Download scripts/FASTER/FASTER_callbacks.m from jalauer/Singh2020: direct link, hf CLI and curl.
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https://huggingface.co/datasets/jalauer/Singh2020/resolve/main/scripts/FASTER/FASTER_callbacks.m
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hf download hf://datasets/jalauer/Singh2020/scripts/FASTER/FASTER_callbacks.m
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curl -L -o FASTER_callbacks.m https://huggingface.co/datasets/jalauer/Singh2020/resolve/main/scripts/FASTER/FASTER_callbacks.m
24 kB
| function varargout=FASTER_callbacks(src,eventdata,varargin) | |
| % Copyright (C) 2010 Hugh Nolan, Robert Whelan and Richard Reilly, Trinity College Dublin, | |
| % Ireland | |
| % nolanhu@tcd.ie, robert.whelan@tcd.ie | |
| % | |
| % This program is free software; you can redistribute it and/or modify | |
| % it under the terms of the GNU General Public License as published by | |
| % the Free Software Foundation; either version 2 of the License, or | |
| % (at your option) any later version. | |
| % | |
| % This program is distributed in the hope that it will be useful, | |
| % but WITHOUT ANY WARRANTY; without even the implied warranty of | |
| % MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the | |
| % GNU General Public License for more details. | |
| % | |
| % You should have received a copy of the GNU General Public License | |
| % along with this program; if not, write to the Free Software | |
| % Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA | |
| top_nargout=nargout; | |
| if nargin < 2 | |
| %This should never happen. | |
| return; | |
| elseif nargin==2 | |
| x=get(src,'Parent'); | |
| if (x==0) | |
| uiresume(src); | |
| else | |
| uiresume(x); | |
| end | |
| elseif nargin>=3 | |
| %try | |
| % Evaluate the first argument in varargin as the function name and the rest | |
| % as the arguments to that function | |
| eval(sprintf('%s(src,eventdata,varargin{2:end});',varargin{1})); | |
| %catch ME | |
| % fprintf('Error: %s\n',ME.message); | |
| %end | |
| end | |
| function do_nothing(src,eventdata) | |
| return; | |
| end | |
| function double_click_func(varargin) | |
| fprintf('Eval''d.\n'); | |
| if (get(varargin{1},'Selected')) | |
| eval_string=[varargin{3} '(']; | |
| for i=4:nargin | |
| eval_string=[eval_string varargin{i} ',']; | |
| end | |
| if eval_string(end)==',' | |
| eval_string = [eval_string(1:end-1) ');']; | |
| end | |
| eval(eval_string); | |
| end | |
| end | |
| function fileselect(src,eventdata,tbhandle,name,handle) | |
| [file_to_do pathname] = uigetfile('*.*',name); | |
| if (file_to_do~=0) | |
| set(tbhandle,'String',[pathname file_to_do]); | |
| else | |
| return; | |
| end | |
| option_wrapper=get(handle,'UserData'); | |
| eval(sprintf('option_wrapper.options.%s = ''%s'';',get(tbhandle,'UserData'),[pathname file_to_do])); | |
| set(handle,'UserData',option_wrapper); | |
| update_controls(src,eventdata,handle); | |
| end | |
| function folderselect(src,eventdata,tbhandle,name,handle) | |
| folder_to_do = uigetdir(cd,name); | |
| if (folder_to_do~=0) | |
| set(tbhandle,'String',folder_to_do); | |
| else | |
| return; | |
| end | |
| option_wrapper=get(handle,'UserData'); | |
| eval(sprintf('option_wrapper.options.%s = ''%s'';',get(tbhandle,'UserData'),folder_to_do)); | |
| set(handle,'UserData',option_wrapper); | |
| update_controls(src,eventdata,handle); | |
| end | |
| function changelist(src,eventdata,listbox,list_strings,value) | |
| set(listbox,'String',list_strings,'Value',1); | |
| option_wrapper=get(listbox,'UserData'); | |
| option_wrapper.last_value=1; | |
| option_wrapper.current_group=value; | |
| set(listbox,'UserData',option_wrapper); | |
| end | |
| function set_window_value(src,eventdata,handle) | |
| option_wrapper=get(handle,'UserData'); | |
| current_item=get(src,'UserData'); | |
| if (strcmpi(get(src,'Style'),'edit')) | |
| string=get(src,'String'); | |
| if isempty(string) | |
| string='[]'; | |
| end | |
| if (string(1)~='[') | |
| string = [ '[' string ]; | |
| end | |
| if (string(end)~=']') | |
| string = [ string ']']; | |
| end | |
| try | |
| %r=eval(string); | |
| eval(sprintf('option_wrapper.options.%s=%s;',current_item,string)); | |
| %if iscell(r) | |
| %end | |
| %set(src,'Value',eval(string)); % Is this at all necessary except as a temporary variable? I don't think so. | |
| catch | |
| close(get(src,'Parent')); | |
| ew=errordlg('Invalid assignment.','Assignment error','modal'); | |
| set(0,'Units','pixels'); | |
| screensize = get(0,'ScreenSize'); | |
| screensize = screensize(1,[3 4]); | |
| p=get(ew,'Position'); | |
| set(ew,'Position',[(screensize(1)-p(3))/2 (screensize(2)-p(4))/2 p(3) p(4)]); | |
| return; | |
| end | |
| else | |
| eval(sprintf('option_wrapper.options.%s=get(src,''Value'');',current_item)); | |
| end | |
| set(handle,'UserData',option_wrapper); | |
| end | |
| function set_save_options(src,eventdata,number,handle) | |
| option_wrapper=get(handle,'UserData'); | |
| option_wrapper.options.save_options(number)=get(src,'Value'); | |
| set(handle,'UserData',option_wrapper); | |
| end | |
| function pop_up(src,eventdata,funchand) | |
| option_wrapper=get(src,'UserData'); | |
| x=get(src,'Value'); | |
| if (x==option_wrapper.last_value) | |
| funchand(option_wrapper.window_handles{option_wrapper.current_group}{x},src); | |
| end | |
| option_wrapper.last_value=x; | |
| set(src,'UserData',option_wrapper); | |
| end | |
| function option_window_close(src,eventdata,handle,control_handles,figure_handle) | |
| if nargin==4 | |
| figure_handle=src; | |
| end | |
| option_wrapper=get(handle,'UserData'); | |
| try | |
| for p=2:2:length(control_handles) | |
| current_item=get(control_handles(p),'UserData'); | |
| if (strcmpi(get(control_handles(p),'Style'),'edit')) | |
| string=get(control_handles(p),'String'); | |
| if isempty(string) | |
| string='[]'; | |
| end | |
| if (string(1)~='[') | |
| string = [ '[' string ]; | |
| end | |
| if (string(end)~=']') | |
| string = [ string ']']; | |
| end | |
| try | |
| eval(sprintf('option_wrapper.options.%s=%s;',current_item,string)); | |
| %set(control_handles(p),'Value',eval(string)); | |
| catch | |
| ew=errordlg('Invalid assignment.','Assignment error','modal'); | |
| set(0,'Units','pixels'); | |
| screensize = get(0,'ScreenSize'); | |
| screensize = screensize(1,[3 4]); | |
| pos=get(ew,'Position'); | |
| set(ew,'Units','Pixels','Position',[(screensize(1)-pos(3))/2 (screensize(2)-pos(4))/2 pos(3) pos(4)]); | |
| return; | |
| end | |
| else | |
| eval(sprintf('option_wrapper.options.%s=get(control_handles(p),''Value'');',current_item)); | |
| end | |
| %eval(sprintf('option_wrapper.options.%s=get(control_handles(p),''Value'');',current_item)); | |
| end | |
| catch | |
| ew2=errordlg('Something went wrong.','Error','modal'); | |
| set(0,'Units','pixels'); | |
| screensize = get(0,'ScreenSize'); | |
| screensize = screensize(1,[3 4]); | |
| p=get(ew2,'Position'); | |
| set(ew2,'Units','Pixels','Position',[(screensize(1)-p(3))/2 (screensize(2)-p(4))/2 p(3) p(4)]); | |
| delete(figure_handle); | |
| end | |
| set(handle,'UserData',option_wrapper); | |
| set(figure_handle,'WindowStyle','normal'); | |
| delete(figure_handle); | |
| end | |
| function main_window_close(src,eventdata,handle) | |
| delete(src); | |
| end | |
| function error_window(src,eventdata,string) | |
| bgcolor=[0.9 0.9 0.9]; | |
| ew=figure; | |
| set(0,'Units','pixels'); | |
| screensize = get(0,'ScreenSize'); | |
| screensize = screensize(1,[3 4]); | |
| set(ew,'Units','Pixels','Position',[(screensize(1)/2-100) (screensize(2)/2-50) 200 100],'WindowStyle','modal','Color',bgcolor); | |
| uicontrol('FontSize',12,'Style','text','String',string,'Units','Normalized','Position',[0 0.5 1 0.5],'BackgroundColor',bgcolor); | |
| uicontrol('FontSize',12,'Style','pushbutton','String','OK','Units','Normalized','Position',[0.35 0.1 0.3 0.3],'Callback',{@close_this,ew},'BackgroundColor',bgcolor); | |
| function close_this(src,eventdata,handle) | |
| set(handle,'WindowStyle','normal'); | |
| delete(handle); | |
| end | |
| end | |
| function set_onoff_options(src,eventdata,number,handle) | |
| option_wrapper=get(handle,'UserData'); | |
| option_wrapper.options{2}{number}{end}={get(src,'Value')}; | |
| set(handle,'UserData',options); | |
| end | |
| function run_FASTER(src,eventdata,handle) | |
| option_wrapper=get(handle,'UserData'); | |
| using_ALLEEG=option_wrapper.options.file_options.using_ALLEEG; | |
| if ~using_ALLEEG && (isempty(option_wrapper.options.file_options.folder_name) || ~exist(option_wrapper.options.file_options.folder_name,'dir')) | |
| errordlg('Invalid job folder selected.','Error','modal'); | |
| %assignin('base','optins',option_wrapper); | |
| return; | |
| end | |
| if (~isempty(option_wrapper.options.file_options.output_folder_name) && ~exist(option_wrapper.options.file_options.output_folder_name,'dir')) | |
| errordlg('Invalid output folder selected.','Error','modal'); | |
| return; | |
| end | |
| if (isempty(option_wrapper.options.file_options.channel_locations)) | |
| if (option_wrapper.options.file_options.is_bdf==1) | |
| errordlg('Must enter channel locations for .bdf files.','Error','modal'); | |
| return; | |
| else | |
| button = questdlg(sprintf('No channel locations entered.\nDo all .set files have channel locations?'),'Channel locations','Yes','No','Yes'); | |
| if strcmp(button,'No') | |
| return; | |
| end | |
| end | |
| end | |
| if (option_wrapper.options.ica_options.run_ica && ~isempty(setdiff(option_wrapper.options.ica_options.ica_channels,[option_wrapper.options.channel_options.eeg_chans option_wrapper.options.channel_options.ext_chans]))) | |
| errordlg('Selected ICA channels are not a subset of selected EEG and external channels.'); | |
| return; | |
| end | |
| % v=version(); | |
| % dots=strfind(v,'.'); | |
| % v_num=str2num(v(1:dots(2)-1)); | |
| % | |
| % if v_num>7.4 | |
| % FASTER(option_wrapper); | |
| % else | |
| % FASTER_compat(option_wrapper); | |
| % end | |
| % Version number check is awkward at the moment. | |
| % Using lasterror for the moment until it is removed | |
| % completely. | |
| % If none of the above checks returned, run FASTER! | |
| try | |
| FASTER(option_wrapper); | |
| catch | |
| m=lasterror; | |
| if exist('my_queue_file','var') && ~isempty(my_queue_file) && exist(my_queue_file,'file') | |
| delete(my_queue_file); | |
| end | |
| if exist('my_proc_file','var') && ~isempty(my_proc_file) && exist(my_proc_file,'file') | |
| delete(my_proc_file); | |
| end | |
| assignin('base','m',m); | |
| rethrow(m); | |
| end | |
| end | |
| function stop(src,eventdata) | |
| error('Stopped FASTER!\n'); | |
| end | |
| function new_job(src,eventdata,handle) | |
| folder_to_do = uigetdir(cd,'Open folder to process'); | |
| [root_folder f1 f2] = fileparts(folder_to_do); | |
| [pathname file_to_save] = uiputfile('*.eegjob','Save job',[folder_to_do filesep f1 f2 '.eegjob']); | |
| if (all(folder_to_do~=0) && all(file_to_save~=0)) | |
| option_wrapper.file_options.folder_name=folder_to_do; | |
| save_job([],[],handle,[pathname filesep file_to_save]); | |
| end | |
| end | |
| function open_job(src,eventdata,handle,std_options) | |
| [file_to_do pathname] = uigetfile('*.eegjob','Select EEG job to open'); | |
| option_wrapper=get(handle,'UserData'); | |
| if (file_to_do~=0) | |
| all=load([pathname filesep file_to_do],'-mat'); | |
| or2=all.option_wrapper; | |
| using_ALLEEG=option_wrapper.options.file_options.using_ALLEEG; | |
| %if exist([pathname filesep 'ProcQ.eegQ'],'file') | |
| if ~using_ALLEEG | |
| if isfield(or2.options.file_options,'folder_name_rel') && ~isempty(or2.options.file_options.folder_name_rel) | |
| try | |
| startDir = make_relative_path(or2.options.file_options.folder_name_rel,pathname); | |
| or2.options.file_options.folder_name=startDir; | |
| catch | |
| startDir=or2.options.file_options.folder_name; | |
| end | |
| else | |
| startDir=or2.options.file_options.folder_name; | |
| end | |
| else | |
| startDir=cd; | |
| end | |
| if (~using_ALLEEG && exist([startDir filesep file_to_do '_ProcQ.eegQ'],'file')) || (using_ALLEEG && exist([startDir filesep 'ProcQ.eegQ'],'file')) | |
| button = questdlg(sprintf('Queue file present.\nJoining the queue will add this computer to an already running FASTER session (cannot be used if FASTER was started from EEGLAB).\n\nOverwriting will delete the queue file and start from the beginning. Use this if an error occurred previously, or if processing was aborted before finishing the job (resume will function as normal).\n\nCancelling will abort loading this file.'),'Queue file detected','Join','Reset Queue','Cancel','Join'); | |
| if strcmp(button,'Cancel') | |
| return; | |
| elseif strcmp(button,'Reset Queue') | |
| button = questdlg(sprintf('Warning: resetting will remove the queue file and other tracking files. Please ensure no other computers are using this job file for processing.\nContinue?'),'Restart warning','Yes','No','No'); | |
| if strcmp(button,'No') | |
| return; | |
| end | |
| if ~using_ALLEEG | |
| delete([startDir filesep file_to_do '_ProcQ.eegQ']); | |
| else | |
| delete([startDir filesep 'ProcQ.eegQ']); | |
| end | |
| if exist([startDir filesep 'Queue'],'dir') | |
| D=dir([startDir filesep 'Queue']); | |
| for v=1:length(D) | |
| if ~strcmp(D(v).name,'.') && ~strcmp(D(v).name,'..') | |
| delete([startDir filesep 'Queue' filesep D(v).name]); | |
| end | |
| end | |
| rmdir([startDir filesep 'Queue']); | |
| end | |
| if exist([startDir filesep 'Processing'],'dir') | |
| D=dir([startDir filesep 'Processing']); | |
| for v=1:length(D) | |
| if ~strcmp(D(v).name,'.') && ~strcmp(D(v).name,'..') | |
| delete([startDir filesep 'Processing' filesep D(v).name]); | |
| end | |
| end | |
| rmdir([startDir filesep 'Processing']); | |
| end | |
| end | |
| end | |
| or2.options.file_options.using_ALLEEG=option_wrapper.options.file_options.using_ALLEEG; | |
| option_wrapper.options=check_options(src,eventdata,std_options,or2.options); | |
| option_wrapper.options.file_options.resume=1; | |
| option_wrapper.options.job_filename=[pathname filesep file_to_do]; | |
| end | |
| set(handle,'UserData',option_wrapper); | |
| update_controls(src,eventdata,handle); | |
| end | |
| function varargout=check_options(src,eventdata,op1,op2) | |
| names=fieldnames(op1); | |
| for v=1:length(names) | |
| if ~isfield(op2,names{v}) | |
| op2.(names{v})=op1.(names{v}); | |
| elseif isstruct(op1.(names{v})) | |
| names_2 = fieldnames(op1.(names{v})); | |
| for t=1:length(names_2) | |
| if ~isfield(op2.(names{v}),names_2{t}) | |
| op2.(names{v}).(names_2{t})=op1.(names{v}).(names_2{t}); | |
| elseif isstruct(op1.(names{v}).(names_2{t})) % Max three levels of structs | |
| names_3 = fieldnames(op1.(names{v}).(names_2{t})); | |
| for r=1:length(names_3) | |
| if ~isfield(op2.(names{v}).(names_2{t}),names_3{r}) || ~all(size(op2.(names{v}).(names_2{t}).(names_3{r}))==size(op1.(names{v}).(names_2{t}).(names_3{r}))) | |
| op2.(names{v}).(names_2{t}).(names_3{r})=op1.(names{v}).(names_2{t}).(names_3{r}); | |
| end | |
| end | |
| end | |
| end | |
| end | |
| end | |
| if nargout==1 | |
| varargout{1}=op2; | |
| end | |
| end | |
| function update_value(src,eventdata,handle) | |
| option_wrapper=get(handle,'UserData'); | |
| if (strcmp(get(src,'Style'),'edit')) | |
| eval(sprintf('option_wrapper.options.%s = ''%s'';',get(src,'UserData'),get(src,'String'))); | |
| else | |
| eval(sprintf('option_wrapper.options.%s = %f;',get(src,'UserData'),get(src,'Value'))); | |
| end | |
| set(handle,'UserData',option_wrapper); | |
| update_controls(src,eventdata,handle); | |
| end | |
| function save_job(src,eventdata,handle,full_filename) | |
| option_wrapper=get(handle,'UserData'); | |
| tmp_using=option_wrapper.options.file_options.using_ALLEEG; | |
| option_wrapper.options.file_options.using_ALLEEG=0; | |
| if nargin==3 | |
| if isempty(option_wrapper.options.job_filename) || ~exist(option_wrapper.options.job_filename,'file') | |
| if isempty(option_wrapper.options.file_options.folder_name) | |
| [pathname file_to_save] = uiputfile('*.eegjob','Save job'); | |
| else | |
| [root_folder f1 f2] = fileparts(option_wrapper.options.file_options.folder_name); | |
| [pathname file_to_save] = uiputfile('*.eegjob','Save job',[option_wrapper.options.file_options.folder_name filesep option_wrapper.options.file_options.file_prefix f1 f2 '.eegjob']); | |
| end | |
| if (file_to_save==0) | |
| return; | |
| end | |
| full_filename=[file_to_save filesep pathname]; | |
| else | |
| full_filename=option_wrapper.options.job_filename; | |
| end | |
| end | |
| if ~isempty(option_wrapper.options.file_options.folder_name) | |
| if exist('file_to_save','var') | |
| option_wrapper.options.file_options.folder_name_rel=find_relative_path(option_wrapper.options.file_options.folder_name,file_to_save); | |
| else | |
| option_wrapper.options.file_options.folder_name_rel=find_relative_path(option_wrapper.options.file_options.folder_name,fileparts(option_wrapper.options.job_filename)); | |
| end | |
| else | |
| option_wrapper.options.file_options.folder_name_rel=cell(0); | |
| end | |
| save(full_filename,'option_wrapper','-mat'); | |
| option_wrapper.options.job_filename=full_filename; | |
| option_wrapper.options.file_options.using_ALLEEG=tmp_using; | |
| set(handle,'UserData',option_wrapper); | |
| end | |
| function save_new_job(src,eventdata,handle) | |
| option_wrapper=get(handle,'UserData'); | |
| tmp_using=option_wrapper.options.file_options.using_ALLEEG; | |
| option_wrapper.options.file_options.using_ALLEEG=0; | |
| if isempty(option_wrapper.options.file_options.folder_name) | |
| [pathname file_to_save] = uiputfile('*.eegjob','Save job'); | |
| else | |
| [root_folder f1 f2] = fileparts(option_wrapper.options.file_options.folder_name); | |
| [pathname file_to_save] = uiputfile('*.eegjob','Save job',[option_wrapper.options.file_options.folder_name filesep option_wrapper.options.file_options.file_prefix f1 f2 '.eegjob']); | |
| end | |
| if (file_to_save==0) | |
| return; | |
| end | |
| full_filename=[file_to_save filesep pathname]; | |
| if exist('file_to_save','var') | |
| option_wrapper.options.file_options.folder_name_rel=find_relative_path(option_wrapper.options.file_options.folder_name,file_to_save); | |
| else | |
| option_wrapper.options.file_options.folder_name_rel=find_relative_path(option_wrapper.options.file_options.folder_name,root_folder); | |
| end | |
| save(full_filename,'option_wrapper','-mat'); | |
| option_wrapper.options.job_filename=full_filename; | |
| option_wrapper.options.file_options.using_ALLEEG=tmp_using; | |
| set(handle,'UserData',option_wrapper); | |
| end | |
| function get_defaults(src,eventdata,handle,using_ALLEEG) | |
| option_wrapper=get(handle,'UserData'); | |
| filename=which('FASTER_defaults.mat'); | |
| if ~isempty(filename) | |
| x=load(filename,'-mat'); | |
| option_wrapper_def=x.option_wrapper; | |
| option_wrapper_def.options.job_filename=[]; | |
| option_wrapper_def.options.current_file=[]; | |
| option_wrapper_def.options.current_file_num=1; | |
| %option_wrapper.options.file_options.using_ALLEEG=0; | |
| end | |
| option_wrapper_def.options.file_options.using_ALLEEG=using_ALLEEG; | |
| if (top_nargout>0) | |
| vout{1}=option_wrapper_def.options; | |
| else | |
| option_wrapper.options=option_wrapper_def.options; | |
| set(handle,'UserData',option_wrapper); | |
| update_controls(src,eventdata,handle); | |
| end | |
| end | |
| function update_controls(src,eventdata,handle) | |
| option_wrapper=get(handle,'UserData'); | |
| for c=1:length(option_wrapper.save_handles) | |
| set(option_wrapper.save_handles(c),'Value',option_wrapper.options.save_options(c)); | |
| end | |
| % File options etc | |
| for c=1:length(option_wrapper.other_handles) | |
| if (strcmp(get(option_wrapper.other_handles(c),'Style'),'edit') || strcmp(get(option_wrapper.other_handles(c),'Style'),'text')) | |
| set(option_wrapper.other_handles(c),'String',eval(['option_wrapper.options.' get(option_wrapper.other_handles(c),'UserData')])); | |
| elseif strcmp(get(option_wrapper.other_handles(c),'Style'),'pushbutton') | |
| else | |
| if (strcmp(get(option_wrapper.other_handles(c),'UserData'),'file_options.save_ALLEEG')) | |
| if ~isempty(option_wrapper.options.file_options.output_folder_name) | |
| option_wrapper.options.file_options.save_ALLEEG=1; | |
| set(option_wrapper.other_handles(c),'Enable','off'); | |
| else | |
| set(option_wrapper.other_handles(c),'Enable','on'); | |
| end | |
| end | |
| set(option_wrapper.other_handles(c),'Value',eval(['option_wrapper.options.' get(option_wrapper.other_handles(c),'UserData')])); | |
| end | |
| end | |
| end | |
| function save_defaults(src,eventdata,handle) | |
| option_wrapper=get(handle,'UserData'); | |
| option_wrapper.job_filename=[]; | |
| option_wrapper.options.using_ALLEEG=0; | |
| if ~isempty(which('FASTER_defaults.mat')) | |
| save(which('FASTER_defaults.mat'),'option_wrapper','-mat'); | |
| else | |
| [root_folder] = fileparts(which('FASTER_callbacks.m')); | |
| save([root_folder filesep 'FASTER_defaults.mat'],'option_wrapper','-mat'); | |
| end | |
| end | |
| if top_nargout>0 | |
| if (~exist('vout','var')) | |
| for u=1:top_nargout | |
| vout{u}=[]; | |
| end | |
| end | |
| varargout=vout; | |
| end | |
| end | |