8a7dce9db92 |
#--------------------------------------------------------------------------
# Software: InVesalius - Software de Reconstrucao 3D de Imagens Medicas
# Copyright: (C) 2001 Centro de Pesquisas Renato Archer
# Homepage: http://www.softwarepublico.gov.br
# Contact: invesalius@cti.gov.br
# License: GNU ... | tatiana/invesalius | invesalius/data/slice_data.py | Python | gpl-2.0 | 5,655 | [
"VTK"
] | def4e72fd62035b34e08bf5e22b0a774d7a0a9d063b2f8fb60bc0187ad1c08e3 |
#!/usr/bin/env python
import argparse
import shutil
import icqsol_utils
# Parse Command Line.
parser = argparse.ArgumentParser()
parser.add_argument('--input', dest='input', help='Shape dataset selected from history')
parser.add_argument('--input_file_format_and_type', dest='input_file_format_and_type', help='Input f... | pletzer/galaxy-csg | tools/icqsol_coarsen_shape/icqsol_coarsen_shape.py | Python | mit | 1,789 | [
"VTK"
] | afec9412a0f57e4141a121a284991a36bbfbd26eff0b0274c90ed34319573231 |
#!/usr/bin/env python3
# Copyright (C) 2009-2015, 2018 the PISM Authors
# @package pism_python
# \author the PISM authors
# \brief Creates "from scratch" a boring dataset with the right format
# to use as a PISM bootstrapping file.
# \details Example use of Python for this purpose.
#
# Usage, including a minimal PISM... | pism/pism | examples/preprocessing/pism_python.py | Python | gpl-3.0 | 2,829 | [
"NetCDF"
] | 5b4ee874b8fba9bde6adeede1e61a6107b0a174c9f28d7cafc8858d354be1705 |
#!/usr/bin/env python
'''
ViSAPy example script for generating benchmark corresponding to an in vivo
tetrode recording
'''
#import modules
import uuid
import urllib2
import zipfile
import numpy as np
import h5py
import os
import glob
#workaround for plots on cluster
if not os.environ.has_key('DISPLAY'):
import matp... | espenhgn/ViSAPy | examples/example_figure_02.py | Python | gpl-2.0 | 14,940 | [
"NEURON"
] | 85aa8e627816f2f23f78c6556c2739abbcae40e37d3fcf96c5735a854b387471 |
from __future__ import absolute_import
import numpy as np
class Distribution(object):
"""A base class for probability distributions.
The only thing that a probabilities distribution needs is a
``sample`` function. This base class ensures that all distributions
accept the same arguments for the sample... | ZeitgeberH/nengo | nengo/utils/distributions.py | Python | gpl-3.0 | 3,756 | [
"Gaussian"
] | 43bb71f46238ee7e92eb96418fa79baa5cdd5f6f06fd8b3ef6eca70803332723 |
from __future__ import print_function
import unittest
from os import path
from shyft import shyftdata_dir
from shyft import api
from shyft.repository.netcdf.arome_data_repository import AromeDataRepository
from shyft.repository.netcdf.arome_data_repository import AromeDataRepositoryError
class AromeDataRepositoryTes... | felixmatt/shyft | shyft/tests/test_arome_respository.py | Python | lgpl-3.0 | 13,471 | [
"NetCDF"
] | 333fb3b985ea5cc8e6e9f5e9fabd36f4ac412ccce979e34e8c0379428942dce9 |
# $HeadURL$
__RCSID__ = "$Id$"
import DIRAC
from DIRAC import gLogger, rootPath, gConfig
from DIRAC.FrameworkSystem.private.monitoring.RRDManager import RRDManager
from DIRAC.Core.Utilities.ReturnValues import S_OK, S_ERROR
from DIRAC.Core.Utilities import DEncode, List
class ServiceInterface:
__sourceToComponentId... | Sbalbp/DIRAC | FrameworkSystem/private/monitoring/ServiceInterface.py | Python | gpl-3.0 | 17,192 | [
"DIRAC"
] | 5393f4e52dfbd9e4cb99dbc0159fed1ded5503e036b2b838551b11932567c1db |
#
# Copyright (C) 2013-2019 The ESPResSo project
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later... | KaiSzuttor/espresso | testsuite/python/virtual_sites_relative.py | Python | gpl-3.0 | 14,928 | [
"ESPResSo"
] | db72e3ff972be46e9b4c966b47a68906a27d1627eddeb07557815b8fa46c05ca |
from . import _version
__version__ = _version.__version__
import os, math, pysam
from clint.textui import progress, puts_err
import sqlite3 as lite
import tempfile, warnings, pickle
def example_reads():
"""
returns the path to the example BAM file
"""
return os.path.join(os.path.join(os.path.dirname(_... | jpiper/pyDNase | pyDNase/__init__.py | Python | mit | 25,452 | [
"pysam"
] | f0d06cc168f8afd56a872b902ae64b8dfdc09e3126fbb8c11a7e5963e296b82a |
"""
Node classes (`Apply`, `Variable`) and expression graph algorithms.
To read about what theano graphs are from a user perspective, have a look at
`graph.html <../doc/graph.html>`__.
"""
from __future__ import absolute_import, print_function, division
from collections import deque
from copy import copy
from iterto... | JazzeYoung/VeryDeepAutoEncoder | theano/gof/graph.py | Python | bsd-3-clause | 44,424 | [
"VisIt"
] | 1f15bb779e0a51d47c228a27a95e6ef299982d3f95778705f4a52a6aa7780687 |
import numpy as np
import matplotlib.pyplot as plt
from scipy.optimize import curve_fit
from scipy import optimize
def gaussian(height, center_x, center_y, width_x, width_y):
"""Returns a gaussian function with the given parameters"""
width_x = float(width_x)
width_y = float(width_y)
return lambda ... | ColdMatter/EDMSuite | MoleculeMOTScripts/TweezerFuncs.py | Python | mit | 28,295 | [
"Gaussian"
] | bd4fc757a8bbb1cc8ff9af3d7659886dc1b6e45508830954a2118d38d8f79fee |
"""
vacation visitor
"""
from visitor import Visitor
class VacationVisitor(Visitor):
"""
vacation visitor
"""
def visit(self, employee):
# provide 3 extra vacation days
employee.VacationDays += 3
print("{0} {1}'s new vacation days: {2}".
format(type(employee).__n... | Sunhick/design-patterns | Behavioral/Visitor/vacation_visitor.py | Python | gpl-3.0 | 366 | [
"VisIt"
] | e2b72ea81189b38a84395b6bb982d2aa30e147813ebf423f879925588eec6cda |
try: paraview.simple
except: from paraview.simple import *
paraview.simple._DisableFirstRenderCameraReset()
ImageFlip()
| jeromevelut/Peavip | Testing/ImageFlip.py | Python | gpl-3.0 | 122 | [
"ParaView"
] | 4f9966d91672cf574a4ce0e63d9dddef547d1098d4d3c81f28605e1f4dff9082 |
#
# Copyright (c) 2016 nexB Inc. and others. All rights reserved.
# http://nexb.com and https://github.com/nexB/scancode-toolkit/
# The ScanCode software is licensed under the Apache License version 2.0.
# Data generated with ScanCode require an acknowledgment.
# ScanCode is a trademark of nexB Inc.
#
# You may not use... | yasharmaster/scancode-toolkit | tests/textcode/test_strings.py | Python | apache-2.0 | 6,067 | [
"VisIt"
] | e8ca781eecf89e73614eda83f480dd451ccb752b1bedba4c073de4b78772106e |
#!/usr/bin/env python
#encoding=utf8
#Copyright [2014] [Wei Zhang]
#Licensed under the Apache License, Version 2.0 (the "License");
#you may not use this file except in compliance with the License.
#You may obtain a copy of the License at
#http://www.apache.org/licenses/LICENSE-2.0
#Unless required by applicable law ... | anthonylife/TaobaoCompetition2014 | src/mbtalmf/train.py | Python | gpl-2.0 | 3,123 | [
"Gaussian"
] | c7f79abaab78d27cb3f6d863c4b1c65987c90a714ca96018b7859b87b0038782 |
#!/usr/bin/python
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2019 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This file is part of Psi4.
#
# Psi4 is free software; you can redistribute... | dgasmith/psi4 | doc/sphinxman/document_driver.py | Python | lgpl-3.0 | 4,549 | [
"Psi4"
] | 3dbb1d2d3a56f1ff25fe7d63b479ba3f737ef1e445d58a6be30f9d0d1417d5a3 |
# class generated by DeVIDE::createDeVIDEModuleFromVTKObject
from module_kits.vtk_kit.mixins import SimpleVTKClassModuleBase
import vtk
class vtkTextureMapToCylinder(SimpleVTKClassModuleBase):
def __init__(self, module_manager):
SimpleVTKClassModuleBase.__init__(
self, module_manager,
... | chrisidefix/devide | modules/vtk_basic/vtkTextureMapToCylinder.py | Python | bsd-3-clause | 499 | [
"VTK"
] | c669055db6b3f99280a7571d3148336cb35e39674b156d0c20cb9311c64909b1 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
import json
import random
import pytest
from marshmallow import Schema, fields, utils, MarshalResult, UnmarshalResult
from marshmallow.exceptions import MarshallingError
from marshmallow.compat import unicode, binary_type
from tests.base import * # noqa
random.seed(1... | jmcarp/marshmallow | tests/test_serializer.py | Python | mit | 35,818 | [
"Brian"
] | 8df965b52aa75eb200ba5d049b28230654a5616daab839c3ae0cc7c0cf26f204 |
# -*- coding: utf-8 -*-
# Copyright 2019 The GraphicsFuzz Project Authors
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# https://www.apache.org/licenses/LICENSE-2.0
#
# Unless requi... | google/graphicsfuzz | gfauto/gfautotests/test_signature_util.py | Python | apache-2.0 | 18,535 | [
"Amber"
] | 3055bb20d0c45f7cbc57c33f28fbd50bbe5c43f917bc415b43898b1dfa9107e5 |
#!/usr/local/bin/env python
"""
Test repex.py facility.
TODO
* Create a few simulation objects on simple systems (e.g. harmonic oscillators?) and run multiple tests on each object?
"""
# =============================================================================================
# GLOBAL IMPORTS
# ===============... | pgrinaway/yank | Yank/tests/test_repex.py | Python | lgpl-3.0 | 16,898 | [
"OpenMM"
] | d4bc552d7597a8afea612588c6326c9475d6fe53b9639e92f10cacad49a8471c |
'''
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be... | sanctuaryaddon/sanctuary | plugin.video.quantum/lib/Football_Repeat.py | Python | gpl-2.0 | 22,571 | [
"CRYSTAL"
] | bb50cbd39e1f810064db226ad4222ec86e92cce3b042549aec94f26b03eb7dc3 |
from flask import Flask
app = Flask(__name__)
@app.route('/')
def hello_world():
return 'Hello World!'
@app.route('/DIRAC/')
def index():
return 'keep calm...'
if __name__ == '__main__':
#app.run(debug=True)
app.run()
| SuperDIRAC/TESTDIRAC | WebServerSystem/tmpdir/simpleFlask.py | Python | gpl-3.0 | 237 | [
"DIRAC"
] | 79bccfac69029546dd2cf9832fe7cfef77c38290ac2c265f6293a5acef339c73 |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2021 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This file is part of Psi4.
#
# Psi4 is free software; you can redistribute it and/or modify
#... | lothian/psi4 | psi4/driver/procrouting/wrappers_cfour.py | Python | lgpl-3.0 | 36,345 | [
"CFOUR",
"Psi4"
] | 8df49fe377758e6b5230653221bedc0714d738d5d512104a6bbaac305e9bd0dc |
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not u... | pwcberry/climate | examples/taylor_diagram_example.py | Python | apache-2.0 | 5,188 | [
"NetCDF"
] | 09c7ee19a6a6bfa87c26a5319be8a271d6c74200d4b16f5905e93bd90ef67ac1 |
#!/usr/bin/python
#
# See README.md for program description!
import sys
import os
import tempfile
import argparse
import re
import csv
import inspect
from pycparser import parse_file, c_parser, c_generator, c_ast
lst = []
class Record():
"""
A branch point in a program that will probably be annotated later.... | PERSISTLab/BatterylessSim | firmware/ekhoshim.py | Python | bsd-3-clause | 11,606 | [
"VisIt"
] | dc754d412511d88a24f9c4bcb0bdbff94b8de23da0a62bf1fc0b4bff64f917d7 |
#!/usr/bin/env python
# Copyright (c) 2012 The Chromium Authors. All rights reserved.
# Use of this source code is governed by a BSD-style license that can be
# found in the LICENSE file.
"""Makes sure files have the right permissions.
Some developers have broken SCM configurations that flip the executable
permission... | Workday/OpenFrame | tools/checkperms/checkperms.py | Python | bsd-3-clause | 13,685 | [
"Galaxy",
"xTB"
] | b14f5a608ef673682422fdf196ee9841580806b1621e5e35e8229da1a0c5ef55 |
#!/usr/bin/env python3
"""
Copyright 2020 Paul Willworth <ioscode@gmail.com>
This file is part of Galaxy Harvester.
Galaxy Harvester is free software: you can redistribute it and/or modify
it under the terms of the GNU Affero General Public License as published by
the Free Software Foundation, either version 3 ... | pwillworth/galaxyharvester | html/dbSession.py | Python | gpl-3.0 | 1,777 | [
"Galaxy"
] | 3ed068e3fc4a79136bf87a709a7c64443d5b27c1ae4ef58d8b30d8c85fe58b02 |
#!/usr/bin/env python
#
# Author: Qiming Sun <osirpt.sun@gmail.com>
#
from pyscf import gto, scf, mcscf
'''
Approximate CASSCF orbital hessian with density fitting integrals
'''
mol = gto.Mole()
mol.build(
atom = [
["C", (-0.65830719, 0.61123287, -0.00800148)],
["C", ( 0.73685281, 0.61123287, -0.008001... | gkc1000/pyscf | examples/mcscf/17-approx_orbital_hessian.py | Python | apache-2.0 | 1,088 | [
"PySCF"
] | 8171510cf1252676e215717345f9a49ba6791180af75db5a0ed9040073b3bcd4 |
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