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- .gitattributes +2 -0
- code/LaDi-RL-old-qwen-cod/LaDi-RL-old-qwen-cod/venv/lib64/python3.10/site-packages/networkx-3.4.2.dist-info/INSTALLER +1 -0
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.gitattributes
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code/LaDi-RL-old-qwen-cod/LaDi-RL-old-qwen-cod/venv/lib64/python3.10/site-packages/google/_upb/_message.abi3.so filter=lfs diff=lfs merge=lfs -text
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code/LaDi-RL-old-qwen-cod/LaDi-RL-old-qwen-cod/venv/lib64/python3.10/site-packages/hf_xet/hf_xet.abi3.so filter=lfs diff=lfs merge=lfs -text
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code/LaDi-RL-old-qwen-cod/LaDi-RL-old-qwen-cod/venv/lib64/python3.10/site-packages/multidict/_multidict.cpython-310-x86_64-linux-gnu.so filter=lfs diff=lfs merge=lfs -text
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code/LaDi-RL-old-qwen-cod/LaDi-RL-old-qwen-cod/venv/lib64/python3.10/site-packages/multidict/_multidict.cpython-310-x86_64-linux-gnu.so filter=lfs diff=lfs merge=lfs -text
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code/LaDi-RL-old-qwen-cod/LaDi-RL-old-qwen-cod/venv/lib64/python3.10/site-packages/numpy/fft/_pocketfft_umath.cpython-310-x86_64-linux-gnu.so filter=lfs diff=lfs merge=lfs -text
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code/LaDi-RL-old-qwen-cod/LaDi-RL-old-qwen-cod/venv/lib64/python3.10/site-packages/numpy/linalg/_umath_linalg.cpython-310-x86_64-linux-gnu.so filter=lfs diff=lfs merge=lfs -text
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code/LaDi-RL-old-qwen-cod/LaDi-RL-old-qwen-cod/venv/lib64/python3.10/site-packages/networkx-3.4.2.dist-info/INSTALLER
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code/LaDi-RL-old-qwen-cod/LaDi-RL-old-qwen-cod/venv/lib64/python3.10/site-packages/networkx-3.4.2.dist-info/LICENSE.txt
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NetworkX is distributed with the 3-clause BSD license.
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::
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Copyright (C) 2004-2024, NetworkX Developers
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Aric Hagberg <hagberg@lanl.gov>
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Dan Schult <dschult@colgate.edu>
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Pieter Swart <swart@lanl.gov>
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All rights reserved.
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Redistribution and use in source and binary forms, with or without
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modification, are permitted provided that the following conditions are
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met:
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* Redistributions of source code must retain the above copyright
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notice, this list of conditions and the following disclaimer.
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* Redistributions in binary form must reproduce the above
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copyright notice, this list of conditions and the following
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disclaimer in the documentation and/or other materials provided
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with the distribution.
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* Neither the name of the NetworkX Developers nor the names of its
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contributors may be used to endorse or promote products derived
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from this software without specific prior written permission.
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THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
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"AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
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LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
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A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
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OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
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SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
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LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
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DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
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THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
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(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
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OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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code/LaDi-RL-old-qwen-cod/LaDi-RL-old-qwen-cod/venv/lib64/python3.10/site-packages/networkx-3.4.2.dist-info/METADATA
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Metadata-Version: 2.1
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Name: networkx
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Version: 3.4.2
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Summary: Python package for creating and manipulating graphs and networks
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Author-email: Aric Hagberg <hagberg@lanl.gov>
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Maintainer-email: NetworkX Developers <networkx-discuss@googlegroups.com>
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Project-URL: Homepage, https://networkx.org/
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Project-URL: Bug Tracker, https://github.com/networkx/networkx/issues
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Project-URL: Documentation, https://networkx.org/documentation/stable/
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Project-URL: Source Code, https://github.com/networkx/networkx
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Keywords: Networks,Graph Theory,Mathematics,network,graph,discrete mathematics,math
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Platform: Linux
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Platform: Mac OSX
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Platform: Windows
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Platform: Unix
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Classifier: Development Status :: 5 - Production/Stable
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Classifier: Intended Audience :: Developers
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Classifier: Intended Audience :: Science/Research
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Classifier: License :: OSI Approved :: BSD License
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Classifier: Operating System :: OS Independent
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Classifier: Programming Language :: Python :: 3
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Classifier: Programming Language :: Python :: 3.10
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Classifier: Programming Language :: Python :: 3.11
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Classifier: Programming Language :: Python :: 3.12
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| 25 |
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Classifier: Programming Language :: Python :: 3.13
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| 26 |
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Classifier: Programming Language :: Python :: 3 :: Only
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| 27 |
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Classifier: Topic :: Software Development :: Libraries :: Python Modules
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| 28 |
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Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
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Classifier: Topic :: Scientific/Engineering :: Information Analysis
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Classifier: Topic :: Scientific/Engineering :: Mathematics
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Classifier: Topic :: Scientific/Engineering :: Physics
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Requires-Python: >=3.10
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Description-Content-Type: text/x-rst
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License-File: LICENSE.txt
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Provides-Extra: default
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Requires-Dist: numpy >=1.24 ; extra == 'default'
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Requires-Dist: scipy !=1.11.0,!=1.11.1,>=1.10 ; extra == 'default'
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Requires-Dist: matplotlib >=3.7 ; extra == 'default'
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Requires-Dist: pandas >=2.0 ; extra == 'default'
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Requires-Dist: rtoml ; extra == 'developer'
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Provides-Extra: doc
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Requires-Dist: sphinx >=7.3 ; extra == 'doc'
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Requires-Dist: sphinx-gallery >=0.16 ; extra == 'doc'
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Requires-Dist: numpydoc >=1.8.0 ; extra == 'doc'
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Requires-Dist: pillow >=9.4 ; extra == 'doc'
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Requires-Dist: texext >=0.6.7 ; extra == 'doc'
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| 52 |
+
Requires-Dist: myst-nb >=1.1 ; extra == 'doc'
|
| 53 |
+
Requires-Dist: intersphinx-registry ; extra == 'doc'
|
| 54 |
+
Provides-Extra: example
|
| 55 |
+
Requires-Dist: osmnx >=1.9 ; extra == 'example'
|
| 56 |
+
Requires-Dist: momepy >=0.7.2 ; extra == 'example'
|
| 57 |
+
Requires-Dist: contextily >=1.6 ; extra == 'example'
|
| 58 |
+
Requires-Dist: seaborn >=0.13 ; extra == 'example'
|
| 59 |
+
Requires-Dist: cairocffi >=1.7 ; extra == 'example'
|
| 60 |
+
Requires-Dist: igraph >=0.11 ; extra == 'example'
|
| 61 |
+
Requires-Dist: scikit-learn >=1.5 ; extra == 'example'
|
| 62 |
+
Provides-Extra: extra
|
| 63 |
+
Requires-Dist: lxml >=4.6 ; extra == 'extra'
|
| 64 |
+
Requires-Dist: pygraphviz >=1.14 ; extra == 'extra'
|
| 65 |
+
Requires-Dist: pydot >=3.0.1 ; extra == 'extra'
|
| 66 |
+
Requires-Dist: sympy >=1.10 ; extra == 'extra'
|
| 67 |
+
Provides-Extra: test
|
| 68 |
+
Requires-Dist: pytest >=7.2 ; extra == 'test'
|
| 69 |
+
Requires-Dist: pytest-cov >=4.0 ; extra == 'test'
|
| 70 |
+
|
| 71 |
+
NetworkX
|
| 72 |
+
========
|
| 73 |
+
|
| 74 |
+
|
| 75 |
+
.. image::
|
| 76 |
+
https://github.com/networkx/networkx/workflows/test/badge.svg?branch=main
|
| 77 |
+
:target: https://github.com/networkx/networkx/actions?query=workflow%3Atest
|
| 78 |
+
|
| 79 |
+
.. image::
|
| 80 |
+
https://codecov.io/gh/networkx/networkx/branch/main/graph/badge.svg?
|
| 81 |
+
:target: https://app.codecov.io/gh/networkx/networkx/branch/main
|
| 82 |
+
|
| 83 |
+
.. image::
|
| 84 |
+
https://img.shields.io/pypi/v/networkx.svg?
|
| 85 |
+
:target: https://pypi.python.org/pypi/networkx
|
| 86 |
+
|
| 87 |
+
.. image::
|
| 88 |
+
https://img.shields.io/pypi/l/networkx.svg?
|
| 89 |
+
:target: https://github.com/networkx/networkx/blob/main/LICENSE.txt
|
| 90 |
+
|
| 91 |
+
.. image::
|
| 92 |
+
https://img.shields.io/pypi/pyversions/networkx.svg?
|
| 93 |
+
:target: https://pypi.python.org/pypi/networkx
|
| 94 |
+
|
| 95 |
+
.. image::
|
| 96 |
+
https://img.shields.io/github/labels/networkx/networkx/good%20first%20issue?color=green&label=contribute
|
| 97 |
+
:target: https://github.com/networkx/networkx/contribute
|
| 98 |
+
|
| 99 |
+
|
| 100 |
+
NetworkX is a Python package for the creation, manipulation,
|
| 101 |
+
and study of the structure, dynamics, and functions
|
| 102 |
+
of complex networks.
|
| 103 |
+
|
| 104 |
+
- **Website (including documentation):** https://networkx.org
|
| 105 |
+
- **Mailing list:** https://groups.google.com/forum/#!forum/networkx-discuss
|
| 106 |
+
- **Source:** https://github.com/networkx/networkx
|
| 107 |
+
- **Bug reports:** https://github.com/networkx/networkx/issues
|
| 108 |
+
- **Report a security vulnerability:** https://tidelift.com/security
|
| 109 |
+
- **Tutorial:** https://networkx.org/documentation/latest/tutorial.html
|
| 110 |
+
- **GitHub Discussions:** https://github.com/networkx/networkx/discussions
|
| 111 |
+
- **Discord (Scientific Python) invite link:** https://discord.com/invite/vur45CbwMz
|
| 112 |
+
- **NetworkX meetings calendar (open to all):** https://scientific-python.org/calendars/networkx.ics
|
| 113 |
+
|
| 114 |
+
Simple example
|
| 115 |
+
--------------
|
| 116 |
+
|
| 117 |
+
Find the shortest path between two nodes in an undirected graph:
|
| 118 |
+
|
| 119 |
+
.. code:: pycon
|
| 120 |
+
|
| 121 |
+
>>> import networkx as nx
|
| 122 |
+
>>> G = nx.Graph()
|
| 123 |
+
>>> G.add_edge("A", "B", weight=4)
|
| 124 |
+
>>> G.add_edge("B", "D", weight=2)
|
| 125 |
+
>>> G.add_edge("A", "C", weight=3)
|
| 126 |
+
>>> G.add_edge("C", "D", weight=4)
|
| 127 |
+
>>> nx.shortest_path(G, "A", "D", weight="weight")
|
| 128 |
+
['A', 'B', 'D']
|
| 129 |
+
|
| 130 |
+
Install
|
| 131 |
+
-------
|
| 132 |
+
|
| 133 |
+
Install the latest released version of NetworkX:
|
| 134 |
+
|
| 135 |
+
.. code:: shell
|
| 136 |
+
|
| 137 |
+
$ pip install networkx
|
| 138 |
+
|
| 139 |
+
Install with all optional dependencies:
|
| 140 |
+
|
| 141 |
+
.. code:: shell
|
| 142 |
+
|
| 143 |
+
$ pip install networkx[default]
|
| 144 |
+
|
| 145 |
+
For additional details,
|
| 146 |
+
please see the `installation guide <https://networkx.org/documentation/stable/install.html>`_.
|
| 147 |
+
|
| 148 |
+
Bugs
|
| 149 |
+
----
|
| 150 |
+
|
| 151 |
+
Please report any bugs that you find `here <https://github.com/networkx/networkx/issues>`_.
|
| 152 |
+
Or, even better, fork the repository on `GitHub <https://github.com/networkx/networkx>`_
|
| 153 |
+
and create a pull request (PR). We welcome all changes, big or small, and we
|
| 154 |
+
will help you make the PR if you are new to `git` (just ask on the issue and/or
|
| 155 |
+
see the `contributor guide <https://networkx.org/documentation/latest/developer/contribute.html>`_).
|
| 156 |
+
|
| 157 |
+
License
|
| 158 |
+
-------
|
| 159 |
+
|
| 160 |
+
Released under the `3-Clause BSD license <https://github.com/networkx/networkx/blob/main/LICENSE.txt>`_::
|
| 161 |
+
|
| 162 |
+
Copyright (C) 2004-2024 NetworkX Developers
|
| 163 |
+
Aric Hagberg <hagberg@lanl.gov>
|
| 164 |
+
Dan Schult <dschult@colgate.edu>
|
| 165 |
+
Pieter Swart <swart@lanl.gov>
|
code/LaDi-RL-old-qwen-cod/LaDi-RL-old-qwen-cod/venv/lib64/python3.10/site-packages/networkx-3.4.2.dist-info/RECORD
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
code/LaDi-RL-old-qwen-cod/LaDi-RL-old-qwen-cod/venv/lib64/python3.10/site-packages/networkx-3.4.2.dist-info/WHEEL
ADDED
|
@@ -0,0 +1,5 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
Wheel-Version: 1.0
|
| 2 |
+
Generator: setuptools (75.2.0)
|
| 3 |
+
Root-Is-Purelib: true
|
| 4 |
+
Tag: py3-none-any
|
| 5 |
+
|
code/LaDi-RL-old-qwen-cod/LaDi-RL-old-qwen-cod/venv/lib64/python3.10/site-packages/networkx-3.4.2.dist-info/entry_points.txt
ADDED
|
@@ -0,0 +1,2 @@
|
|
|
|
|
|
|
|
|
|
| 1 |
+
[networkx.backends]
|
| 2 |
+
nx_loopback = networkx.classes.tests.dispatch_interface:backend_interface
|
code/LaDi-RL-old-qwen-cod/LaDi-RL-old-qwen-cod/venv/lib64/python3.10/site-packages/networkx-3.4.2.dist-info/top_level.txt
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
networkx
|
code/LaDi-RL-old-qwen-cod/LaDi-RL-old-qwen-cod/venv/lib64/python3.10/site-packages/networkx/algorithms/operators/tests/__init__.py
ADDED
|
File without changes
|
code/LaDi-RL-old-qwen-cod/LaDi-RL-old-qwen-cod/venv/lib64/python3.10/site-packages/networkx/algorithms/operators/tests/test_all.py
ADDED
|
@@ -0,0 +1,328 @@
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
import pytest
|
| 2 |
+
|
| 3 |
+
import networkx as nx
|
| 4 |
+
from networkx.utils import edges_equal
|
| 5 |
+
|
| 6 |
+
|
| 7 |
+
def test_union_all_attributes():
|
| 8 |
+
g = nx.Graph()
|
| 9 |
+
g.add_node(0, x=4)
|
| 10 |
+
g.add_node(1, x=5)
|
| 11 |
+
g.add_edge(0, 1, size=5)
|
| 12 |
+
g.graph["name"] = "g"
|
| 13 |
+
|
| 14 |
+
h = g.copy()
|
| 15 |
+
h.graph["name"] = "h"
|
| 16 |
+
h.graph["attr"] = "attr"
|
| 17 |
+
h.nodes[0]["x"] = 7
|
| 18 |
+
|
| 19 |
+
j = g.copy()
|
| 20 |
+
j.graph["name"] = "j"
|
| 21 |
+
j.graph["attr"] = "attr"
|
| 22 |
+
j.nodes[0]["x"] = 7
|
| 23 |
+
|
| 24 |
+
ghj = nx.union_all([g, h, j], rename=("g", "h", "j"))
|
| 25 |
+
assert set(ghj.nodes()) == {"h0", "h1", "g0", "g1", "j0", "j1"}
|
| 26 |
+
for n in ghj:
|
| 27 |
+
graph, node = n
|
| 28 |
+
assert ghj.nodes[n] == eval(graph).nodes[int(node)]
|
| 29 |
+
|
| 30 |
+
assert ghj.graph["attr"] == "attr"
|
| 31 |
+
assert ghj.graph["name"] == "j" # j graph attributes take precedent
|
| 32 |
+
|
| 33 |
+
|
| 34 |
+
def test_intersection_all():
|
| 35 |
+
G = nx.Graph()
|
| 36 |
+
H = nx.Graph()
|
| 37 |
+
R = nx.Graph(awesome=True)
|
| 38 |
+
G.add_nodes_from([1, 2, 3, 4])
|
| 39 |
+
G.add_edge(1, 2)
|
| 40 |
+
G.add_edge(2, 3)
|
| 41 |
+
H.add_nodes_from([1, 2, 3, 4])
|
| 42 |
+
H.add_edge(2, 3)
|
| 43 |
+
H.add_edge(3, 4)
|
| 44 |
+
R.add_nodes_from([1, 2, 3, 4])
|
| 45 |
+
R.add_edge(2, 3)
|
| 46 |
+
R.add_edge(4, 1)
|
| 47 |
+
I = nx.intersection_all([G, H, R])
|
| 48 |
+
assert set(I.nodes()) == {1, 2, 3, 4}
|
| 49 |
+
assert sorted(I.edges()) == [(2, 3)]
|
| 50 |
+
assert I.graph == {}
|
| 51 |
+
|
| 52 |
+
|
| 53 |
+
def test_intersection_all_different_node_sets():
|
| 54 |
+
G = nx.Graph()
|
| 55 |
+
H = nx.Graph()
|
| 56 |
+
R = nx.Graph()
|
| 57 |
+
G.add_nodes_from([1, 2, 3, 4, 6, 7])
|
| 58 |
+
G.add_edge(1, 2)
|
| 59 |
+
G.add_edge(2, 3)
|
| 60 |
+
G.add_edge(6, 7)
|
| 61 |
+
H.add_nodes_from([1, 2, 3, 4])
|
| 62 |
+
H.add_edge(2, 3)
|
| 63 |
+
H.add_edge(3, 4)
|
| 64 |
+
R.add_nodes_from([1, 2, 3, 4, 8, 9])
|
| 65 |
+
R.add_edge(2, 3)
|
| 66 |
+
R.add_edge(4, 1)
|
| 67 |
+
R.add_edge(8, 9)
|
| 68 |
+
I = nx.intersection_all([G, H, R])
|
| 69 |
+
assert set(I.nodes()) == {1, 2, 3, 4}
|
| 70 |
+
assert sorted(I.edges()) == [(2, 3)]
|
| 71 |
+
|
| 72 |
+
|
| 73 |
+
def test_intersection_all_attributes():
|
| 74 |
+
g = nx.Graph()
|
| 75 |
+
g.add_node(0, x=4)
|
| 76 |
+
g.add_node(1, x=5)
|
| 77 |
+
g.add_edge(0, 1, size=5)
|
| 78 |
+
g.graph["name"] = "g"
|
| 79 |
+
|
| 80 |
+
h = g.copy()
|
| 81 |
+
h.graph["name"] = "h"
|
| 82 |
+
h.graph["attr"] = "attr"
|
| 83 |
+
h.nodes[0]["x"] = 7
|
| 84 |
+
|
| 85 |
+
gh = nx.intersection_all([g, h])
|
| 86 |
+
assert set(gh.nodes()) == set(g.nodes())
|
| 87 |
+
assert set(gh.nodes()) == set(h.nodes())
|
| 88 |
+
assert sorted(gh.edges()) == sorted(g.edges())
|
| 89 |
+
|
| 90 |
+
|
| 91 |
+
def test_intersection_all_attributes_different_node_sets():
|
| 92 |
+
g = nx.Graph()
|
| 93 |
+
g.add_node(0, x=4)
|
| 94 |
+
g.add_node(1, x=5)
|
| 95 |
+
g.add_edge(0, 1, size=5)
|
| 96 |
+
g.graph["name"] = "g"
|
| 97 |
+
|
| 98 |
+
h = g.copy()
|
| 99 |
+
g.add_node(2)
|
| 100 |
+
h.graph["name"] = "h"
|
| 101 |
+
h.graph["attr"] = "attr"
|
| 102 |
+
h.nodes[0]["x"] = 7
|
| 103 |
+
|
| 104 |
+
gh = nx.intersection_all([g, h])
|
| 105 |
+
assert set(gh.nodes()) == set(h.nodes())
|
| 106 |
+
assert sorted(gh.edges()) == sorted(g.edges())
|
| 107 |
+
|
| 108 |
+
|
| 109 |
+
def test_intersection_all_multigraph_attributes():
|
| 110 |
+
g = nx.MultiGraph()
|
| 111 |
+
g.add_edge(0, 1, key=0)
|
| 112 |
+
g.add_edge(0, 1, key=1)
|
| 113 |
+
g.add_edge(0, 1, key=2)
|
| 114 |
+
h = nx.MultiGraph()
|
| 115 |
+
h.add_edge(0, 1, key=0)
|
| 116 |
+
h.add_edge(0, 1, key=3)
|
| 117 |
+
gh = nx.intersection_all([g, h])
|
| 118 |
+
assert set(gh.nodes()) == set(g.nodes())
|
| 119 |
+
assert set(gh.nodes()) == set(h.nodes())
|
| 120 |
+
assert sorted(gh.edges()) == [(0, 1)]
|
| 121 |
+
assert sorted(gh.edges(keys=True)) == [(0, 1, 0)]
|
| 122 |
+
|
| 123 |
+
|
| 124 |
+
def test_intersection_all_multigraph_attributes_different_node_sets():
|
| 125 |
+
g = nx.MultiGraph()
|
| 126 |
+
g.add_edge(0, 1, key=0)
|
| 127 |
+
g.add_edge(0, 1, key=1)
|
| 128 |
+
g.add_edge(0, 1, key=2)
|
| 129 |
+
g.add_edge(1, 2, key=1)
|
| 130 |
+
g.add_edge(1, 2, key=2)
|
| 131 |
+
h = nx.MultiGraph()
|
| 132 |
+
h.add_edge(0, 1, key=0)
|
| 133 |
+
h.add_edge(0, 1, key=2)
|
| 134 |
+
h.add_edge(0, 1, key=3)
|
| 135 |
+
gh = nx.intersection_all([g, h])
|
| 136 |
+
assert set(gh.nodes()) == set(h.nodes())
|
| 137 |
+
assert sorted(gh.edges()) == [(0, 1), (0, 1)]
|
| 138 |
+
assert sorted(gh.edges(keys=True)) == [(0, 1, 0), (0, 1, 2)]
|
| 139 |
+
|
| 140 |
+
|
| 141 |
+
def test_intersection_all_digraph():
|
| 142 |
+
g = nx.DiGraph()
|
| 143 |
+
g.add_edges_from([(1, 2), (2, 3)])
|
| 144 |
+
h = nx.DiGraph()
|
| 145 |
+
h.add_edges_from([(2, 1), (2, 3)])
|
| 146 |
+
gh = nx.intersection_all([g, h])
|
| 147 |
+
assert sorted(gh.edges()) == [(2, 3)]
|
| 148 |
+
|
| 149 |
+
|
| 150 |
+
def test_union_all_and_compose_all():
|
| 151 |
+
K3 = nx.complete_graph(3)
|
| 152 |
+
P3 = nx.path_graph(3)
|
| 153 |
+
|
| 154 |
+
G1 = nx.DiGraph()
|
| 155 |
+
G1.add_edge("A", "B")
|
| 156 |
+
G1.add_edge("A", "C")
|
| 157 |
+
G1.add_edge("A", "D")
|
| 158 |
+
G2 = nx.DiGraph()
|
| 159 |
+
G2.add_edge("1", "2")
|
| 160 |
+
G2.add_edge("1", "3")
|
| 161 |
+
G2.add_edge("1", "4")
|
| 162 |
+
|
| 163 |
+
G = nx.union_all([G1, G2])
|
| 164 |
+
H = nx.compose_all([G1, G2])
|
| 165 |
+
assert edges_equal(G.edges(), H.edges())
|
| 166 |
+
assert not G.has_edge("A", "1")
|
| 167 |
+
pytest.raises(nx.NetworkXError, nx.union, K3, P3)
|
| 168 |
+
H1 = nx.union_all([H, G1], rename=("H", "G1"))
|
| 169 |
+
assert sorted(H1.nodes()) == [
|
| 170 |
+
"G1A",
|
| 171 |
+
"G1B",
|
| 172 |
+
"G1C",
|
| 173 |
+
"G1D",
|
| 174 |
+
"H1",
|
| 175 |
+
"H2",
|
| 176 |
+
"H3",
|
| 177 |
+
"H4",
|
| 178 |
+
"HA",
|
| 179 |
+
"HB",
|
| 180 |
+
"HC",
|
| 181 |
+
"HD",
|
| 182 |
+
]
|
| 183 |
+
|
| 184 |
+
H2 = nx.union_all([H, G2], rename=("H", ""))
|
| 185 |
+
assert sorted(H2.nodes()) == [
|
| 186 |
+
"1",
|
| 187 |
+
"2",
|
| 188 |
+
"3",
|
| 189 |
+
"4",
|
| 190 |
+
"H1",
|
| 191 |
+
"H2",
|
| 192 |
+
"H3",
|
| 193 |
+
"H4",
|
| 194 |
+
"HA",
|
| 195 |
+
"HB",
|
| 196 |
+
"HC",
|
| 197 |
+
"HD",
|
| 198 |
+
]
|
| 199 |
+
|
| 200 |
+
assert not H1.has_edge("NB", "NA")
|
| 201 |
+
|
| 202 |
+
G = nx.compose_all([G, G])
|
| 203 |
+
assert edges_equal(G.edges(), H.edges())
|
| 204 |
+
|
| 205 |
+
G2 = nx.union_all([G2, G2], rename=("", "copy"))
|
| 206 |
+
assert sorted(G2.nodes()) == [
|
| 207 |
+
"1",
|
| 208 |
+
"2",
|
| 209 |
+
"3",
|
| 210 |
+
"4",
|
| 211 |
+
"copy1",
|
| 212 |
+
"copy2",
|
| 213 |
+
"copy3",
|
| 214 |
+
"copy4",
|
| 215 |
+
]
|
| 216 |
+
|
| 217 |
+
assert sorted(G2.neighbors("copy4")) == []
|
| 218 |
+
assert sorted(G2.neighbors("copy1")) == ["copy2", "copy3", "copy4"]
|
| 219 |
+
assert len(G) == 8
|
| 220 |
+
assert nx.number_of_edges(G) == 6
|
| 221 |
+
|
| 222 |
+
E = nx.disjoint_union_all([G, G])
|
| 223 |
+
assert len(E) == 16
|
| 224 |
+
assert nx.number_of_edges(E) == 12
|
| 225 |
+
|
| 226 |
+
E = nx.disjoint_union_all([G1, G2])
|
| 227 |
+
assert sorted(E.nodes()) == [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11]
|
| 228 |
+
|
| 229 |
+
G1 = nx.DiGraph()
|
| 230 |
+
G1.add_edge("A", "B")
|
| 231 |
+
G2 = nx.DiGraph()
|
| 232 |
+
G2.add_edge(1, 2)
|
| 233 |
+
G3 = nx.DiGraph()
|
| 234 |
+
G3.add_edge(11, 22)
|
| 235 |
+
G4 = nx.union_all([G1, G2, G3], rename=("G1", "G2", "G3"))
|
| 236 |
+
assert sorted(G4.nodes()) == ["G1A", "G1B", "G21", "G22", "G311", "G322"]
|
| 237 |
+
|
| 238 |
+
|
| 239 |
+
def test_union_all_multigraph():
|
| 240 |
+
G = nx.MultiGraph()
|
| 241 |
+
G.add_edge(1, 2, key=0)
|
| 242 |
+
G.add_edge(1, 2, key=1)
|
| 243 |
+
H = nx.MultiGraph()
|
| 244 |
+
H.add_edge(3, 4, key=0)
|
| 245 |
+
H.add_edge(3, 4, key=1)
|
| 246 |
+
GH = nx.union_all([G, H])
|
| 247 |
+
assert set(GH) == set(G) | set(H)
|
| 248 |
+
assert set(GH.edges(keys=True)) == set(G.edges(keys=True)) | set(H.edges(keys=True))
|
| 249 |
+
|
| 250 |
+
|
| 251 |
+
def test_input_output():
|
| 252 |
+
l = [nx.Graph([(1, 2)]), nx.Graph([(3, 4)], awesome=True)]
|
| 253 |
+
U = nx.disjoint_union_all(l)
|
| 254 |
+
assert len(l) == 2
|
| 255 |
+
assert U.graph["awesome"]
|
| 256 |
+
C = nx.compose_all(l)
|
| 257 |
+
assert len(l) == 2
|
| 258 |
+
l = [nx.Graph([(1, 2)]), nx.Graph([(1, 2)])]
|
| 259 |
+
R = nx.intersection_all(l)
|
| 260 |
+
assert len(l) == 2
|
| 261 |
+
|
| 262 |
+
|
| 263 |
+
def test_mixed_type_union():
|
| 264 |
+
with pytest.raises(nx.NetworkXError):
|
| 265 |
+
G = nx.Graph()
|
| 266 |
+
H = nx.MultiGraph()
|
| 267 |
+
I = nx.Graph()
|
| 268 |
+
U = nx.union_all([G, H, I])
|
| 269 |
+
with pytest.raises(nx.NetworkXError):
|
| 270 |
+
X = nx.Graph()
|
| 271 |
+
Y = nx.DiGraph()
|
| 272 |
+
XY = nx.union_all([X, Y])
|
| 273 |
+
|
| 274 |
+
|
| 275 |
+
def test_mixed_type_disjoint_union():
|
| 276 |
+
with pytest.raises(nx.NetworkXError):
|
| 277 |
+
G = nx.Graph()
|
| 278 |
+
H = nx.MultiGraph()
|
| 279 |
+
I = nx.Graph()
|
| 280 |
+
U = nx.disjoint_union_all([G, H, I])
|
| 281 |
+
with pytest.raises(nx.NetworkXError):
|
| 282 |
+
X = nx.Graph()
|
| 283 |
+
Y = nx.DiGraph()
|
| 284 |
+
XY = nx.disjoint_union_all([X, Y])
|
| 285 |
+
|
| 286 |
+
|
| 287 |
+
def test_mixed_type_intersection():
|
| 288 |
+
with pytest.raises(nx.NetworkXError):
|
| 289 |
+
G = nx.Graph()
|
| 290 |
+
H = nx.MultiGraph()
|
| 291 |
+
I = nx.Graph()
|
| 292 |
+
U = nx.intersection_all([G, H, I])
|
| 293 |
+
with pytest.raises(nx.NetworkXError):
|
| 294 |
+
X = nx.Graph()
|
| 295 |
+
Y = nx.DiGraph()
|
| 296 |
+
XY = nx.intersection_all([X, Y])
|
| 297 |
+
|
| 298 |
+
|
| 299 |
+
def test_mixed_type_compose():
|
| 300 |
+
with pytest.raises(nx.NetworkXError):
|
| 301 |
+
G = nx.Graph()
|
| 302 |
+
H = nx.MultiGraph()
|
| 303 |
+
I = nx.Graph()
|
| 304 |
+
U = nx.compose_all([G, H, I])
|
| 305 |
+
with pytest.raises(nx.NetworkXError):
|
| 306 |
+
X = nx.Graph()
|
| 307 |
+
Y = nx.DiGraph()
|
| 308 |
+
XY = nx.compose_all([X, Y])
|
| 309 |
+
|
| 310 |
+
|
| 311 |
+
def test_empty_union():
|
| 312 |
+
with pytest.raises(ValueError):
|
| 313 |
+
nx.union_all([])
|
| 314 |
+
|
| 315 |
+
|
| 316 |
+
def test_empty_disjoint_union():
|
| 317 |
+
with pytest.raises(ValueError):
|
| 318 |
+
nx.disjoint_union_all([])
|
| 319 |
+
|
| 320 |
+
|
| 321 |
+
def test_empty_compose_all():
|
| 322 |
+
with pytest.raises(ValueError):
|
| 323 |
+
nx.compose_all([])
|
| 324 |
+
|
| 325 |
+
|
| 326 |
+
def test_empty_intersection_all():
|
| 327 |
+
with pytest.raises(ValueError):
|
| 328 |
+
nx.intersection_all([])
|
code/LaDi-RL-old-qwen-cod/LaDi-RL-old-qwen-cod/venv/lib64/python3.10/site-packages/networkx/algorithms/operators/tests/test_binary.py
ADDED
|
@@ -0,0 +1,453 @@
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|
| 1 |
+
import os
|
| 2 |
+
|
| 3 |
+
import pytest
|
| 4 |
+
|
| 5 |
+
import networkx as nx
|
| 6 |
+
from networkx.utils import edges_equal
|
| 7 |
+
|
| 8 |
+
|
| 9 |
+
def test_union_attributes():
|
| 10 |
+
g = nx.Graph()
|
| 11 |
+
g.add_node(0, x=4)
|
| 12 |
+
g.add_node(1, x=5)
|
| 13 |
+
g.add_edge(0, 1, size=5)
|
| 14 |
+
g.graph["name"] = "g"
|
| 15 |
+
|
| 16 |
+
h = g.copy()
|
| 17 |
+
h.graph["name"] = "h"
|
| 18 |
+
h.graph["attr"] = "attr"
|
| 19 |
+
h.nodes[0]["x"] = 7
|
| 20 |
+
|
| 21 |
+
gh = nx.union(g, h, rename=("g", "h"))
|
| 22 |
+
assert set(gh.nodes()) == {"h0", "h1", "g0", "g1"}
|
| 23 |
+
for n in gh:
|
| 24 |
+
graph, node = n
|
| 25 |
+
assert gh.nodes[n] == eval(graph).nodes[int(node)]
|
| 26 |
+
|
| 27 |
+
assert gh.graph["attr"] == "attr"
|
| 28 |
+
assert gh.graph["name"] == "h" # h graph attributes take precedent
|
| 29 |
+
|
| 30 |
+
|
| 31 |
+
def test_intersection():
|
| 32 |
+
G = nx.Graph()
|
| 33 |
+
H = nx.Graph()
|
| 34 |
+
G.add_nodes_from([1, 2, 3, 4])
|
| 35 |
+
G.add_edge(1, 2)
|
| 36 |
+
G.add_edge(2, 3)
|
| 37 |
+
H.add_nodes_from([1, 2, 3, 4])
|
| 38 |
+
H.add_edge(2, 3)
|
| 39 |
+
H.add_edge(3, 4)
|
| 40 |
+
I = nx.intersection(G, H)
|
| 41 |
+
assert set(I.nodes()) == {1, 2, 3, 4}
|
| 42 |
+
assert sorted(I.edges()) == [(2, 3)]
|
| 43 |
+
|
| 44 |
+
|
| 45 |
+
def test_intersection_node_sets_different():
|
| 46 |
+
G = nx.Graph()
|
| 47 |
+
H = nx.Graph()
|
| 48 |
+
G.add_nodes_from([1, 2, 3, 4, 7])
|
| 49 |
+
G.add_edge(1, 2)
|
| 50 |
+
G.add_edge(2, 3)
|
| 51 |
+
H.add_nodes_from([1, 2, 3, 4, 5, 6])
|
| 52 |
+
H.add_edge(2, 3)
|
| 53 |
+
H.add_edge(3, 4)
|
| 54 |
+
H.add_edge(5, 6)
|
| 55 |
+
I = nx.intersection(G, H)
|
| 56 |
+
assert set(I.nodes()) == {1, 2, 3, 4}
|
| 57 |
+
assert sorted(I.edges()) == [(2, 3)]
|
| 58 |
+
|
| 59 |
+
|
| 60 |
+
def test_intersection_attributes():
|
| 61 |
+
g = nx.Graph()
|
| 62 |
+
g.add_node(0, x=4)
|
| 63 |
+
g.add_node(1, x=5)
|
| 64 |
+
g.add_edge(0, 1, size=5)
|
| 65 |
+
g.graph["name"] = "g"
|
| 66 |
+
|
| 67 |
+
h = g.copy()
|
| 68 |
+
h.graph["name"] = "h"
|
| 69 |
+
h.graph["attr"] = "attr"
|
| 70 |
+
h.nodes[0]["x"] = 7
|
| 71 |
+
gh = nx.intersection(g, h)
|
| 72 |
+
|
| 73 |
+
assert set(gh.nodes()) == set(g.nodes())
|
| 74 |
+
assert set(gh.nodes()) == set(h.nodes())
|
| 75 |
+
assert sorted(gh.edges()) == sorted(g.edges())
|
| 76 |
+
|
| 77 |
+
|
| 78 |
+
def test_intersection_attributes_node_sets_different():
|
| 79 |
+
g = nx.Graph()
|
| 80 |
+
g.add_node(0, x=4)
|
| 81 |
+
g.add_node(1, x=5)
|
| 82 |
+
g.add_node(2, x=3)
|
| 83 |
+
g.add_edge(0, 1, size=5)
|
| 84 |
+
g.graph["name"] = "g"
|
| 85 |
+
|
| 86 |
+
h = g.copy()
|
| 87 |
+
h.graph["name"] = "h"
|
| 88 |
+
h.graph["attr"] = "attr"
|
| 89 |
+
h.nodes[0]["x"] = 7
|
| 90 |
+
h.remove_node(2)
|
| 91 |
+
|
| 92 |
+
gh = nx.intersection(g, h)
|
| 93 |
+
assert set(gh.nodes()) == set(h.nodes())
|
| 94 |
+
assert sorted(gh.edges()) == sorted(g.edges())
|
| 95 |
+
|
| 96 |
+
|
| 97 |
+
def test_intersection_multigraph_attributes():
|
| 98 |
+
g = nx.MultiGraph()
|
| 99 |
+
g.add_edge(0, 1, key=0)
|
| 100 |
+
g.add_edge(0, 1, key=1)
|
| 101 |
+
g.add_edge(0, 1, key=2)
|
| 102 |
+
h = nx.MultiGraph()
|
| 103 |
+
h.add_edge(0, 1, key=0)
|
| 104 |
+
h.add_edge(0, 1, key=3)
|
| 105 |
+
gh = nx.intersection(g, h)
|
| 106 |
+
assert set(gh.nodes()) == set(g.nodes())
|
| 107 |
+
assert set(gh.nodes()) == set(h.nodes())
|
| 108 |
+
assert sorted(gh.edges()) == [(0, 1)]
|
| 109 |
+
assert sorted(gh.edges(keys=True)) == [(0, 1, 0)]
|
| 110 |
+
|
| 111 |
+
|
| 112 |
+
def test_intersection_multigraph_attributes_node_set_different():
|
| 113 |
+
g = nx.MultiGraph()
|
| 114 |
+
g.add_edge(0, 1, key=0)
|
| 115 |
+
g.add_edge(0, 1, key=1)
|
| 116 |
+
g.add_edge(0, 1, key=2)
|
| 117 |
+
g.add_edge(0, 2, key=2)
|
| 118 |
+
g.add_edge(0, 2, key=1)
|
| 119 |
+
h = nx.MultiGraph()
|
| 120 |
+
h.add_edge(0, 1, key=0)
|
| 121 |
+
h.add_edge(0, 1, key=3)
|
| 122 |
+
gh = nx.intersection(g, h)
|
| 123 |
+
assert set(gh.nodes()) == set(h.nodes())
|
| 124 |
+
assert sorted(gh.edges()) == [(0, 1)]
|
| 125 |
+
assert sorted(gh.edges(keys=True)) == [(0, 1, 0)]
|
| 126 |
+
|
| 127 |
+
|
| 128 |
+
def test_difference():
|
| 129 |
+
G = nx.Graph()
|
| 130 |
+
H = nx.Graph()
|
| 131 |
+
G.add_nodes_from([1, 2, 3, 4])
|
| 132 |
+
G.add_edge(1, 2)
|
| 133 |
+
G.add_edge(2, 3)
|
| 134 |
+
H.add_nodes_from([1, 2, 3, 4])
|
| 135 |
+
H.add_edge(2, 3)
|
| 136 |
+
H.add_edge(3, 4)
|
| 137 |
+
D = nx.difference(G, H)
|
| 138 |
+
assert set(D.nodes()) == {1, 2, 3, 4}
|
| 139 |
+
assert sorted(D.edges()) == [(1, 2)]
|
| 140 |
+
D = nx.difference(H, G)
|
| 141 |
+
assert set(D.nodes()) == {1, 2, 3, 4}
|
| 142 |
+
assert sorted(D.edges()) == [(3, 4)]
|
| 143 |
+
D = nx.symmetric_difference(G, H)
|
| 144 |
+
assert set(D.nodes()) == {1, 2, 3, 4}
|
| 145 |
+
assert sorted(D.edges()) == [(1, 2), (3, 4)]
|
| 146 |
+
|
| 147 |
+
|
| 148 |
+
def test_difference2():
|
| 149 |
+
G = nx.Graph()
|
| 150 |
+
H = nx.Graph()
|
| 151 |
+
G.add_nodes_from([1, 2, 3, 4])
|
| 152 |
+
H.add_nodes_from([1, 2, 3, 4])
|
| 153 |
+
G.add_edge(1, 2)
|
| 154 |
+
H.add_edge(1, 2)
|
| 155 |
+
G.add_edge(2, 3)
|
| 156 |
+
D = nx.difference(G, H)
|
| 157 |
+
assert set(D.nodes()) == {1, 2, 3, 4}
|
| 158 |
+
assert sorted(D.edges()) == [(2, 3)]
|
| 159 |
+
D = nx.difference(H, G)
|
| 160 |
+
assert set(D.nodes()) == {1, 2, 3, 4}
|
| 161 |
+
assert sorted(D.edges()) == []
|
| 162 |
+
H.add_edge(3, 4)
|
| 163 |
+
D = nx.difference(H, G)
|
| 164 |
+
assert set(D.nodes()) == {1, 2, 3, 4}
|
| 165 |
+
assert sorted(D.edges()) == [(3, 4)]
|
| 166 |
+
|
| 167 |
+
|
| 168 |
+
def test_difference_attributes():
|
| 169 |
+
g = nx.Graph()
|
| 170 |
+
g.add_node(0, x=4)
|
| 171 |
+
g.add_node(1, x=5)
|
| 172 |
+
g.add_edge(0, 1, size=5)
|
| 173 |
+
g.graph["name"] = "g"
|
| 174 |
+
|
| 175 |
+
h = g.copy()
|
| 176 |
+
h.graph["name"] = "h"
|
| 177 |
+
h.graph["attr"] = "attr"
|
| 178 |
+
h.nodes[0]["x"] = 7
|
| 179 |
+
|
| 180 |
+
gh = nx.difference(g, h)
|
| 181 |
+
assert set(gh.nodes()) == set(g.nodes())
|
| 182 |
+
assert set(gh.nodes()) == set(h.nodes())
|
| 183 |
+
assert sorted(gh.edges()) == []
|
| 184 |
+
# node and graph data should not be copied over
|
| 185 |
+
assert gh.nodes.data() != g.nodes.data()
|
| 186 |
+
assert gh.graph != g.graph
|
| 187 |
+
|
| 188 |
+
|
| 189 |
+
def test_difference_multigraph_attributes():
|
| 190 |
+
g = nx.MultiGraph()
|
| 191 |
+
g.add_edge(0, 1, key=0)
|
| 192 |
+
g.add_edge(0, 1, key=1)
|
| 193 |
+
g.add_edge(0, 1, key=2)
|
| 194 |
+
h = nx.MultiGraph()
|
| 195 |
+
h.add_edge(0, 1, key=0)
|
| 196 |
+
h.add_edge(0, 1, key=3)
|
| 197 |
+
gh = nx.difference(g, h)
|
| 198 |
+
assert set(gh.nodes()) == set(g.nodes())
|
| 199 |
+
assert set(gh.nodes()) == set(h.nodes())
|
| 200 |
+
assert sorted(gh.edges()) == [(0, 1), (0, 1)]
|
| 201 |
+
assert sorted(gh.edges(keys=True)) == [(0, 1, 1), (0, 1, 2)]
|
| 202 |
+
|
| 203 |
+
|
| 204 |
+
def test_difference_raise():
|
| 205 |
+
G = nx.path_graph(4)
|
| 206 |
+
H = nx.path_graph(3)
|
| 207 |
+
pytest.raises(nx.NetworkXError, nx.difference, G, H)
|
| 208 |
+
pytest.raises(nx.NetworkXError, nx.symmetric_difference, G, H)
|
| 209 |
+
|
| 210 |
+
|
| 211 |
+
def test_symmetric_difference_multigraph():
|
| 212 |
+
g = nx.MultiGraph()
|
| 213 |
+
g.add_edge(0, 1, key=0)
|
| 214 |
+
g.add_edge(0, 1, key=1)
|
| 215 |
+
g.add_edge(0, 1, key=2)
|
| 216 |
+
h = nx.MultiGraph()
|
| 217 |
+
h.add_edge(0, 1, key=0)
|
| 218 |
+
h.add_edge(0, 1, key=3)
|
| 219 |
+
gh = nx.symmetric_difference(g, h)
|
| 220 |
+
assert set(gh.nodes()) == set(g.nodes())
|
| 221 |
+
assert set(gh.nodes()) == set(h.nodes())
|
| 222 |
+
assert sorted(gh.edges()) == 3 * [(0, 1)]
|
| 223 |
+
assert sorted(sorted(e) for e in gh.edges(keys=True)) == [
|
| 224 |
+
[0, 1, 1],
|
| 225 |
+
[0, 1, 2],
|
| 226 |
+
[0, 1, 3],
|
| 227 |
+
]
|
| 228 |
+
|
| 229 |
+
|
| 230 |
+
def test_union_and_compose():
|
| 231 |
+
K3 = nx.complete_graph(3)
|
| 232 |
+
P3 = nx.path_graph(3)
|
| 233 |
+
|
| 234 |
+
G1 = nx.DiGraph()
|
| 235 |
+
G1.add_edge("A", "B")
|
| 236 |
+
G1.add_edge("A", "C")
|
| 237 |
+
G1.add_edge("A", "D")
|
| 238 |
+
G2 = nx.DiGraph()
|
| 239 |
+
G2.add_edge("1", "2")
|
| 240 |
+
G2.add_edge("1", "3")
|
| 241 |
+
G2.add_edge("1", "4")
|
| 242 |
+
|
| 243 |
+
G = nx.union(G1, G2)
|
| 244 |
+
H = nx.compose(G1, G2)
|
| 245 |
+
assert edges_equal(G.edges(), H.edges())
|
| 246 |
+
assert not G.has_edge("A", 1)
|
| 247 |
+
pytest.raises(nx.NetworkXError, nx.union, K3, P3)
|
| 248 |
+
H1 = nx.union(H, G1, rename=("H", "G1"))
|
| 249 |
+
assert sorted(H1.nodes()) == [
|
| 250 |
+
"G1A",
|
| 251 |
+
"G1B",
|
| 252 |
+
"G1C",
|
| 253 |
+
"G1D",
|
| 254 |
+
"H1",
|
| 255 |
+
"H2",
|
| 256 |
+
"H3",
|
| 257 |
+
"H4",
|
| 258 |
+
"HA",
|
| 259 |
+
"HB",
|
| 260 |
+
"HC",
|
| 261 |
+
"HD",
|
| 262 |
+
]
|
| 263 |
+
|
| 264 |
+
H2 = nx.union(H, G2, rename=("H", ""))
|
| 265 |
+
assert sorted(H2.nodes()) == [
|
| 266 |
+
"1",
|
| 267 |
+
"2",
|
| 268 |
+
"3",
|
| 269 |
+
"4",
|
| 270 |
+
"H1",
|
| 271 |
+
"H2",
|
| 272 |
+
"H3",
|
| 273 |
+
"H4",
|
| 274 |
+
"HA",
|
| 275 |
+
"HB",
|
| 276 |
+
"HC",
|
| 277 |
+
"HD",
|
| 278 |
+
]
|
| 279 |
+
|
| 280 |
+
assert not H1.has_edge("NB", "NA")
|
| 281 |
+
|
| 282 |
+
G = nx.compose(G, G)
|
| 283 |
+
assert edges_equal(G.edges(), H.edges())
|
| 284 |
+
|
| 285 |
+
G2 = nx.union(G2, G2, rename=("", "copy"))
|
| 286 |
+
assert sorted(G2.nodes()) == [
|
| 287 |
+
"1",
|
| 288 |
+
"2",
|
| 289 |
+
"3",
|
| 290 |
+
"4",
|
| 291 |
+
"copy1",
|
| 292 |
+
"copy2",
|
| 293 |
+
"copy3",
|
| 294 |
+
"copy4",
|
| 295 |
+
]
|
| 296 |
+
|
| 297 |
+
assert sorted(G2.neighbors("copy4")) == []
|
| 298 |
+
assert sorted(G2.neighbors("copy1")) == ["copy2", "copy3", "copy4"]
|
| 299 |
+
assert len(G) == 8
|
| 300 |
+
assert nx.number_of_edges(G) == 6
|
| 301 |
+
|
| 302 |
+
E = nx.disjoint_union(G, G)
|
| 303 |
+
assert len(E) == 16
|
| 304 |
+
assert nx.number_of_edges(E) == 12
|
| 305 |
+
|
| 306 |
+
E = nx.disjoint_union(G1, G2)
|
| 307 |
+
assert sorted(E.nodes()) == [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11]
|
| 308 |
+
|
| 309 |
+
G = nx.Graph()
|
| 310 |
+
H = nx.Graph()
|
| 311 |
+
G.add_nodes_from([(1, {"a1": 1})])
|
| 312 |
+
H.add_nodes_from([(1, {"b1": 1})])
|
| 313 |
+
R = nx.compose(G, H)
|
| 314 |
+
assert R.nodes == {1: {"a1": 1, "b1": 1}}
|
| 315 |
+
|
| 316 |
+
|
| 317 |
+
def test_union_multigraph():
|
| 318 |
+
G = nx.MultiGraph()
|
| 319 |
+
G.add_edge(1, 2, key=0)
|
| 320 |
+
G.add_edge(1, 2, key=1)
|
| 321 |
+
H = nx.MultiGraph()
|
| 322 |
+
H.add_edge(3, 4, key=0)
|
| 323 |
+
H.add_edge(3, 4, key=1)
|
| 324 |
+
GH = nx.union(G, H)
|
| 325 |
+
assert set(GH) == set(G) | set(H)
|
| 326 |
+
assert set(GH.edges(keys=True)) == set(G.edges(keys=True)) | set(H.edges(keys=True))
|
| 327 |
+
|
| 328 |
+
|
| 329 |
+
def test_disjoint_union_multigraph():
|
| 330 |
+
G = nx.MultiGraph()
|
| 331 |
+
G.add_edge(0, 1, key=0)
|
| 332 |
+
G.add_edge(0, 1, key=1)
|
| 333 |
+
H = nx.MultiGraph()
|
| 334 |
+
H.add_edge(2, 3, key=0)
|
| 335 |
+
H.add_edge(2, 3, key=1)
|
| 336 |
+
GH = nx.disjoint_union(G, H)
|
| 337 |
+
assert set(GH) == set(G) | set(H)
|
| 338 |
+
assert set(GH.edges(keys=True)) == set(G.edges(keys=True)) | set(H.edges(keys=True))
|
| 339 |
+
|
| 340 |
+
|
| 341 |
+
def test_compose_multigraph():
|
| 342 |
+
G = nx.MultiGraph()
|
| 343 |
+
G.add_edge(1, 2, key=0)
|
| 344 |
+
G.add_edge(1, 2, key=1)
|
| 345 |
+
H = nx.MultiGraph()
|
| 346 |
+
H.add_edge(3, 4, key=0)
|
| 347 |
+
H.add_edge(3, 4, key=1)
|
| 348 |
+
GH = nx.compose(G, H)
|
| 349 |
+
assert set(GH) == set(G) | set(H)
|
| 350 |
+
assert set(GH.edges(keys=True)) == set(G.edges(keys=True)) | set(H.edges(keys=True))
|
| 351 |
+
H.add_edge(1, 2, key=2)
|
| 352 |
+
GH = nx.compose(G, H)
|
| 353 |
+
assert set(GH) == set(G) | set(H)
|
| 354 |
+
assert set(GH.edges(keys=True)) == set(G.edges(keys=True)) | set(H.edges(keys=True))
|
| 355 |
+
|
| 356 |
+
|
| 357 |
+
def test_full_join_graph():
|
| 358 |
+
# Simple Graphs
|
| 359 |
+
G = nx.Graph()
|
| 360 |
+
G.add_node(0)
|
| 361 |
+
G.add_edge(1, 2)
|
| 362 |
+
H = nx.Graph()
|
| 363 |
+
H.add_edge(3, 4)
|
| 364 |
+
|
| 365 |
+
U = nx.full_join(G, H)
|
| 366 |
+
assert set(U) == set(G) | set(H)
|
| 367 |
+
assert len(U) == len(G) + len(H)
|
| 368 |
+
assert len(U.edges()) == len(G.edges()) + len(H.edges()) + len(G) * len(H)
|
| 369 |
+
|
| 370 |
+
# Rename
|
| 371 |
+
U = nx.full_join(G, H, rename=("g", "h"))
|
| 372 |
+
assert set(U) == {"g0", "g1", "g2", "h3", "h4"}
|
| 373 |
+
assert len(U) == len(G) + len(H)
|
| 374 |
+
assert len(U.edges()) == len(G.edges()) + len(H.edges()) + len(G) * len(H)
|
| 375 |
+
|
| 376 |
+
# Rename graphs with string-like nodes
|
| 377 |
+
G = nx.Graph()
|
| 378 |
+
G.add_node("a")
|
| 379 |
+
G.add_edge("b", "c")
|
| 380 |
+
H = nx.Graph()
|
| 381 |
+
H.add_edge("d", "e")
|
| 382 |
+
|
| 383 |
+
U = nx.full_join(G, H, rename=("g", "h"))
|
| 384 |
+
assert set(U) == {"ga", "gb", "gc", "hd", "he"}
|
| 385 |
+
assert len(U) == len(G) + len(H)
|
| 386 |
+
assert len(U.edges()) == len(G.edges()) + len(H.edges()) + len(G) * len(H)
|
| 387 |
+
|
| 388 |
+
# DiGraphs
|
| 389 |
+
G = nx.DiGraph()
|
| 390 |
+
G.add_node(0)
|
| 391 |
+
G.add_edge(1, 2)
|
| 392 |
+
H = nx.DiGraph()
|
| 393 |
+
H.add_edge(3, 4)
|
| 394 |
+
|
| 395 |
+
U = nx.full_join(G, H)
|
| 396 |
+
assert set(U) == set(G) | set(H)
|
| 397 |
+
assert len(U) == len(G) + len(H)
|
| 398 |
+
assert len(U.edges()) == len(G.edges()) + len(H.edges()) + len(G) * len(H) * 2
|
| 399 |
+
|
| 400 |
+
# DiGraphs Rename
|
| 401 |
+
U = nx.full_join(G, H, rename=("g", "h"))
|
| 402 |
+
assert set(U) == {"g0", "g1", "g2", "h3", "h4"}
|
| 403 |
+
assert len(U) == len(G) + len(H)
|
| 404 |
+
assert len(U.edges()) == len(G.edges()) + len(H.edges()) + len(G) * len(H) * 2
|
| 405 |
+
|
| 406 |
+
|
| 407 |
+
def test_full_join_multigraph():
|
| 408 |
+
# MultiGraphs
|
| 409 |
+
G = nx.MultiGraph()
|
| 410 |
+
G.add_node(0)
|
| 411 |
+
G.add_edge(1, 2)
|
| 412 |
+
H = nx.MultiGraph()
|
| 413 |
+
H.add_edge(3, 4)
|
| 414 |
+
|
| 415 |
+
U = nx.full_join(G, H)
|
| 416 |
+
assert set(U) == set(G) | set(H)
|
| 417 |
+
assert len(U) == len(G) + len(H)
|
| 418 |
+
assert len(U.edges()) == len(G.edges()) + len(H.edges()) + len(G) * len(H)
|
| 419 |
+
|
| 420 |
+
# MultiGraphs rename
|
| 421 |
+
U = nx.full_join(G, H, rename=("g", "h"))
|
| 422 |
+
assert set(U) == {"g0", "g1", "g2", "h3", "h4"}
|
| 423 |
+
assert len(U) == len(G) + len(H)
|
| 424 |
+
assert len(U.edges()) == len(G.edges()) + len(H.edges()) + len(G) * len(H)
|
| 425 |
+
|
| 426 |
+
# MultiDiGraphs
|
| 427 |
+
G = nx.MultiDiGraph()
|
| 428 |
+
G.add_node(0)
|
| 429 |
+
G.add_edge(1, 2)
|
| 430 |
+
H = nx.MultiDiGraph()
|
| 431 |
+
H.add_edge(3, 4)
|
| 432 |
+
|
| 433 |
+
U = nx.full_join(G, H)
|
| 434 |
+
assert set(U) == set(G) | set(H)
|
| 435 |
+
assert len(U) == len(G) + len(H)
|
| 436 |
+
assert len(U.edges()) == len(G.edges()) + len(H.edges()) + len(G) * len(H) * 2
|
| 437 |
+
|
| 438 |
+
# MultiDiGraphs rename
|
| 439 |
+
U = nx.full_join(G, H, rename=("g", "h"))
|
| 440 |
+
assert set(U) == {"g0", "g1", "g2", "h3", "h4"}
|
| 441 |
+
assert len(U) == len(G) + len(H)
|
| 442 |
+
assert len(U.edges()) == len(G.edges()) + len(H.edges()) + len(G) * len(H) * 2
|
| 443 |
+
|
| 444 |
+
|
| 445 |
+
def test_mixed_type_union():
|
| 446 |
+
G = nx.Graph()
|
| 447 |
+
H = nx.MultiGraph()
|
| 448 |
+
pytest.raises(nx.NetworkXError, nx.union, G, H)
|
| 449 |
+
pytest.raises(nx.NetworkXError, nx.disjoint_union, G, H)
|
| 450 |
+
pytest.raises(nx.NetworkXError, nx.intersection, G, H)
|
| 451 |
+
pytest.raises(nx.NetworkXError, nx.difference, G, H)
|
| 452 |
+
pytest.raises(nx.NetworkXError, nx.symmetric_difference, G, H)
|
| 453 |
+
pytest.raises(nx.NetworkXError, nx.compose, G, H)
|
code/LaDi-RL-old-qwen-cod/LaDi-RL-old-qwen-cod/venv/lib64/python3.10/site-packages/networkx/algorithms/operators/tests/test_product.py
ADDED
|
@@ -0,0 +1,491 @@
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|
| 1 |
+
import pytest
|
| 2 |
+
|
| 3 |
+
import networkx as nx
|
| 4 |
+
from networkx.utils import edges_equal
|
| 5 |
+
|
| 6 |
+
|
| 7 |
+
def test_tensor_product_raises():
|
| 8 |
+
with pytest.raises(nx.NetworkXError):
|
| 9 |
+
P = nx.tensor_product(nx.DiGraph(), nx.Graph())
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
def test_tensor_product_null():
|
| 13 |
+
null = nx.null_graph()
|
| 14 |
+
empty10 = nx.empty_graph(10)
|
| 15 |
+
K3 = nx.complete_graph(3)
|
| 16 |
+
K10 = nx.complete_graph(10)
|
| 17 |
+
P3 = nx.path_graph(3)
|
| 18 |
+
P10 = nx.path_graph(10)
|
| 19 |
+
# null graph
|
| 20 |
+
G = nx.tensor_product(null, null)
|
| 21 |
+
assert nx.is_isomorphic(G, null)
|
| 22 |
+
# null_graph X anything = null_graph and v.v.
|
| 23 |
+
G = nx.tensor_product(null, empty10)
|
| 24 |
+
assert nx.is_isomorphic(G, null)
|
| 25 |
+
G = nx.tensor_product(null, K3)
|
| 26 |
+
assert nx.is_isomorphic(G, null)
|
| 27 |
+
G = nx.tensor_product(null, K10)
|
| 28 |
+
assert nx.is_isomorphic(G, null)
|
| 29 |
+
G = nx.tensor_product(null, P3)
|
| 30 |
+
assert nx.is_isomorphic(G, null)
|
| 31 |
+
G = nx.tensor_product(null, P10)
|
| 32 |
+
assert nx.is_isomorphic(G, null)
|
| 33 |
+
G = nx.tensor_product(empty10, null)
|
| 34 |
+
assert nx.is_isomorphic(G, null)
|
| 35 |
+
G = nx.tensor_product(K3, null)
|
| 36 |
+
assert nx.is_isomorphic(G, null)
|
| 37 |
+
G = nx.tensor_product(K10, null)
|
| 38 |
+
assert nx.is_isomorphic(G, null)
|
| 39 |
+
G = nx.tensor_product(P3, null)
|
| 40 |
+
assert nx.is_isomorphic(G, null)
|
| 41 |
+
G = nx.tensor_product(P10, null)
|
| 42 |
+
assert nx.is_isomorphic(G, null)
|
| 43 |
+
|
| 44 |
+
|
| 45 |
+
def test_tensor_product_size():
|
| 46 |
+
P5 = nx.path_graph(5)
|
| 47 |
+
K3 = nx.complete_graph(3)
|
| 48 |
+
K5 = nx.complete_graph(5)
|
| 49 |
+
|
| 50 |
+
G = nx.tensor_product(P5, K3)
|
| 51 |
+
assert nx.number_of_nodes(G) == 5 * 3
|
| 52 |
+
G = nx.tensor_product(K3, K5)
|
| 53 |
+
assert nx.number_of_nodes(G) == 3 * 5
|
| 54 |
+
|
| 55 |
+
|
| 56 |
+
def test_tensor_product_combinations():
|
| 57 |
+
# basic smoke test, more realistic tests would be useful
|
| 58 |
+
P5 = nx.path_graph(5)
|
| 59 |
+
K3 = nx.complete_graph(3)
|
| 60 |
+
G = nx.tensor_product(P5, K3)
|
| 61 |
+
assert nx.number_of_nodes(G) == 5 * 3
|
| 62 |
+
G = nx.tensor_product(P5, nx.MultiGraph(K3))
|
| 63 |
+
assert nx.number_of_nodes(G) == 5 * 3
|
| 64 |
+
G = nx.tensor_product(nx.MultiGraph(P5), K3)
|
| 65 |
+
assert nx.number_of_nodes(G) == 5 * 3
|
| 66 |
+
G = nx.tensor_product(nx.MultiGraph(P5), nx.MultiGraph(K3))
|
| 67 |
+
assert nx.number_of_nodes(G) == 5 * 3
|
| 68 |
+
|
| 69 |
+
G = nx.tensor_product(nx.DiGraph(P5), nx.DiGraph(K3))
|
| 70 |
+
assert nx.number_of_nodes(G) == 5 * 3
|
| 71 |
+
|
| 72 |
+
|
| 73 |
+
def test_tensor_product_classic_result():
|
| 74 |
+
K2 = nx.complete_graph(2)
|
| 75 |
+
G = nx.petersen_graph()
|
| 76 |
+
G = nx.tensor_product(G, K2)
|
| 77 |
+
assert nx.is_isomorphic(G, nx.desargues_graph())
|
| 78 |
+
|
| 79 |
+
G = nx.cycle_graph(5)
|
| 80 |
+
G = nx.tensor_product(G, K2)
|
| 81 |
+
assert nx.is_isomorphic(G, nx.cycle_graph(10))
|
| 82 |
+
|
| 83 |
+
G = nx.tetrahedral_graph()
|
| 84 |
+
G = nx.tensor_product(G, K2)
|
| 85 |
+
assert nx.is_isomorphic(G, nx.cubical_graph())
|
| 86 |
+
|
| 87 |
+
|
| 88 |
+
def test_tensor_product_random():
|
| 89 |
+
G = nx.erdos_renyi_graph(10, 2 / 10.0)
|
| 90 |
+
H = nx.erdos_renyi_graph(10, 2 / 10.0)
|
| 91 |
+
GH = nx.tensor_product(G, H)
|
| 92 |
+
|
| 93 |
+
for u_G, u_H in GH.nodes():
|
| 94 |
+
for v_G, v_H in GH.nodes():
|
| 95 |
+
if H.has_edge(u_H, v_H) and G.has_edge(u_G, v_G):
|
| 96 |
+
assert GH.has_edge((u_G, u_H), (v_G, v_H))
|
| 97 |
+
else:
|
| 98 |
+
assert not GH.has_edge((u_G, u_H), (v_G, v_H))
|
| 99 |
+
|
| 100 |
+
|
| 101 |
+
def test_cartesian_product_multigraph():
|
| 102 |
+
G = nx.MultiGraph()
|
| 103 |
+
G.add_edge(1, 2, key=0)
|
| 104 |
+
G.add_edge(1, 2, key=1)
|
| 105 |
+
H = nx.MultiGraph()
|
| 106 |
+
H.add_edge(3, 4, key=0)
|
| 107 |
+
H.add_edge(3, 4, key=1)
|
| 108 |
+
GH = nx.cartesian_product(G, H)
|
| 109 |
+
assert set(GH) == {(1, 3), (2, 3), (2, 4), (1, 4)}
|
| 110 |
+
assert {(frozenset([u, v]), k) for u, v, k in GH.edges(keys=True)} == {
|
| 111 |
+
(frozenset([u, v]), k)
|
| 112 |
+
for u, v, k in [
|
| 113 |
+
((1, 3), (2, 3), 0),
|
| 114 |
+
((1, 3), (2, 3), 1),
|
| 115 |
+
((1, 3), (1, 4), 0),
|
| 116 |
+
((1, 3), (1, 4), 1),
|
| 117 |
+
((2, 3), (2, 4), 0),
|
| 118 |
+
((2, 3), (2, 4), 1),
|
| 119 |
+
((2, 4), (1, 4), 0),
|
| 120 |
+
((2, 4), (1, 4), 1),
|
| 121 |
+
]
|
| 122 |
+
}
|
| 123 |
+
|
| 124 |
+
|
| 125 |
+
def test_cartesian_product_raises():
|
| 126 |
+
with pytest.raises(nx.NetworkXError):
|
| 127 |
+
P = nx.cartesian_product(nx.DiGraph(), nx.Graph())
|
| 128 |
+
|
| 129 |
+
|
| 130 |
+
def test_cartesian_product_null():
|
| 131 |
+
null = nx.null_graph()
|
| 132 |
+
empty10 = nx.empty_graph(10)
|
| 133 |
+
K3 = nx.complete_graph(3)
|
| 134 |
+
K10 = nx.complete_graph(10)
|
| 135 |
+
P3 = nx.path_graph(3)
|
| 136 |
+
P10 = nx.path_graph(10)
|
| 137 |
+
# null graph
|
| 138 |
+
G = nx.cartesian_product(null, null)
|
| 139 |
+
assert nx.is_isomorphic(G, null)
|
| 140 |
+
# null_graph X anything = null_graph and v.v.
|
| 141 |
+
G = nx.cartesian_product(null, empty10)
|
| 142 |
+
assert nx.is_isomorphic(G, null)
|
| 143 |
+
G = nx.cartesian_product(null, K3)
|
| 144 |
+
assert nx.is_isomorphic(G, null)
|
| 145 |
+
G = nx.cartesian_product(null, K10)
|
| 146 |
+
assert nx.is_isomorphic(G, null)
|
| 147 |
+
G = nx.cartesian_product(null, P3)
|
| 148 |
+
assert nx.is_isomorphic(G, null)
|
| 149 |
+
G = nx.cartesian_product(null, P10)
|
| 150 |
+
assert nx.is_isomorphic(G, null)
|
| 151 |
+
G = nx.cartesian_product(empty10, null)
|
| 152 |
+
assert nx.is_isomorphic(G, null)
|
| 153 |
+
G = nx.cartesian_product(K3, null)
|
| 154 |
+
assert nx.is_isomorphic(G, null)
|
| 155 |
+
G = nx.cartesian_product(K10, null)
|
| 156 |
+
assert nx.is_isomorphic(G, null)
|
| 157 |
+
G = nx.cartesian_product(P3, null)
|
| 158 |
+
assert nx.is_isomorphic(G, null)
|
| 159 |
+
G = nx.cartesian_product(P10, null)
|
| 160 |
+
assert nx.is_isomorphic(G, null)
|
| 161 |
+
|
| 162 |
+
|
| 163 |
+
def test_cartesian_product_size():
|
| 164 |
+
# order(GXH)=order(G)*order(H)
|
| 165 |
+
K5 = nx.complete_graph(5)
|
| 166 |
+
P5 = nx.path_graph(5)
|
| 167 |
+
K3 = nx.complete_graph(3)
|
| 168 |
+
G = nx.cartesian_product(P5, K3)
|
| 169 |
+
assert nx.number_of_nodes(G) == 5 * 3
|
| 170 |
+
assert nx.number_of_edges(G) == nx.number_of_edges(P5) * nx.number_of_nodes(
|
| 171 |
+
K3
|
| 172 |
+
) + nx.number_of_edges(K3) * nx.number_of_nodes(P5)
|
| 173 |
+
G = nx.cartesian_product(K3, K5)
|
| 174 |
+
assert nx.number_of_nodes(G) == 3 * 5
|
| 175 |
+
assert nx.number_of_edges(G) == nx.number_of_edges(K5) * nx.number_of_nodes(
|
| 176 |
+
K3
|
| 177 |
+
) + nx.number_of_edges(K3) * nx.number_of_nodes(K5)
|
| 178 |
+
|
| 179 |
+
|
| 180 |
+
def test_cartesian_product_classic():
|
| 181 |
+
# test some classic product graphs
|
| 182 |
+
P2 = nx.path_graph(2)
|
| 183 |
+
P3 = nx.path_graph(3)
|
| 184 |
+
# cube = 2-path X 2-path
|
| 185 |
+
G = nx.cartesian_product(P2, P2)
|
| 186 |
+
G = nx.cartesian_product(P2, G)
|
| 187 |
+
assert nx.is_isomorphic(G, nx.cubical_graph())
|
| 188 |
+
|
| 189 |
+
# 3x3 grid
|
| 190 |
+
G = nx.cartesian_product(P3, P3)
|
| 191 |
+
assert nx.is_isomorphic(G, nx.grid_2d_graph(3, 3))
|
| 192 |
+
|
| 193 |
+
|
| 194 |
+
def test_cartesian_product_random():
|
| 195 |
+
G = nx.erdos_renyi_graph(10, 2 / 10.0)
|
| 196 |
+
H = nx.erdos_renyi_graph(10, 2 / 10.0)
|
| 197 |
+
GH = nx.cartesian_product(G, H)
|
| 198 |
+
|
| 199 |
+
for u_G, u_H in GH.nodes():
|
| 200 |
+
for v_G, v_H in GH.nodes():
|
| 201 |
+
if (u_G == v_G and H.has_edge(u_H, v_H)) or (
|
| 202 |
+
u_H == v_H and G.has_edge(u_G, v_G)
|
| 203 |
+
):
|
| 204 |
+
assert GH.has_edge((u_G, u_H), (v_G, v_H))
|
| 205 |
+
else:
|
| 206 |
+
assert not GH.has_edge((u_G, u_H), (v_G, v_H))
|
| 207 |
+
|
| 208 |
+
|
| 209 |
+
def test_lexicographic_product_raises():
|
| 210 |
+
with pytest.raises(nx.NetworkXError):
|
| 211 |
+
P = nx.lexicographic_product(nx.DiGraph(), nx.Graph())
|
| 212 |
+
|
| 213 |
+
|
| 214 |
+
def test_lexicographic_product_null():
|
| 215 |
+
null = nx.null_graph()
|
| 216 |
+
empty10 = nx.empty_graph(10)
|
| 217 |
+
K3 = nx.complete_graph(3)
|
| 218 |
+
K10 = nx.complete_graph(10)
|
| 219 |
+
P3 = nx.path_graph(3)
|
| 220 |
+
P10 = nx.path_graph(10)
|
| 221 |
+
# null graph
|
| 222 |
+
G = nx.lexicographic_product(null, null)
|
| 223 |
+
assert nx.is_isomorphic(G, null)
|
| 224 |
+
# null_graph X anything = null_graph and v.v.
|
| 225 |
+
G = nx.lexicographic_product(null, empty10)
|
| 226 |
+
assert nx.is_isomorphic(G, null)
|
| 227 |
+
G = nx.lexicographic_product(null, K3)
|
| 228 |
+
assert nx.is_isomorphic(G, null)
|
| 229 |
+
G = nx.lexicographic_product(null, K10)
|
| 230 |
+
assert nx.is_isomorphic(G, null)
|
| 231 |
+
G = nx.lexicographic_product(null, P3)
|
| 232 |
+
assert nx.is_isomorphic(G, null)
|
| 233 |
+
G = nx.lexicographic_product(null, P10)
|
| 234 |
+
assert nx.is_isomorphic(G, null)
|
| 235 |
+
G = nx.lexicographic_product(empty10, null)
|
| 236 |
+
assert nx.is_isomorphic(G, null)
|
| 237 |
+
G = nx.lexicographic_product(K3, null)
|
| 238 |
+
assert nx.is_isomorphic(G, null)
|
| 239 |
+
G = nx.lexicographic_product(K10, null)
|
| 240 |
+
assert nx.is_isomorphic(G, null)
|
| 241 |
+
G = nx.lexicographic_product(P3, null)
|
| 242 |
+
assert nx.is_isomorphic(G, null)
|
| 243 |
+
G = nx.lexicographic_product(P10, null)
|
| 244 |
+
assert nx.is_isomorphic(G, null)
|
| 245 |
+
|
| 246 |
+
|
| 247 |
+
def test_lexicographic_product_size():
|
| 248 |
+
K5 = nx.complete_graph(5)
|
| 249 |
+
P5 = nx.path_graph(5)
|
| 250 |
+
K3 = nx.complete_graph(3)
|
| 251 |
+
G = nx.lexicographic_product(P5, K3)
|
| 252 |
+
assert nx.number_of_nodes(G) == 5 * 3
|
| 253 |
+
G = nx.lexicographic_product(K3, K5)
|
| 254 |
+
assert nx.number_of_nodes(G) == 3 * 5
|
| 255 |
+
|
| 256 |
+
|
| 257 |
+
def test_lexicographic_product_combinations():
|
| 258 |
+
P5 = nx.path_graph(5)
|
| 259 |
+
K3 = nx.complete_graph(3)
|
| 260 |
+
G = nx.lexicographic_product(P5, K3)
|
| 261 |
+
assert nx.number_of_nodes(G) == 5 * 3
|
| 262 |
+
G = nx.lexicographic_product(nx.MultiGraph(P5), K3)
|
| 263 |
+
assert nx.number_of_nodes(G) == 5 * 3
|
| 264 |
+
G = nx.lexicographic_product(P5, nx.MultiGraph(K3))
|
| 265 |
+
assert nx.number_of_nodes(G) == 5 * 3
|
| 266 |
+
G = nx.lexicographic_product(nx.MultiGraph(P5), nx.MultiGraph(K3))
|
| 267 |
+
assert nx.number_of_nodes(G) == 5 * 3
|
| 268 |
+
|
| 269 |
+
# No classic easily found classic results for lexicographic product
|
| 270 |
+
|
| 271 |
+
|
| 272 |
+
def test_lexicographic_product_random():
|
| 273 |
+
G = nx.erdos_renyi_graph(10, 2 / 10.0)
|
| 274 |
+
H = nx.erdos_renyi_graph(10, 2 / 10.0)
|
| 275 |
+
GH = nx.lexicographic_product(G, H)
|
| 276 |
+
|
| 277 |
+
for u_G, u_H in GH.nodes():
|
| 278 |
+
for v_G, v_H in GH.nodes():
|
| 279 |
+
if G.has_edge(u_G, v_G) or (u_G == v_G and H.has_edge(u_H, v_H)):
|
| 280 |
+
assert GH.has_edge((u_G, u_H), (v_G, v_H))
|
| 281 |
+
else:
|
| 282 |
+
assert not GH.has_edge((u_G, u_H), (v_G, v_H))
|
| 283 |
+
|
| 284 |
+
|
| 285 |
+
def test_strong_product_raises():
|
| 286 |
+
with pytest.raises(nx.NetworkXError):
|
| 287 |
+
P = nx.strong_product(nx.DiGraph(), nx.Graph())
|
| 288 |
+
|
| 289 |
+
|
| 290 |
+
def test_strong_product_null():
|
| 291 |
+
null = nx.null_graph()
|
| 292 |
+
empty10 = nx.empty_graph(10)
|
| 293 |
+
K3 = nx.complete_graph(3)
|
| 294 |
+
K10 = nx.complete_graph(10)
|
| 295 |
+
P3 = nx.path_graph(3)
|
| 296 |
+
P10 = nx.path_graph(10)
|
| 297 |
+
# null graph
|
| 298 |
+
G = nx.strong_product(null, null)
|
| 299 |
+
assert nx.is_isomorphic(G, null)
|
| 300 |
+
# null_graph X anything = null_graph and v.v.
|
| 301 |
+
G = nx.strong_product(null, empty10)
|
| 302 |
+
assert nx.is_isomorphic(G, null)
|
| 303 |
+
G = nx.strong_product(null, K3)
|
| 304 |
+
assert nx.is_isomorphic(G, null)
|
| 305 |
+
G = nx.strong_product(null, K10)
|
| 306 |
+
assert nx.is_isomorphic(G, null)
|
| 307 |
+
G = nx.strong_product(null, P3)
|
| 308 |
+
assert nx.is_isomorphic(G, null)
|
| 309 |
+
G = nx.strong_product(null, P10)
|
| 310 |
+
assert nx.is_isomorphic(G, null)
|
| 311 |
+
G = nx.strong_product(empty10, null)
|
| 312 |
+
assert nx.is_isomorphic(G, null)
|
| 313 |
+
G = nx.strong_product(K3, null)
|
| 314 |
+
assert nx.is_isomorphic(G, null)
|
| 315 |
+
G = nx.strong_product(K10, null)
|
| 316 |
+
assert nx.is_isomorphic(G, null)
|
| 317 |
+
G = nx.strong_product(P3, null)
|
| 318 |
+
assert nx.is_isomorphic(G, null)
|
| 319 |
+
G = nx.strong_product(P10, null)
|
| 320 |
+
assert nx.is_isomorphic(G, null)
|
| 321 |
+
|
| 322 |
+
|
| 323 |
+
def test_strong_product_size():
|
| 324 |
+
K5 = nx.complete_graph(5)
|
| 325 |
+
P5 = nx.path_graph(5)
|
| 326 |
+
K3 = nx.complete_graph(3)
|
| 327 |
+
G = nx.strong_product(P5, K3)
|
| 328 |
+
assert nx.number_of_nodes(G) == 5 * 3
|
| 329 |
+
G = nx.strong_product(K3, K5)
|
| 330 |
+
assert nx.number_of_nodes(G) == 3 * 5
|
| 331 |
+
|
| 332 |
+
|
| 333 |
+
def test_strong_product_combinations():
|
| 334 |
+
P5 = nx.path_graph(5)
|
| 335 |
+
K3 = nx.complete_graph(3)
|
| 336 |
+
G = nx.strong_product(P5, K3)
|
| 337 |
+
assert nx.number_of_nodes(G) == 5 * 3
|
| 338 |
+
G = nx.strong_product(nx.MultiGraph(P5), K3)
|
| 339 |
+
assert nx.number_of_nodes(G) == 5 * 3
|
| 340 |
+
G = nx.strong_product(P5, nx.MultiGraph(K3))
|
| 341 |
+
assert nx.number_of_nodes(G) == 5 * 3
|
| 342 |
+
G = nx.strong_product(nx.MultiGraph(P5), nx.MultiGraph(K3))
|
| 343 |
+
assert nx.number_of_nodes(G) == 5 * 3
|
| 344 |
+
|
| 345 |
+
# No classic easily found classic results for strong product
|
| 346 |
+
|
| 347 |
+
|
| 348 |
+
def test_strong_product_random():
|
| 349 |
+
G = nx.erdos_renyi_graph(10, 2 / 10.0)
|
| 350 |
+
H = nx.erdos_renyi_graph(10, 2 / 10.0)
|
| 351 |
+
GH = nx.strong_product(G, H)
|
| 352 |
+
|
| 353 |
+
for u_G, u_H in GH.nodes():
|
| 354 |
+
for v_G, v_H in GH.nodes():
|
| 355 |
+
if (
|
| 356 |
+
(u_G == v_G and H.has_edge(u_H, v_H))
|
| 357 |
+
or (u_H == v_H and G.has_edge(u_G, v_G))
|
| 358 |
+
or (G.has_edge(u_G, v_G) and H.has_edge(u_H, v_H))
|
| 359 |
+
):
|
| 360 |
+
assert GH.has_edge((u_G, u_H), (v_G, v_H))
|
| 361 |
+
else:
|
| 362 |
+
assert not GH.has_edge((u_G, u_H), (v_G, v_H))
|
| 363 |
+
|
| 364 |
+
|
| 365 |
+
def test_graph_power_raises():
|
| 366 |
+
with pytest.raises(nx.NetworkXNotImplemented):
|
| 367 |
+
nx.power(nx.MultiDiGraph(), 2)
|
| 368 |
+
|
| 369 |
+
|
| 370 |
+
def test_graph_power():
|
| 371 |
+
# wikipedia example for graph power
|
| 372 |
+
G = nx.cycle_graph(7)
|
| 373 |
+
G.add_edge(6, 7)
|
| 374 |
+
G.add_edge(7, 8)
|
| 375 |
+
G.add_edge(8, 9)
|
| 376 |
+
G.add_edge(9, 2)
|
| 377 |
+
H = nx.power(G, 2)
|
| 378 |
+
|
| 379 |
+
assert edges_equal(
|
| 380 |
+
list(H.edges()),
|
| 381 |
+
[
|
| 382 |
+
(0, 1),
|
| 383 |
+
(0, 2),
|
| 384 |
+
(0, 5),
|
| 385 |
+
(0, 6),
|
| 386 |
+
(0, 7),
|
| 387 |
+
(1, 9),
|
| 388 |
+
(1, 2),
|
| 389 |
+
(1, 3),
|
| 390 |
+
(1, 6),
|
| 391 |
+
(2, 3),
|
| 392 |
+
(2, 4),
|
| 393 |
+
(2, 8),
|
| 394 |
+
(2, 9),
|
| 395 |
+
(3, 4),
|
| 396 |
+
(3, 5),
|
| 397 |
+
(3, 9),
|
| 398 |
+
(4, 5),
|
| 399 |
+
(4, 6),
|
| 400 |
+
(5, 6),
|
| 401 |
+
(5, 7),
|
| 402 |
+
(6, 7),
|
| 403 |
+
(6, 8),
|
| 404 |
+
(7, 8),
|
| 405 |
+
(7, 9),
|
| 406 |
+
(8, 9),
|
| 407 |
+
],
|
| 408 |
+
)
|
| 409 |
+
|
| 410 |
+
|
| 411 |
+
def test_graph_power_negative():
|
| 412 |
+
with pytest.raises(ValueError):
|
| 413 |
+
nx.power(nx.Graph(), -1)
|
| 414 |
+
|
| 415 |
+
|
| 416 |
+
def test_rooted_product_raises():
|
| 417 |
+
with pytest.raises(nx.NodeNotFound):
|
| 418 |
+
nx.rooted_product(nx.Graph(), nx.path_graph(2), 10)
|
| 419 |
+
|
| 420 |
+
|
| 421 |
+
def test_rooted_product():
|
| 422 |
+
G = nx.cycle_graph(5)
|
| 423 |
+
H = nx.Graph()
|
| 424 |
+
H.add_edges_from([("a", "b"), ("b", "c"), ("b", "d")])
|
| 425 |
+
R = nx.rooted_product(G, H, "a")
|
| 426 |
+
assert len(R) == len(G) * len(H)
|
| 427 |
+
assert R.size() == G.size() + len(G) * H.size()
|
| 428 |
+
|
| 429 |
+
|
| 430 |
+
def test_corona_product():
|
| 431 |
+
G = nx.cycle_graph(3)
|
| 432 |
+
H = nx.path_graph(2)
|
| 433 |
+
C = nx.corona_product(G, H)
|
| 434 |
+
assert len(C) == (len(G) * len(H)) + len(G)
|
| 435 |
+
assert C.size() == G.size() + len(G) * H.size() + len(G) * len(H)
|
| 436 |
+
|
| 437 |
+
|
| 438 |
+
def test_modular_product():
|
| 439 |
+
G = nx.path_graph(3)
|
| 440 |
+
H = nx.path_graph(4)
|
| 441 |
+
M = nx.modular_product(G, H)
|
| 442 |
+
assert len(M) == len(G) * len(H)
|
| 443 |
+
|
| 444 |
+
assert edges_equal(
|
| 445 |
+
list(M.edges()),
|
| 446 |
+
[
|
| 447 |
+
((0, 0), (1, 1)),
|
| 448 |
+
((0, 0), (2, 2)),
|
| 449 |
+
((0, 0), (2, 3)),
|
| 450 |
+
((0, 1), (1, 0)),
|
| 451 |
+
((0, 1), (1, 2)),
|
| 452 |
+
((0, 1), (2, 3)),
|
| 453 |
+
((0, 2), (1, 1)),
|
| 454 |
+
((0, 2), (1, 3)),
|
| 455 |
+
((0, 2), (2, 0)),
|
| 456 |
+
((0, 3), (1, 2)),
|
| 457 |
+
((0, 3), (2, 0)),
|
| 458 |
+
((0, 3), (2, 1)),
|
| 459 |
+
((1, 0), (2, 1)),
|
| 460 |
+
((1, 1), (2, 0)),
|
| 461 |
+
((1, 1), (2, 2)),
|
| 462 |
+
((1, 2), (2, 1)),
|
| 463 |
+
((1, 2), (2, 3)),
|
| 464 |
+
((1, 3), (2, 2)),
|
| 465 |
+
],
|
| 466 |
+
)
|
| 467 |
+
|
| 468 |
+
|
| 469 |
+
def test_modular_product_raises():
|
| 470 |
+
G = nx.Graph([(0, 1), (1, 2), (2, 0)])
|
| 471 |
+
H = nx.Graph([(0, 1), (1, 2), (2, 0)])
|
| 472 |
+
DG = nx.DiGraph([(0, 1), (1, 2), (2, 0)])
|
| 473 |
+
DH = nx.DiGraph([(0, 1), (1, 2), (2, 0)])
|
| 474 |
+
with pytest.raises(nx.NetworkXNotImplemented):
|
| 475 |
+
nx.modular_product(G, DH)
|
| 476 |
+
with pytest.raises(nx.NetworkXNotImplemented):
|
| 477 |
+
nx.modular_product(DG, H)
|
| 478 |
+
with pytest.raises(nx.NetworkXNotImplemented):
|
| 479 |
+
nx.modular_product(DG, DH)
|
| 480 |
+
|
| 481 |
+
MG = nx.MultiGraph([(0, 1), (1, 2), (2, 0), (0, 1)])
|
| 482 |
+
MH = nx.MultiGraph([(0, 1), (1, 2), (2, 0), (0, 1)])
|
| 483 |
+
with pytest.raises(nx.NetworkXNotImplemented):
|
| 484 |
+
nx.modular_product(G, MH)
|
| 485 |
+
with pytest.raises(nx.NetworkXNotImplemented):
|
| 486 |
+
nx.modular_product(MG, H)
|
| 487 |
+
with pytest.raises(nx.NetworkXNotImplemented):
|
| 488 |
+
nx.modular_product(MG, MH)
|
| 489 |
+
with pytest.raises(nx.NetworkXNotImplemented):
|
| 490 |
+
# check multigraph with no multiedges
|
| 491 |
+
nx.modular_product(nx.MultiGraph(G), H)
|
code/LaDi-RL-old-qwen-cod/LaDi-RL-old-qwen-cod/venv/lib64/python3.10/site-packages/networkx/algorithms/operators/tests/test_unary.py
ADDED
|
@@ -0,0 +1,55 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
import pytest
|
| 2 |
+
|
| 3 |
+
import networkx as nx
|
| 4 |
+
|
| 5 |
+
|
| 6 |
+
def test_complement():
|
| 7 |
+
null = nx.null_graph()
|
| 8 |
+
empty1 = nx.empty_graph(1)
|
| 9 |
+
empty10 = nx.empty_graph(10)
|
| 10 |
+
K3 = nx.complete_graph(3)
|
| 11 |
+
K5 = nx.complete_graph(5)
|
| 12 |
+
K10 = nx.complete_graph(10)
|
| 13 |
+
P2 = nx.path_graph(2)
|
| 14 |
+
P3 = nx.path_graph(3)
|
| 15 |
+
P5 = nx.path_graph(5)
|
| 16 |
+
P10 = nx.path_graph(10)
|
| 17 |
+
# complement of the complete graph is empty
|
| 18 |
+
|
| 19 |
+
G = nx.complement(K3)
|
| 20 |
+
assert nx.is_isomorphic(G, nx.empty_graph(3))
|
| 21 |
+
G = nx.complement(K5)
|
| 22 |
+
assert nx.is_isomorphic(G, nx.empty_graph(5))
|
| 23 |
+
# for any G, G=complement(complement(G))
|
| 24 |
+
P3cc = nx.complement(nx.complement(P3))
|
| 25 |
+
assert nx.is_isomorphic(P3, P3cc)
|
| 26 |
+
nullcc = nx.complement(nx.complement(null))
|
| 27 |
+
assert nx.is_isomorphic(null, nullcc)
|
| 28 |
+
b = nx.bull_graph()
|
| 29 |
+
bcc = nx.complement(nx.complement(b))
|
| 30 |
+
assert nx.is_isomorphic(b, bcc)
|
| 31 |
+
|
| 32 |
+
|
| 33 |
+
def test_complement_2():
|
| 34 |
+
G1 = nx.DiGraph()
|
| 35 |
+
G1.add_edge("A", "B")
|
| 36 |
+
G1.add_edge("A", "C")
|
| 37 |
+
G1.add_edge("A", "D")
|
| 38 |
+
G1C = nx.complement(G1)
|
| 39 |
+
assert sorted(G1C.edges()) == [
|
| 40 |
+
("B", "A"),
|
| 41 |
+
("B", "C"),
|
| 42 |
+
("B", "D"),
|
| 43 |
+
("C", "A"),
|
| 44 |
+
("C", "B"),
|
| 45 |
+
("C", "D"),
|
| 46 |
+
("D", "A"),
|
| 47 |
+
("D", "B"),
|
| 48 |
+
("D", "C"),
|
| 49 |
+
]
|
| 50 |
+
|
| 51 |
+
|
| 52 |
+
def test_reverse1():
|
| 53 |
+
# Other tests for reverse are done by the DiGraph and MultiDigraph.
|
| 54 |
+
G1 = nx.Graph()
|
| 55 |
+
pytest.raises(nx.NetworkXError, nx.reverse, G1)
|
code/LaDi-RL-old-qwen-cod/LaDi-RL-old-qwen-cod/venv/lib64/python3.10/site-packages/networkx/algorithms/operators/unary.py
ADDED
|
@@ -0,0 +1,77 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
"""Unary operations on graphs"""
|
| 2 |
+
|
| 3 |
+
import networkx as nx
|
| 4 |
+
|
| 5 |
+
__all__ = ["complement", "reverse"]
|
| 6 |
+
|
| 7 |
+
|
| 8 |
+
@nx._dispatchable(returns_graph=True)
|
| 9 |
+
def complement(G):
|
| 10 |
+
"""Returns the graph complement of G.
|
| 11 |
+
|
| 12 |
+
Parameters
|
| 13 |
+
----------
|
| 14 |
+
G : graph
|
| 15 |
+
A NetworkX graph
|
| 16 |
+
|
| 17 |
+
Returns
|
| 18 |
+
-------
|
| 19 |
+
GC : A new graph.
|
| 20 |
+
|
| 21 |
+
Notes
|
| 22 |
+
-----
|
| 23 |
+
Note that `complement` does not create self-loops and also
|
| 24 |
+
does not produce parallel edges for MultiGraphs.
|
| 25 |
+
|
| 26 |
+
Graph, node, and edge data are not propagated to the new graph.
|
| 27 |
+
|
| 28 |
+
Examples
|
| 29 |
+
--------
|
| 30 |
+
>>> G = nx.Graph([(1, 2), (1, 3), (2, 3), (3, 4), (3, 5)])
|
| 31 |
+
>>> G_complement = nx.complement(G)
|
| 32 |
+
>>> G_complement.edges() # This shows the edges of the complemented graph
|
| 33 |
+
EdgeView([(1, 4), (1, 5), (2, 4), (2, 5), (4, 5)])
|
| 34 |
+
|
| 35 |
+
"""
|
| 36 |
+
R = G.__class__()
|
| 37 |
+
R.add_nodes_from(G)
|
| 38 |
+
R.add_edges_from(
|
| 39 |
+
((n, n2) for n, nbrs in G.adjacency() for n2 in G if n2 not in nbrs if n != n2)
|
| 40 |
+
)
|
| 41 |
+
return R
|
| 42 |
+
|
| 43 |
+
|
| 44 |
+
@nx._dispatchable(returns_graph=True)
|
| 45 |
+
def reverse(G, copy=True):
|
| 46 |
+
"""Returns the reverse directed graph of G.
|
| 47 |
+
|
| 48 |
+
Parameters
|
| 49 |
+
----------
|
| 50 |
+
G : directed graph
|
| 51 |
+
A NetworkX directed graph
|
| 52 |
+
copy : bool
|
| 53 |
+
If True, then a new graph is returned. If False, then the graph is
|
| 54 |
+
reversed in place.
|
| 55 |
+
|
| 56 |
+
Returns
|
| 57 |
+
-------
|
| 58 |
+
H : directed graph
|
| 59 |
+
The reversed G.
|
| 60 |
+
|
| 61 |
+
Raises
|
| 62 |
+
------
|
| 63 |
+
NetworkXError
|
| 64 |
+
If graph is undirected.
|
| 65 |
+
|
| 66 |
+
Examples
|
| 67 |
+
--------
|
| 68 |
+
>>> G = nx.DiGraph([(1, 2), (1, 3), (2, 3), (3, 4), (3, 5)])
|
| 69 |
+
>>> G_reversed = nx.reverse(G)
|
| 70 |
+
>>> G_reversed.edges()
|
| 71 |
+
OutEdgeView([(2, 1), (3, 1), (3, 2), (4, 3), (5, 3)])
|
| 72 |
+
|
| 73 |
+
"""
|
| 74 |
+
if not G.is_directed():
|
| 75 |
+
raise nx.NetworkXError("Cannot reverse an undirected graph.")
|
| 76 |
+
else:
|
| 77 |
+
return G.reverse(copy=copy)
|
code/LaDi-RL-old-qwen-cod/LaDi-RL-old-qwen-cod/venv/lib64/python3.10/site-packages/networkx/algorithms/shortest_paths/__init__.py
ADDED
|
@@ -0,0 +1,5 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
from networkx.algorithms.shortest_paths.generic import *
|
| 2 |
+
from networkx.algorithms.shortest_paths.unweighted import *
|
| 3 |
+
from networkx.algorithms.shortest_paths.weighted import *
|
| 4 |
+
from networkx.algorithms.shortest_paths.astar import *
|
| 5 |
+
from networkx.algorithms.shortest_paths.dense import *
|
code/LaDi-RL-old-qwen-cod/LaDi-RL-old-qwen-cod/venv/lib64/python3.10/site-packages/networkx/algorithms/shortest_paths/astar.py
ADDED
|
@@ -0,0 +1,241 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
"""Shortest paths and path lengths using the A* ("A star") algorithm."""
|
| 2 |
+
|
| 3 |
+
from heapq import heappop, heappush
|
| 4 |
+
from itertools import count
|
| 5 |
+
|
| 6 |
+
import networkx as nx
|
| 7 |
+
from networkx.algorithms.shortest_paths.weighted import _weight_function
|
| 8 |
+
|
| 9 |
+
__all__ = ["astar_path", "astar_path_length"]
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@nx._dispatchable(edge_attrs="weight", preserve_node_attrs="heuristic")
|
| 13 |
+
def astar_path(G, source, target, heuristic=None, weight="weight", *, cutoff=None):
|
| 14 |
+
"""Returns a list of nodes in a shortest path between source and target
|
| 15 |
+
using the A* ("A-star") algorithm.
|
| 16 |
+
|
| 17 |
+
There may be more than one shortest path. This returns only one.
|
| 18 |
+
|
| 19 |
+
Parameters
|
| 20 |
+
----------
|
| 21 |
+
G : NetworkX graph
|
| 22 |
+
|
| 23 |
+
source : node
|
| 24 |
+
Starting node for path
|
| 25 |
+
|
| 26 |
+
target : node
|
| 27 |
+
Ending node for path
|
| 28 |
+
|
| 29 |
+
heuristic : function
|
| 30 |
+
A function to evaluate the estimate of the distance
|
| 31 |
+
from the a node to the target. The function takes
|
| 32 |
+
two nodes arguments and must return a number.
|
| 33 |
+
If the heuristic is inadmissible (if it might
|
| 34 |
+
overestimate the cost of reaching the goal from a node),
|
| 35 |
+
the result may not be a shortest path.
|
| 36 |
+
The algorithm does not support updating heuristic
|
| 37 |
+
values for the same node due to caching the first
|
| 38 |
+
heuristic calculation per node.
|
| 39 |
+
|
| 40 |
+
weight : string or function
|
| 41 |
+
If this is a string, then edge weights will be accessed via the
|
| 42 |
+
edge attribute with this key (that is, the weight of the edge
|
| 43 |
+
joining `u` to `v` will be ``G.edges[u, v][weight]``). If no
|
| 44 |
+
such edge attribute exists, the weight of the edge is assumed to
|
| 45 |
+
be one.
|
| 46 |
+
If this is a function, the weight of an edge is the value
|
| 47 |
+
returned by the function. The function must accept exactly three
|
| 48 |
+
positional arguments: the two endpoints of an edge and the
|
| 49 |
+
dictionary of edge attributes for that edge. The function must
|
| 50 |
+
return a number or None to indicate a hidden edge.
|
| 51 |
+
|
| 52 |
+
cutoff : float, optional
|
| 53 |
+
If this is provided, the search will be bounded to this value. I.e. if
|
| 54 |
+
the evaluation function surpasses this value for a node n, the node will not
|
| 55 |
+
be expanded further and will be ignored. More formally, let h'(n) be the
|
| 56 |
+
heuristic function, and g(n) be the cost of reaching n from the source node. Then,
|
| 57 |
+
if g(n) + h'(n) > cutoff, the node will not be explored further.
|
| 58 |
+
Note that if the heuristic is inadmissible, it is possible that paths
|
| 59 |
+
are ignored even though they satisfy the cutoff.
|
| 60 |
+
|
| 61 |
+
Raises
|
| 62 |
+
------
|
| 63 |
+
NetworkXNoPath
|
| 64 |
+
If no path exists between source and target.
|
| 65 |
+
|
| 66 |
+
Examples
|
| 67 |
+
--------
|
| 68 |
+
>>> G = nx.path_graph(5)
|
| 69 |
+
>>> print(nx.astar_path(G, 0, 4))
|
| 70 |
+
[0, 1, 2, 3, 4]
|
| 71 |
+
>>> G = nx.grid_graph(dim=[3, 3]) # nodes are two-tuples (x,y)
|
| 72 |
+
>>> nx.set_edge_attributes(G, {e: e[1][0] * 2 for e in G.edges()}, "cost")
|
| 73 |
+
>>> def dist(a, b):
|
| 74 |
+
... (x1, y1) = a
|
| 75 |
+
... (x2, y2) = b
|
| 76 |
+
... return ((x1 - x2) ** 2 + (y1 - y2) ** 2) ** 0.5
|
| 77 |
+
>>> print(nx.astar_path(G, (0, 0), (2, 2), heuristic=dist, weight="cost"))
|
| 78 |
+
[(0, 0), (0, 1), (0, 2), (1, 2), (2, 2)]
|
| 79 |
+
|
| 80 |
+
Notes
|
| 81 |
+
-----
|
| 82 |
+
Edge weight attributes must be numerical.
|
| 83 |
+
Distances are calculated as sums of weighted edges traversed.
|
| 84 |
+
|
| 85 |
+
The weight function can be used to hide edges by returning None.
|
| 86 |
+
So ``weight = lambda u, v, d: 1 if d['color']=="red" else None``
|
| 87 |
+
will find the shortest red path.
|
| 88 |
+
|
| 89 |
+
See Also
|
| 90 |
+
--------
|
| 91 |
+
shortest_path, dijkstra_path
|
| 92 |
+
|
| 93 |
+
"""
|
| 94 |
+
if source not in G:
|
| 95 |
+
raise nx.NodeNotFound(f"Source {source} is not in G")
|
| 96 |
+
|
| 97 |
+
if target not in G:
|
| 98 |
+
raise nx.NodeNotFound(f"Target {target} is not in G")
|
| 99 |
+
|
| 100 |
+
if heuristic is None:
|
| 101 |
+
# The default heuristic is h=0 - same as Dijkstra's algorithm
|
| 102 |
+
def heuristic(u, v):
|
| 103 |
+
return 0
|
| 104 |
+
|
| 105 |
+
push = heappush
|
| 106 |
+
pop = heappop
|
| 107 |
+
weight = _weight_function(G, weight)
|
| 108 |
+
|
| 109 |
+
G_succ = G._adj # For speed-up (and works for both directed and undirected graphs)
|
| 110 |
+
|
| 111 |
+
# The queue stores priority, node, cost to reach, and parent.
|
| 112 |
+
# Uses Python heapq to keep in priority order.
|
| 113 |
+
# Add a counter to the queue to prevent the underlying heap from
|
| 114 |
+
# attempting to compare the nodes themselves. The hash breaks ties in the
|
| 115 |
+
# priority and is guaranteed unique for all nodes in the graph.
|
| 116 |
+
c = count()
|
| 117 |
+
queue = [(0, next(c), source, 0, None)]
|
| 118 |
+
|
| 119 |
+
# Maps enqueued nodes to distance of discovered paths and the
|
| 120 |
+
# computed heuristics to target. We avoid computing the heuristics
|
| 121 |
+
# more than once and inserting the node into the queue too many times.
|
| 122 |
+
enqueued = {}
|
| 123 |
+
# Maps explored nodes to parent closest to the source.
|
| 124 |
+
explored = {}
|
| 125 |
+
|
| 126 |
+
while queue:
|
| 127 |
+
# Pop the smallest item from queue.
|
| 128 |
+
_, __, curnode, dist, parent = pop(queue)
|
| 129 |
+
|
| 130 |
+
if curnode == target:
|
| 131 |
+
path = [curnode]
|
| 132 |
+
node = parent
|
| 133 |
+
while node is not None:
|
| 134 |
+
path.append(node)
|
| 135 |
+
node = explored[node]
|
| 136 |
+
path.reverse()
|
| 137 |
+
return path
|
| 138 |
+
|
| 139 |
+
if curnode in explored:
|
| 140 |
+
# Do not override the parent of starting node
|
| 141 |
+
if explored[curnode] is None:
|
| 142 |
+
continue
|
| 143 |
+
|
| 144 |
+
# Skip bad paths that were enqueued before finding a better one
|
| 145 |
+
qcost, h = enqueued[curnode]
|
| 146 |
+
if qcost < dist:
|
| 147 |
+
continue
|
| 148 |
+
|
| 149 |
+
explored[curnode] = parent
|
| 150 |
+
|
| 151 |
+
for neighbor, w in G_succ[curnode].items():
|
| 152 |
+
cost = weight(curnode, neighbor, w)
|
| 153 |
+
if cost is None:
|
| 154 |
+
continue
|
| 155 |
+
ncost = dist + cost
|
| 156 |
+
if neighbor in enqueued:
|
| 157 |
+
qcost, h = enqueued[neighbor]
|
| 158 |
+
# if qcost <= ncost, a less costly path from the
|
| 159 |
+
# neighbor to the source was already determined.
|
| 160 |
+
# Therefore, we won't attempt to push this neighbor
|
| 161 |
+
# to the queue
|
| 162 |
+
if qcost <= ncost:
|
| 163 |
+
continue
|
| 164 |
+
else:
|
| 165 |
+
h = heuristic(neighbor, target)
|
| 166 |
+
|
| 167 |
+
if cutoff and ncost + h > cutoff:
|
| 168 |
+
continue
|
| 169 |
+
|
| 170 |
+
enqueued[neighbor] = ncost, h
|
| 171 |
+
push(queue, (ncost + h, next(c), neighbor, ncost, curnode))
|
| 172 |
+
|
| 173 |
+
raise nx.NetworkXNoPath(f"Node {target} not reachable from {source}")
|
| 174 |
+
|
| 175 |
+
|
| 176 |
+
@nx._dispatchable(edge_attrs="weight", preserve_node_attrs="heuristic")
|
| 177 |
+
def astar_path_length(
|
| 178 |
+
G, source, target, heuristic=None, weight="weight", *, cutoff=None
|
| 179 |
+
):
|
| 180 |
+
"""Returns the length of the shortest path between source and target using
|
| 181 |
+
the A* ("A-star") algorithm.
|
| 182 |
+
|
| 183 |
+
Parameters
|
| 184 |
+
----------
|
| 185 |
+
G : NetworkX graph
|
| 186 |
+
|
| 187 |
+
source : node
|
| 188 |
+
Starting node for path
|
| 189 |
+
|
| 190 |
+
target : node
|
| 191 |
+
Ending node for path
|
| 192 |
+
|
| 193 |
+
heuristic : function
|
| 194 |
+
A function to evaluate the estimate of the distance
|
| 195 |
+
from the a node to the target. The function takes
|
| 196 |
+
two nodes arguments and must return a number.
|
| 197 |
+
If the heuristic is inadmissible (if it might
|
| 198 |
+
overestimate the cost of reaching the goal from a node),
|
| 199 |
+
the result may not be a shortest path.
|
| 200 |
+
The algorithm does not support updating heuristic
|
| 201 |
+
values for the same node due to caching the first
|
| 202 |
+
heuristic calculation per node.
|
| 203 |
+
|
| 204 |
+
weight : string or function
|
| 205 |
+
If this is a string, then edge weights will be accessed via the
|
| 206 |
+
edge attribute with this key (that is, the weight of the edge
|
| 207 |
+
joining `u` to `v` will be ``G.edges[u, v][weight]``). If no
|
| 208 |
+
such edge attribute exists, the weight of the edge is assumed to
|
| 209 |
+
be one.
|
| 210 |
+
If this is a function, the weight of an edge is the value
|
| 211 |
+
returned by the function. The function must accept exactly three
|
| 212 |
+
positional arguments: the two endpoints of an edge and the
|
| 213 |
+
dictionary of edge attributes for that edge. The function must
|
| 214 |
+
return a number or None to indicate a hidden edge.
|
| 215 |
+
|
| 216 |
+
cutoff : float, optional
|
| 217 |
+
If this is provided, the search will be bounded to this value. I.e. if
|
| 218 |
+
the evaluation function surpasses this value for a node n, the node will not
|
| 219 |
+
be expanded further and will be ignored. More formally, let h'(n) be the
|
| 220 |
+
heuristic function, and g(n) be the cost of reaching n from the source node. Then,
|
| 221 |
+
if g(n) + h'(n) > cutoff, the node will not be explored further.
|
| 222 |
+
Note that if the heuristic is inadmissible, it is possible that paths
|
| 223 |
+
are ignored even though they satisfy the cutoff.
|
| 224 |
+
|
| 225 |
+
Raises
|
| 226 |
+
------
|
| 227 |
+
NetworkXNoPath
|
| 228 |
+
If no path exists between source and target.
|
| 229 |
+
|
| 230 |
+
See Also
|
| 231 |
+
--------
|
| 232 |
+
astar_path
|
| 233 |
+
|
| 234 |
+
"""
|
| 235 |
+
if source not in G or target not in G:
|
| 236 |
+
msg = f"Either source {source} or target {target} is not in G"
|
| 237 |
+
raise nx.NodeNotFound(msg)
|
| 238 |
+
|
| 239 |
+
weight = _weight_function(G, weight)
|
| 240 |
+
path = astar_path(G, source, target, heuristic, weight, cutoff=cutoff)
|
| 241 |
+
return sum(weight(u, v, G[u][v]) for u, v in zip(path[:-1], path[1:]))
|
code/LaDi-RL-old-qwen-cod/LaDi-RL-old-qwen-cod/venv/lib64/python3.10/site-packages/networkx/algorithms/shortest_paths/dense.py
ADDED
|
@@ -0,0 +1,260 @@
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
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|
|
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|
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|
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|
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|
|
|
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|
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|
|
|
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|
|
|
|
|
|
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|
|
|
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|
|
|
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|
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|
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|
|
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|
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|
|
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|
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|
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|
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|
|
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|
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|
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|
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|
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|
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|
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|
|
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|
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|
|
|
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|
|
|
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|
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|
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|
|
|
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|
|
|
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|
|
|
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|
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|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
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|
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|
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|
|
|
|
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|
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|
|
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|
|
|
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|
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|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
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|
|
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|
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|
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|
|
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|
|
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|
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|
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|
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|
|
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|
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|
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|
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|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
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|
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|
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|
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|
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|
|
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|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
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|
|
|
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|
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|
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|
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|
|
|
|
|
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|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
"""Floyd-Warshall algorithm for shortest paths."""
|
| 2 |
+
|
| 3 |
+
import networkx as nx
|
| 4 |
+
|
| 5 |
+
__all__ = [
|
| 6 |
+
"floyd_warshall",
|
| 7 |
+
"floyd_warshall_predecessor_and_distance",
|
| 8 |
+
"reconstruct_path",
|
| 9 |
+
"floyd_warshall_numpy",
|
| 10 |
+
]
|
| 11 |
+
|
| 12 |
+
|
| 13 |
+
@nx._dispatchable(edge_attrs="weight")
|
| 14 |
+
def floyd_warshall_numpy(G, nodelist=None, weight="weight"):
|
| 15 |
+
"""Find all-pairs shortest path lengths using Floyd's algorithm.
|
| 16 |
+
|
| 17 |
+
This algorithm for finding shortest paths takes advantage of
|
| 18 |
+
matrix representations of a graph and works well for dense
|
| 19 |
+
graphs where all-pairs shortest path lengths are desired.
|
| 20 |
+
The results are returned as a NumPy array, distance[i, j],
|
| 21 |
+
where i and j are the indexes of two nodes in nodelist.
|
| 22 |
+
The entry distance[i, j] is the distance along a shortest
|
| 23 |
+
path from i to j. If no path exists the distance is Inf.
|
| 24 |
+
|
| 25 |
+
Parameters
|
| 26 |
+
----------
|
| 27 |
+
G : NetworkX graph
|
| 28 |
+
|
| 29 |
+
nodelist : list, optional (default=G.nodes)
|
| 30 |
+
The rows and columns are ordered by the nodes in nodelist.
|
| 31 |
+
If nodelist is None then the ordering is produced by G.nodes.
|
| 32 |
+
Nodelist should include all nodes in G.
|
| 33 |
+
|
| 34 |
+
weight: string, optional (default='weight')
|
| 35 |
+
Edge data key corresponding to the edge weight.
|
| 36 |
+
|
| 37 |
+
Returns
|
| 38 |
+
-------
|
| 39 |
+
distance : 2D numpy.ndarray
|
| 40 |
+
A numpy array of shortest path distances between nodes.
|
| 41 |
+
If there is no path between two nodes the value is Inf.
|
| 42 |
+
|
| 43 |
+
Examples
|
| 44 |
+
--------
|
| 45 |
+
>>> G = nx.DiGraph()
|
| 46 |
+
>>> G.add_weighted_edges_from(
|
| 47 |
+
... [(0, 1, 5), (1, 2, 2), (2, 3, -3), (1, 3, 10), (3, 2, 8)]
|
| 48 |
+
... )
|
| 49 |
+
>>> nx.floyd_warshall_numpy(G)
|
| 50 |
+
array([[ 0., 5., 7., 4.],
|
| 51 |
+
[inf, 0., 2., -1.],
|
| 52 |
+
[inf, inf, 0., -3.],
|
| 53 |
+
[inf, inf, 8., 0.]])
|
| 54 |
+
|
| 55 |
+
Notes
|
| 56 |
+
-----
|
| 57 |
+
Floyd's algorithm is appropriate for finding shortest paths in
|
| 58 |
+
dense graphs or graphs with negative weights when Dijkstra's
|
| 59 |
+
algorithm fails. This algorithm can still fail if there are negative
|
| 60 |
+
cycles. It has running time $O(n^3)$ with running space of $O(n^2)$.
|
| 61 |
+
|
| 62 |
+
Raises
|
| 63 |
+
------
|
| 64 |
+
NetworkXError
|
| 65 |
+
If nodelist is not a list of the nodes in G.
|
| 66 |
+
"""
|
| 67 |
+
import numpy as np
|
| 68 |
+
|
| 69 |
+
if nodelist is not None:
|
| 70 |
+
if not (len(nodelist) == len(G) == len(set(nodelist))):
|
| 71 |
+
raise nx.NetworkXError(
|
| 72 |
+
"nodelist must contain every node in G with no repeats."
|
| 73 |
+
"If you wanted a subgraph of G use G.subgraph(nodelist)"
|
| 74 |
+
)
|
| 75 |
+
|
| 76 |
+
# To handle cases when an edge has weight=0, we must make sure that
|
| 77 |
+
# nonedges are not given the value 0 as well.
|
| 78 |
+
A = nx.to_numpy_array(
|
| 79 |
+
G, nodelist, multigraph_weight=min, weight=weight, nonedge=np.inf
|
| 80 |
+
)
|
| 81 |
+
n, m = A.shape
|
| 82 |
+
np.fill_diagonal(A, 0) # diagonal elements should be zero
|
| 83 |
+
for i in range(n):
|
| 84 |
+
# The second term has the same shape as A due to broadcasting
|
| 85 |
+
A = np.minimum(A, A[i, :][np.newaxis, :] + A[:, i][:, np.newaxis])
|
| 86 |
+
return A
|
| 87 |
+
|
| 88 |
+
|
| 89 |
+
@nx._dispatchable(edge_attrs="weight")
|
| 90 |
+
def floyd_warshall_predecessor_and_distance(G, weight="weight"):
|
| 91 |
+
"""Find all-pairs shortest path lengths using Floyd's algorithm.
|
| 92 |
+
|
| 93 |
+
Parameters
|
| 94 |
+
----------
|
| 95 |
+
G : NetworkX graph
|
| 96 |
+
|
| 97 |
+
weight: string, optional (default= 'weight')
|
| 98 |
+
Edge data key corresponding to the edge weight.
|
| 99 |
+
|
| 100 |
+
Returns
|
| 101 |
+
-------
|
| 102 |
+
predecessor,distance : dictionaries
|
| 103 |
+
Dictionaries, keyed by source and target, of predecessors and distances
|
| 104 |
+
in the shortest path.
|
| 105 |
+
|
| 106 |
+
Examples
|
| 107 |
+
--------
|
| 108 |
+
>>> G = nx.DiGraph()
|
| 109 |
+
>>> G.add_weighted_edges_from(
|
| 110 |
+
... [
|
| 111 |
+
... ("s", "u", 10),
|
| 112 |
+
... ("s", "x", 5),
|
| 113 |
+
... ("u", "v", 1),
|
| 114 |
+
... ("u", "x", 2),
|
| 115 |
+
... ("v", "y", 1),
|
| 116 |
+
... ("x", "u", 3),
|
| 117 |
+
... ("x", "v", 5),
|
| 118 |
+
... ("x", "y", 2),
|
| 119 |
+
... ("y", "s", 7),
|
| 120 |
+
... ("y", "v", 6),
|
| 121 |
+
... ]
|
| 122 |
+
... )
|
| 123 |
+
>>> predecessors, _ = nx.floyd_warshall_predecessor_and_distance(G)
|
| 124 |
+
>>> print(nx.reconstruct_path("s", "v", predecessors))
|
| 125 |
+
['s', 'x', 'u', 'v']
|
| 126 |
+
|
| 127 |
+
Notes
|
| 128 |
+
-----
|
| 129 |
+
Floyd's algorithm is appropriate for finding shortest paths
|
| 130 |
+
in dense graphs or graphs with negative weights when Dijkstra's algorithm
|
| 131 |
+
fails. This algorithm can still fail if there are negative cycles.
|
| 132 |
+
It has running time $O(n^3)$ with running space of $O(n^2)$.
|
| 133 |
+
|
| 134 |
+
See Also
|
| 135 |
+
--------
|
| 136 |
+
floyd_warshall
|
| 137 |
+
floyd_warshall_numpy
|
| 138 |
+
all_pairs_shortest_path
|
| 139 |
+
all_pairs_shortest_path_length
|
| 140 |
+
"""
|
| 141 |
+
from collections import defaultdict
|
| 142 |
+
|
| 143 |
+
# dictionary-of-dictionaries representation for dist and pred
|
| 144 |
+
# use some defaultdict magick here
|
| 145 |
+
# for dist the default is the floating point inf value
|
| 146 |
+
dist = defaultdict(lambda: defaultdict(lambda: float("inf")))
|
| 147 |
+
for u in G:
|
| 148 |
+
dist[u][u] = 0
|
| 149 |
+
pred = defaultdict(dict)
|
| 150 |
+
# initialize path distance dictionary to be the adjacency matrix
|
| 151 |
+
# also set the distance to self to 0 (zero diagonal)
|
| 152 |
+
undirected = not G.is_directed()
|
| 153 |
+
for u, v, d in G.edges(data=True):
|
| 154 |
+
e_weight = d.get(weight, 1.0)
|
| 155 |
+
dist[u][v] = min(e_weight, dist[u][v])
|
| 156 |
+
pred[u][v] = u
|
| 157 |
+
if undirected:
|
| 158 |
+
dist[v][u] = min(e_weight, dist[v][u])
|
| 159 |
+
pred[v][u] = v
|
| 160 |
+
for w in G:
|
| 161 |
+
dist_w = dist[w] # save recomputation
|
| 162 |
+
for u in G:
|
| 163 |
+
dist_u = dist[u] # save recomputation
|
| 164 |
+
for v in G:
|
| 165 |
+
d = dist_u[w] + dist_w[v]
|
| 166 |
+
if dist_u[v] > d:
|
| 167 |
+
dist_u[v] = d
|
| 168 |
+
pred[u][v] = pred[w][v]
|
| 169 |
+
return dict(pred), dict(dist)
|
| 170 |
+
|
| 171 |
+
|
| 172 |
+
@nx._dispatchable(graphs=None)
|
| 173 |
+
def reconstruct_path(source, target, predecessors):
|
| 174 |
+
"""Reconstruct a path from source to target using the predecessors
|
| 175 |
+
dict as returned by floyd_warshall_predecessor_and_distance
|
| 176 |
+
|
| 177 |
+
Parameters
|
| 178 |
+
----------
|
| 179 |
+
source : node
|
| 180 |
+
Starting node for path
|
| 181 |
+
|
| 182 |
+
target : node
|
| 183 |
+
Ending node for path
|
| 184 |
+
|
| 185 |
+
predecessors: dictionary
|
| 186 |
+
Dictionary, keyed by source and target, of predecessors in the
|
| 187 |
+
shortest path, as returned by floyd_warshall_predecessor_and_distance
|
| 188 |
+
|
| 189 |
+
Returns
|
| 190 |
+
-------
|
| 191 |
+
path : list
|
| 192 |
+
A list of nodes containing the shortest path from source to target
|
| 193 |
+
|
| 194 |
+
If source and target are the same, an empty list is returned
|
| 195 |
+
|
| 196 |
+
Notes
|
| 197 |
+
-----
|
| 198 |
+
This function is meant to give more applicability to the
|
| 199 |
+
floyd_warshall_predecessor_and_distance function
|
| 200 |
+
|
| 201 |
+
See Also
|
| 202 |
+
--------
|
| 203 |
+
floyd_warshall_predecessor_and_distance
|
| 204 |
+
"""
|
| 205 |
+
if source == target:
|
| 206 |
+
return []
|
| 207 |
+
prev = predecessors[source]
|
| 208 |
+
curr = prev[target]
|
| 209 |
+
path = [target, curr]
|
| 210 |
+
while curr != source:
|
| 211 |
+
curr = prev[curr]
|
| 212 |
+
path.append(curr)
|
| 213 |
+
return list(reversed(path))
|
| 214 |
+
|
| 215 |
+
|
| 216 |
+
@nx._dispatchable(edge_attrs="weight")
|
| 217 |
+
def floyd_warshall(G, weight="weight"):
|
| 218 |
+
"""Find all-pairs shortest path lengths using Floyd's algorithm.
|
| 219 |
+
|
| 220 |
+
Parameters
|
| 221 |
+
----------
|
| 222 |
+
G : NetworkX graph
|
| 223 |
+
|
| 224 |
+
weight: string, optional (default= 'weight')
|
| 225 |
+
Edge data key corresponding to the edge weight.
|
| 226 |
+
|
| 227 |
+
|
| 228 |
+
Returns
|
| 229 |
+
-------
|
| 230 |
+
distance : dict
|
| 231 |
+
A dictionary, keyed by source and target, of shortest paths distances
|
| 232 |
+
between nodes.
|
| 233 |
+
|
| 234 |
+
Examples
|
| 235 |
+
--------
|
| 236 |
+
>>> G = nx.DiGraph()
|
| 237 |
+
>>> G.add_weighted_edges_from(
|
| 238 |
+
... [(0, 1, 5), (1, 2, 2), (2, 3, -3), (1, 3, 10), (3, 2, 8)]
|
| 239 |
+
... )
|
| 240 |
+
>>> fw = nx.floyd_warshall(G, weight="weight")
|
| 241 |
+
>>> results = {a: dict(b) for a, b in fw.items()}
|
| 242 |
+
>>> print(results)
|
| 243 |
+
{0: {0: 0, 1: 5, 2: 7, 3: 4}, 1: {1: 0, 2: 2, 3: -1, 0: inf}, 2: {2: 0, 3: -3, 0: inf, 1: inf}, 3: {3: 0, 2: 8, 0: inf, 1: inf}}
|
| 244 |
+
|
| 245 |
+
Notes
|
| 246 |
+
-----
|
| 247 |
+
Floyd's algorithm is appropriate for finding shortest paths
|
| 248 |
+
in dense graphs or graphs with negative weights when Dijkstra's algorithm
|
| 249 |
+
fails. This algorithm can still fail if there are negative cycles.
|
| 250 |
+
It has running time $O(n^3)$ with running space of $O(n^2)$.
|
| 251 |
+
|
| 252 |
+
See Also
|
| 253 |
+
--------
|
| 254 |
+
floyd_warshall_predecessor_and_distance
|
| 255 |
+
floyd_warshall_numpy
|
| 256 |
+
all_pairs_shortest_path
|
| 257 |
+
all_pairs_shortest_path_length
|
| 258 |
+
"""
|
| 259 |
+
# could make this its own function to reduce memory costs
|
| 260 |
+
return floyd_warshall_predecessor_and_distance(G, weight=weight)[1]
|
code/LaDi-RL-old-qwen-cod/LaDi-RL-old-qwen-cod/venv/lib64/python3.10/site-packages/networkx/algorithms/shortest_paths/generic.py
ADDED
|
@@ -0,0 +1,730 @@
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|
| 1 |
+
"""
|
| 2 |
+
Compute the shortest paths and path lengths between nodes in the graph.
|
| 3 |
+
|
| 4 |
+
These algorithms work with undirected and directed graphs.
|
| 5 |
+
|
| 6 |
+
"""
|
| 7 |
+
|
| 8 |
+
import warnings
|
| 9 |
+
|
| 10 |
+
import networkx as nx
|
| 11 |
+
|
| 12 |
+
__all__ = [
|
| 13 |
+
"shortest_path",
|
| 14 |
+
"all_shortest_paths",
|
| 15 |
+
"single_source_all_shortest_paths",
|
| 16 |
+
"all_pairs_all_shortest_paths",
|
| 17 |
+
"shortest_path_length",
|
| 18 |
+
"average_shortest_path_length",
|
| 19 |
+
"has_path",
|
| 20 |
+
]
|
| 21 |
+
|
| 22 |
+
|
| 23 |
+
@nx._dispatchable
|
| 24 |
+
def has_path(G, source, target):
|
| 25 |
+
"""Returns *True* if *G* has a path from *source* to *target*.
|
| 26 |
+
|
| 27 |
+
Parameters
|
| 28 |
+
----------
|
| 29 |
+
G : NetworkX graph
|
| 30 |
+
|
| 31 |
+
source : node
|
| 32 |
+
Starting node for path
|
| 33 |
+
|
| 34 |
+
target : node
|
| 35 |
+
Ending node for path
|
| 36 |
+
"""
|
| 37 |
+
try:
|
| 38 |
+
nx.shortest_path(G, source, target)
|
| 39 |
+
except nx.NetworkXNoPath:
|
| 40 |
+
return False
|
| 41 |
+
return True
|
| 42 |
+
|
| 43 |
+
|
| 44 |
+
@nx._dispatchable(edge_attrs="weight")
|
| 45 |
+
def shortest_path(G, source=None, target=None, weight=None, method="dijkstra"):
|
| 46 |
+
"""Compute shortest paths in the graph.
|
| 47 |
+
|
| 48 |
+
Parameters
|
| 49 |
+
----------
|
| 50 |
+
G : NetworkX graph
|
| 51 |
+
|
| 52 |
+
source : node, optional
|
| 53 |
+
Starting node for path. If not specified, compute shortest
|
| 54 |
+
paths for each possible starting node.
|
| 55 |
+
|
| 56 |
+
target : node, optional
|
| 57 |
+
Ending node for path. If not specified, compute shortest
|
| 58 |
+
paths to all possible nodes.
|
| 59 |
+
|
| 60 |
+
weight : None, string or function, optional (default = None)
|
| 61 |
+
If None, every edge has weight/distance/cost 1.
|
| 62 |
+
If a string, use this edge attribute as the edge weight.
|
| 63 |
+
Any edge attribute not present defaults to 1.
|
| 64 |
+
If this is a function, the weight of an edge is the value
|
| 65 |
+
returned by the function. The function must accept exactly
|
| 66 |
+
three positional arguments: the two endpoints of an edge and
|
| 67 |
+
the dictionary of edge attributes for that edge.
|
| 68 |
+
The function must return a number.
|
| 69 |
+
|
| 70 |
+
method : string, optional (default = 'dijkstra')
|
| 71 |
+
The algorithm to use to compute the path.
|
| 72 |
+
Supported options: 'dijkstra', 'bellman-ford'.
|
| 73 |
+
Other inputs produce a ValueError.
|
| 74 |
+
If `weight` is None, unweighted graph methods are used, and this
|
| 75 |
+
suggestion is ignored.
|
| 76 |
+
|
| 77 |
+
Returns
|
| 78 |
+
-------
|
| 79 |
+
path: list or dictionary
|
| 80 |
+
All returned paths include both the source and target in the path.
|
| 81 |
+
|
| 82 |
+
If the source and target are both specified, return a single list
|
| 83 |
+
of nodes in a shortest path from the source to the target.
|
| 84 |
+
|
| 85 |
+
If only the source is specified, return a dictionary keyed by
|
| 86 |
+
targets with a list of nodes in a shortest path from the source
|
| 87 |
+
to one of the targets.
|
| 88 |
+
|
| 89 |
+
If only the target is specified, return a dictionary keyed by
|
| 90 |
+
sources with a list of nodes in a shortest path from one of the
|
| 91 |
+
sources to the target.
|
| 92 |
+
|
| 93 |
+
If neither the source nor target are specified return a dictionary
|
| 94 |
+
of dictionaries with path[source][target]=[list of nodes in path].
|
| 95 |
+
|
| 96 |
+
Raises
|
| 97 |
+
------
|
| 98 |
+
NodeNotFound
|
| 99 |
+
If `source` is not in `G`.
|
| 100 |
+
|
| 101 |
+
ValueError
|
| 102 |
+
If `method` is not among the supported options.
|
| 103 |
+
|
| 104 |
+
Examples
|
| 105 |
+
--------
|
| 106 |
+
>>> G = nx.path_graph(5)
|
| 107 |
+
>>> print(nx.shortest_path(G, source=0, target=4))
|
| 108 |
+
[0, 1, 2, 3, 4]
|
| 109 |
+
>>> p = nx.shortest_path(G, source=0) # target not specified
|
| 110 |
+
>>> p[3] # shortest path from source=0 to target=3
|
| 111 |
+
[0, 1, 2, 3]
|
| 112 |
+
>>> p = nx.shortest_path(G, target=4) # source not specified
|
| 113 |
+
>>> p[1] # shortest path from source=1 to target=4
|
| 114 |
+
[1, 2, 3, 4]
|
| 115 |
+
>>> p = dict(nx.shortest_path(G)) # source, target not specified
|
| 116 |
+
>>> p[2][4] # shortest path from source=2 to target=4
|
| 117 |
+
[2, 3, 4]
|
| 118 |
+
|
| 119 |
+
Notes
|
| 120 |
+
-----
|
| 121 |
+
There may be more than one shortest path between a source and target.
|
| 122 |
+
This returns only one of them.
|
| 123 |
+
|
| 124 |
+
See Also
|
| 125 |
+
--------
|
| 126 |
+
all_pairs_shortest_path
|
| 127 |
+
all_pairs_dijkstra_path
|
| 128 |
+
all_pairs_bellman_ford_path
|
| 129 |
+
single_source_shortest_path
|
| 130 |
+
single_source_dijkstra_path
|
| 131 |
+
single_source_bellman_ford_path
|
| 132 |
+
"""
|
| 133 |
+
if method not in ("dijkstra", "bellman-ford"):
|
| 134 |
+
# so we don't need to check in each branch later
|
| 135 |
+
raise ValueError(f"method not supported: {method}")
|
| 136 |
+
method = "unweighted" if weight is None else method
|
| 137 |
+
if source is None:
|
| 138 |
+
if target is None:
|
| 139 |
+
warnings.warn(
|
| 140 |
+
(
|
| 141 |
+
"\n\nshortest_path will return an iterator that yields\n"
|
| 142 |
+
"(node, path) pairs instead of a dictionary when source\n"
|
| 143 |
+
"and target are unspecified beginning in version 3.5\n\n"
|
| 144 |
+
"To keep the current behavior, use:\n\n"
|
| 145 |
+
"\tdict(nx.shortest_path(G))"
|
| 146 |
+
),
|
| 147 |
+
FutureWarning,
|
| 148 |
+
stacklevel=3,
|
| 149 |
+
)
|
| 150 |
+
|
| 151 |
+
# Find paths between all pairs.
|
| 152 |
+
if method == "unweighted":
|
| 153 |
+
paths = dict(nx.all_pairs_shortest_path(G))
|
| 154 |
+
elif method == "dijkstra":
|
| 155 |
+
paths = dict(nx.all_pairs_dijkstra_path(G, weight=weight))
|
| 156 |
+
else: # method == 'bellman-ford':
|
| 157 |
+
paths = dict(nx.all_pairs_bellman_ford_path(G, weight=weight))
|
| 158 |
+
else:
|
| 159 |
+
# Find paths from all nodes co-accessible to the target.
|
| 160 |
+
if G.is_directed():
|
| 161 |
+
G = G.reverse(copy=False)
|
| 162 |
+
if method == "unweighted":
|
| 163 |
+
paths = nx.single_source_shortest_path(G, target)
|
| 164 |
+
elif method == "dijkstra":
|
| 165 |
+
paths = nx.single_source_dijkstra_path(G, target, weight=weight)
|
| 166 |
+
else: # method == 'bellman-ford':
|
| 167 |
+
paths = nx.single_source_bellman_ford_path(G, target, weight=weight)
|
| 168 |
+
# Now flip the paths so they go from a source to the target.
|
| 169 |
+
for target in paths:
|
| 170 |
+
paths[target] = list(reversed(paths[target]))
|
| 171 |
+
else:
|
| 172 |
+
if target is None:
|
| 173 |
+
# Find paths to all nodes accessible from the source.
|
| 174 |
+
if method == "unweighted":
|
| 175 |
+
paths = nx.single_source_shortest_path(G, source)
|
| 176 |
+
elif method == "dijkstra":
|
| 177 |
+
paths = nx.single_source_dijkstra_path(G, source, weight=weight)
|
| 178 |
+
else: # method == 'bellman-ford':
|
| 179 |
+
paths = nx.single_source_bellman_ford_path(G, source, weight=weight)
|
| 180 |
+
else:
|
| 181 |
+
# Find shortest source-target path.
|
| 182 |
+
if method == "unweighted":
|
| 183 |
+
paths = nx.bidirectional_shortest_path(G, source, target)
|
| 184 |
+
elif method == "dijkstra":
|
| 185 |
+
_, paths = nx.bidirectional_dijkstra(G, source, target, weight)
|
| 186 |
+
else: # method == 'bellman-ford':
|
| 187 |
+
paths = nx.bellman_ford_path(G, source, target, weight)
|
| 188 |
+
return paths
|
| 189 |
+
|
| 190 |
+
|
| 191 |
+
@nx._dispatchable(edge_attrs="weight")
|
| 192 |
+
def shortest_path_length(G, source=None, target=None, weight=None, method="dijkstra"):
|
| 193 |
+
"""Compute shortest path lengths in the graph.
|
| 194 |
+
|
| 195 |
+
Parameters
|
| 196 |
+
----------
|
| 197 |
+
G : NetworkX graph
|
| 198 |
+
|
| 199 |
+
source : node, optional
|
| 200 |
+
Starting node for path.
|
| 201 |
+
If not specified, compute shortest path lengths using all nodes as
|
| 202 |
+
source nodes.
|
| 203 |
+
|
| 204 |
+
target : node, optional
|
| 205 |
+
Ending node for path.
|
| 206 |
+
If not specified, compute shortest path lengths using all nodes as
|
| 207 |
+
target nodes.
|
| 208 |
+
|
| 209 |
+
weight : None, string or function, optional (default = None)
|
| 210 |
+
If None, every edge has weight/distance/cost 1.
|
| 211 |
+
If a string, use this edge attribute as the edge weight.
|
| 212 |
+
Any edge attribute not present defaults to 1.
|
| 213 |
+
If this is a function, the weight of an edge is the value
|
| 214 |
+
returned by the function. The function must accept exactly
|
| 215 |
+
three positional arguments: the two endpoints of an edge and
|
| 216 |
+
the dictionary of edge attributes for that edge.
|
| 217 |
+
The function must return a number.
|
| 218 |
+
|
| 219 |
+
method : string, optional (default = 'dijkstra')
|
| 220 |
+
The algorithm to use to compute the path length.
|
| 221 |
+
Supported options: 'dijkstra', 'bellman-ford'.
|
| 222 |
+
Other inputs produce a ValueError.
|
| 223 |
+
If `weight` is None, unweighted graph methods are used, and this
|
| 224 |
+
suggestion is ignored.
|
| 225 |
+
|
| 226 |
+
Returns
|
| 227 |
+
-------
|
| 228 |
+
length: number or iterator
|
| 229 |
+
If the source and target are both specified, return the length of
|
| 230 |
+
the shortest path from the source to the target.
|
| 231 |
+
|
| 232 |
+
If only the source is specified, return a dict keyed by target
|
| 233 |
+
to the shortest path length from the source to that target.
|
| 234 |
+
|
| 235 |
+
If only the target is specified, return a dict keyed by source
|
| 236 |
+
to the shortest path length from that source to the target.
|
| 237 |
+
|
| 238 |
+
If neither the source nor target are specified, return an iterator
|
| 239 |
+
over (source, dictionary) where dictionary is keyed by target to
|
| 240 |
+
shortest path length from source to that target.
|
| 241 |
+
|
| 242 |
+
Raises
|
| 243 |
+
------
|
| 244 |
+
NodeNotFound
|
| 245 |
+
If `source` is not in `G`.
|
| 246 |
+
|
| 247 |
+
NetworkXNoPath
|
| 248 |
+
If no path exists between source and target.
|
| 249 |
+
|
| 250 |
+
ValueError
|
| 251 |
+
If `method` is not among the supported options.
|
| 252 |
+
|
| 253 |
+
Examples
|
| 254 |
+
--------
|
| 255 |
+
>>> G = nx.path_graph(5)
|
| 256 |
+
>>> nx.shortest_path_length(G, source=0, target=4)
|
| 257 |
+
4
|
| 258 |
+
>>> p = nx.shortest_path_length(G, source=0) # target not specified
|
| 259 |
+
>>> p[4]
|
| 260 |
+
4
|
| 261 |
+
>>> p = nx.shortest_path_length(G, target=4) # source not specified
|
| 262 |
+
>>> p[0]
|
| 263 |
+
4
|
| 264 |
+
>>> p = dict(nx.shortest_path_length(G)) # source,target not specified
|
| 265 |
+
>>> p[0][4]
|
| 266 |
+
4
|
| 267 |
+
|
| 268 |
+
Notes
|
| 269 |
+
-----
|
| 270 |
+
The length of the path is always 1 less than the number of nodes involved
|
| 271 |
+
in the path since the length measures the number of edges followed.
|
| 272 |
+
|
| 273 |
+
For digraphs this returns the shortest directed path length. To find path
|
| 274 |
+
lengths in the reverse direction use G.reverse(copy=False) first to flip
|
| 275 |
+
the edge orientation.
|
| 276 |
+
|
| 277 |
+
See Also
|
| 278 |
+
--------
|
| 279 |
+
all_pairs_shortest_path_length
|
| 280 |
+
all_pairs_dijkstra_path_length
|
| 281 |
+
all_pairs_bellman_ford_path_length
|
| 282 |
+
single_source_shortest_path_length
|
| 283 |
+
single_source_dijkstra_path_length
|
| 284 |
+
single_source_bellman_ford_path_length
|
| 285 |
+
"""
|
| 286 |
+
if method not in ("dijkstra", "bellman-ford"):
|
| 287 |
+
# so we don't need to check in each branch later
|
| 288 |
+
raise ValueError(f"method not supported: {method}")
|
| 289 |
+
method = "unweighted" if weight is None else method
|
| 290 |
+
if source is None:
|
| 291 |
+
if target is None:
|
| 292 |
+
# Find paths between all pairs.
|
| 293 |
+
if method == "unweighted":
|
| 294 |
+
paths = nx.all_pairs_shortest_path_length(G)
|
| 295 |
+
elif method == "dijkstra":
|
| 296 |
+
paths = nx.all_pairs_dijkstra_path_length(G, weight=weight)
|
| 297 |
+
else: # method == 'bellman-ford':
|
| 298 |
+
paths = nx.all_pairs_bellman_ford_path_length(G, weight=weight)
|
| 299 |
+
else:
|
| 300 |
+
# Find paths from all nodes co-accessible to the target.
|
| 301 |
+
if G.is_directed():
|
| 302 |
+
G = G.reverse(copy=False)
|
| 303 |
+
if method == "unweighted":
|
| 304 |
+
path_length = nx.single_source_shortest_path_length
|
| 305 |
+
paths = path_length(G, target)
|
| 306 |
+
elif method == "dijkstra":
|
| 307 |
+
path_length = nx.single_source_dijkstra_path_length
|
| 308 |
+
paths = path_length(G, target, weight=weight)
|
| 309 |
+
else: # method == 'bellman-ford':
|
| 310 |
+
path_length = nx.single_source_bellman_ford_path_length
|
| 311 |
+
paths = path_length(G, target, weight=weight)
|
| 312 |
+
else:
|
| 313 |
+
if target is None:
|
| 314 |
+
# Find paths to all nodes accessible from the source.
|
| 315 |
+
if method == "unweighted":
|
| 316 |
+
paths = nx.single_source_shortest_path_length(G, source)
|
| 317 |
+
elif method == "dijkstra":
|
| 318 |
+
path_length = nx.single_source_dijkstra_path_length
|
| 319 |
+
paths = path_length(G, source, weight=weight)
|
| 320 |
+
else: # method == 'bellman-ford':
|
| 321 |
+
path_length = nx.single_source_bellman_ford_path_length
|
| 322 |
+
paths = path_length(G, source, weight=weight)
|
| 323 |
+
else:
|
| 324 |
+
# Find shortest source-target path.
|
| 325 |
+
if method == "unweighted":
|
| 326 |
+
p = nx.bidirectional_shortest_path(G, source, target)
|
| 327 |
+
paths = len(p) - 1
|
| 328 |
+
elif method == "dijkstra":
|
| 329 |
+
paths = nx.dijkstra_path_length(G, source, target, weight)
|
| 330 |
+
else: # method == 'bellman-ford':
|
| 331 |
+
paths = nx.bellman_ford_path_length(G, source, target, weight)
|
| 332 |
+
return paths
|
| 333 |
+
|
| 334 |
+
|
| 335 |
+
@nx._dispatchable(edge_attrs="weight")
|
| 336 |
+
def average_shortest_path_length(G, weight=None, method=None):
|
| 337 |
+
r"""Returns the average shortest path length.
|
| 338 |
+
|
| 339 |
+
The average shortest path length is
|
| 340 |
+
|
| 341 |
+
.. math::
|
| 342 |
+
|
| 343 |
+
a =\sum_{\substack{s,t \in V \\ s\neq t}} \frac{d(s, t)}{n(n-1)}
|
| 344 |
+
|
| 345 |
+
where `V` is the set of nodes in `G`,
|
| 346 |
+
`d(s, t)` is the shortest path from `s` to `t`,
|
| 347 |
+
and `n` is the number of nodes in `G`.
|
| 348 |
+
|
| 349 |
+
.. versionchanged:: 3.0
|
| 350 |
+
An exception is raised for directed graphs that are not strongly
|
| 351 |
+
connected.
|
| 352 |
+
|
| 353 |
+
Parameters
|
| 354 |
+
----------
|
| 355 |
+
G : NetworkX graph
|
| 356 |
+
|
| 357 |
+
weight : None, string or function, optional (default = None)
|
| 358 |
+
If None, every edge has weight/distance/cost 1.
|
| 359 |
+
If a string, use this edge attribute as the edge weight.
|
| 360 |
+
Any edge attribute not present defaults to 1.
|
| 361 |
+
If this is a function, the weight of an edge is the value
|
| 362 |
+
returned by the function. The function must accept exactly
|
| 363 |
+
three positional arguments: the two endpoints of an edge and
|
| 364 |
+
the dictionary of edge attributes for that edge.
|
| 365 |
+
The function must return a number.
|
| 366 |
+
|
| 367 |
+
method : string, optional (default = 'unweighted' or 'dijkstra')
|
| 368 |
+
The algorithm to use to compute the path lengths.
|
| 369 |
+
Supported options are 'unweighted', 'dijkstra', 'bellman-ford',
|
| 370 |
+
'floyd-warshall' and 'floyd-warshall-numpy'.
|
| 371 |
+
Other method values produce a ValueError.
|
| 372 |
+
The default method is 'unweighted' if `weight` is None,
|
| 373 |
+
otherwise the default method is 'dijkstra'.
|
| 374 |
+
|
| 375 |
+
Raises
|
| 376 |
+
------
|
| 377 |
+
NetworkXPointlessConcept
|
| 378 |
+
If `G` is the null graph (that is, the graph on zero nodes).
|
| 379 |
+
|
| 380 |
+
NetworkXError
|
| 381 |
+
If `G` is not connected (or not strongly connected, in the case
|
| 382 |
+
of a directed graph).
|
| 383 |
+
|
| 384 |
+
ValueError
|
| 385 |
+
If `method` is not among the supported options.
|
| 386 |
+
|
| 387 |
+
Examples
|
| 388 |
+
--------
|
| 389 |
+
>>> G = nx.path_graph(5)
|
| 390 |
+
>>> nx.average_shortest_path_length(G)
|
| 391 |
+
2.0
|
| 392 |
+
|
| 393 |
+
For disconnected graphs, you can compute the average shortest path
|
| 394 |
+
length for each component
|
| 395 |
+
|
| 396 |
+
>>> G = nx.Graph([(1, 2), (3, 4)])
|
| 397 |
+
>>> for C in (G.subgraph(c).copy() for c in nx.connected_components(G)):
|
| 398 |
+
... print(nx.average_shortest_path_length(C))
|
| 399 |
+
1.0
|
| 400 |
+
1.0
|
| 401 |
+
|
| 402 |
+
"""
|
| 403 |
+
single_source_methods = ["unweighted", "dijkstra", "bellman-ford"]
|
| 404 |
+
all_pairs_methods = ["floyd-warshall", "floyd-warshall-numpy"]
|
| 405 |
+
supported_methods = single_source_methods + all_pairs_methods
|
| 406 |
+
|
| 407 |
+
if method is None:
|
| 408 |
+
method = "unweighted" if weight is None else "dijkstra"
|
| 409 |
+
if method not in supported_methods:
|
| 410 |
+
raise ValueError(f"method not supported: {method}")
|
| 411 |
+
|
| 412 |
+
n = len(G)
|
| 413 |
+
# For the special case of the null graph, raise an exception, since
|
| 414 |
+
# there are no paths in the null graph.
|
| 415 |
+
if n == 0:
|
| 416 |
+
msg = (
|
| 417 |
+
"the null graph has no paths, thus there is no average "
|
| 418 |
+
"shortest path length"
|
| 419 |
+
)
|
| 420 |
+
raise nx.NetworkXPointlessConcept(msg)
|
| 421 |
+
# For the special case of the trivial graph, return zero immediately.
|
| 422 |
+
if n == 1:
|
| 423 |
+
return 0
|
| 424 |
+
# Shortest path length is undefined if the graph is not strongly connected.
|
| 425 |
+
if G.is_directed() and not nx.is_strongly_connected(G):
|
| 426 |
+
raise nx.NetworkXError("Graph is not strongly connected.")
|
| 427 |
+
# Shortest path length is undefined if the graph is not connected.
|
| 428 |
+
if not G.is_directed() and not nx.is_connected(G):
|
| 429 |
+
raise nx.NetworkXError("Graph is not connected.")
|
| 430 |
+
|
| 431 |
+
# Compute all-pairs shortest paths.
|
| 432 |
+
def path_length(v):
|
| 433 |
+
if method == "unweighted":
|
| 434 |
+
return nx.single_source_shortest_path_length(G, v)
|
| 435 |
+
elif method == "dijkstra":
|
| 436 |
+
return nx.single_source_dijkstra_path_length(G, v, weight=weight)
|
| 437 |
+
elif method == "bellman-ford":
|
| 438 |
+
return nx.single_source_bellman_ford_path_length(G, v, weight=weight)
|
| 439 |
+
|
| 440 |
+
if method in single_source_methods:
|
| 441 |
+
# Sum the distances for each (ordered) pair of source and target node.
|
| 442 |
+
s = sum(l for u in G for l in path_length(u).values())
|
| 443 |
+
else:
|
| 444 |
+
if method == "floyd-warshall":
|
| 445 |
+
all_pairs = nx.floyd_warshall(G, weight=weight)
|
| 446 |
+
s = sum(sum(t.values()) for t in all_pairs.values())
|
| 447 |
+
elif method == "floyd-warshall-numpy":
|
| 448 |
+
s = float(nx.floyd_warshall_numpy(G, weight=weight).sum())
|
| 449 |
+
return s / (n * (n - 1))
|
| 450 |
+
|
| 451 |
+
|
| 452 |
+
@nx._dispatchable(edge_attrs="weight")
|
| 453 |
+
def all_shortest_paths(G, source, target, weight=None, method="dijkstra"):
|
| 454 |
+
"""Compute all shortest simple paths in the graph.
|
| 455 |
+
|
| 456 |
+
Parameters
|
| 457 |
+
----------
|
| 458 |
+
G : NetworkX graph
|
| 459 |
+
|
| 460 |
+
source : node
|
| 461 |
+
Starting node for path.
|
| 462 |
+
|
| 463 |
+
target : node
|
| 464 |
+
Ending node for path.
|
| 465 |
+
|
| 466 |
+
weight : None, string or function, optional (default = None)
|
| 467 |
+
If None, every edge has weight/distance/cost 1.
|
| 468 |
+
If a string, use this edge attribute as the edge weight.
|
| 469 |
+
Any edge attribute not present defaults to 1.
|
| 470 |
+
If this is a function, the weight of an edge is the value
|
| 471 |
+
returned by the function. The function must accept exactly
|
| 472 |
+
three positional arguments: the two endpoints of an edge and
|
| 473 |
+
the dictionary of edge attributes for that edge.
|
| 474 |
+
The function must return a number.
|
| 475 |
+
|
| 476 |
+
method : string, optional (default = 'dijkstra')
|
| 477 |
+
The algorithm to use to compute the path lengths.
|
| 478 |
+
Supported options: 'dijkstra', 'bellman-ford'.
|
| 479 |
+
Other inputs produce a ValueError.
|
| 480 |
+
If `weight` is None, unweighted graph methods are used, and this
|
| 481 |
+
suggestion is ignored.
|
| 482 |
+
|
| 483 |
+
Returns
|
| 484 |
+
-------
|
| 485 |
+
paths : generator of lists
|
| 486 |
+
A generator of all paths between source and target.
|
| 487 |
+
|
| 488 |
+
Raises
|
| 489 |
+
------
|
| 490 |
+
ValueError
|
| 491 |
+
If `method` is not among the supported options.
|
| 492 |
+
|
| 493 |
+
NetworkXNoPath
|
| 494 |
+
If `target` cannot be reached from `source`.
|
| 495 |
+
|
| 496 |
+
Examples
|
| 497 |
+
--------
|
| 498 |
+
>>> G = nx.Graph()
|
| 499 |
+
>>> nx.add_path(G, [0, 1, 2])
|
| 500 |
+
>>> nx.add_path(G, [0, 10, 2])
|
| 501 |
+
>>> print([p for p in nx.all_shortest_paths(G, source=0, target=2)])
|
| 502 |
+
[[0, 1, 2], [0, 10, 2]]
|
| 503 |
+
|
| 504 |
+
Notes
|
| 505 |
+
-----
|
| 506 |
+
There may be many shortest paths between the source and target. If G
|
| 507 |
+
contains zero-weight cycles, this function will not produce all shortest
|
| 508 |
+
paths because doing so would produce infinitely many paths of unbounded
|
| 509 |
+
length -- instead, we only produce the shortest simple paths.
|
| 510 |
+
|
| 511 |
+
See Also
|
| 512 |
+
--------
|
| 513 |
+
shortest_path
|
| 514 |
+
single_source_shortest_path
|
| 515 |
+
all_pairs_shortest_path
|
| 516 |
+
"""
|
| 517 |
+
method = "unweighted" if weight is None else method
|
| 518 |
+
if method == "unweighted":
|
| 519 |
+
pred = nx.predecessor(G, source)
|
| 520 |
+
elif method == "dijkstra":
|
| 521 |
+
pred, dist = nx.dijkstra_predecessor_and_distance(G, source, weight=weight)
|
| 522 |
+
elif method == "bellman-ford":
|
| 523 |
+
pred, dist = nx.bellman_ford_predecessor_and_distance(G, source, weight=weight)
|
| 524 |
+
else:
|
| 525 |
+
raise ValueError(f"method not supported: {method}")
|
| 526 |
+
|
| 527 |
+
return _build_paths_from_predecessors({source}, target, pred)
|
| 528 |
+
|
| 529 |
+
|
| 530 |
+
@nx._dispatchable(edge_attrs="weight")
|
| 531 |
+
def single_source_all_shortest_paths(G, source, weight=None, method="dijkstra"):
|
| 532 |
+
"""Compute all shortest simple paths from the given source in the graph.
|
| 533 |
+
|
| 534 |
+
Parameters
|
| 535 |
+
----------
|
| 536 |
+
G : NetworkX graph
|
| 537 |
+
|
| 538 |
+
source : node
|
| 539 |
+
Starting node for path.
|
| 540 |
+
|
| 541 |
+
weight : None, string or function, optional (default = None)
|
| 542 |
+
If None, every edge has weight/distance/cost 1.
|
| 543 |
+
If a string, use this edge attribute as the edge weight.
|
| 544 |
+
Any edge attribute not present defaults to 1.
|
| 545 |
+
If this is a function, the weight of an edge is the value
|
| 546 |
+
returned by the function. The function must accept exactly
|
| 547 |
+
three positional arguments: the two endpoints of an edge and
|
| 548 |
+
the dictionary of edge attributes for that edge.
|
| 549 |
+
The function must return a number.
|
| 550 |
+
|
| 551 |
+
method : string, optional (default = 'dijkstra')
|
| 552 |
+
The algorithm to use to compute the path lengths.
|
| 553 |
+
Supported options: 'dijkstra', 'bellman-ford'.
|
| 554 |
+
Other inputs produce a ValueError.
|
| 555 |
+
If `weight` is None, unweighted graph methods are used, and this
|
| 556 |
+
suggestion is ignored.
|
| 557 |
+
|
| 558 |
+
Returns
|
| 559 |
+
-------
|
| 560 |
+
paths : generator of dictionary
|
| 561 |
+
A generator of all paths between source and all nodes in the graph.
|
| 562 |
+
|
| 563 |
+
Raises
|
| 564 |
+
------
|
| 565 |
+
ValueError
|
| 566 |
+
If `method` is not among the supported options.
|
| 567 |
+
|
| 568 |
+
Examples
|
| 569 |
+
--------
|
| 570 |
+
>>> G = nx.Graph()
|
| 571 |
+
>>> nx.add_path(G, [0, 1, 2, 3, 0])
|
| 572 |
+
>>> dict(nx.single_source_all_shortest_paths(G, source=0))
|
| 573 |
+
{0: [[0]], 1: [[0, 1]], 2: [[0, 1, 2], [0, 3, 2]], 3: [[0, 3]]}
|
| 574 |
+
|
| 575 |
+
Notes
|
| 576 |
+
-----
|
| 577 |
+
There may be many shortest paths between the source and target. If G
|
| 578 |
+
contains zero-weight cycles, this function will not produce all shortest
|
| 579 |
+
paths because doing so would produce infinitely many paths of unbounded
|
| 580 |
+
length -- instead, we only produce the shortest simple paths.
|
| 581 |
+
|
| 582 |
+
See Also
|
| 583 |
+
--------
|
| 584 |
+
shortest_path
|
| 585 |
+
all_shortest_paths
|
| 586 |
+
single_source_shortest_path
|
| 587 |
+
all_pairs_shortest_path
|
| 588 |
+
all_pairs_all_shortest_paths
|
| 589 |
+
"""
|
| 590 |
+
method = "unweighted" if weight is None else method
|
| 591 |
+
if method == "unweighted":
|
| 592 |
+
pred = nx.predecessor(G, source)
|
| 593 |
+
elif method == "dijkstra":
|
| 594 |
+
pred, dist = nx.dijkstra_predecessor_and_distance(G, source, weight=weight)
|
| 595 |
+
elif method == "bellman-ford":
|
| 596 |
+
pred, dist = nx.bellman_ford_predecessor_and_distance(G, source, weight=weight)
|
| 597 |
+
else:
|
| 598 |
+
raise ValueError(f"method not supported: {method}")
|
| 599 |
+
for n in G:
|
| 600 |
+
try:
|
| 601 |
+
yield n, list(_build_paths_from_predecessors({source}, n, pred))
|
| 602 |
+
except nx.NetworkXNoPath:
|
| 603 |
+
pass
|
| 604 |
+
|
| 605 |
+
|
| 606 |
+
@nx._dispatchable(edge_attrs="weight")
|
| 607 |
+
def all_pairs_all_shortest_paths(G, weight=None, method="dijkstra"):
|
| 608 |
+
"""Compute all shortest paths between all nodes.
|
| 609 |
+
|
| 610 |
+
Parameters
|
| 611 |
+
----------
|
| 612 |
+
G : NetworkX graph
|
| 613 |
+
|
| 614 |
+
weight : None, string or function, optional (default = None)
|
| 615 |
+
If None, every edge has weight/distance/cost 1.
|
| 616 |
+
If a string, use this edge attribute as the edge weight.
|
| 617 |
+
Any edge attribute not present defaults to 1.
|
| 618 |
+
If this is a function, the weight of an edge is the value
|
| 619 |
+
returned by the function. The function must accept exactly
|
| 620 |
+
three positional arguments: the two endpoints of an edge and
|
| 621 |
+
the dictionary of edge attributes for that edge.
|
| 622 |
+
The function must return a number.
|
| 623 |
+
|
| 624 |
+
method : string, optional (default = 'dijkstra')
|
| 625 |
+
The algorithm to use to compute the path lengths.
|
| 626 |
+
Supported options: 'dijkstra', 'bellman-ford'.
|
| 627 |
+
Other inputs produce a ValueError.
|
| 628 |
+
If `weight` is None, unweighted graph methods are used, and this
|
| 629 |
+
suggestion is ignored.
|
| 630 |
+
|
| 631 |
+
Returns
|
| 632 |
+
-------
|
| 633 |
+
paths : generator of dictionary
|
| 634 |
+
Dictionary of arrays, keyed by source and target, of all shortest paths.
|
| 635 |
+
|
| 636 |
+
Raises
|
| 637 |
+
------
|
| 638 |
+
ValueError
|
| 639 |
+
If `method` is not among the supported options.
|
| 640 |
+
|
| 641 |
+
Examples
|
| 642 |
+
--------
|
| 643 |
+
>>> G = nx.cycle_graph(4)
|
| 644 |
+
>>> dict(nx.all_pairs_all_shortest_paths(G))[0][2]
|
| 645 |
+
[[0, 1, 2], [0, 3, 2]]
|
| 646 |
+
>>> dict(nx.all_pairs_all_shortest_paths(G))[0][3]
|
| 647 |
+
[[0, 3]]
|
| 648 |
+
|
| 649 |
+
Notes
|
| 650 |
+
-----
|
| 651 |
+
There may be multiple shortest paths with equal lengths. Unlike
|
| 652 |
+
all_pairs_shortest_path, this method returns all shortest paths.
|
| 653 |
+
|
| 654 |
+
See Also
|
| 655 |
+
--------
|
| 656 |
+
all_pairs_shortest_path
|
| 657 |
+
single_source_all_shortest_paths
|
| 658 |
+
"""
|
| 659 |
+
for n in G:
|
| 660 |
+
yield (
|
| 661 |
+
n,
|
| 662 |
+
dict(single_source_all_shortest_paths(G, n, weight=weight, method=method)),
|
| 663 |
+
)
|
| 664 |
+
|
| 665 |
+
|
| 666 |
+
def _build_paths_from_predecessors(sources, target, pred):
|
| 667 |
+
"""Compute all simple paths to target, given the predecessors found in
|
| 668 |
+
pred, terminating when any source in sources is found.
|
| 669 |
+
|
| 670 |
+
Parameters
|
| 671 |
+
----------
|
| 672 |
+
sources : set
|
| 673 |
+
Starting nodes for path.
|
| 674 |
+
|
| 675 |
+
target : node
|
| 676 |
+
Ending node for path.
|
| 677 |
+
|
| 678 |
+
pred : dict
|
| 679 |
+
A dictionary of predecessor lists, keyed by node
|
| 680 |
+
|
| 681 |
+
Returns
|
| 682 |
+
-------
|
| 683 |
+
paths : generator of lists
|
| 684 |
+
A generator of all paths between source and target.
|
| 685 |
+
|
| 686 |
+
Raises
|
| 687 |
+
------
|
| 688 |
+
NetworkXNoPath
|
| 689 |
+
If `target` cannot be reached from `source`.
|
| 690 |
+
|
| 691 |
+
Notes
|
| 692 |
+
-----
|
| 693 |
+
There may be many paths between the sources and target. If there are
|
| 694 |
+
cycles among the predecessors, this function will not produce all
|
| 695 |
+
possible paths because doing so would produce infinitely many paths
|
| 696 |
+
of unbounded length -- instead, we only produce simple paths.
|
| 697 |
+
|
| 698 |
+
See Also
|
| 699 |
+
--------
|
| 700 |
+
shortest_path
|
| 701 |
+
single_source_shortest_path
|
| 702 |
+
all_pairs_shortest_path
|
| 703 |
+
all_shortest_paths
|
| 704 |
+
bellman_ford_path
|
| 705 |
+
"""
|
| 706 |
+
if target not in pred:
|
| 707 |
+
raise nx.NetworkXNoPath(f"Target {target} cannot be reached from given sources")
|
| 708 |
+
|
| 709 |
+
seen = {target}
|
| 710 |
+
stack = [[target, 0]]
|
| 711 |
+
top = 0
|
| 712 |
+
while top >= 0:
|
| 713 |
+
node, i = stack[top]
|
| 714 |
+
if node in sources:
|
| 715 |
+
yield [p for p, n in reversed(stack[: top + 1])]
|
| 716 |
+
if len(pred[node]) > i:
|
| 717 |
+
stack[top][1] = i + 1
|
| 718 |
+
next = pred[node][i]
|
| 719 |
+
if next in seen:
|
| 720 |
+
continue
|
| 721 |
+
else:
|
| 722 |
+
seen.add(next)
|
| 723 |
+
top += 1
|
| 724 |
+
if top == len(stack):
|
| 725 |
+
stack.append([next, 0])
|
| 726 |
+
else:
|
| 727 |
+
stack[top][:] = [next, 0]
|
| 728 |
+
else:
|
| 729 |
+
seen.discard(node)
|
| 730 |
+
top -= 1
|
code/LaDi-RL-old-qwen-cod/LaDi-RL-old-qwen-cod/venv/lib64/python3.10/site-packages/networkx/algorithms/shortest_paths/tests/__init__.py
ADDED
|
File without changes
|
code/LaDi-RL-old-qwen-cod/LaDi-RL-old-qwen-cod/venv/lib64/python3.10/site-packages/networkx/algorithms/shortest_paths/tests/test_astar.py
ADDED
|
@@ -0,0 +1,248 @@
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|
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|
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|
|
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|
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|
|
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|
|
|
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|
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|
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|
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|
|
|
|
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|
|
|
|
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|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
import pytest
|
| 2 |
+
|
| 3 |
+
import networkx as nx
|
| 4 |
+
from networkx.utils import pairwise
|
| 5 |
+
|
| 6 |
+
|
| 7 |
+
class TestAStar:
|
| 8 |
+
@classmethod
|
| 9 |
+
def setup_class(cls):
|
| 10 |
+
edges = [
|
| 11 |
+
("s", "u", 10),
|
| 12 |
+
("s", "x", 5),
|
| 13 |
+
("u", "v", 1),
|
| 14 |
+
("u", "x", 2),
|
| 15 |
+
("v", "y", 1),
|
| 16 |
+
("x", "u", 3),
|
| 17 |
+
("x", "v", 5),
|
| 18 |
+
("x", "y", 2),
|
| 19 |
+
("y", "s", 7),
|
| 20 |
+
("y", "v", 6),
|
| 21 |
+
]
|
| 22 |
+
cls.XG = nx.DiGraph()
|
| 23 |
+
cls.XG.add_weighted_edges_from(edges)
|
| 24 |
+
|
| 25 |
+
def test_multiple_optimal_paths(self):
|
| 26 |
+
"""Tests that A* algorithm finds any of multiple optimal paths"""
|
| 27 |
+
heuristic_values = {"a": 1.35, "b": 1.18, "c": 0.67, "d": 0}
|
| 28 |
+
|
| 29 |
+
def h(u, v):
|
| 30 |
+
return heuristic_values[u]
|
| 31 |
+
|
| 32 |
+
graph = nx.Graph()
|
| 33 |
+
points = ["a", "b", "c", "d"]
|
| 34 |
+
edges = [("a", "b", 0.18), ("a", "c", 0.68), ("b", "c", 0.50), ("c", "d", 0.67)]
|
| 35 |
+
|
| 36 |
+
graph.add_nodes_from(points)
|
| 37 |
+
graph.add_weighted_edges_from(edges)
|
| 38 |
+
|
| 39 |
+
path1 = ["a", "c", "d"]
|
| 40 |
+
path2 = ["a", "b", "c", "d"]
|
| 41 |
+
assert nx.astar_path(graph, "a", "d", h) in (path1, path2)
|
| 42 |
+
|
| 43 |
+
def test_astar_directed(self):
|
| 44 |
+
assert nx.astar_path(self.XG, "s", "v") == ["s", "x", "u", "v"]
|
| 45 |
+
assert nx.astar_path_length(self.XG, "s", "v") == 9
|
| 46 |
+
|
| 47 |
+
def test_astar_directed_weight_function(self):
|
| 48 |
+
w1 = lambda u, v, d: d["weight"]
|
| 49 |
+
assert nx.astar_path(self.XG, "x", "u", weight=w1) == ["x", "u"]
|
| 50 |
+
assert nx.astar_path_length(self.XG, "x", "u", weight=w1) == 3
|
| 51 |
+
assert nx.astar_path(self.XG, "s", "v", weight=w1) == ["s", "x", "u", "v"]
|
| 52 |
+
assert nx.astar_path_length(self.XG, "s", "v", weight=w1) == 9
|
| 53 |
+
|
| 54 |
+
w2 = lambda u, v, d: None if (u, v) == ("x", "u") else d["weight"]
|
| 55 |
+
assert nx.astar_path(self.XG, "x", "u", weight=w2) == ["x", "y", "s", "u"]
|
| 56 |
+
assert nx.astar_path_length(self.XG, "x", "u", weight=w2) == 19
|
| 57 |
+
assert nx.astar_path(self.XG, "s", "v", weight=w2) == ["s", "x", "v"]
|
| 58 |
+
assert nx.astar_path_length(self.XG, "s", "v", weight=w2) == 10
|
| 59 |
+
|
| 60 |
+
w3 = lambda u, v, d: d["weight"] + 10
|
| 61 |
+
assert nx.astar_path(self.XG, "x", "u", weight=w3) == ["x", "u"]
|
| 62 |
+
assert nx.astar_path_length(self.XG, "x", "u", weight=w3) == 13
|
| 63 |
+
assert nx.astar_path(self.XG, "s", "v", weight=w3) == ["s", "x", "v"]
|
| 64 |
+
assert nx.astar_path_length(self.XG, "s", "v", weight=w3) == 30
|
| 65 |
+
|
| 66 |
+
def test_astar_multigraph(self):
|
| 67 |
+
G = nx.MultiDiGraph(self.XG)
|
| 68 |
+
G.add_weighted_edges_from((u, v, 1000) for (u, v) in list(G.edges()))
|
| 69 |
+
assert nx.astar_path(G, "s", "v") == ["s", "x", "u", "v"]
|
| 70 |
+
assert nx.astar_path_length(G, "s", "v") == 9
|
| 71 |
+
|
| 72 |
+
def test_astar_undirected(self):
|
| 73 |
+
GG = self.XG.to_undirected()
|
| 74 |
+
# make sure we get lower weight
|
| 75 |
+
# to_undirected might choose either edge with weight 2 or weight 3
|
| 76 |
+
GG["u"]["x"]["weight"] = 2
|
| 77 |
+
GG["y"]["v"]["weight"] = 2
|
| 78 |
+
assert nx.astar_path(GG, "s", "v") == ["s", "x", "u", "v"]
|
| 79 |
+
assert nx.astar_path_length(GG, "s", "v") == 8
|
| 80 |
+
|
| 81 |
+
def test_astar_directed2(self):
|
| 82 |
+
XG2 = nx.DiGraph()
|
| 83 |
+
edges = [
|
| 84 |
+
(1, 4, 1),
|
| 85 |
+
(4, 5, 1),
|
| 86 |
+
(5, 6, 1),
|
| 87 |
+
(6, 3, 1),
|
| 88 |
+
(1, 3, 50),
|
| 89 |
+
(1, 2, 100),
|
| 90 |
+
(2, 3, 100),
|
| 91 |
+
]
|
| 92 |
+
XG2.add_weighted_edges_from(edges)
|
| 93 |
+
assert nx.astar_path(XG2, 1, 3) == [1, 4, 5, 6, 3]
|
| 94 |
+
|
| 95 |
+
def test_astar_undirected2(self):
|
| 96 |
+
XG3 = nx.Graph()
|
| 97 |
+
edges = [(0, 1, 2), (1, 2, 12), (2, 3, 1), (3, 4, 5), (4, 5, 1), (5, 0, 10)]
|
| 98 |
+
XG3.add_weighted_edges_from(edges)
|
| 99 |
+
assert nx.astar_path(XG3, 0, 3) == [0, 1, 2, 3]
|
| 100 |
+
assert nx.astar_path_length(XG3, 0, 3) == 15
|
| 101 |
+
|
| 102 |
+
def test_astar_undirected3(self):
|
| 103 |
+
XG4 = nx.Graph()
|
| 104 |
+
edges = [
|
| 105 |
+
(0, 1, 2),
|
| 106 |
+
(1, 2, 2),
|
| 107 |
+
(2, 3, 1),
|
| 108 |
+
(3, 4, 1),
|
| 109 |
+
(4, 5, 1),
|
| 110 |
+
(5, 6, 1),
|
| 111 |
+
(6, 7, 1),
|
| 112 |
+
(7, 0, 1),
|
| 113 |
+
]
|
| 114 |
+
XG4.add_weighted_edges_from(edges)
|
| 115 |
+
assert nx.astar_path(XG4, 0, 2) == [0, 1, 2]
|
| 116 |
+
assert nx.astar_path_length(XG4, 0, 2) == 4
|
| 117 |
+
|
| 118 |
+
""" Tests that A* finds correct path when multiple paths exist
|
| 119 |
+
and the best one is not expanded first (GH issue #3464)
|
| 120 |
+
"""
|
| 121 |
+
|
| 122 |
+
def test_astar_directed3(self):
|
| 123 |
+
heuristic_values = {"n5": 36, "n2": 4, "n1": 0, "n0": 0}
|
| 124 |
+
|
| 125 |
+
def h(u, v):
|
| 126 |
+
return heuristic_values[u]
|
| 127 |
+
|
| 128 |
+
edges = [("n5", "n1", 11), ("n5", "n2", 9), ("n2", "n1", 1), ("n1", "n0", 32)]
|
| 129 |
+
graph = nx.DiGraph()
|
| 130 |
+
graph.add_weighted_edges_from(edges)
|
| 131 |
+
answer = ["n5", "n2", "n1", "n0"]
|
| 132 |
+
assert nx.astar_path(graph, "n5", "n0", h) == answer
|
| 133 |
+
|
| 134 |
+
""" Tests that parent is not wrongly overridden when a node
|
| 135 |
+
is re-explored multiple times.
|
| 136 |
+
"""
|
| 137 |
+
|
| 138 |
+
def test_astar_directed4(self):
|
| 139 |
+
edges = [
|
| 140 |
+
("a", "b", 1),
|
| 141 |
+
("a", "c", 1),
|
| 142 |
+
("b", "d", 2),
|
| 143 |
+
("c", "d", 1),
|
| 144 |
+
("d", "e", 1),
|
| 145 |
+
]
|
| 146 |
+
graph = nx.DiGraph()
|
| 147 |
+
graph.add_weighted_edges_from(edges)
|
| 148 |
+
assert nx.astar_path(graph, "a", "e") == ["a", "c", "d", "e"]
|
| 149 |
+
|
| 150 |
+
# >>> MXG4=NX.MultiGraph(XG4)
|
| 151 |
+
# >>> MXG4.add_edge(0,1,3)
|
| 152 |
+
# >>> NX.dijkstra_path(MXG4,0,2)
|
| 153 |
+
# [0, 1, 2]
|
| 154 |
+
|
| 155 |
+
def test_astar_w1(self):
|
| 156 |
+
G = nx.DiGraph()
|
| 157 |
+
G.add_edges_from(
|
| 158 |
+
[
|
| 159 |
+
("s", "u"),
|
| 160 |
+
("s", "x"),
|
| 161 |
+
("u", "v"),
|
| 162 |
+
("u", "x"),
|
| 163 |
+
("v", "y"),
|
| 164 |
+
("x", "u"),
|
| 165 |
+
("x", "w"),
|
| 166 |
+
("w", "v"),
|
| 167 |
+
("x", "y"),
|
| 168 |
+
("y", "s"),
|
| 169 |
+
("y", "v"),
|
| 170 |
+
]
|
| 171 |
+
)
|
| 172 |
+
assert nx.astar_path(G, "s", "v") == ["s", "u", "v"]
|
| 173 |
+
assert nx.astar_path_length(G, "s", "v") == 2
|
| 174 |
+
|
| 175 |
+
def test_astar_nopath(self):
|
| 176 |
+
with pytest.raises(nx.NodeNotFound):
|
| 177 |
+
nx.astar_path(self.XG, "s", "moon")
|
| 178 |
+
|
| 179 |
+
def test_astar_cutoff(self):
|
| 180 |
+
with pytest.raises(nx.NetworkXNoPath):
|
| 181 |
+
# optimal path_length in XG is 9
|
| 182 |
+
nx.astar_path(self.XG, "s", "v", cutoff=8.0)
|
| 183 |
+
with pytest.raises(nx.NetworkXNoPath):
|
| 184 |
+
nx.astar_path_length(self.XG, "s", "v", cutoff=8.0)
|
| 185 |
+
|
| 186 |
+
def test_astar_admissible_heuristic_with_cutoff(self):
|
| 187 |
+
heuristic_values = {"s": 36, "y": 4, "x": 0, "u": 0, "v": 0}
|
| 188 |
+
|
| 189 |
+
def h(u, v):
|
| 190 |
+
return heuristic_values[u]
|
| 191 |
+
|
| 192 |
+
assert nx.astar_path_length(self.XG, "s", "v") == 9
|
| 193 |
+
assert nx.astar_path_length(self.XG, "s", "v", heuristic=h) == 9
|
| 194 |
+
assert nx.astar_path_length(self.XG, "s", "v", heuristic=h, cutoff=12) == 9
|
| 195 |
+
assert nx.astar_path_length(self.XG, "s", "v", heuristic=h, cutoff=9) == 9
|
| 196 |
+
with pytest.raises(nx.NetworkXNoPath):
|
| 197 |
+
nx.astar_path_length(self.XG, "s", "v", heuristic=h, cutoff=8)
|
| 198 |
+
|
| 199 |
+
def test_astar_inadmissible_heuristic_with_cutoff(self):
|
| 200 |
+
heuristic_values = {"s": 36, "y": 14, "x": 10, "u": 10, "v": 0}
|
| 201 |
+
|
| 202 |
+
def h(u, v):
|
| 203 |
+
return heuristic_values[u]
|
| 204 |
+
|
| 205 |
+
# optimal path_length in XG is 9. This heuristic gives over-estimate.
|
| 206 |
+
assert nx.astar_path_length(self.XG, "s", "v", heuristic=h) == 10
|
| 207 |
+
assert nx.astar_path_length(self.XG, "s", "v", heuristic=h, cutoff=15) == 10
|
| 208 |
+
with pytest.raises(nx.NetworkXNoPath):
|
| 209 |
+
nx.astar_path_length(self.XG, "s", "v", heuristic=h, cutoff=9)
|
| 210 |
+
with pytest.raises(nx.NetworkXNoPath):
|
| 211 |
+
nx.astar_path_length(self.XG, "s", "v", heuristic=h, cutoff=12)
|
| 212 |
+
|
| 213 |
+
def test_astar_cutoff2(self):
|
| 214 |
+
assert nx.astar_path(self.XG, "s", "v", cutoff=10.0) == ["s", "x", "u", "v"]
|
| 215 |
+
assert nx.astar_path_length(self.XG, "s", "v") == 9
|
| 216 |
+
|
| 217 |
+
def test_cycle(self):
|
| 218 |
+
C = nx.cycle_graph(7)
|
| 219 |
+
assert nx.astar_path(C, 0, 3) == [0, 1, 2, 3]
|
| 220 |
+
assert nx.dijkstra_path(C, 0, 4) == [0, 6, 5, 4]
|
| 221 |
+
|
| 222 |
+
def test_unorderable_nodes(self):
|
| 223 |
+
"""Tests that A* accommodates nodes that are not orderable.
|
| 224 |
+
|
| 225 |
+
For more information, see issue #554.
|
| 226 |
+
|
| 227 |
+
"""
|
| 228 |
+
# Create the cycle graph on four nodes, with nodes represented
|
| 229 |
+
# as (unorderable) Python objects.
|
| 230 |
+
nodes = [object() for n in range(4)]
|
| 231 |
+
G = nx.Graph()
|
| 232 |
+
G.add_edges_from(pairwise(nodes, cyclic=True))
|
| 233 |
+
path = nx.astar_path(G, nodes[0], nodes[2])
|
| 234 |
+
assert len(path) == 3
|
| 235 |
+
|
| 236 |
+
def test_astar_NetworkXNoPath(self):
|
| 237 |
+
"""Tests that exception is raised when there exists no
|
| 238 |
+
path between source and target"""
|
| 239 |
+
G = nx.gnp_random_graph(10, 0.2, seed=10)
|
| 240 |
+
with pytest.raises(nx.NetworkXNoPath):
|
| 241 |
+
nx.astar_path(G, 4, 9)
|
| 242 |
+
|
| 243 |
+
def test_astar_NodeNotFound(self):
|
| 244 |
+
"""Tests that exception is raised when either
|
| 245 |
+
source or target is not in graph"""
|
| 246 |
+
G = nx.gnp_random_graph(10, 0.2, seed=10)
|
| 247 |
+
with pytest.raises(nx.NodeNotFound):
|
| 248 |
+
nx.astar_path_length(G, 11, 9)
|
code/LaDi-RL-old-qwen-cod/LaDi-RL-old-qwen-cod/venv/lib64/python3.10/site-packages/networkx/algorithms/shortest_paths/tests/test_dense.py
ADDED
|
@@ -0,0 +1,212 @@
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|
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|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
import pytest
|
| 2 |
+
|
| 3 |
+
import networkx as nx
|
| 4 |
+
|
| 5 |
+
|
| 6 |
+
class TestFloyd:
|
| 7 |
+
@classmethod
|
| 8 |
+
def setup_class(cls):
|
| 9 |
+
pass
|
| 10 |
+
|
| 11 |
+
def test_floyd_warshall_predecessor_and_distance(self):
|
| 12 |
+
XG = nx.DiGraph()
|
| 13 |
+
XG.add_weighted_edges_from(
|
| 14 |
+
[
|
| 15 |
+
("s", "u", 10),
|
| 16 |
+
("s", "x", 5),
|
| 17 |
+
("u", "v", 1),
|
| 18 |
+
("u", "x", 2),
|
| 19 |
+
("v", "y", 1),
|
| 20 |
+
("x", "u", 3),
|
| 21 |
+
("x", "v", 5),
|
| 22 |
+
("x", "y", 2),
|
| 23 |
+
("y", "s", 7),
|
| 24 |
+
("y", "v", 6),
|
| 25 |
+
]
|
| 26 |
+
)
|
| 27 |
+
path, dist = nx.floyd_warshall_predecessor_and_distance(XG)
|
| 28 |
+
assert dist["s"]["v"] == 9
|
| 29 |
+
assert path["s"]["v"] == "u"
|
| 30 |
+
assert dist == {
|
| 31 |
+
"y": {"y": 0, "x": 12, "s": 7, "u": 15, "v": 6},
|
| 32 |
+
"x": {"y": 2, "x": 0, "s": 9, "u": 3, "v": 4},
|
| 33 |
+
"s": {"y": 7, "x": 5, "s": 0, "u": 8, "v": 9},
|
| 34 |
+
"u": {"y": 2, "x": 2, "s": 9, "u": 0, "v": 1},
|
| 35 |
+
"v": {"y": 1, "x": 13, "s": 8, "u": 16, "v": 0},
|
| 36 |
+
}
|
| 37 |
+
|
| 38 |
+
GG = XG.to_undirected()
|
| 39 |
+
# make sure we get lower weight
|
| 40 |
+
# to_undirected might choose either edge with weight 2 or weight 3
|
| 41 |
+
GG["u"]["x"]["weight"] = 2
|
| 42 |
+
path, dist = nx.floyd_warshall_predecessor_and_distance(GG)
|
| 43 |
+
assert dist["s"]["v"] == 8
|
| 44 |
+
# skip this test, could be alternate path s-u-v
|
| 45 |
+
# assert_equal(path['s']['v'],'y')
|
| 46 |
+
|
| 47 |
+
G = nx.DiGraph() # no weights
|
| 48 |
+
G.add_edges_from(
|
| 49 |
+
[
|
| 50 |
+
("s", "u"),
|
| 51 |
+
("s", "x"),
|
| 52 |
+
("u", "v"),
|
| 53 |
+
("u", "x"),
|
| 54 |
+
("v", "y"),
|
| 55 |
+
("x", "u"),
|
| 56 |
+
("x", "v"),
|
| 57 |
+
("x", "y"),
|
| 58 |
+
("y", "s"),
|
| 59 |
+
("y", "v"),
|
| 60 |
+
]
|
| 61 |
+
)
|
| 62 |
+
path, dist = nx.floyd_warshall_predecessor_and_distance(G)
|
| 63 |
+
assert dist["s"]["v"] == 2
|
| 64 |
+
# skip this test, could be alternate path s-u-v
|
| 65 |
+
# assert_equal(path['s']['v'],'x')
|
| 66 |
+
|
| 67 |
+
# alternate interface
|
| 68 |
+
dist = nx.floyd_warshall(G)
|
| 69 |
+
assert dist["s"]["v"] == 2
|
| 70 |
+
|
| 71 |
+
# floyd_warshall_predecessor_and_distance returns
|
| 72 |
+
# dicts-of-defautdicts
|
| 73 |
+
# make sure we don't get empty dictionary
|
| 74 |
+
XG = nx.DiGraph()
|
| 75 |
+
XG.add_weighted_edges_from(
|
| 76 |
+
[("v", "x", 5.0), ("y", "x", 5.0), ("v", "y", 6.0), ("x", "u", 2.0)]
|
| 77 |
+
)
|
| 78 |
+
path, dist = nx.floyd_warshall_predecessor_and_distance(XG)
|
| 79 |
+
inf = float("inf")
|
| 80 |
+
assert dist == {
|
| 81 |
+
"v": {"v": 0, "x": 5.0, "y": 6.0, "u": 7.0},
|
| 82 |
+
"x": {"x": 0, "u": 2.0, "v": inf, "y": inf},
|
| 83 |
+
"y": {"y": 0, "x": 5.0, "v": inf, "u": 7.0},
|
| 84 |
+
"u": {"u": 0, "v": inf, "x": inf, "y": inf},
|
| 85 |
+
}
|
| 86 |
+
assert path == {
|
| 87 |
+
"v": {"x": "v", "y": "v", "u": "x"},
|
| 88 |
+
"x": {"u": "x"},
|
| 89 |
+
"y": {"x": "y", "u": "x"},
|
| 90 |
+
}
|
| 91 |
+
|
| 92 |
+
def test_reconstruct_path(self):
|
| 93 |
+
with pytest.raises(KeyError):
|
| 94 |
+
XG = nx.DiGraph()
|
| 95 |
+
XG.add_weighted_edges_from(
|
| 96 |
+
[
|
| 97 |
+
("s", "u", 10),
|
| 98 |
+
("s", "x", 5),
|
| 99 |
+
("u", "v", 1),
|
| 100 |
+
("u", "x", 2),
|
| 101 |
+
("v", "y", 1),
|
| 102 |
+
("x", "u", 3),
|
| 103 |
+
("x", "v", 5),
|
| 104 |
+
("x", "y", 2),
|
| 105 |
+
("y", "s", 7),
|
| 106 |
+
("y", "v", 6),
|
| 107 |
+
]
|
| 108 |
+
)
|
| 109 |
+
predecessors, _ = nx.floyd_warshall_predecessor_and_distance(XG)
|
| 110 |
+
|
| 111 |
+
path = nx.reconstruct_path("s", "v", predecessors)
|
| 112 |
+
assert path == ["s", "x", "u", "v"]
|
| 113 |
+
|
| 114 |
+
path = nx.reconstruct_path("s", "s", predecessors)
|
| 115 |
+
assert path == []
|
| 116 |
+
|
| 117 |
+
# this part raises the keyError
|
| 118 |
+
nx.reconstruct_path("1", "2", predecessors)
|
| 119 |
+
|
| 120 |
+
def test_cycle(self):
|
| 121 |
+
path, dist = nx.floyd_warshall_predecessor_and_distance(nx.cycle_graph(7))
|
| 122 |
+
assert dist[0][3] == 3
|
| 123 |
+
assert path[0][3] == 2
|
| 124 |
+
assert dist[0][4] == 3
|
| 125 |
+
|
| 126 |
+
def test_weighted(self):
|
| 127 |
+
XG3 = nx.Graph()
|
| 128 |
+
XG3.add_weighted_edges_from(
|
| 129 |
+
[[0, 1, 2], [1, 2, 12], [2, 3, 1], [3, 4, 5], [4, 5, 1], [5, 0, 10]]
|
| 130 |
+
)
|
| 131 |
+
path, dist = nx.floyd_warshall_predecessor_and_distance(XG3)
|
| 132 |
+
assert dist[0][3] == 15
|
| 133 |
+
assert path[0][3] == 2
|
| 134 |
+
|
| 135 |
+
def test_weighted2(self):
|
| 136 |
+
XG4 = nx.Graph()
|
| 137 |
+
XG4.add_weighted_edges_from(
|
| 138 |
+
[
|
| 139 |
+
[0, 1, 2],
|
| 140 |
+
[1, 2, 2],
|
| 141 |
+
[2, 3, 1],
|
| 142 |
+
[3, 4, 1],
|
| 143 |
+
[4, 5, 1],
|
| 144 |
+
[5, 6, 1],
|
| 145 |
+
[6, 7, 1],
|
| 146 |
+
[7, 0, 1],
|
| 147 |
+
]
|
| 148 |
+
)
|
| 149 |
+
path, dist = nx.floyd_warshall_predecessor_and_distance(XG4)
|
| 150 |
+
assert dist[0][2] == 4
|
| 151 |
+
assert path[0][2] == 1
|
| 152 |
+
|
| 153 |
+
def test_weight_parameter(self):
|
| 154 |
+
XG4 = nx.Graph()
|
| 155 |
+
XG4.add_edges_from(
|
| 156 |
+
[
|
| 157 |
+
(0, 1, {"heavy": 2}),
|
| 158 |
+
(1, 2, {"heavy": 2}),
|
| 159 |
+
(2, 3, {"heavy": 1}),
|
| 160 |
+
(3, 4, {"heavy": 1}),
|
| 161 |
+
(4, 5, {"heavy": 1}),
|
| 162 |
+
(5, 6, {"heavy": 1}),
|
| 163 |
+
(6, 7, {"heavy": 1}),
|
| 164 |
+
(7, 0, {"heavy": 1}),
|
| 165 |
+
]
|
| 166 |
+
)
|
| 167 |
+
path, dist = nx.floyd_warshall_predecessor_and_distance(XG4, weight="heavy")
|
| 168 |
+
assert dist[0][2] == 4
|
| 169 |
+
assert path[0][2] == 1
|
| 170 |
+
|
| 171 |
+
def test_zero_distance(self):
|
| 172 |
+
XG = nx.DiGraph()
|
| 173 |
+
XG.add_weighted_edges_from(
|
| 174 |
+
[
|
| 175 |
+
("s", "u", 10),
|
| 176 |
+
("s", "x", 5),
|
| 177 |
+
("u", "v", 1),
|
| 178 |
+
("u", "x", 2),
|
| 179 |
+
("v", "y", 1),
|
| 180 |
+
("x", "u", 3),
|
| 181 |
+
("x", "v", 5),
|
| 182 |
+
("x", "y", 2),
|
| 183 |
+
("y", "s", 7),
|
| 184 |
+
("y", "v", 6),
|
| 185 |
+
]
|
| 186 |
+
)
|
| 187 |
+
path, dist = nx.floyd_warshall_predecessor_and_distance(XG)
|
| 188 |
+
|
| 189 |
+
for u in XG:
|
| 190 |
+
assert dist[u][u] == 0
|
| 191 |
+
|
| 192 |
+
GG = XG.to_undirected()
|
| 193 |
+
# make sure we get lower weight
|
| 194 |
+
# to_undirected might choose either edge with weight 2 or weight 3
|
| 195 |
+
GG["u"]["x"]["weight"] = 2
|
| 196 |
+
path, dist = nx.floyd_warshall_predecessor_and_distance(GG)
|
| 197 |
+
|
| 198 |
+
for u in GG:
|
| 199 |
+
dist[u][u] = 0
|
| 200 |
+
|
| 201 |
+
def test_zero_weight(self):
|
| 202 |
+
G = nx.DiGraph()
|
| 203 |
+
edges = [(1, 2, -2), (2, 3, -4), (1, 5, 1), (5, 4, 0), (4, 3, -5), (2, 5, -7)]
|
| 204 |
+
G.add_weighted_edges_from(edges)
|
| 205 |
+
dist = nx.floyd_warshall(G)
|
| 206 |
+
assert dist[1][3] == -14
|
| 207 |
+
|
| 208 |
+
G = nx.MultiDiGraph()
|
| 209 |
+
edges.append((2, 5, -7))
|
| 210 |
+
G.add_weighted_edges_from(edges)
|
| 211 |
+
dist = nx.floyd_warshall(G)
|
| 212 |
+
assert dist[1][3] == -14
|
code/LaDi-RL-old-qwen-cod/LaDi-RL-old-qwen-cod/venv/lib64/python3.10/site-packages/networkx/algorithms/shortest_paths/tests/test_dense_numpy.py
ADDED
|
@@ -0,0 +1,89 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
import pytest
|
| 2 |
+
|
| 3 |
+
np = pytest.importorskip("numpy")
|
| 4 |
+
|
| 5 |
+
|
| 6 |
+
import networkx as nx
|
| 7 |
+
|
| 8 |
+
|
| 9 |
+
def test_cycle_numpy():
|
| 10 |
+
dist = nx.floyd_warshall_numpy(nx.cycle_graph(7))
|
| 11 |
+
assert dist[0, 3] == 3
|
| 12 |
+
assert dist[0, 4] == 3
|
| 13 |
+
|
| 14 |
+
|
| 15 |
+
def test_weighted_numpy_three_edges():
|
| 16 |
+
XG3 = nx.Graph()
|
| 17 |
+
XG3.add_weighted_edges_from(
|
| 18 |
+
[[0, 1, 2], [1, 2, 12], [2, 3, 1], [3, 4, 5], [4, 5, 1], [5, 0, 10]]
|
| 19 |
+
)
|
| 20 |
+
dist = nx.floyd_warshall_numpy(XG3)
|
| 21 |
+
assert dist[0, 3] == 15
|
| 22 |
+
|
| 23 |
+
|
| 24 |
+
def test_weighted_numpy_two_edges():
|
| 25 |
+
XG4 = nx.Graph()
|
| 26 |
+
XG4.add_weighted_edges_from(
|
| 27 |
+
[
|
| 28 |
+
[0, 1, 2],
|
| 29 |
+
[1, 2, 2],
|
| 30 |
+
[2, 3, 1],
|
| 31 |
+
[3, 4, 1],
|
| 32 |
+
[4, 5, 1],
|
| 33 |
+
[5, 6, 1],
|
| 34 |
+
[6, 7, 1],
|
| 35 |
+
[7, 0, 1],
|
| 36 |
+
]
|
| 37 |
+
)
|
| 38 |
+
dist = nx.floyd_warshall_numpy(XG4)
|
| 39 |
+
assert dist[0, 2] == 4
|
| 40 |
+
|
| 41 |
+
|
| 42 |
+
def test_weight_parameter_numpy():
|
| 43 |
+
XG4 = nx.Graph()
|
| 44 |
+
XG4.add_edges_from(
|
| 45 |
+
[
|
| 46 |
+
(0, 1, {"heavy": 2}),
|
| 47 |
+
(1, 2, {"heavy": 2}),
|
| 48 |
+
(2, 3, {"heavy": 1}),
|
| 49 |
+
(3, 4, {"heavy": 1}),
|
| 50 |
+
(4, 5, {"heavy": 1}),
|
| 51 |
+
(5, 6, {"heavy": 1}),
|
| 52 |
+
(6, 7, {"heavy": 1}),
|
| 53 |
+
(7, 0, {"heavy": 1}),
|
| 54 |
+
]
|
| 55 |
+
)
|
| 56 |
+
dist = nx.floyd_warshall_numpy(XG4, weight="heavy")
|
| 57 |
+
assert dist[0, 2] == 4
|
| 58 |
+
|
| 59 |
+
|
| 60 |
+
def test_directed_cycle_numpy():
|
| 61 |
+
G = nx.DiGraph()
|
| 62 |
+
nx.add_cycle(G, [0, 1, 2, 3])
|
| 63 |
+
pred, dist = nx.floyd_warshall_predecessor_and_distance(G)
|
| 64 |
+
D = nx.utils.dict_to_numpy_array(dist)
|
| 65 |
+
np.testing.assert_equal(nx.floyd_warshall_numpy(G), D)
|
| 66 |
+
|
| 67 |
+
|
| 68 |
+
def test_zero_weight():
|
| 69 |
+
G = nx.DiGraph()
|
| 70 |
+
edges = [(1, 2, -2), (2, 3, -4), (1, 5, 1), (5, 4, 0), (4, 3, -5), (2, 5, -7)]
|
| 71 |
+
G.add_weighted_edges_from(edges)
|
| 72 |
+
dist = nx.floyd_warshall_numpy(G)
|
| 73 |
+
assert int(np.min(dist)) == -14
|
| 74 |
+
|
| 75 |
+
G = nx.MultiDiGraph()
|
| 76 |
+
edges.append((2, 5, -7))
|
| 77 |
+
G.add_weighted_edges_from(edges)
|
| 78 |
+
dist = nx.floyd_warshall_numpy(G)
|
| 79 |
+
assert int(np.min(dist)) == -14
|
| 80 |
+
|
| 81 |
+
|
| 82 |
+
def test_nodelist():
|
| 83 |
+
G = nx.path_graph(7)
|
| 84 |
+
dist = nx.floyd_warshall_numpy(G, nodelist=[3, 5, 4, 6, 2, 1, 0])
|
| 85 |
+
assert dist[0, 3] == 3
|
| 86 |
+
assert dist[0, 1] == 2
|
| 87 |
+
assert dist[6, 2] == 4
|
| 88 |
+
pytest.raises(nx.NetworkXError, nx.floyd_warshall_numpy, G, [1, 3])
|
| 89 |
+
pytest.raises(nx.NetworkXError, nx.floyd_warshall_numpy, G, list(range(9)))
|
code/LaDi-RL-old-qwen-cod/LaDi-RL-old-qwen-cod/venv/lib64/python3.10/site-packages/networkx/algorithms/shortest_paths/tests/test_generic.py
ADDED
|
@@ -0,0 +1,450 @@
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|
| 1 |
+
import pytest
|
| 2 |
+
|
| 3 |
+
import networkx as nx
|
| 4 |
+
|
| 5 |
+
|
| 6 |
+
def validate_grid_path(r, c, s, t, p):
|
| 7 |
+
assert isinstance(p, list)
|
| 8 |
+
assert p[0] == s
|
| 9 |
+
assert p[-1] == t
|
| 10 |
+
s = ((s - 1) // c, (s - 1) % c)
|
| 11 |
+
t = ((t - 1) // c, (t - 1) % c)
|
| 12 |
+
assert len(p) == abs(t[0] - s[0]) + abs(t[1] - s[1]) + 1
|
| 13 |
+
p = [((u - 1) // c, (u - 1) % c) for u in p]
|
| 14 |
+
for u in p:
|
| 15 |
+
assert 0 <= u[0] < r
|
| 16 |
+
assert 0 <= u[1] < c
|
| 17 |
+
for u, v in zip(p[:-1], p[1:]):
|
| 18 |
+
assert (abs(v[0] - u[0]), abs(v[1] - u[1])) in [(0, 1), (1, 0)]
|
| 19 |
+
|
| 20 |
+
|
| 21 |
+
class TestGenericPath:
|
| 22 |
+
@classmethod
|
| 23 |
+
def setup_class(cls):
|
| 24 |
+
from networkx import convert_node_labels_to_integers as cnlti
|
| 25 |
+
|
| 26 |
+
cls.grid = cnlti(nx.grid_2d_graph(4, 4), first_label=1, ordering="sorted")
|
| 27 |
+
cls.cycle = nx.cycle_graph(7)
|
| 28 |
+
cls.directed_cycle = nx.cycle_graph(7, create_using=nx.DiGraph())
|
| 29 |
+
cls.neg_weights = nx.DiGraph()
|
| 30 |
+
cls.neg_weights.add_edge(0, 1, weight=1)
|
| 31 |
+
cls.neg_weights.add_edge(0, 2, weight=3)
|
| 32 |
+
cls.neg_weights.add_edge(1, 3, weight=1)
|
| 33 |
+
cls.neg_weights.add_edge(2, 3, weight=-2)
|
| 34 |
+
|
| 35 |
+
def test_shortest_path(self):
|
| 36 |
+
assert nx.shortest_path(self.cycle, 0, 3) == [0, 1, 2, 3]
|
| 37 |
+
assert nx.shortest_path(self.cycle, 0, 4) == [0, 6, 5, 4]
|
| 38 |
+
validate_grid_path(4, 4, 1, 12, nx.shortest_path(self.grid, 1, 12))
|
| 39 |
+
assert nx.shortest_path(self.directed_cycle, 0, 3) == [0, 1, 2, 3]
|
| 40 |
+
# now with weights
|
| 41 |
+
assert nx.shortest_path(self.cycle, 0, 3, weight="weight") == [0, 1, 2, 3]
|
| 42 |
+
assert nx.shortest_path(self.cycle, 0, 4, weight="weight") == [0, 6, 5, 4]
|
| 43 |
+
validate_grid_path(
|
| 44 |
+
4, 4, 1, 12, nx.shortest_path(self.grid, 1, 12, weight="weight")
|
| 45 |
+
)
|
| 46 |
+
assert nx.shortest_path(self.directed_cycle, 0, 3, weight="weight") == [
|
| 47 |
+
0,
|
| 48 |
+
1,
|
| 49 |
+
2,
|
| 50 |
+
3,
|
| 51 |
+
]
|
| 52 |
+
# weights and method specified
|
| 53 |
+
assert nx.shortest_path(
|
| 54 |
+
self.directed_cycle, 0, 3, weight="weight", method="dijkstra"
|
| 55 |
+
) == [0, 1, 2, 3]
|
| 56 |
+
assert nx.shortest_path(
|
| 57 |
+
self.directed_cycle, 0, 3, weight="weight", method="bellman-ford"
|
| 58 |
+
) == [0, 1, 2, 3]
|
| 59 |
+
# when Dijkstra's will probably (depending on precise implementation)
|
| 60 |
+
# incorrectly return [0, 1, 3] instead
|
| 61 |
+
assert nx.shortest_path(
|
| 62 |
+
self.neg_weights, 0, 3, weight="weight", method="bellman-ford"
|
| 63 |
+
) == [0, 2, 3]
|
| 64 |
+
# confirm bad method rejection
|
| 65 |
+
pytest.raises(ValueError, nx.shortest_path, self.cycle, method="SPAM")
|
| 66 |
+
# confirm absent source rejection
|
| 67 |
+
pytest.raises(nx.NodeNotFound, nx.shortest_path, self.cycle, 8)
|
| 68 |
+
|
| 69 |
+
def test_shortest_path_target(self):
|
| 70 |
+
answer = {0: [0, 1], 1: [1], 2: [2, 1]}
|
| 71 |
+
sp = nx.shortest_path(nx.path_graph(3), target=1)
|
| 72 |
+
assert sp == answer
|
| 73 |
+
# with weights
|
| 74 |
+
sp = nx.shortest_path(nx.path_graph(3), target=1, weight="weight")
|
| 75 |
+
assert sp == answer
|
| 76 |
+
# weights and method specified
|
| 77 |
+
sp = nx.shortest_path(
|
| 78 |
+
nx.path_graph(3), target=1, weight="weight", method="dijkstra"
|
| 79 |
+
)
|
| 80 |
+
assert sp == answer
|
| 81 |
+
sp = nx.shortest_path(
|
| 82 |
+
nx.path_graph(3), target=1, weight="weight", method="bellman-ford"
|
| 83 |
+
)
|
| 84 |
+
assert sp == answer
|
| 85 |
+
|
| 86 |
+
def test_shortest_path_length(self):
|
| 87 |
+
assert nx.shortest_path_length(self.cycle, 0, 3) == 3
|
| 88 |
+
assert nx.shortest_path_length(self.grid, 1, 12) == 5
|
| 89 |
+
assert nx.shortest_path_length(self.directed_cycle, 0, 4) == 4
|
| 90 |
+
# now with weights
|
| 91 |
+
assert nx.shortest_path_length(self.cycle, 0, 3, weight="weight") == 3
|
| 92 |
+
assert nx.shortest_path_length(self.grid, 1, 12, weight="weight") == 5
|
| 93 |
+
assert nx.shortest_path_length(self.directed_cycle, 0, 4, weight="weight") == 4
|
| 94 |
+
# weights and method specified
|
| 95 |
+
assert (
|
| 96 |
+
nx.shortest_path_length(
|
| 97 |
+
self.cycle, 0, 3, weight="weight", method="dijkstra"
|
| 98 |
+
)
|
| 99 |
+
== 3
|
| 100 |
+
)
|
| 101 |
+
assert (
|
| 102 |
+
nx.shortest_path_length(
|
| 103 |
+
self.cycle, 0, 3, weight="weight", method="bellman-ford"
|
| 104 |
+
)
|
| 105 |
+
== 3
|
| 106 |
+
)
|
| 107 |
+
# confirm bad method rejection
|
| 108 |
+
pytest.raises(ValueError, nx.shortest_path_length, self.cycle, method="SPAM")
|
| 109 |
+
# confirm absent source rejection
|
| 110 |
+
pytest.raises(nx.NodeNotFound, nx.shortest_path_length, self.cycle, 8)
|
| 111 |
+
|
| 112 |
+
def test_shortest_path_length_target(self):
|
| 113 |
+
answer = {0: 1, 1: 0, 2: 1}
|
| 114 |
+
sp = dict(nx.shortest_path_length(nx.path_graph(3), target=1))
|
| 115 |
+
assert sp == answer
|
| 116 |
+
# with weights
|
| 117 |
+
sp = nx.shortest_path_length(nx.path_graph(3), target=1, weight="weight")
|
| 118 |
+
assert sp == answer
|
| 119 |
+
# weights and method specified
|
| 120 |
+
sp = nx.shortest_path_length(
|
| 121 |
+
nx.path_graph(3), target=1, weight="weight", method="dijkstra"
|
| 122 |
+
)
|
| 123 |
+
assert sp == answer
|
| 124 |
+
sp = nx.shortest_path_length(
|
| 125 |
+
nx.path_graph(3), target=1, weight="weight", method="bellman-ford"
|
| 126 |
+
)
|
| 127 |
+
assert sp == answer
|
| 128 |
+
|
| 129 |
+
def test_single_source_shortest_path(self):
|
| 130 |
+
p = nx.shortest_path(self.cycle, 0)
|
| 131 |
+
assert p[3] == [0, 1, 2, 3]
|
| 132 |
+
assert p == nx.single_source_shortest_path(self.cycle, 0)
|
| 133 |
+
p = nx.shortest_path(self.grid, 1)
|
| 134 |
+
validate_grid_path(4, 4, 1, 12, p[12])
|
| 135 |
+
# now with weights
|
| 136 |
+
p = nx.shortest_path(self.cycle, 0, weight="weight")
|
| 137 |
+
assert p[3] == [0, 1, 2, 3]
|
| 138 |
+
assert p == nx.single_source_dijkstra_path(self.cycle, 0)
|
| 139 |
+
p = nx.shortest_path(self.grid, 1, weight="weight")
|
| 140 |
+
validate_grid_path(4, 4, 1, 12, p[12])
|
| 141 |
+
# weights and method specified
|
| 142 |
+
p = nx.shortest_path(self.cycle, 0, method="dijkstra", weight="weight")
|
| 143 |
+
assert p[3] == [0, 1, 2, 3]
|
| 144 |
+
assert p == nx.single_source_shortest_path(self.cycle, 0)
|
| 145 |
+
p = nx.shortest_path(self.cycle, 0, method="bellman-ford", weight="weight")
|
| 146 |
+
assert p[3] == [0, 1, 2, 3]
|
| 147 |
+
assert p == nx.single_source_shortest_path(self.cycle, 0)
|
| 148 |
+
|
| 149 |
+
def test_single_source_shortest_path_length(self):
|
| 150 |
+
ans = dict(nx.shortest_path_length(self.cycle, 0))
|
| 151 |
+
assert ans == {0: 0, 1: 1, 2: 2, 3: 3, 4: 3, 5: 2, 6: 1}
|
| 152 |
+
assert ans == dict(nx.single_source_shortest_path_length(self.cycle, 0))
|
| 153 |
+
ans = dict(nx.shortest_path_length(self.grid, 1))
|
| 154 |
+
assert ans[16] == 6
|
| 155 |
+
# now with weights
|
| 156 |
+
ans = dict(nx.shortest_path_length(self.cycle, 0, weight="weight"))
|
| 157 |
+
assert ans == {0: 0, 1: 1, 2: 2, 3: 3, 4: 3, 5: 2, 6: 1}
|
| 158 |
+
assert ans == dict(nx.single_source_dijkstra_path_length(self.cycle, 0))
|
| 159 |
+
ans = dict(nx.shortest_path_length(self.grid, 1, weight="weight"))
|
| 160 |
+
assert ans[16] == 6
|
| 161 |
+
# weights and method specified
|
| 162 |
+
ans = dict(
|
| 163 |
+
nx.shortest_path_length(self.cycle, 0, weight="weight", method="dijkstra")
|
| 164 |
+
)
|
| 165 |
+
assert ans == {0: 0, 1: 1, 2: 2, 3: 3, 4: 3, 5: 2, 6: 1}
|
| 166 |
+
assert ans == dict(nx.single_source_dijkstra_path_length(self.cycle, 0))
|
| 167 |
+
ans = dict(
|
| 168 |
+
nx.shortest_path_length(
|
| 169 |
+
self.cycle, 0, weight="weight", method="bellman-ford"
|
| 170 |
+
)
|
| 171 |
+
)
|
| 172 |
+
assert ans == {0: 0, 1: 1, 2: 2, 3: 3, 4: 3, 5: 2, 6: 1}
|
| 173 |
+
assert ans == dict(nx.single_source_bellman_ford_path_length(self.cycle, 0))
|
| 174 |
+
|
| 175 |
+
def test_single_source_all_shortest_paths(self):
|
| 176 |
+
cycle_ans = {0: [[0]], 1: [[0, 1]], 2: [[0, 1, 2], [0, 3, 2]], 3: [[0, 3]]}
|
| 177 |
+
ans = dict(nx.single_source_all_shortest_paths(nx.cycle_graph(4), 0))
|
| 178 |
+
assert sorted(ans[2]) == cycle_ans[2]
|
| 179 |
+
ans = dict(nx.single_source_all_shortest_paths(self.grid, 1))
|
| 180 |
+
grid_ans = [
|
| 181 |
+
[1, 2, 3, 7, 11],
|
| 182 |
+
[1, 2, 6, 7, 11],
|
| 183 |
+
[1, 2, 6, 10, 11],
|
| 184 |
+
[1, 5, 6, 7, 11],
|
| 185 |
+
[1, 5, 6, 10, 11],
|
| 186 |
+
[1, 5, 9, 10, 11],
|
| 187 |
+
]
|
| 188 |
+
assert sorted(ans[11]) == grid_ans
|
| 189 |
+
ans = dict(
|
| 190 |
+
nx.single_source_all_shortest_paths(nx.cycle_graph(4), 0, weight="weight")
|
| 191 |
+
)
|
| 192 |
+
assert sorted(ans[2]) == cycle_ans[2]
|
| 193 |
+
ans = dict(
|
| 194 |
+
nx.single_source_all_shortest_paths(
|
| 195 |
+
nx.cycle_graph(4), 0, method="bellman-ford", weight="weight"
|
| 196 |
+
)
|
| 197 |
+
)
|
| 198 |
+
assert sorted(ans[2]) == cycle_ans[2]
|
| 199 |
+
ans = dict(nx.single_source_all_shortest_paths(self.grid, 1, weight="weight"))
|
| 200 |
+
assert sorted(ans[11]) == grid_ans
|
| 201 |
+
ans = dict(
|
| 202 |
+
nx.single_source_all_shortest_paths(
|
| 203 |
+
self.grid, 1, method="bellman-ford", weight="weight"
|
| 204 |
+
)
|
| 205 |
+
)
|
| 206 |
+
assert sorted(ans[11]) == grid_ans
|
| 207 |
+
G = nx.cycle_graph(4)
|
| 208 |
+
G.add_node(4)
|
| 209 |
+
ans = dict(nx.single_source_all_shortest_paths(G, 0))
|
| 210 |
+
assert sorted(ans[2]) == [[0, 1, 2], [0, 3, 2]]
|
| 211 |
+
ans = dict(nx.single_source_all_shortest_paths(G, 4))
|
| 212 |
+
assert sorted(ans[4]) == [[4]]
|
| 213 |
+
|
| 214 |
+
def test_all_pairs_shortest_path(self):
|
| 215 |
+
# shortest_path w/o source and target will return a generator instead of
|
| 216 |
+
# a dict beginning in version 3.5. Only the first call needs changed here.
|
| 217 |
+
p = nx.shortest_path(self.cycle)
|
| 218 |
+
assert p[0][3] == [0, 1, 2, 3]
|
| 219 |
+
assert p == dict(nx.all_pairs_shortest_path(self.cycle))
|
| 220 |
+
p = dict(nx.shortest_path(self.grid))
|
| 221 |
+
validate_grid_path(4, 4, 1, 12, p[1][12])
|
| 222 |
+
# now with weights
|
| 223 |
+
p = dict(nx.shortest_path(self.cycle, weight="weight"))
|
| 224 |
+
assert p[0][3] == [0, 1, 2, 3]
|
| 225 |
+
assert p == dict(nx.all_pairs_dijkstra_path(self.cycle))
|
| 226 |
+
p = dict(nx.shortest_path(self.grid, weight="weight"))
|
| 227 |
+
validate_grid_path(4, 4, 1, 12, p[1][12])
|
| 228 |
+
# weights and method specified
|
| 229 |
+
p = dict(nx.shortest_path(self.cycle, weight="weight", method="dijkstra"))
|
| 230 |
+
assert p[0][3] == [0, 1, 2, 3]
|
| 231 |
+
assert p == dict(nx.all_pairs_dijkstra_path(self.cycle))
|
| 232 |
+
p = dict(nx.shortest_path(self.cycle, weight="weight", method="bellman-ford"))
|
| 233 |
+
assert p[0][3] == [0, 1, 2, 3]
|
| 234 |
+
assert p == dict(nx.all_pairs_bellman_ford_path(self.cycle))
|
| 235 |
+
|
| 236 |
+
def test_all_pairs_shortest_path_length(self):
|
| 237 |
+
ans = dict(nx.shortest_path_length(self.cycle))
|
| 238 |
+
assert ans[0] == {0: 0, 1: 1, 2: 2, 3: 3, 4: 3, 5: 2, 6: 1}
|
| 239 |
+
assert ans == dict(nx.all_pairs_shortest_path_length(self.cycle))
|
| 240 |
+
ans = dict(nx.shortest_path_length(self.grid))
|
| 241 |
+
assert ans[1][16] == 6
|
| 242 |
+
# now with weights
|
| 243 |
+
ans = dict(nx.shortest_path_length(self.cycle, weight="weight"))
|
| 244 |
+
assert ans[0] == {0: 0, 1: 1, 2: 2, 3: 3, 4: 3, 5: 2, 6: 1}
|
| 245 |
+
assert ans == dict(nx.all_pairs_dijkstra_path_length(self.cycle))
|
| 246 |
+
ans = dict(nx.shortest_path_length(self.grid, weight="weight"))
|
| 247 |
+
assert ans[1][16] == 6
|
| 248 |
+
# weights and method specified
|
| 249 |
+
ans = dict(
|
| 250 |
+
nx.shortest_path_length(self.cycle, weight="weight", method="dijkstra")
|
| 251 |
+
)
|
| 252 |
+
assert ans[0] == {0: 0, 1: 1, 2: 2, 3: 3, 4: 3, 5: 2, 6: 1}
|
| 253 |
+
assert ans == dict(nx.all_pairs_dijkstra_path_length(self.cycle))
|
| 254 |
+
ans = dict(
|
| 255 |
+
nx.shortest_path_length(self.cycle, weight="weight", method="bellman-ford")
|
| 256 |
+
)
|
| 257 |
+
assert ans[0] == {0: 0, 1: 1, 2: 2, 3: 3, 4: 3, 5: 2, 6: 1}
|
| 258 |
+
assert ans == dict(nx.all_pairs_bellman_ford_path_length(self.cycle))
|
| 259 |
+
|
| 260 |
+
def test_all_pairs_all_shortest_paths(self):
|
| 261 |
+
ans = dict(nx.all_pairs_all_shortest_paths(nx.cycle_graph(4)))
|
| 262 |
+
assert sorted(ans[1][3]) == [[1, 0, 3], [1, 2, 3]]
|
| 263 |
+
ans = dict(nx.all_pairs_all_shortest_paths(nx.cycle_graph(4)), weight="weight")
|
| 264 |
+
assert sorted(ans[1][3]) == [[1, 0, 3], [1, 2, 3]]
|
| 265 |
+
ans = dict(
|
| 266 |
+
nx.all_pairs_all_shortest_paths(nx.cycle_graph(4)),
|
| 267 |
+
method="bellman-ford",
|
| 268 |
+
weight="weight",
|
| 269 |
+
)
|
| 270 |
+
assert sorted(ans[1][3]) == [[1, 0, 3], [1, 2, 3]]
|
| 271 |
+
G = nx.cycle_graph(4)
|
| 272 |
+
G.add_node(4)
|
| 273 |
+
ans = dict(nx.all_pairs_all_shortest_paths(G))
|
| 274 |
+
assert sorted(ans[4][4]) == [[4]]
|
| 275 |
+
|
| 276 |
+
def test_has_path(self):
|
| 277 |
+
G = nx.Graph()
|
| 278 |
+
nx.add_path(G, range(3))
|
| 279 |
+
nx.add_path(G, range(3, 5))
|
| 280 |
+
assert nx.has_path(G, 0, 2)
|
| 281 |
+
assert not nx.has_path(G, 0, 4)
|
| 282 |
+
|
| 283 |
+
def test_has_path_singleton(self):
|
| 284 |
+
G = nx.empty_graph(1)
|
| 285 |
+
assert nx.has_path(G, 0, 0)
|
| 286 |
+
|
| 287 |
+
def test_all_shortest_paths(self):
|
| 288 |
+
G = nx.Graph()
|
| 289 |
+
nx.add_path(G, [0, 1, 2, 3])
|
| 290 |
+
nx.add_path(G, [0, 10, 20, 3])
|
| 291 |
+
assert [[0, 1, 2, 3], [0, 10, 20, 3]] == sorted(nx.all_shortest_paths(G, 0, 3))
|
| 292 |
+
# with weights
|
| 293 |
+
G = nx.Graph()
|
| 294 |
+
nx.add_path(G, [0, 1, 2, 3])
|
| 295 |
+
nx.add_path(G, [0, 10, 20, 3])
|
| 296 |
+
assert [[0, 1, 2, 3], [0, 10, 20, 3]] == sorted(
|
| 297 |
+
nx.all_shortest_paths(G, 0, 3, weight="weight")
|
| 298 |
+
)
|
| 299 |
+
# weights and method specified
|
| 300 |
+
G = nx.Graph()
|
| 301 |
+
nx.add_path(G, [0, 1, 2, 3])
|
| 302 |
+
nx.add_path(G, [0, 10, 20, 3])
|
| 303 |
+
assert [[0, 1, 2, 3], [0, 10, 20, 3]] == sorted(
|
| 304 |
+
nx.all_shortest_paths(G, 0, 3, weight="weight", method="dijkstra")
|
| 305 |
+
)
|
| 306 |
+
G = nx.Graph()
|
| 307 |
+
nx.add_path(G, [0, 1, 2, 3])
|
| 308 |
+
nx.add_path(G, [0, 10, 20, 3])
|
| 309 |
+
assert [[0, 1, 2, 3], [0, 10, 20, 3]] == sorted(
|
| 310 |
+
nx.all_shortest_paths(G, 0, 3, weight="weight", method="bellman-ford")
|
| 311 |
+
)
|
| 312 |
+
|
| 313 |
+
def test_all_shortest_paths_raise(self):
|
| 314 |
+
with pytest.raises(nx.NetworkXNoPath):
|
| 315 |
+
G = nx.path_graph(4)
|
| 316 |
+
G.add_node(4)
|
| 317 |
+
list(nx.all_shortest_paths(G, 0, 4))
|
| 318 |
+
|
| 319 |
+
def test_bad_method(self):
|
| 320 |
+
with pytest.raises(ValueError):
|
| 321 |
+
G = nx.path_graph(2)
|
| 322 |
+
list(nx.all_shortest_paths(G, 0, 1, weight="weight", method="SPAM"))
|
| 323 |
+
|
| 324 |
+
def test_single_source_all_shortest_paths_bad_method(self):
|
| 325 |
+
with pytest.raises(ValueError):
|
| 326 |
+
G = nx.path_graph(2)
|
| 327 |
+
dict(
|
| 328 |
+
nx.single_source_all_shortest_paths(
|
| 329 |
+
G, 0, weight="weight", method="SPAM"
|
| 330 |
+
)
|
| 331 |
+
)
|
| 332 |
+
|
| 333 |
+
def test_all_shortest_paths_zero_weight_edge(self):
|
| 334 |
+
g = nx.Graph()
|
| 335 |
+
nx.add_path(g, [0, 1, 3])
|
| 336 |
+
nx.add_path(g, [0, 1, 2, 3])
|
| 337 |
+
g.edges[1, 2]["weight"] = 0
|
| 338 |
+
paths30d = list(
|
| 339 |
+
nx.all_shortest_paths(g, 3, 0, weight="weight", method="dijkstra")
|
| 340 |
+
)
|
| 341 |
+
paths03d = list(
|
| 342 |
+
nx.all_shortest_paths(g, 0, 3, weight="weight", method="dijkstra")
|
| 343 |
+
)
|
| 344 |
+
paths30b = list(
|
| 345 |
+
nx.all_shortest_paths(g, 3, 0, weight="weight", method="bellman-ford")
|
| 346 |
+
)
|
| 347 |
+
paths03b = list(
|
| 348 |
+
nx.all_shortest_paths(g, 0, 3, weight="weight", method="bellman-ford")
|
| 349 |
+
)
|
| 350 |
+
assert sorted(paths03d) == sorted(p[::-1] for p in paths30d)
|
| 351 |
+
assert sorted(paths03d) == sorted(p[::-1] for p in paths30b)
|
| 352 |
+
assert sorted(paths03b) == sorted(p[::-1] for p in paths30b)
|
| 353 |
+
|
| 354 |
+
|
| 355 |
+
class TestAverageShortestPathLength:
|
| 356 |
+
def test_cycle_graph(self):
|
| 357 |
+
ans = nx.average_shortest_path_length(nx.cycle_graph(7))
|
| 358 |
+
assert ans == pytest.approx(2, abs=1e-7)
|
| 359 |
+
|
| 360 |
+
def test_path_graph(self):
|
| 361 |
+
ans = nx.average_shortest_path_length(nx.path_graph(5))
|
| 362 |
+
assert ans == pytest.approx(2, abs=1e-7)
|
| 363 |
+
|
| 364 |
+
def test_weighted(self):
|
| 365 |
+
G = nx.Graph()
|
| 366 |
+
nx.add_cycle(G, range(7), weight=2)
|
| 367 |
+
ans = nx.average_shortest_path_length(G, weight="weight")
|
| 368 |
+
assert ans == pytest.approx(4, abs=1e-7)
|
| 369 |
+
G = nx.Graph()
|
| 370 |
+
nx.add_path(G, range(5), weight=2)
|
| 371 |
+
ans = nx.average_shortest_path_length(G, weight="weight")
|
| 372 |
+
assert ans == pytest.approx(4, abs=1e-7)
|
| 373 |
+
|
| 374 |
+
def test_specified_methods(self):
|
| 375 |
+
G = nx.Graph()
|
| 376 |
+
nx.add_cycle(G, range(7), weight=2)
|
| 377 |
+
ans = nx.average_shortest_path_length(G, weight="weight", method="dijkstra")
|
| 378 |
+
assert ans == pytest.approx(4, abs=1e-7)
|
| 379 |
+
ans = nx.average_shortest_path_length(G, weight="weight", method="bellman-ford")
|
| 380 |
+
assert ans == pytest.approx(4, abs=1e-7)
|
| 381 |
+
ans = nx.average_shortest_path_length(
|
| 382 |
+
G, weight="weight", method="floyd-warshall"
|
| 383 |
+
)
|
| 384 |
+
assert ans == pytest.approx(4, abs=1e-7)
|
| 385 |
+
|
| 386 |
+
G = nx.Graph()
|
| 387 |
+
nx.add_path(G, range(5), weight=2)
|
| 388 |
+
ans = nx.average_shortest_path_length(G, weight="weight", method="dijkstra")
|
| 389 |
+
assert ans == pytest.approx(4, abs=1e-7)
|
| 390 |
+
ans = nx.average_shortest_path_length(G, weight="weight", method="bellman-ford")
|
| 391 |
+
assert ans == pytest.approx(4, abs=1e-7)
|
| 392 |
+
ans = nx.average_shortest_path_length(
|
| 393 |
+
G, weight="weight", method="floyd-warshall"
|
| 394 |
+
)
|
| 395 |
+
assert ans == pytest.approx(4, abs=1e-7)
|
| 396 |
+
|
| 397 |
+
def test_directed_not_strongly_connected(self):
|
| 398 |
+
G = nx.DiGraph([(0, 1)])
|
| 399 |
+
with pytest.raises(nx.NetworkXError, match="Graph is not strongly connected"):
|
| 400 |
+
nx.average_shortest_path_length(G)
|
| 401 |
+
|
| 402 |
+
def test_undirected_not_connected(self):
|
| 403 |
+
g = nx.Graph()
|
| 404 |
+
g.add_nodes_from(range(3))
|
| 405 |
+
g.add_edge(0, 1)
|
| 406 |
+
pytest.raises(nx.NetworkXError, nx.average_shortest_path_length, g)
|
| 407 |
+
|
| 408 |
+
def test_trivial_graph(self):
|
| 409 |
+
"""Tests that the trivial graph has average path length zero,
|
| 410 |
+
since there is exactly one path of length zero in the trivial
|
| 411 |
+
graph.
|
| 412 |
+
|
| 413 |
+
For more information, see issue #1960.
|
| 414 |
+
|
| 415 |
+
"""
|
| 416 |
+
G = nx.trivial_graph()
|
| 417 |
+
assert nx.average_shortest_path_length(G) == 0
|
| 418 |
+
|
| 419 |
+
def test_null_graph(self):
|
| 420 |
+
with pytest.raises(nx.NetworkXPointlessConcept):
|
| 421 |
+
nx.average_shortest_path_length(nx.null_graph())
|
| 422 |
+
|
| 423 |
+
def test_bad_method(self):
|
| 424 |
+
with pytest.raises(ValueError):
|
| 425 |
+
G = nx.path_graph(2)
|
| 426 |
+
nx.average_shortest_path_length(G, weight="weight", method="SPAM")
|
| 427 |
+
|
| 428 |
+
|
| 429 |
+
class TestAverageShortestPathLengthNumpy:
|
| 430 |
+
@classmethod
|
| 431 |
+
def setup_class(cls):
|
| 432 |
+
global np
|
| 433 |
+
import pytest
|
| 434 |
+
|
| 435 |
+
np = pytest.importorskip("numpy")
|
| 436 |
+
|
| 437 |
+
def test_specified_methods_numpy(self):
|
| 438 |
+
G = nx.Graph()
|
| 439 |
+
nx.add_cycle(G, range(7), weight=2)
|
| 440 |
+
ans = nx.average_shortest_path_length(
|
| 441 |
+
G, weight="weight", method="floyd-warshall-numpy"
|
| 442 |
+
)
|
| 443 |
+
np.testing.assert_almost_equal(ans, 4)
|
| 444 |
+
|
| 445 |
+
G = nx.Graph()
|
| 446 |
+
nx.add_path(G, range(5), weight=2)
|
| 447 |
+
ans = nx.average_shortest_path_length(
|
| 448 |
+
G, weight="weight", method="floyd-warshall-numpy"
|
| 449 |
+
)
|
| 450 |
+
np.testing.assert_almost_equal(ans, 4)
|
code/LaDi-RL-old-qwen-cod/LaDi-RL-old-qwen-cod/venv/lib64/python3.10/site-packages/networkx/algorithms/shortest_paths/tests/test_unweighted.py
ADDED
|
@@ -0,0 +1,149 @@
|
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|
|
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|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
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|
|
|
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|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
import pytest
|
| 2 |
+
|
| 3 |
+
import networkx as nx
|
| 4 |
+
|
| 5 |
+
|
| 6 |
+
def validate_grid_path(r, c, s, t, p):
|
| 7 |
+
assert isinstance(p, list)
|
| 8 |
+
assert p[0] == s
|
| 9 |
+
assert p[-1] == t
|
| 10 |
+
s = ((s - 1) // c, (s - 1) % c)
|
| 11 |
+
t = ((t - 1) // c, (t - 1) % c)
|
| 12 |
+
assert len(p) == abs(t[0] - s[0]) + abs(t[1] - s[1]) + 1
|
| 13 |
+
p = [((u - 1) // c, (u - 1) % c) for u in p]
|
| 14 |
+
for u in p:
|
| 15 |
+
assert 0 <= u[0] < r
|
| 16 |
+
assert 0 <= u[1] < c
|
| 17 |
+
for u, v in zip(p[:-1], p[1:]):
|
| 18 |
+
assert (abs(v[0] - u[0]), abs(v[1] - u[1])) in [(0, 1), (1, 0)]
|
| 19 |
+
|
| 20 |
+
|
| 21 |
+
class TestUnweightedPath:
|
| 22 |
+
@classmethod
|
| 23 |
+
def setup_class(cls):
|
| 24 |
+
from networkx import convert_node_labels_to_integers as cnlti
|
| 25 |
+
|
| 26 |
+
cls.grid = cnlti(nx.grid_2d_graph(4, 4), first_label=1, ordering="sorted")
|
| 27 |
+
cls.cycle = nx.cycle_graph(7)
|
| 28 |
+
cls.directed_cycle = nx.cycle_graph(7, create_using=nx.DiGraph())
|
| 29 |
+
|
| 30 |
+
def test_bidirectional_shortest_path(self):
|
| 31 |
+
assert nx.bidirectional_shortest_path(self.cycle, 0, 3) == [0, 1, 2, 3]
|
| 32 |
+
assert nx.bidirectional_shortest_path(self.cycle, 0, 4) == [0, 6, 5, 4]
|
| 33 |
+
validate_grid_path(
|
| 34 |
+
4, 4, 1, 12, nx.bidirectional_shortest_path(self.grid, 1, 12)
|
| 35 |
+
)
|
| 36 |
+
assert nx.bidirectional_shortest_path(self.directed_cycle, 0, 3) == [0, 1, 2, 3]
|
| 37 |
+
# test source = target
|
| 38 |
+
assert nx.bidirectional_shortest_path(self.cycle, 3, 3) == [3]
|
| 39 |
+
|
| 40 |
+
@pytest.mark.parametrize(
|
| 41 |
+
("src", "tgt"),
|
| 42 |
+
(
|
| 43 |
+
(8, 3), # source not in graph
|
| 44 |
+
(3, 8), # target not in graph
|
| 45 |
+
(8, 10), # neither source nor target in graph
|
| 46 |
+
(8, 8), # src == tgt, neither in graph - tests order of input checks
|
| 47 |
+
),
|
| 48 |
+
)
|
| 49 |
+
def test_bidirectional_shortest_path_src_tgt_not_in_graph(self, src, tgt):
|
| 50 |
+
with pytest.raises(
|
| 51 |
+
nx.NodeNotFound,
|
| 52 |
+
match=f"(Source {src}|Target {tgt}) is not in G",
|
| 53 |
+
):
|
| 54 |
+
nx.bidirectional_shortest_path(self.cycle, src, tgt)
|
| 55 |
+
|
| 56 |
+
def test_shortest_path_length(self):
|
| 57 |
+
assert nx.shortest_path_length(self.cycle, 0, 3) == 3
|
| 58 |
+
assert nx.shortest_path_length(self.grid, 1, 12) == 5
|
| 59 |
+
assert nx.shortest_path_length(self.directed_cycle, 0, 4) == 4
|
| 60 |
+
# now with weights
|
| 61 |
+
assert nx.shortest_path_length(self.cycle, 0, 3, weight=True) == 3
|
| 62 |
+
assert nx.shortest_path_length(self.grid, 1, 12, weight=True) == 5
|
| 63 |
+
assert nx.shortest_path_length(self.directed_cycle, 0, 4, weight=True) == 4
|
| 64 |
+
|
| 65 |
+
def test_single_source_shortest_path(self):
|
| 66 |
+
p = nx.single_source_shortest_path(self.directed_cycle, 3)
|
| 67 |
+
assert p[0] == [3, 4, 5, 6, 0]
|
| 68 |
+
p = nx.single_source_shortest_path(self.cycle, 0)
|
| 69 |
+
assert p[3] == [0, 1, 2, 3]
|
| 70 |
+
p = nx.single_source_shortest_path(self.cycle, 0, cutoff=0)
|
| 71 |
+
assert p == {0: [0]}
|
| 72 |
+
|
| 73 |
+
def test_single_source_shortest_path_length(self):
|
| 74 |
+
pl = nx.single_source_shortest_path_length
|
| 75 |
+
lengths = {0: 0, 1: 1, 2: 2, 3: 3, 4: 3, 5: 2, 6: 1}
|
| 76 |
+
assert dict(pl(self.cycle, 0)) == lengths
|
| 77 |
+
lengths = {0: 0, 1: 1, 2: 2, 3: 3, 4: 4, 5: 5, 6: 6}
|
| 78 |
+
assert dict(pl(self.directed_cycle, 0)) == lengths
|
| 79 |
+
|
| 80 |
+
def test_single_target_shortest_path(self):
|
| 81 |
+
p = nx.single_target_shortest_path(self.directed_cycle, 0)
|
| 82 |
+
assert p[3] == [3, 4, 5, 6, 0]
|
| 83 |
+
p = nx.single_target_shortest_path(self.cycle, 0)
|
| 84 |
+
assert p[3] == [3, 2, 1, 0]
|
| 85 |
+
p = nx.single_target_shortest_path(self.cycle, 0, cutoff=0)
|
| 86 |
+
assert p == {0: [0]}
|
| 87 |
+
# test missing targets
|
| 88 |
+
target = 8
|
| 89 |
+
with pytest.raises(nx.NodeNotFound, match=f"Target {target} not in G"):
|
| 90 |
+
nx.single_target_shortest_path(self.cycle, target)
|
| 91 |
+
|
| 92 |
+
def test_single_target_shortest_path_length(self):
|
| 93 |
+
pl = nx.single_target_shortest_path_length
|
| 94 |
+
lengths = {0: 0, 1: 1, 2: 2, 3: 3, 4: 3, 5: 2, 6: 1}
|
| 95 |
+
assert dict(pl(self.cycle, 0)) == lengths
|
| 96 |
+
lengths = {0: 0, 1: 6, 2: 5, 3: 4, 4: 3, 5: 2, 6: 1}
|
| 97 |
+
assert dict(pl(self.directed_cycle, 0)) == lengths
|
| 98 |
+
# test missing targets
|
| 99 |
+
target = 8
|
| 100 |
+
with pytest.raises(nx.NodeNotFound, match=f"Target {target} is not in G"):
|
| 101 |
+
nx.single_target_shortest_path_length(self.cycle, target)
|
| 102 |
+
|
| 103 |
+
def test_all_pairs_shortest_path(self):
|
| 104 |
+
p = dict(nx.all_pairs_shortest_path(self.cycle))
|
| 105 |
+
assert p[0][3] == [0, 1, 2, 3]
|
| 106 |
+
p = dict(nx.all_pairs_shortest_path(self.grid))
|
| 107 |
+
validate_grid_path(4, 4, 1, 12, p[1][12])
|
| 108 |
+
|
| 109 |
+
def test_all_pairs_shortest_path_length(self):
|
| 110 |
+
l = dict(nx.all_pairs_shortest_path_length(self.cycle))
|
| 111 |
+
assert l[0] == {0: 0, 1: 1, 2: 2, 3: 3, 4: 3, 5: 2, 6: 1}
|
| 112 |
+
l = dict(nx.all_pairs_shortest_path_length(self.grid))
|
| 113 |
+
assert l[1][16] == 6
|
| 114 |
+
|
| 115 |
+
def test_predecessor_path(self):
|
| 116 |
+
G = nx.path_graph(4)
|
| 117 |
+
assert nx.predecessor(G, 0) == {0: [], 1: [0], 2: [1], 3: [2]}
|
| 118 |
+
assert nx.predecessor(G, 0, 3) == [2]
|
| 119 |
+
|
| 120 |
+
def test_predecessor_cycle(self):
|
| 121 |
+
G = nx.cycle_graph(4)
|
| 122 |
+
pred = nx.predecessor(G, 0)
|
| 123 |
+
assert pred[0] == []
|
| 124 |
+
assert pred[1] == [0]
|
| 125 |
+
assert pred[2] in [[1, 3], [3, 1]]
|
| 126 |
+
assert pred[3] == [0]
|
| 127 |
+
|
| 128 |
+
def test_predecessor_cutoff(self):
|
| 129 |
+
G = nx.path_graph(4)
|
| 130 |
+
p = nx.predecessor(G, 0, 3)
|
| 131 |
+
assert 4 not in p
|
| 132 |
+
|
| 133 |
+
def test_predecessor_target(self):
|
| 134 |
+
G = nx.path_graph(4)
|
| 135 |
+
p = nx.predecessor(G, 0, 3)
|
| 136 |
+
assert p == [2]
|
| 137 |
+
p = nx.predecessor(G, 0, 3, cutoff=2)
|
| 138 |
+
assert p == []
|
| 139 |
+
p, s = nx.predecessor(G, 0, 3, return_seen=True)
|
| 140 |
+
assert p == [2]
|
| 141 |
+
assert s == 3
|
| 142 |
+
p, s = nx.predecessor(G, 0, 3, cutoff=2, return_seen=True)
|
| 143 |
+
assert p == []
|
| 144 |
+
assert s == -1
|
| 145 |
+
|
| 146 |
+
def test_predecessor_missing_source(self):
|
| 147 |
+
source = 8
|
| 148 |
+
with pytest.raises(nx.NodeNotFound, match=f"Source {source} not in G"):
|
| 149 |
+
nx.predecessor(self.cycle, source)
|
code/LaDi-RL-old-qwen-cod/LaDi-RL-old-qwen-cod/venv/lib64/python3.10/site-packages/networkx/algorithms/shortest_paths/tests/test_weighted.py
ADDED
|
@@ -0,0 +1,972 @@
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|
| 1 |
+
import pytest
|
| 2 |
+
|
| 3 |
+
import networkx as nx
|
| 4 |
+
from networkx.utils import pairwise
|
| 5 |
+
|
| 6 |
+
|
| 7 |
+
def validate_path(G, s, t, soln_len, path, weight="weight"):
|
| 8 |
+
assert path[0] == s
|
| 9 |
+
assert path[-1] == t
|
| 10 |
+
|
| 11 |
+
if callable(weight):
|
| 12 |
+
weight_f = weight
|
| 13 |
+
else:
|
| 14 |
+
if G.is_multigraph():
|
| 15 |
+
|
| 16 |
+
def weight_f(u, v, d):
|
| 17 |
+
return min(e.get(weight, 1) for e in d.values())
|
| 18 |
+
|
| 19 |
+
else:
|
| 20 |
+
|
| 21 |
+
def weight_f(u, v, d):
|
| 22 |
+
return d.get(weight, 1)
|
| 23 |
+
|
| 24 |
+
computed = sum(weight_f(u, v, G[u][v]) for u, v in pairwise(path))
|
| 25 |
+
assert soln_len == computed
|
| 26 |
+
|
| 27 |
+
|
| 28 |
+
def validate_length_path(G, s, t, soln_len, length, path, weight="weight"):
|
| 29 |
+
assert soln_len == length
|
| 30 |
+
validate_path(G, s, t, length, path, weight=weight)
|
| 31 |
+
|
| 32 |
+
|
| 33 |
+
class WeightedTestBase:
|
| 34 |
+
"""Base class for test classes that test functions for computing
|
| 35 |
+
shortest paths in weighted graphs.
|
| 36 |
+
|
| 37 |
+
"""
|
| 38 |
+
|
| 39 |
+
def setup_method(self):
|
| 40 |
+
"""Creates some graphs for use in the unit tests."""
|
| 41 |
+
cnlti = nx.convert_node_labels_to_integers
|
| 42 |
+
self.grid = cnlti(nx.grid_2d_graph(4, 4), first_label=1, ordering="sorted")
|
| 43 |
+
self.cycle = nx.cycle_graph(7)
|
| 44 |
+
self.directed_cycle = nx.cycle_graph(7, create_using=nx.DiGraph())
|
| 45 |
+
self.XG = nx.DiGraph()
|
| 46 |
+
self.XG.add_weighted_edges_from(
|
| 47 |
+
[
|
| 48 |
+
("s", "u", 10),
|
| 49 |
+
("s", "x", 5),
|
| 50 |
+
("u", "v", 1),
|
| 51 |
+
("u", "x", 2),
|
| 52 |
+
("v", "y", 1),
|
| 53 |
+
("x", "u", 3),
|
| 54 |
+
("x", "v", 5),
|
| 55 |
+
("x", "y", 2),
|
| 56 |
+
("y", "s", 7),
|
| 57 |
+
("y", "v", 6),
|
| 58 |
+
]
|
| 59 |
+
)
|
| 60 |
+
self.MXG = nx.MultiDiGraph(self.XG)
|
| 61 |
+
self.MXG.add_edge("s", "u", weight=15)
|
| 62 |
+
self.XG2 = nx.DiGraph()
|
| 63 |
+
self.XG2.add_weighted_edges_from(
|
| 64 |
+
[
|
| 65 |
+
[1, 4, 1],
|
| 66 |
+
[4, 5, 1],
|
| 67 |
+
[5, 6, 1],
|
| 68 |
+
[6, 3, 1],
|
| 69 |
+
[1, 3, 50],
|
| 70 |
+
[1, 2, 100],
|
| 71 |
+
[2, 3, 100],
|
| 72 |
+
]
|
| 73 |
+
)
|
| 74 |
+
|
| 75 |
+
self.XG3 = nx.Graph()
|
| 76 |
+
self.XG3.add_weighted_edges_from(
|
| 77 |
+
[[0, 1, 2], [1, 2, 12], [2, 3, 1], [3, 4, 5], [4, 5, 1], [5, 0, 10]]
|
| 78 |
+
)
|
| 79 |
+
|
| 80 |
+
self.XG4 = nx.Graph()
|
| 81 |
+
self.XG4.add_weighted_edges_from(
|
| 82 |
+
[
|
| 83 |
+
[0, 1, 2],
|
| 84 |
+
[1, 2, 2],
|
| 85 |
+
[2, 3, 1],
|
| 86 |
+
[3, 4, 1],
|
| 87 |
+
[4, 5, 1],
|
| 88 |
+
[5, 6, 1],
|
| 89 |
+
[6, 7, 1],
|
| 90 |
+
[7, 0, 1],
|
| 91 |
+
]
|
| 92 |
+
)
|
| 93 |
+
self.MXG4 = nx.MultiGraph(self.XG4)
|
| 94 |
+
self.MXG4.add_edge(0, 1, weight=3)
|
| 95 |
+
self.G = nx.DiGraph() # no weights
|
| 96 |
+
self.G.add_edges_from(
|
| 97 |
+
[
|
| 98 |
+
("s", "u"),
|
| 99 |
+
("s", "x"),
|
| 100 |
+
("u", "v"),
|
| 101 |
+
("u", "x"),
|
| 102 |
+
("v", "y"),
|
| 103 |
+
("x", "u"),
|
| 104 |
+
("x", "v"),
|
| 105 |
+
("x", "y"),
|
| 106 |
+
("y", "s"),
|
| 107 |
+
("y", "v"),
|
| 108 |
+
]
|
| 109 |
+
)
|
| 110 |
+
|
| 111 |
+
|
| 112 |
+
class TestWeightedPath(WeightedTestBase):
|
| 113 |
+
def test_dijkstra(self):
|
| 114 |
+
(D, P) = nx.single_source_dijkstra(self.XG, "s")
|
| 115 |
+
validate_path(self.XG, "s", "v", 9, P["v"])
|
| 116 |
+
assert D["v"] == 9
|
| 117 |
+
|
| 118 |
+
validate_path(
|
| 119 |
+
self.XG, "s", "v", 9, nx.single_source_dijkstra_path(self.XG, "s")["v"]
|
| 120 |
+
)
|
| 121 |
+
assert dict(nx.single_source_dijkstra_path_length(self.XG, "s"))["v"] == 9
|
| 122 |
+
|
| 123 |
+
validate_path(
|
| 124 |
+
self.XG, "s", "v", 9, nx.single_source_dijkstra(self.XG, "s")[1]["v"]
|
| 125 |
+
)
|
| 126 |
+
validate_path(
|
| 127 |
+
self.MXG, "s", "v", 9, nx.single_source_dijkstra_path(self.MXG, "s")["v"]
|
| 128 |
+
)
|
| 129 |
+
|
| 130 |
+
GG = self.XG.to_undirected()
|
| 131 |
+
# make sure we get lower weight
|
| 132 |
+
# to_undirected might choose either edge with weight 2 or weight 3
|
| 133 |
+
GG["u"]["x"]["weight"] = 2
|
| 134 |
+
(D, P) = nx.single_source_dijkstra(GG, "s")
|
| 135 |
+
validate_path(GG, "s", "v", 8, P["v"])
|
| 136 |
+
assert D["v"] == 8 # uses lower weight of 2 on u<->x edge
|
| 137 |
+
validate_path(GG, "s", "v", 8, nx.dijkstra_path(GG, "s", "v"))
|
| 138 |
+
assert nx.dijkstra_path_length(GG, "s", "v") == 8
|
| 139 |
+
|
| 140 |
+
validate_path(self.XG2, 1, 3, 4, nx.dijkstra_path(self.XG2, 1, 3))
|
| 141 |
+
validate_path(self.XG3, 0, 3, 15, nx.dijkstra_path(self.XG3, 0, 3))
|
| 142 |
+
assert nx.dijkstra_path_length(self.XG3, 0, 3) == 15
|
| 143 |
+
validate_path(self.XG4, 0, 2, 4, nx.dijkstra_path(self.XG4, 0, 2))
|
| 144 |
+
assert nx.dijkstra_path_length(self.XG4, 0, 2) == 4
|
| 145 |
+
validate_path(self.MXG4, 0, 2, 4, nx.dijkstra_path(self.MXG4, 0, 2))
|
| 146 |
+
validate_path(
|
| 147 |
+
self.G, "s", "v", 2, nx.single_source_dijkstra(self.G, "s", "v")[1]
|
| 148 |
+
)
|
| 149 |
+
validate_path(
|
| 150 |
+
self.G, "s", "v", 2, nx.single_source_dijkstra(self.G, "s")[1]["v"]
|
| 151 |
+
)
|
| 152 |
+
|
| 153 |
+
validate_path(self.G, "s", "v", 2, nx.dijkstra_path(self.G, "s", "v"))
|
| 154 |
+
assert nx.dijkstra_path_length(self.G, "s", "v") == 2
|
| 155 |
+
|
| 156 |
+
# NetworkXError: node s not reachable from moon
|
| 157 |
+
pytest.raises(nx.NetworkXNoPath, nx.dijkstra_path, self.G, "s", "moon")
|
| 158 |
+
pytest.raises(nx.NetworkXNoPath, nx.dijkstra_path_length, self.G, "s", "moon")
|
| 159 |
+
|
| 160 |
+
validate_path(self.cycle, 0, 3, 3, nx.dijkstra_path(self.cycle, 0, 3))
|
| 161 |
+
validate_path(self.cycle, 0, 4, 3, nx.dijkstra_path(self.cycle, 0, 4))
|
| 162 |
+
|
| 163 |
+
assert nx.single_source_dijkstra(self.cycle, 0, 0) == (0, [0])
|
| 164 |
+
|
| 165 |
+
def test_bidirectional_dijkstra(self):
|
| 166 |
+
validate_length_path(
|
| 167 |
+
self.XG, "s", "v", 9, *nx.bidirectional_dijkstra(self.XG, "s", "v")
|
| 168 |
+
)
|
| 169 |
+
validate_length_path(
|
| 170 |
+
self.G, "s", "v", 2, *nx.bidirectional_dijkstra(self.G, "s", "v")
|
| 171 |
+
)
|
| 172 |
+
validate_length_path(
|
| 173 |
+
self.cycle, 0, 3, 3, *nx.bidirectional_dijkstra(self.cycle, 0, 3)
|
| 174 |
+
)
|
| 175 |
+
validate_length_path(
|
| 176 |
+
self.cycle, 0, 4, 3, *nx.bidirectional_dijkstra(self.cycle, 0, 4)
|
| 177 |
+
)
|
| 178 |
+
validate_length_path(
|
| 179 |
+
self.XG3, 0, 3, 15, *nx.bidirectional_dijkstra(self.XG3, 0, 3)
|
| 180 |
+
)
|
| 181 |
+
validate_length_path(
|
| 182 |
+
self.XG4, 0, 2, 4, *nx.bidirectional_dijkstra(self.XG4, 0, 2)
|
| 183 |
+
)
|
| 184 |
+
|
| 185 |
+
# need more tests here
|
| 186 |
+
P = nx.single_source_dijkstra_path(self.XG, "s")["v"]
|
| 187 |
+
validate_path(
|
| 188 |
+
self.XG,
|
| 189 |
+
"s",
|
| 190 |
+
"v",
|
| 191 |
+
sum(self.XG[u][v]["weight"] for u, v in zip(P[:-1], P[1:])),
|
| 192 |
+
nx.dijkstra_path(self.XG, "s", "v"),
|
| 193 |
+
)
|
| 194 |
+
|
| 195 |
+
# check absent source
|
| 196 |
+
G = nx.path_graph(2)
|
| 197 |
+
pytest.raises(nx.NodeNotFound, nx.bidirectional_dijkstra, G, 3, 0)
|
| 198 |
+
|
| 199 |
+
def test_weight_functions(self):
|
| 200 |
+
def heuristic(*z):
|
| 201 |
+
return sum(val**2 for val in z)
|
| 202 |
+
|
| 203 |
+
def getpath(pred, v, s):
|
| 204 |
+
return [v] if v == s else getpath(pred, pred[v], s) + [v]
|
| 205 |
+
|
| 206 |
+
def goldberg_radzik(g, s, t, weight="weight"):
|
| 207 |
+
pred, dist = nx.goldberg_radzik(g, s, weight=weight)
|
| 208 |
+
dist = dist[t]
|
| 209 |
+
return dist, getpath(pred, t, s)
|
| 210 |
+
|
| 211 |
+
def astar(g, s, t, weight="weight"):
|
| 212 |
+
path = nx.astar_path(g, s, t, heuristic, weight=weight)
|
| 213 |
+
dist = nx.astar_path_length(g, s, t, heuristic, weight=weight)
|
| 214 |
+
return dist, path
|
| 215 |
+
|
| 216 |
+
def vlp(G, s, t, l, F, w):
|
| 217 |
+
res = F(G, s, t, weight=w)
|
| 218 |
+
validate_length_path(G, s, t, l, *res, weight=w)
|
| 219 |
+
|
| 220 |
+
G = self.cycle
|
| 221 |
+
s = 6
|
| 222 |
+
t = 4
|
| 223 |
+
path = [6] + list(range(t + 1))
|
| 224 |
+
|
| 225 |
+
def weight(u, v, _):
|
| 226 |
+
return 1 + v**2
|
| 227 |
+
|
| 228 |
+
length = sum(weight(u, v, None) for u, v in pairwise(path))
|
| 229 |
+
vlp(G, s, t, length, nx.bidirectional_dijkstra, weight)
|
| 230 |
+
vlp(G, s, t, length, nx.single_source_dijkstra, weight)
|
| 231 |
+
vlp(G, s, t, length, nx.single_source_bellman_ford, weight)
|
| 232 |
+
vlp(G, s, t, length, goldberg_radzik, weight)
|
| 233 |
+
vlp(G, s, t, length, astar, weight)
|
| 234 |
+
|
| 235 |
+
def weight(u, v, _):
|
| 236 |
+
return 2 ** (u * v)
|
| 237 |
+
|
| 238 |
+
length = sum(weight(u, v, None) for u, v in pairwise(path))
|
| 239 |
+
vlp(G, s, t, length, nx.bidirectional_dijkstra, weight)
|
| 240 |
+
vlp(G, s, t, length, nx.single_source_dijkstra, weight)
|
| 241 |
+
vlp(G, s, t, length, nx.single_source_bellman_ford, weight)
|
| 242 |
+
vlp(G, s, t, length, goldberg_radzik, weight)
|
| 243 |
+
vlp(G, s, t, length, astar, weight)
|
| 244 |
+
|
| 245 |
+
def test_bidirectional_dijkstra_no_path(self):
|
| 246 |
+
with pytest.raises(nx.NetworkXNoPath):
|
| 247 |
+
G = nx.Graph()
|
| 248 |
+
nx.add_path(G, [1, 2, 3])
|
| 249 |
+
nx.add_path(G, [4, 5, 6])
|
| 250 |
+
path = nx.bidirectional_dijkstra(G, 1, 6)
|
| 251 |
+
|
| 252 |
+
@pytest.mark.parametrize(
|
| 253 |
+
"fn",
|
| 254 |
+
(
|
| 255 |
+
nx.dijkstra_path,
|
| 256 |
+
nx.dijkstra_path_length,
|
| 257 |
+
nx.single_source_dijkstra_path,
|
| 258 |
+
nx.single_source_dijkstra_path_length,
|
| 259 |
+
nx.single_source_dijkstra,
|
| 260 |
+
nx.dijkstra_predecessor_and_distance,
|
| 261 |
+
),
|
| 262 |
+
)
|
| 263 |
+
def test_absent_source(self, fn):
|
| 264 |
+
G = nx.path_graph(2)
|
| 265 |
+
with pytest.raises(nx.NodeNotFound):
|
| 266 |
+
fn(G, 3, 0)
|
| 267 |
+
# Test when source == target, which is handled specially by some functions
|
| 268 |
+
with pytest.raises(nx.NodeNotFound):
|
| 269 |
+
fn(G, 3, 3)
|
| 270 |
+
|
| 271 |
+
def test_dijkstra_predecessor1(self):
|
| 272 |
+
G = nx.path_graph(4)
|
| 273 |
+
assert nx.dijkstra_predecessor_and_distance(G, 0) == (
|
| 274 |
+
{0: [], 1: [0], 2: [1], 3: [2]},
|
| 275 |
+
{0: 0, 1: 1, 2: 2, 3: 3},
|
| 276 |
+
)
|
| 277 |
+
|
| 278 |
+
def test_dijkstra_predecessor2(self):
|
| 279 |
+
# 4-cycle
|
| 280 |
+
G = nx.Graph([(0, 1), (1, 2), (2, 3), (3, 0)])
|
| 281 |
+
pred, dist = nx.dijkstra_predecessor_and_distance(G, (0))
|
| 282 |
+
assert pred[0] == []
|
| 283 |
+
assert pred[1] == [0]
|
| 284 |
+
assert pred[2] in [[1, 3], [3, 1]]
|
| 285 |
+
assert pred[3] == [0]
|
| 286 |
+
assert dist == {0: 0, 1: 1, 2: 2, 3: 1}
|
| 287 |
+
|
| 288 |
+
def test_dijkstra_predecessor3(self):
|
| 289 |
+
XG = nx.DiGraph()
|
| 290 |
+
XG.add_weighted_edges_from(
|
| 291 |
+
[
|
| 292 |
+
("s", "u", 10),
|
| 293 |
+
("s", "x", 5),
|
| 294 |
+
("u", "v", 1),
|
| 295 |
+
("u", "x", 2),
|
| 296 |
+
("v", "y", 1),
|
| 297 |
+
("x", "u", 3),
|
| 298 |
+
("x", "v", 5),
|
| 299 |
+
("x", "y", 2),
|
| 300 |
+
("y", "s", 7),
|
| 301 |
+
("y", "v", 6),
|
| 302 |
+
]
|
| 303 |
+
)
|
| 304 |
+
(P, D) = nx.dijkstra_predecessor_and_distance(XG, "s")
|
| 305 |
+
assert P["v"] == ["u"]
|
| 306 |
+
assert D["v"] == 9
|
| 307 |
+
(P, D) = nx.dijkstra_predecessor_and_distance(XG, "s", cutoff=8)
|
| 308 |
+
assert "v" not in D
|
| 309 |
+
|
| 310 |
+
def test_single_source_dijkstra_path_length(self):
|
| 311 |
+
pl = nx.single_source_dijkstra_path_length
|
| 312 |
+
assert dict(pl(self.MXG4, 0))[2] == 4
|
| 313 |
+
spl = pl(self.MXG4, 0, cutoff=2)
|
| 314 |
+
assert 2 not in spl
|
| 315 |
+
|
| 316 |
+
def test_bidirectional_dijkstra_multigraph(self):
|
| 317 |
+
G = nx.MultiGraph()
|
| 318 |
+
G.add_edge("a", "b", weight=10)
|
| 319 |
+
G.add_edge("a", "b", weight=100)
|
| 320 |
+
dp = nx.bidirectional_dijkstra(G, "a", "b")
|
| 321 |
+
assert dp == (10, ["a", "b"])
|
| 322 |
+
|
| 323 |
+
def test_dijkstra_pred_distance_multigraph(self):
|
| 324 |
+
G = nx.MultiGraph()
|
| 325 |
+
G.add_edge("a", "b", key="short", foo=5, weight=100)
|
| 326 |
+
G.add_edge("a", "b", key="long", bar=1, weight=110)
|
| 327 |
+
p, d = nx.dijkstra_predecessor_and_distance(G, "a")
|
| 328 |
+
assert p == {"a": [], "b": ["a"]}
|
| 329 |
+
assert d == {"a": 0, "b": 100}
|
| 330 |
+
|
| 331 |
+
def test_negative_edge_cycle(self):
|
| 332 |
+
G = nx.cycle_graph(5, create_using=nx.DiGraph())
|
| 333 |
+
assert not nx.negative_edge_cycle(G)
|
| 334 |
+
G.add_edge(8, 9, weight=-7)
|
| 335 |
+
G.add_edge(9, 8, weight=3)
|
| 336 |
+
graph_size = len(G)
|
| 337 |
+
assert nx.negative_edge_cycle(G)
|
| 338 |
+
assert graph_size == len(G)
|
| 339 |
+
pytest.raises(ValueError, nx.single_source_dijkstra_path_length, G, 8)
|
| 340 |
+
pytest.raises(ValueError, nx.single_source_dijkstra, G, 8)
|
| 341 |
+
pytest.raises(ValueError, nx.dijkstra_predecessor_and_distance, G, 8)
|
| 342 |
+
G.add_edge(9, 10)
|
| 343 |
+
pytest.raises(ValueError, nx.bidirectional_dijkstra, G, 8, 10)
|
| 344 |
+
G = nx.MultiDiGraph()
|
| 345 |
+
G.add_edge(2, 2, weight=-1)
|
| 346 |
+
assert nx.negative_edge_cycle(G)
|
| 347 |
+
|
| 348 |
+
def test_negative_edge_cycle_empty(self):
|
| 349 |
+
G = nx.DiGraph()
|
| 350 |
+
assert not nx.negative_edge_cycle(G)
|
| 351 |
+
|
| 352 |
+
def test_negative_edge_cycle_custom_weight_key(self):
|
| 353 |
+
d = nx.DiGraph()
|
| 354 |
+
d.add_edge("a", "b", w=-2)
|
| 355 |
+
d.add_edge("b", "a", w=-1)
|
| 356 |
+
assert nx.negative_edge_cycle(d, weight="w")
|
| 357 |
+
|
| 358 |
+
def test_weight_function(self):
|
| 359 |
+
"""Tests that a callable weight is interpreted as a weight
|
| 360 |
+
function instead of an edge attribute.
|
| 361 |
+
|
| 362 |
+
"""
|
| 363 |
+
# Create a triangle in which the edge from node 0 to node 2 has
|
| 364 |
+
# a large weight and the other two edges have a small weight.
|
| 365 |
+
G = nx.complete_graph(3)
|
| 366 |
+
G.adj[0][2]["weight"] = 10
|
| 367 |
+
G.adj[0][1]["weight"] = 1
|
| 368 |
+
G.adj[1][2]["weight"] = 1
|
| 369 |
+
|
| 370 |
+
# The weight function will take the multiplicative inverse of
|
| 371 |
+
# the weights on the edges. This way, weights that were large
|
| 372 |
+
# before now become small and vice versa.
|
| 373 |
+
|
| 374 |
+
def weight(u, v, d):
|
| 375 |
+
return 1 / d["weight"]
|
| 376 |
+
|
| 377 |
+
# The shortest path from 0 to 2 using the actual weights on the
|
| 378 |
+
# edges should be [0, 1, 2].
|
| 379 |
+
distance, path = nx.single_source_dijkstra(G, 0, 2)
|
| 380 |
+
assert distance == 2
|
| 381 |
+
assert path == [0, 1, 2]
|
| 382 |
+
# However, with the above weight function, the shortest path
|
| 383 |
+
# should be [0, 2], since that has a very small weight.
|
| 384 |
+
distance, path = nx.single_source_dijkstra(G, 0, 2, weight=weight)
|
| 385 |
+
assert distance == 1 / 10
|
| 386 |
+
assert path == [0, 2]
|
| 387 |
+
|
| 388 |
+
def test_all_pairs_dijkstra_path(self):
|
| 389 |
+
cycle = nx.cycle_graph(7)
|
| 390 |
+
p = dict(nx.all_pairs_dijkstra_path(cycle))
|
| 391 |
+
assert p[0][3] == [0, 1, 2, 3]
|
| 392 |
+
|
| 393 |
+
cycle[1][2]["weight"] = 10
|
| 394 |
+
p = dict(nx.all_pairs_dijkstra_path(cycle))
|
| 395 |
+
assert p[0][3] == [0, 6, 5, 4, 3]
|
| 396 |
+
|
| 397 |
+
def test_all_pairs_dijkstra_path_length(self):
|
| 398 |
+
cycle = nx.cycle_graph(7)
|
| 399 |
+
pl = dict(nx.all_pairs_dijkstra_path_length(cycle))
|
| 400 |
+
assert pl[0] == {0: 0, 1: 1, 2: 2, 3: 3, 4: 3, 5: 2, 6: 1}
|
| 401 |
+
|
| 402 |
+
cycle[1][2]["weight"] = 10
|
| 403 |
+
pl = dict(nx.all_pairs_dijkstra_path_length(cycle))
|
| 404 |
+
assert pl[0] == {0: 0, 1: 1, 2: 5, 3: 4, 4: 3, 5: 2, 6: 1}
|
| 405 |
+
|
| 406 |
+
def test_all_pairs_dijkstra(self):
|
| 407 |
+
cycle = nx.cycle_graph(7)
|
| 408 |
+
out = dict(nx.all_pairs_dijkstra(cycle))
|
| 409 |
+
assert out[0][0] == {0: 0, 1: 1, 2: 2, 3: 3, 4: 3, 5: 2, 6: 1}
|
| 410 |
+
assert out[0][1][3] == [0, 1, 2, 3]
|
| 411 |
+
|
| 412 |
+
cycle[1][2]["weight"] = 10
|
| 413 |
+
out = dict(nx.all_pairs_dijkstra(cycle))
|
| 414 |
+
assert out[0][0] == {0: 0, 1: 1, 2: 5, 3: 4, 4: 3, 5: 2, 6: 1}
|
| 415 |
+
assert out[0][1][3] == [0, 6, 5, 4, 3]
|
| 416 |
+
|
| 417 |
+
|
| 418 |
+
class TestDijkstraPathLength:
|
| 419 |
+
"""Unit tests for the :func:`networkx.dijkstra_path_length`
|
| 420 |
+
function.
|
| 421 |
+
|
| 422 |
+
"""
|
| 423 |
+
|
| 424 |
+
def test_weight_function(self):
|
| 425 |
+
"""Tests for computing the length of the shortest path using
|
| 426 |
+
Dijkstra's algorithm with a user-defined weight function.
|
| 427 |
+
|
| 428 |
+
"""
|
| 429 |
+
# Create a triangle in which the edge from node 0 to node 2 has
|
| 430 |
+
# a large weight and the other two edges have a small weight.
|
| 431 |
+
G = nx.complete_graph(3)
|
| 432 |
+
G.adj[0][2]["weight"] = 10
|
| 433 |
+
G.adj[0][1]["weight"] = 1
|
| 434 |
+
G.adj[1][2]["weight"] = 1
|
| 435 |
+
|
| 436 |
+
# The weight function will take the multiplicative inverse of
|
| 437 |
+
# the weights on the edges. This way, weights that were large
|
| 438 |
+
# before now become small and vice versa.
|
| 439 |
+
|
| 440 |
+
def weight(u, v, d):
|
| 441 |
+
return 1 / d["weight"]
|
| 442 |
+
|
| 443 |
+
# The shortest path from 0 to 2 using the actual weights on the
|
| 444 |
+
# edges should be [0, 1, 2]. However, with the above weight
|
| 445 |
+
# function, the shortest path should be [0, 2], since that has a
|
| 446 |
+
# very small weight.
|
| 447 |
+
length = nx.dijkstra_path_length(G, 0, 2, weight=weight)
|
| 448 |
+
assert length == 1 / 10
|
| 449 |
+
|
| 450 |
+
|
| 451 |
+
class TestMultiSourceDijkstra:
|
| 452 |
+
"""Unit tests for the multi-source dialect of Dijkstra's shortest
|
| 453 |
+
path algorithms.
|
| 454 |
+
|
| 455 |
+
"""
|
| 456 |
+
|
| 457 |
+
def test_no_sources(self):
|
| 458 |
+
with pytest.raises(ValueError):
|
| 459 |
+
nx.multi_source_dijkstra(nx.Graph(), {})
|
| 460 |
+
|
| 461 |
+
def test_path_no_sources(self):
|
| 462 |
+
with pytest.raises(ValueError):
|
| 463 |
+
nx.multi_source_dijkstra_path(nx.Graph(), {})
|
| 464 |
+
|
| 465 |
+
def test_path_length_no_sources(self):
|
| 466 |
+
with pytest.raises(ValueError):
|
| 467 |
+
nx.multi_source_dijkstra_path_length(nx.Graph(), {})
|
| 468 |
+
|
| 469 |
+
@pytest.mark.parametrize(
|
| 470 |
+
"fn",
|
| 471 |
+
(
|
| 472 |
+
nx.multi_source_dijkstra_path,
|
| 473 |
+
nx.multi_source_dijkstra_path_length,
|
| 474 |
+
nx.multi_source_dijkstra,
|
| 475 |
+
),
|
| 476 |
+
)
|
| 477 |
+
def test_absent_source(self, fn):
|
| 478 |
+
G = nx.path_graph(2)
|
| 479 |
+
with pytest.raises(nx.NodeNotFound):
|
| 480 |
+
fn(G, [3], 0)
|
| 481 |
+
with pytest.raises(nx.NodeNotFound):
|
| 482 |
+
fn(G, [3], 3)
|
| 483 |
+
|
| 484 |
+
def test_two_sources(self):
|
| 485 |
+
edges = [(0, 1, 1), (1, 2, 1), (2, 3, 10), (3, 4, 1)]
|
| 486 |
+
G = nx.Graph()
|
| 487 |
+
G.add_weighted_edges_from(edges)
|
| 488 |
+
sources = {0, 4}
|
| 489 |
+
distances, paths = nx.multi_source_dijkstra(G, sources)
|
| 490 |
+
expected_distances = {0: 0, 1: 1, 2: 2, 3: 1, 4: 0}
|
| 491 |
+
expected_paths = {0: [0], 1: [0, 1], 2: [0, 1, 2], 3: [4, 3], 4: [4]}
|
| 492 |
+
assert distances == expected_distances
|
| 493 |
+
assert paths == expected_paths
|
| 494 |
+
|
| 495 |
+
def test_simple_paths(self):
|
| 496 |
+
G = nx.path_graph(4)
|
| 497 |
+
lengths = nx.multi_source_dijkstra_path_length(G, [0])
|
| 498 |
+
assert lengths == {n: n for n in G}
|
| 499 |
+
paths = nx.multi_source_dijkstra_path(G, [0])
|
| 500 |
+
assert paths == {n: list(range(n + 1)) for n in G}
|
| 501 |
+
|
| 502 |
+
|
| 503 |
+
class TestBellmanFordAndGoldbergRadzik(WeightedTestBase):
|
| 504 |
+
def test_single_node_graph(self):
|
| 505 |
+
G = nx.DiGraph()
|
| 506 |
+
G.add_node(0)
|
| 507 |
+
assert nx.single_source_bellman_ford_path(G, 0) == {0: [0]}
|
| 508 |
+
assert nx.single_source_bellman_ford_path_length(G, 0) == {0: 0}
|
| 509 |
+
assert nx.single_source_bellman_ford(G, 0) == ({0: 0}, {0: [0]})
|
| 510 |
+
assert nx.bellman_ford_predecessor_and_distance(G, 0) == ({0: []}, {0: 0})
|
| 511 |
+
assert nx.goldberg_radzik(G, 0) == ({0: None}, {0: 0})
|
| 512 |
+
|
| 513 |
+
def test_absent_source_bellman_ford(self):
|
| 514 |
+
# the check is in _bellman_ford; this provides regression testing
|
| 515 |
+
# against later changes to "client" Bellman-Ford functions
|
| 516 |
+
G = nx.path_graph(2)
|
| 517 |
+
for fn in (
|
| 518 |
+
nx.bellman_ford_predecessor_and_distance,
|
| 519 |
+
nx.bellman_ford_path,
|
| 520 |
+
nx.bellman_ford_path_length,
|
| 521 |
+
nx.single_source_bellman_ford_path,
|
| 522 |
+
nx.single_source_bellman_ford_path_length,
|
| 523 |
+
nx.single_source_bellman_ford,
|
| 524 |
+
):
|
| 525 |
+
pytest.raises(nx.NodeNotFound, fn, G, 3, 0)
|
| 526 |
+
pytest.raises(nx.NodeNotFound, fn, G, 3, 3)
|
| 527 |
+
|
| 528 |
+
def test_absent_source_goldberg_radzik(self):
|
| 529 |
+
with pytest.raises(nx.NodeNotFound):
|
| 530 |
+
G = nx.path_graph(2)
|
| 531 |
+
nx.goldberg_radzik(G, 3, 0)
|
| 532 |
+
|
| 533 |
+
def test_negative_cycle_heuristic(self):
|
| 534 |
+
G = nx.DiGraph()
|
| 535 |
+
G.add_edge(0, 1, weight=-1)
|
| 536 |
+
G.add_edge(1, 2, weight=-1)
|
| 537 |
+
G.add_edge(2, 3, weight=-1)
|
| 538 |
+
G.add_edge(3, 0, weight=3)
|
| 539 |
+
assert not nx.negative_edge_cycle(G, heuristic=True)
|
| 540 |
+
G.add_edge(2, 0, weight=1.999)
|
| 541 |
+
assert nx.negative_edge_cycle(G, heuristic=True)
|
| 542 |
+
G.edges[2, 0]["weight"] = 2
|
| 543 |
+
assert not nx.negative_edge_cycle(G, heuristic=True)
|
| 544 |
+
|
| 545 |
+
def test_negative_cycle_consistency(self):
|
| 546 |
+
import random
|
| 547 |
+
|
| 548 |
+
unif = random.uniform
|
| 549 |
+
for random_seed in range(2): # range(20):
|
| 550 |
+
random.seed(random_seed)
|
| 551 |
+
for density in [0.1, 0.9]: # .3, .7, .9]:
|
| 552 |
+
for N in [1, 10, 20]: # range(1, 60 - int(30 * density)):
|
| 553 |
+
for max_cost in [1, 90]: # [1, 10, 40, 90]:
|
| 554 |
+
G = nx.binomial_graph(N, density, seed=4, directed=True)
|
| 555 |
+
edges = ((u, v, unif(-1, max_cost)) for u, v in G.edges)
|
| 556 |
+
G.add_weighted_edges_from(edges)
|
| 557 |
+
|
| 558 |
+
no_heuristic = nx.negative_edge_cycle(G, heuristic=False)
|
| 559 |
+
with_heuristic = nx.negative_edge_cycle(G, heuristic=True)
|
| 560 |
+
assert no_heuristic == with_heuristic
|
| 561 |
+
|
| 562 |
+
def test_negative_cycle(self):
|
| 563 |
+
G = nx.cycle_graph(5, create_using=nx.DiGraph())
|
| 564 |
+
G.add_edge(1, 2, weight=-7)
|
| 565 |
+
for i in range(5):
|
| 566 |
+
pytest.raises(
|
| 567 |
+
nx.NetworkXUnbounded, nx.single_source_bellman_ford_path, G, i
|
| 568 |
+
)
|
| 569 |
+
pytest.raises(
|
| 570 |
+
nx.NetworkXUnbounded, nx.single_source_bellman_ford_path_length, G, i
|
| 571 |
+
)
|
| 572 |
+
pytest.raises(nx.NetworkXUnbounded, nx.single_source_bellman_ford, G, i)
|
| 573 |
+
pytest.raises(
|
| 574 |
+
nx.NetworkXUnbounded, nx.bellman_ford_predecessor_and_distance, G, i
|
| 575 |
+
)
|
| 576 |
+
pytest.raises(nx.NetworkXUnbounded, nx.goldberg_radzik, G, i)
|
| 577 |
+
G = nx.cycle_graph(5) # undirected Graph
|
| 578 |
+
G.add_edge(1, 2, weight=-3)
|
| 579 |
+
for i in range(5):
|
| 580 |
+
pytest.raises(
|
| 581 |
+
nx.NetworkXUnbounded, nx.single_source_bellman_ford_path, G, i
|
| 582 |
+
)
|
| 583 |
+
pytest.raises(
|
| 584 |
+
nx.NetworkXUnbounded, nx.single_source_bellman_ford_path_length, G, i
|
| 585 |
+
)
|
| 586 |
+
pytest.raises(nx.NetworkXUnbounded, nx.single_source_bellman_ford, G, i)
|
| 587 |
+
pytest.raises(
|
| 588 |
+
nx.NetworkXUnbounded, nx.bellman_ford_predecessor_and_distance, G, i
|
| 589 |
+
)
|
| 590 |
+
pytest.raises(nx.NetworkXUnbounded, nx.goldberg_radzik, G, i)
|
| 591 |
+
G = nx.DiGraph([(1, 1, {"weight": -1})])
|
| 592 |
+
pytest.raises(nx.NetworkXUnbounded, nx.single_source_bellman_ford_path, G, 1)
|
| 593 |
+
pytest.raises(
|
| 594 |
+
nx.NetworkXUnbounded, nx.single_source_bellman_ford_path_length, G, 1
|
| 595 |
+
)
|
| 596 |
+
pytest.raises(nx.NetworkXUnbounded, nx.single_source_bellman_ford, G, 1)
|
| 597 |
+
pytest.raises(
|
| 598 |
+
nx.NetworkXUnbounded, nx.bellman_ford_predecessor_and_distance, G, 1
|
| 599 |
+
)
|
| 600 |
+
pytest.raises(nx.NetworkXUnbounded, nx.goldberg_radzik, G, 1)
|
| 601 |
+
G = nx.MultiDiGraph([(1, 1, {"weight": -1})])
|
| 602 |
+
pytest.raises(nx.NetworkXUnbounded, nx.single_source_bellman_ford_path, G, 1)
|
| 603 |
+
pytest.raises(
|
| 604 |
+
nx.NetworkXUnbounded, nx.single_source_bellman_ford_path_length, G, 1
|
| 605 |
+
)
|
| 606 |
+
pytest.raises(nx.NetworkXUnbounded, nx.single_source_bellman_ford, G, 1)
|
| 607 |
+
pytest.raises(
|
| 608 |
+
nx.NetworkXUnbounded, nx.bellman_ford_predecessor_and_distance, G, 1
|
| 609 |
+
)
|
| 610 |
+
pytest.raises(nx.NetworkXUnbounded, nx.goldberg_radzik, G, 1)
|
| 611 |
+
|
| 612 |
+
def test_zero_cycle(self):
|
| 613 |
+
G = nx.cycle_graph(5, create_using=nx.DiGraph())
|
| 614 |
+
G.add_edge(2, 3, weight=-4)
|
| 615 |
+
# check that zero cycle doesn't raise
|
| 616 |
+
nx.goldberg_radzik(G, 1)
|
| 617 |
+
nx.bellman_ford_predecessor_and_distance(G, 1)
|
| 618 |
+
|
| 619 |
+
G.add_edge(2, 3, weight=-4.0001)
|
| 620 |
+
# check that negative cycle does raise
|
| 621 |
+
pytest.raises(
|
| 622 |
+
nx.NetworkXUnbounded, nx.bellman_ford_predecessor_and_distance, G, 1
|
| 623 |
+
)
|
| 624 |
+
pytest.raises(nx.NetworkXUnbounded, nx.goldberg_radzik, G, 1)
|
| 625 |
+
|
| 626 |
+
def test_find_negative_cycle_longer_cycle(self):
|
| 627 |
+
G = nx.cycle_graph(5, create_using=nx.DiGraph())
|
| 628 |
+
nx.add_cycle(G, [3, 5, 6, 7, 8, 9])
|
| 629 |
+
G.add_edge(1, 2, weight=-30)
|
| 630 |
+
assert nx.find_negative_cycle(G, 1) == [0, 1, 2, 3, 4, 0]
|
| 631 |
+
assert nx.find_negative_cycle(G, 7) == [2, 3, 4, 0, 1, 2]
|
| 632 |
+
|
| 633 |
+
def test_find_negative_cycle_no_cycle(self):
|
| 634 |
+
G = nx.path_graph(5, create_using=nx.DiGraph())
|
| 635 |
+
pytest.raises(nx.NetworkXError, nx.find_negative_cycle, G, 3)
|
| 636 |
+
|
| 637 |
+
def test_find_negative_cycle_single_edge(self):
|
| 638 |
+
G = nx.Graph()
|
| 639 |
+
G.add_edge(0, 1, weight=-1)
|
| 640 |
+
assert nx.find_negative_cycle(G, 1) == [1, 0, 1]
|
| 641 |
+
|
| 642 |
+
def test_negative_weight(self):
|
| 643 |
+
G = nx.cycle_graph(5, create_using=nx.DiGraph())
|
| 644 |
+
G.add_edge(1, 2, weight=-3)
|
| 645 |
+
assert nx.single_source_bellman_ford_path(G, 0) == {
|
| 646 |
+
0: [0],
|
| 647 |
+
1: [0, 1],
|
| 648 |
+
2: [0, 1, 2],
|
| 649 |
+
3: [0, 1, 2, 3],
|
| 650 |
+
4: [0, 1, 2, 3, 4],
|
| 651 |
+
}
|
| 652 |
+
assert nx.single_source_bellman_ford_path_length(G, 0) == {
|
| 653 |
+
0: 0,
|
| 654 |
+
1: 1,
|
| 655 |
+
2: -2,
|
| 656 |
+
3: -1,
|
| 657 |
+
4: 0,
|
| 658 |
+
}
|
| 659 |
+
assert nx.single_source_bellman_ford(G, 0) == (
|
| 660 |
+
{0: 0, 1: 1, 2: -2, 3: -1, 4: 0},
|
| 661 |
+
{0: [0], 1: [0, 1], 2: [0, 1, 2], 3: [0, 1, 2, 3], 4: [0, 1, 2, 3, 4]},
|
| 662 |
+
)
|
| 663 |
+
assert nx.bellman_ford_predecessor_and_distance(G, 0) == (
|
| 664 |
+
{0: [], 1: [0], 2: [1], 3: [2], 4: [3]},
|
| 665 |
+
{0: 0, 1: 1, 2: -2, 3: -1, 4: 0},
|
| 666 |
+
)
|
| 667 |
+
assert nx.goldberg_radzik(G, 0) == (
|
| 668 |
+
{0: None, 1: 0, 2: 1, 3: 2, 4: 3},
|
| 669 |
+
{0: 0, 1: 1, 2: -2, 3: -1, 4: 0},
|
| 670 |
+
)
|
| 671 |
+
|
| 672 |
+
def test_not_connected(self):
|
| 673 |
+
G = nx.complete_graph(6)
|
| 674 |
+
G.add_edge(10, 11)
|
| 675 |
+
G.add_edge(10, 12)
|
| 676 |
+
assert nx.single_source_bellman_ford_path(G, 0) == {
|
| 677 |
+
0: [0],
|
| 678 |
+
1: [0, 1],
|
| 679 |
+
2: [0, 2],
|
| 680 |
+
3: [0, 3],
|
| 681 |
+
4: [0, 4],
|
| 682 |
+
5: [0, 5],
|
| 683 |
+
}
|
| 684 |
+
assert nx.single_source_bellman_ford_path_length(G, 0) == {
|
| 685 |
+
0: 0,
|
| 686 |
+
1: 1,
|
| 687 |
+
2: 1,
|
| 688 |
+
3: 1,
|
| 689 |
+
4: 1,
|
| 690 |
+
5: 1,
|
| 691 |
+
}
|
| 692 |
+
assert nx.single_source_bellman_ford(G, 0) == (
|
| 693 |
+
{0: 0, 1: 1, 2: 1, 3: 1, 4: 1, 5: 1},
|
| 694 |
+
{0: [0], 1: [0, 1], 2: [0, 2], 3: [0, 3], 4: [0, 4], 5: [0, 5]},
|
| 695 |
+
)
|
| 696 |
+
assert nx.bellman_ford_predecessor_and_distance(G, 0) == (
|
| 697 |
+
{0: [], 1: [0], 2: [0], 3: [0], 4: [0], 5: [0]},
|
| 698 |
+
{0: 0, 1: 1, 2: 1, 3: 1, 4: 1, 5: 1},
|
| 699 |
+
)
|
| 700 |
+
assert nx.goldberg_radzik(G, 0) == (
|
| 701 |
+
{0: None, 1: 0, 2: 0, 3: 0, 4: 0, 5: 0},
|
| 702 |
+
{0: 0, 1: 1, 2: 1, 3: 1, 4: 1, 5: 1},
|
| 703 |
+
)
|
| 704 |
+
|
| 705 |
+
# not connected, with a component not containing the source that
|
| 706 |
+
# contains a negative cycle.
|
| 707 |
+
G = nx.complete_graph(6)
|
| 708 |
+
G.add_edges_from(
|
| 709 |
+
[
|
| 710 |
+
("A", "B", {"load": 3}),
|
| 711 |
+
("B", "C", {"load": -10}),
|
| 712 |
+
("C", "A", {"load": 2}),
|
| 713 |
+
]
|
| 714 |
+
)
|
| 715 |
+
assert nx.single_source_bellman_ford_path(G, 0, weight="load") == {
|
| 716 |
+
0: [0],
|
| 717 |
+
1: [0, 1],
|
| 718 |
+
2: [0, 2],
|
| 719 |
+
3: [0, 3],
|
| 720 |
+
4: [0, 4],
|
| 721 |
+
5: [0, 5],
|
| 722 |
+
}
|
| 723 |
+
assert nx.single_source_bellman_ford_path_length(G, 0, weight="load") == {
|
| 724 |
+
0: 0,
|
| 725 |
+
1: 1,
|
| 726 |
+
2: 1,
|
| 727 |
+
3: 1,
|
| 728 |
+
4: 1,
|
| 729 |
+
5: 1,
|
| 730 |
+
}
|
| 731 |
+
assert nx.single_source_bellman_ford(G, 0, weight="load") == (
|
| 732 |
+
{0: 0, 1: 1, 2: 1, 3: 1, 4: 1, 5: 1},
|
| 733 |
+
{0: [0], 1: [0, 1], 2: [0, 2], 3: [0, 3], 4: [0, 4], 5: [0, 5]},
|
| 734 |
+
)
|
| 735 |
+
assert nx.bellman_ford_predecessor_and_distance(G, 0, weight="load") == (
|
| 736 |
+
{0: [], 1: [0], 2: [0], 3: [0], 4: [0], 5: [0]},
|
| 737 |
+
{0: 0, 1: 1, 2: 1, 3: 1, 4: 1, 5: 1},
|
| 738 |
+
)
|
| 739 |
+
assert nx.goldberg_radzik(G, 0, weight="load") == (
|
| 740 |
+
{0: None, 1: 0, 2: 0, 3: 0, 4: 0, 5: 0},
|
| 741 |
+
{0: 0, 1: 1, 2: 1, 3: 1, 4: 1, 5: 1},
|
| 742 |
+
)
|
| 743 |
+
|
| 744 |
+
def test_multigraph(self):
|
| 745 |
+
assert nx.bellman_ford_path(self.MXG, "s", "v") == ["s", "x", "u", "v"]
|
| 746 |
+
assert nx.bellman_ford_path_length(self.MXG, "s", "v") == 9
|
| 747 |
+
assert nx.single_source_bellman_ford_path(self.MXG, "s")["v"] == [
|
| 748 |
+
"s",
|
| 749 |
+
"x",
|
| 750 |
+
"u",
|
| 751 |
+
"v",
|
| 752 |
+
]
|
| 753 |
+
assert nx.single_source_bellman_ford_path_length(self.MXG, "s")["v"] == 9
|
| 754 |
+
D, P = nx.single_source_bellman_ford(self.MXG, "s", target="v")
|
| 755 |
+
assert D == 9
|
| 756 |
+
assert P == ["s", "x", "u", "v"]
|
| 757 |
+
P, D = nx.bellman_ford_predecessor_and_distance(self.MXG, "s")
|
| 758 |
+
assert P["v"] == ["u"]
|
| 759 |
+
assert D["v"] == 9
|
| 760 |
+
P, D = nx.goldberg_radzik(self.MXG, "s")
|
| 761 |
+
assert P["v"] == "u"
|
| 762 |
+
assert D["v"] == 9
|
| 763 |
+
assert nx.bellman_ford_path(self.MXG4, 0, 2) == [0, 1, 2]
|
| 764 |
+
assert nx.bellman_ford_path_length(self.MXG4, 0, 2) == 4
|
| 765 |
+
assert nx.single_source_bellman_ford_path(self.MXG4, 0)[2] == [0, 1, 2]
|
| 766 |
+
assert nx.single_source_bellman_ford_path_length(self.MXG4, 0)[2] == 4
|
| 767 |
+
D, P = nx.single_source_bellman_ford(self.MXG4, 0, target=2)
|
| 768 |
+
assert D == 4
|
| 769 |
+
assert P == [0, 1, 2]
|
| 770 |
+
P, D = nx.bellman_ford_predecessor_and_distance(self.MXG4, 0)
|
| 771 |
+
assert P[2] == [1]
|
| 772 |
+
assert D[2] == 4
|
| 773 |
+
P, D = nx.goldberg_radzik(self.MXG4, 0)
|
| 774 |
+
assert P[2] == 1
|
| 775 |
+
assert D[2] == 4
|
| 776 |
+
|
| 777 |
+
def test_others(self):
|
| 778 |
+
assert nx.bellman_ford_path(self.XG, "s", "v") == ["s", "x", "u", "v"]
|
| 779 |
+
assert nx.bellman_ford_path_length(self.XG, "s", "v") == 9
|
| 780 |
+
assert nx.single_source_bellman_ford_path(self.XG, "s")["v"] == [
|
| 781 |
+
"s",
|
| 782 |
+
"x",
|
| 783 |
+
"u",
|
| 784 |
+
"v",
|
| 785 |
+
]
|
| 786 |
+
assert nx.single_source_bellman_ford_path_length(self.XG, "s")["v"] == 9
|
| 787 |
+
D, P = nx.single_source_bellman_ford(self.XG, "s", target="v")
|
| 788 |
+
assert D == 9
|
| 789 |
+
assert P == ["s", "x", "u", "v"]
|
| 790 |
+
(P, D) = nx.bellman_ford_predecessor_and_distance(self.XG, "s")
|
| 791 |
+
assert P["v"] == ["u"]
|
| 792 |
+
assert D["v"] == 9
|
| 793 |
+
(P, D) = nx.goldberg_radzik(self.XG, "s")
|
| 794 |
+
assert P["v"] == "u"
|
| 795 |
+
assert D["v"] == 9
|
| 796 |
+
|
| 797 |
+
def test_path_graph(self):
|
| 798 |
+
G = nx.path_graph(4)
|
| 799 |
+
assert nx.single_source_bellman_ford_path(G, 0) == {
|
| 800 |
+
0: [0],
|
| 801 |
+
1: [0, 1],
|
| 802 |
+
2: [0, 1, 2],
|
| 803 |
+
3: [0, 1, 2, 3],
|
| 804 |
+
}
|
| 805 |
+
assert nx.single_source_bellman_ford_path_length(G, 0) == {
|
| 806 |
+
0: 0,
|
| 807 |
+
1: 1,
|
| 808 |
+
2: 2,
|
| 809 |
+
3: 3,
|
| 810 |
+
}
|
| 811 |
+
assert nx.single_source_bellman_ford(G, 0) == (
|
| 812 |
+
{0: 0, 1: 1, 2: 2, 3: 3},
|
| 813 |
+
{0: [0], 1: [0, 1], 2: [0, 1, 2], 3: [0, 1, 2, 3]},
|
| 814 |
+
)
|
| 815 |
+
assert nx.bellman_ford_predecessor_and_distance(G, 0) == (
|
| 816 |
+
{0: [], 1: [0], 2: [1], 3: [2]},
|
| 817 |
+
{0: 0, 1: 1, 2: 2, 3: 3},
|
| 818 |
+
)
|
| 819 |
+
assert nx.goldberg_radzik(G, 0) == (
|
| 820 |
+
{0: None, 1: 0, 2: 1, 3: 2},
|
| 821 |
+
{0: 0, 1: 1, 2: 2, 3: 3},
|
| 822 |
+
)
|
| 823 |
+
assert nx.single_source_bellman_ford_path(G, 3) == {
|
| 824 |
+
0: [3, 2, 1, 0],
|
| 825 |
+
1: [3, 2, 1],
|
| 826 |
+
2: [3, 2],
|
| 827 |
+
3: [3],
|
| 828 |
+
}
|
| 829 |
+
assert nx.single_source_bellman_ford_path_length(G, 3) == {
|
| 830 |
+
0: 3,
|
| 831 |
+
1: 2,
|
| 832 |
+
2: 1,
|
| 833 |
+
3: 0,
|
| 834 |
+
}
|
| 835 |
+
assert nx.single_source_bellman_ford(G, 3) == (
|
| 836 |
+
{0: 3, 1: 2, 2: 1, 3: 0},
|
| 837 |
+
{0: [3, 2, 1, 0], 1: [3, 2, 1], 2: [3, 2], 3: [3]},
|
| 838 |
+
)
|
| 839 |
+
assert nx.bellman_ford_predecessor_and_distance(G, 3) == (
|
| 840 |
+
{0: [1], 1: [2], 2: [3], 3: []},
|
| 841 |
+
{0: 3, 1: 2, 2: 1, 3: 0},
|
| 842 |
+
)
|
| 843 |
+
assert nx.goldberg_radzik(G, 3) == (
|
| 844 |
+
{0: 1, 1: 2, 2: 3, 3: None},
|
| 845 |
+
{0: 3, 1: 2, 2: 1, 3: 0},
|
| 846 |
+
)
|
| 847 |
+
|
| 848 |
+
def test_4_cycle(self):
|
| 849 |
+
# 4-cycle
|
| 850 |
+
G = nx.Graph([(0, 1), (1, 2), (2, 3), (3, 0)])
|
| 851 |
+
dist, path = nx.single_source_bellman_ford(G, 0)
|
| 852 |
+
assert dist == {0: 0, 1: 1, 2: 2, 3: 1}
|
| 853 |
+
assert path[0] == [0]
|
| 854 |
+
assert path[1] == [0, 1]
|
| 855 |
+
assert path[2] in [[0, 1, 2], [0, 3, 2]]
|
| 856 |
+
assert path[3] == [0, 3]
|
| 857 |
+
|
| 858 |
+
pred, dist = nx.bellman_ford_predecessor_and_distance(G, 0)
|
| 859 |
+
assert pred[0] == []
|
| 860 |
+
assert pred[1] == [0]
|
| 861 |
+
assert pred[2] in [[1, 3], [3, 1]]
|
| 862 |
+
assert pred[3] == [0]
|
| 863 |
+
assert dist == {0: 0, 1: 1, 2: 2, 3: 1}
|
| 864 |
+
|
| 865 |
+
pred, dist = nx.goldberg_radzik(G, 0)
|
| 866 |
+
assert pred[0] is None
|
| 867 |
+
assert pred[1] == 0
|
| 868 |
+
assert pred[2] in [1, 3]
|
| 869 |
+
assert pred[3] == 0
|
| 870 |
+
assert dist == {0: 0, 1: 1, 2: 2, 3: 1}
|
| 871 |
+
|
| 872 |
+
def test_negative_weight_bf_path(self):
|
| 873 |
+
G = nx.DiGraph()
|
| 874 |
+
G.add_nodes_from("abcd")
|
| 875 |
+
G.add_edge("a", "d", weight=0)
|
| 876 |
+
G.add_edge("a", "b", weight=1)
|
| 877 |
+
G.add_edge("b", "c", weight=-3)
|
| 878 |
+
G.add_edge("c", "d", weight=1)
|
| 879 |
+
|
| 880 |
+
assert nx.bellman_ford_path(G, "a", "d") == ["a", "b", "c", "d"]
|
| 881 |
+
assert nx.bellman_ford_path_length(G, "a", "d") == -1
|
| 882 |
+
|
| 883 |
+
def test_zero_cycle_smoke(self):
|
| 884 |
+
D = nx.DiGraph()
|
| 885 |
+
D.add_weighted_edges_from([(0, 1, 1), (1, 2, 1), (2, 3, 1), (3, 1, -2)])
|
| 886 |
+
|
| 887 |
+
nx.bellman_ford_path(D, 1, 3)
|
| 888 |
+
nx.dijkstra_path(D, 1, 3)
|
| 889 |
+
nx.bidirectional_dijkstra(D, 1, 3)
|
| 890 |
+
# FIXME nx.goldberg_radzik(D, 1)
|
| 891 |
+
|
| 892 |
+
|
| 893 |
+
class TestJohnsonAlgorithm(WeightedTestBase):
|
| 894 |
+
def test_single_node_graph(self):
|
| 895 |
+
G = nx.DiGraph()
|
| 896 |
+
G.add_node(0)
|
| 897 |
+
assert nx.johnson(G) == {0: {0: [0]}}
|
| 898 |
+
|
| 899 |
+
def test_negative_cycle(self):
|
| 900 |
+
G = nx.DiGraph()
|
| 901 |
+
G.add_weighted_edges_from(
|
| 902 |
+
[
|
| 903 |
+
("0", "3", 3),
|
| 904 |
+
("0", "1", -5),
|
| 905 |
+
("1", "0", -5),
|
| 906 |
+
("0", "2", 2),
|
| 907 |
+
("1", "2", 4),
|
| 908 |
+
("2", "3", 1),
|
| 909 |
+
]
|
| 910 |
+
)
|
| 911 |
+
pytest.raises(nx.NetworkXUnbounded, nx.johnson, G)
|
| 912 |
+
G = nx.Graph()
|
| 913 |
+
G.add_weighted_edges_from(
|
| 914 |
+
[
|
| 915 |
+
("0", "3", 3),
|
| 916 |
+
("0", "1", -5),
|
| 917 |
+
("1", "0", -5),
|
| 918 |
+
("0", "2", 2),
|
| 919 |
+
("1", "2", 4),
|
| 920 |
+
("2", "3", 1),
|
| 921 |
+
]
|
| 922 |
+
)
|
| 923 |
+
pytest.raises(nx.NetworkXUnbounded, nx.johnson, G)
|
| 924 |
+
|
| 925 |
+
def test_negative_weights(self):
|
| 926 |
+
G = nx.DiGraph()
|
| 927 |
+
G.add_weighted_edges_from(
|
| 928 |
+
[("0", "3", 3), ("0", "1", -5), ("0", "2", 2), ("1", "2", 4), ("2", "3", 1)]
|
| 929 |
+
)
|
| 930 |
+
paths = nx.johnson(G)
|
| 931 |
+
assert paths == {
|
| 932 |
+
"1": {"1": ["1"], "3": ["1", "2", "3"], "2": ["1", "2"]},
|
| 933 |
+
"0": {
|
| 934 |
+
"1": ["0", "1"],
|
| 935 |
+
"0": ["0"],
|
| 936 |
+
"3": ["0", "1", "2", "3"],
|
| 937 |
+
"2": ["0", "1", "2"],
|
| 938 |
+
},
|
| 939 |
+
"3": {"3": ["3"]},
|
| 940 |
+
"2": {"3": ["2", "3"], "2": ["2"]},
|
| 941 |
+
}
|
| 942 |
+
|
| 943 |
+
def test_unweighted_graph(self):
|
| 944 |
+
G = nx.Graph()
|
| 945 |
+
G.add_edges_from([(1, 0), (2, 1)])
|
| 946 |
+
H = G.copy()
|
| 947 |
+
nx.set_edge_attributes(H, values=1, name="weight")
|
| 948 |
+
assert nx.johnson(G) == nx.johnson(H)
|
| 949 |
+
|
| 950 |
+
def test_partially_weighted_graph_with_negative_edges(self):
|
| 951 |
+
G = nx.DiGraph()
|
| 952 |
+
G.add_edges_from([(0, 1), (1, 2), (2, 0), (1, 0)])
|
| 953 |
+
G[1][0]["weight"] = -2
|
| 954 |
+
G[0][1]["weight"] = 3
|
| 955 |
+
G[1][2]["weight"] = -4
|
| 956 |
+
|
| 957 |
+
H = G.copy()
|
| 958 |
+
H[2][0]["weight"] = 1
|
| 959 |
+
|
| 960 |
+
I = G.copy()
|
| 961 |
+
I[2][0]["weight"] = 8
|
| 962 |
+
|
| 963 |
+
assert nx.johnson(G) == nx.johnson(H)
|
| 964 |
+
assert nx.johnson(G) != nx.johnson(I)
|
| 965 |
+
|
| 966 |
+
def test_graphs(self):
|
| 967 |
+
validate_path(self.XG, "s", "v", 9, nx.johnson(self.XG)["s"]["v"])
|
| 968 |
+
validate_path(self.MXG, "s", "v", 9, nx.johnson(self.MXG)["s"]["v"])
|
| 969 |
+
validate_path(self.XG2, 1, 3, 4, nx.johnson(self.XG2)[1][3])
|
| 970 |
+
validate_path(self.XG3, 0, 3, 15, nx.johnson(self.XG3)[0][3])
|
| 971 |
+
validate_path(self.XG4, 0, 2, 4, nx.johnson(self.XG4)[0][2])
|
| 972 |
+
validate_path(self.MXG4, 0, 2, 4, nx.johnson(self.MXG4)[0][2])
|
code/LaDi-RL-old-qwen-cod/LaDi-RL-old-qwen-cod/venv/lib64/python3.10/site-packages/networkx/algorithms/shortest_paths/unweighted.py
ADDED
|
@@ -0,0 +1,579 @@
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|
| 1 |
+
"""
|
| 2 |
+
Shortest path algorithms for unweighted graphs.
|
| 3 |
+
"""
|
| 4 |
+
|
| 5 |
+
import warnings
|
| 6 |
+
|
| 7 |
+
import networkx as nx
|
| 8 |
+
|
| 9 |
+
__all__ = [
|
| 10 |
+
"bidirectional_shortest_path",
|
| 11 |
+
"single_source_shortest_path",
|
| 12 |
+
"single_source_shortest_path_length",
|
| 13 |
+
"single_target_shortest_path",
|
| 14 |
+
"single_target_shortest_path_length",
|
| 15 |
+
"all_pairs_shortest_path",
|
| 16 |
+
"all_pairs_shortest_path_length",
|
| 17 |
+
"predecessor",
|
| 18 |
+
]
|
| 19 |
+
|
| 20 |
+
|
| 21 |
+
@nx._dispatchable
|
| 22 |
+
def single_source_shortest_path_length(G, source, cutoff=None):
|
| 23 |
+
"""Compute the shortest path lengths from source to all reachable nodes.
|
| 24 |
+
|
| 25 |
+
Parameters
|
| 26 |
+
----------
|
| 27 |
+
G : NetworkX graph
|
| 28 |
+
|
| 29 |
+
source : node
|
| 30 |
+
Starting node for path
|
| 31 |
+
|
| 32 |
+
cutoff : integer, optional
|
| 33 |
+
Depth to stop the search. Only paths of length <= cutoff are returned.
|
| 34 |
+
|
| 35 |
+
Returns
|
| 36 |
+
-------
|
| 37 |
+
lengths : dict
|
| 38 |
+
Dict keyed by node to shortest path length to source.
|
| 39 |
+
|
| 40 |
+
Examples
|
| 41 |
+
--------
|
| 42 |
+
>>> G = nx.path_graph(5)
|
| 43 |
+
>>> length = nx.single_source_shortest_path_length(G, 0)
|
| 44 |
+
>>> length[4]
|
| 45 |
+
4
|
| 46 |
+
>>> for node in length:
|
| 47 |
+
... print(f"{node}: {length[node]}")
|
| 48 |
+
0: 0
|
| 49 |
+
1: 1
|
| 50 |
+
2: 2
|
| 51 |
+
3: 3
|
| 52 |
+
4: 4
|
| 53 |
+
|
| 54 |
+
See Also
|
| 55 |
+
--------
|
| 56 |
+
shortest_path_length
|
| 57 |
+
"""
|
| 58 |
+
if source not in G:
|
| 59 |
+
raise nx.NodeNotFound(f"Source {source} is not in G")
|
| 60 |
+
if cutoff is None:
|
| 61 |
+
cutoff = float("inf")
|
| 62 |
+
nextlevel = [source]
|
| 63 |
+
return dict(_single_shortest_path_length(G._adj, nextlevel, cutoff))
|
| 64 |
+
|
| 65 |
+
|
| 66 |
+
def _single_shortest_path_length(adj, firstlevel, cutoff):
|
| 67 |
+
"""Yields (node, level) in a breadth first search
|
| 68 |
+
|
| 69 |
+
Shortest Path Length helper function
|
| 70 |
+
Parameters
|
| 71 |
+
----------
|
| 72 |
+
adj : dict
|
| 73 |
+
Adjacency dict or view
|
| 74 |
+
firstlevel : list
|
| 75 |
+
starting nodes, e.g. [source] or [target]
|
| 76 |
+
cutoff : int or float
|
| 77 |
+
level at which we stop the process
|
| 78 |
+
"""
|
| 79 |
+
seen = set(firstlevel)
|
| 80 |
+
nextlevel = firstlevel
|
| 81 |
+
level = 0
|
| 82 |
+
n = len(adj)
|
| 83 |
+
for v in nextlevel:
|
| 84 |
+
yield (v, level)
|
| 85 |
+
while nextlevel and cutoff > level:
|
| 86 |
+
level += 1
|
| 87 |
+
thislevel = nextlevel
|
| 88 |
+
nextlevel = []
|
| 89 |
+
for v in thislevel:
|
| 90 |
+
for w in adj[v]:
|
| 91 |
+
if w not in seen:
|
| 92 |
+
seen.add(w)
|
| 93 |
+
nextlevel.append(w)
|
| 94 |
+
yield (w, level)
|
| 95 |
+
if len(seen) == n:
|
| 96 |
+
return
|
| 97 |
+
|
| 98 |
+
|
| 99 |
+
@nx._dispatchable
|
| 100 |
+
def single_target_shortest_path_length(G, target, cutoff=None):
|
| 101 |
+
"""Compute the shortest path lengths to target from all reachable nodes.
|
| 102 |
+
|
| 103 |
+
Parameters
|
| 104 |
+
----------
|
| 105 |
+
G : NetworkX graph
|
| 106 |
+
|
| 107 |
+
target : node
|
| 108 |
+
Target node for path
|
| 109 |
+
|
| 110 |
+
cutoff : integer, optional
|
| 111 |
+
Depth to stop the search. Only paths of length <= cutoff are returned.
|
| 112 |
+
|
| 113 |
+
Returns
|
| 114 |
+
-------
|
| 115 |
+
lengths : iterator
|
| 116 |
+
(source, shortest path length) iterator
|
| 117 |
+
|
| 118 |
+
Examples
|
| 119 |
+
--------
|
| 120 |
+
>>> G = nx.path_graph(5, create_using=nx.DiGraph())
|
| 121 |
+
>>> length = dict(nx.single_target_shortest_path_length(G, 4))
|
| 122 |
+
>>> length[0]
|
| 123 |
+
4
|
| 124 |
+
>>> for node in range(5):
|
| 125 |
+
... print(f"{node}: {length[node]}")
|
| 126 |
+
0: 4
|
| 127 |
+
1: 3
|
| 128 |
+
2: 2
|
| 129 |
+
3: 1
|
| 130 |
+
4: 0
|
| 131 |
+
|
| 132 |
+
See Also
|
| 133 |
+
--------
|
| 134 |
+
single_source_shortest_path_length, shortest_path_length
|
| 135 |
+
"""
|
| 136 |
+
if target not in G:
|
| 137 |
+
raise nx.NodeNotFound(f"Target {target} is not in G")
|
| 138 |
+
|
| 139 |
+
warnings.warn(
|
| 140 |
+
(
|
| 141 |
+
"\n\nsingle_target_shortest_path_length will return a dict instead of"
|
| 142 |
+
"\nan iterator in version 3.5"
|
| 143 |
+
),
|
| 144 |
+
FutureWarning,
|
| 145 |
+
stacklevel=3,
|
| 146 |
+
)
|
| 147 |
+
|
| 148 |
+
if cutoff is None:
|
| 149 |
+
cutoff = float("inf")
|
| 150 |
+
# handle either directed or undirected
|
| 151 |
+
adj = G._pred if G.is_directed() else G._adj
|
| 152 |
+
nextlevel = [target]
|
| 153 |
+
# for version 3.3 we will return a dict like this:
|
| 154 |
+
# return dict(_single_shortest_path_length(adj, nextlevel, cutoff))
|
| 155 |
+
return _single_shortest_path_length(adj, nextlevel, cutoff)
|
| 156 |
+
|
| 157 |
+
|
| 158 |
+
@nx._dispatchable
|
| 159 |
+
def all_pairs_shortest_path_length(G, cutoff=None):
|
| 160 |
+
"""Computes the shortest path lengths between all nodes in `G`.
|
| 161 |
+
|
| 162 |
+
Parameters
|
| 163 |
+
----------
|
| 164 |
+
G : NetworkX graph
|
| 165 |
+
|
| 166 |
+
cutoff : integer, optional
|
| 167 |
+
Depth at which to stop the search. Only paths of length at most
|
| 168 |
+
`cutoff` are returned.
|
| 169 |
+
|
| 170 |
+
Returns
|
| 171 |
+
-------
|
| 172 |
+
lengths : iterator
|
| 173 |
+
(source, dictionary) iterator with dictionary keyed by target and
|
| 174 |
+
shortest path length as the key value.
|
| 175 |
+
|
| 176 |
+
Notes
|
| 177 |
+
-----
|
| 178 |
+
The iterator returned only has reachable node pairs.
|
| 179 |
+
|
| 180 |
+
Examples
|
| 181 |
+
--------
|
| 182 |
+
>>> G = nx.path_graph(5)
|
| 183 |
+
>>> length = dict(nx.all_pairs_shortest_path_length(G))
|
| 184 |
+
>>> for node in [0, 1, 2, 3, 4]:
|
| 185 |
+
... print(f"1 - {node}: {length[1][node]}")
|
| 186 |
+
1 - 0: 1
|
| 187 |
+
1 - 1: 0
|
| 188 |
+
1 - 2: 1
|
| 189 |
+
1 - 3: 2
|
| 190 |
+
1 - 4: 3
|
| 191 |
+
>>> length[3][2]
|
| 192 |
+
1
|
| 193 |
+
>>> length[2][2]
|
| 194 |
+
0
|
| 195 |
+
|
| 196 |
+
"""
|
| 197 |
+
length = single_source_shortest_path_length
|
| 198 |
+
# TODO This can be trivially parallelized.
|
| 199 |
+
for n in G:
|
| 200 |
+
yield (n, length(G, n, cutoff=cutoff))
|
| 201 |
+
|
| 202 |
+
|
| 203 |
+
@nx._dispatchable
|
| 204 |
+
def bidirectional_shortest_path(G, source, target):
|
| 205 |
+
"""Returns a list of nodes in a shortest path between source and target.
|
| 206 |
+
|
| 207 |
+
Parameters
|
| 208 |
+
----------
|
| 209 |
+
G : NetworkX graph
|
| 210 |
+
|
| 211 |
+
source : node label
|
| 212 |
+
starting node for path
|
| 213 |
+
|
| 214 |
+
target : node label
|
| 215 |
+
ending node for path
|
| 216 |
+
|
| 217 |
+
Returns
|
| 218 |
+
-------
|
| 219 |
+
path: list
|
| 220 |
+
List of nodes in a path from source to target.
|
| 221 |
+
|
| 222 |
+
Raises
|
| 223 |
+
------
|
| 224 |
+
NetworkXNoPath
|
| 225 |
+
If no path exists between source and target.
|
| 226 |
+
|
| 227 |
+
Examples
|
| 228 |
+
--------
|
| 229 |
+
>>> G = nx.Graph()
|
| 230 |
+
>>> nx.add_path(G, [0, 1, 2, 3, 0, 4, 5, 6, 7, 4])
|
| 231 |
+
>>> nx.bidirectional_shortest_path(G, 2, 6)
|
| 232 |
+
[2, 1, 0, 4, 5, 6]
|
| 233 |
+
|
| 234 |
+
See Also
|
| 235 |
+
--------
|
| 236 |
+
shortest_path
|
| 237 |
+
|
| 238 |
+
Notes
|
| 239 |
+
-----
|
| 240 |
+
This algorithm is used by shortest_path(G, source, target).
|
| 241 |
+
"""
|
| 242 |
+
|
| 243 |
+
if source not in G:
|
| 244 |
+
raise nx.NodeNotFound(f"Source {source} is not in G")
|
| 245 |
+
|
| 246 |
+
if target not in G:
|
| 247 |
+
raise nx.NodeNotFound(f"Target {target} is not in G")
|
| 248 |
+
|
| 249 |
+
# call helper to do the real work
|
| 250 |
+
results = _bidirectional_pred_succ(G, source, target)
|
| 251 |
+
pred, succ, w = results
|
| 252 |
+
|
| 253 |
+
# build path from pred+w+succ
|
| 254 |
+
path = []
|
| 255 |
+
# from source to w
|
| 256 |
+
while w is not None:
|
| 257 |
+
path.append(w)
|
| 258 |
+
w = pred[w]
|
| 259 |
+
path.reverse()
|
| 260 |
+
# from w to target
|
| 261 |
+
w = succ[path[-1]]
|
| 262 |
+
while w is not None:
|
| 263 |
+
path.append(w)
|
| 264 |
+
w = succ[w]
|
| 265 |
+
|
| 266 |
+
return path
|
| 267 |
+
|
| 268 |
+
|
| 269 |
+
def _bidirectional_pred_succ(G, source, target):
|
| 270 |
+
"""Bidirectional shortest path helper.
|
| 271 |
+
|
| 272 |
+
Returns (pred, succ, w) where
|
| 273 |
+
pred is a dictionary of predecessors from w to the source, and
|
| 274 |
+
succ is a dictionary of successors from w to the target.
|
| 275 |
+
"""
|
| 276 |
+
# does BFS from both source and target and meets in the middle
|
| 277 |
+
if target == source:
|
| 278 |
+
return ({target: None}, {source: None}, source)
|
| 279 |
+
|
| 280 |
+
# handle either directed or undirected
|
| 281 |
+
if G.is_directed():
|
| 282 |
+
Gpred = G.pred
|
| 283 |
+
Gsucc = G.succ
|
| 284 |
+
else:
|
| 285 |
+
Gpred = G.adj
|
| 286 |
+
Gsucc = G.adj
|
| 287 |
+
|
| 288 |
+
# predecessor and successors in search
|
| 289 |
+
pred = {source: None}
|
| 290 |
+
succ = {target: None}
|
| 291 |
+
|
| 292 |
+
# initialize fringes, start with forward
|
| 293 |
+
forward_fringe = [source]
|
| 294 |
+
reverse_fringe = [target]
|
| 295 |
+
|
| 296 |
+
while forward_fringe and reverse_fringe:
|
| 297 |
+
if len(forward_fringe) <= len(reverse_fringe):
|
| 298 |
+
this_level = forward_fringe
|
| 299 |
+
forward_fringe = []
|
| 300 |
+
for v in this_level:
|
| 301 |
+
for w in Gsucc[v]:
|
| 302 |
+
if w not in pred:
|
| 303 |
+
forward_fringe.append(w)
|
| 304 |
+
pred[w] = v
|
| 305 |
+
if w in succ: # path found
|
| 306 |
+
return pred, succ, w
|
| 307 |
+
else:
|
| 308 |
+
this_level = reverse_fringe
|
| 309 |
+
reverse_fringe = []
|
| 310 |
+
for v in this_level:
|
| 311 |
+
for w in Gpred[v]:
|
| 312 |
+
if w not in succ:
|
| 313 |
+
succ[w] = v
|
| 314 |
+
reverse_fringe.append(w)
|
| 315 |
+
if w in pred: # found path
|
| 316 |
+
return pred, succ, w
|
| 317 |
+
|
| 318 |
+
raise nx.NetworkXNoPath(f"No path between {source} and {target}.")
|
| 319 |
+
|
| 320 |
+
|
| 321 |
+
@nx._dispatchable
|
| 322 |
+
def single_source_shortest_path(G, source, cutoff=None):
|
| 323 |
+
"""Compute shortest path between source
|
| 324 |
+
and all other nodes reachable from source.
|
| 325 |
+
|
| 326 |
+
Parameters
|
| 327 |
+
----------
|
| 328 |
+
G : NetworkX graph
|
| 329 |
+
|
| 330 |
+
source : node label
|
| 331 |
+
Starting node for path
|
| 332 |
+
|
| 333 |
+
cutoff : integer, optional
|
| 334 |
+
Depth to stop the search. Only paths of length <= cutoff are returned.
|
| 335 |
+
|
| 336 |
+
Returns
|
| 337 |
+
-------
|
| 338 |
+
paths : dictionary
|
| 339 |
+
Dictionary, keyed by target, of shortest paths.
|
| 340 |
+
|
| 341 |
+
Examples
|
| 342 |
+
--------
|
| 343 |
+
>>> G = nx.path_graph(5)
|
| 344 |
+
>>> path = nx.single_source_shortest_path(G, 0)
|
| 345 |
+
>>> path[4]
|
| 346 |
+
[0, 1, 2, 3, 4]
|
| 347 |
+
|
| 348 |
+
Notes
|
| 349 |
+
-----
|
| 350 |
+
The shortest path is not necessarily unique. So there can be multiple
|
| 351 |
+
paths between the source and each target node, all of which have the
|
| 352 |
+
same 'shortest' length. For each target node, this function returns
|
| 353 |
+
only one of those paths.
|
| 354 |
+
|
| 355 |
+
See Also
|
| 356 |
+
--------
|
| 357 |
+
shortest_path
|
| 358 |
+
"""
|
| 359 |
+
if source not in G:
|
| 360 |
+
raise nx.NodeNotFound(f"Source {source} not in G")
|
| 361 |
+
|
| 362 |
+
def join(p1, p2):
|
| 363 |
+
return p1 + p2
|
| 364 |
+
|
| 365 |
+
if cutoff is None:
|
| 366 |
+
cutoff = float("inf")
|
| 367 |
+
nextlevel = {source: 1} # list of nodes to check at next level
|
| 368 |
+
paths = {source: [source]} # paths dictionary (paths to key from source)
|
| 369 |
+
return dict(_single_shortest_path(G.adj, nextlevel, paths, cutoff, join))
|
| 370 |
+
|
| 371 |
+
|
| 372 |
+
def _single_shortest_path(adj, firstlevel, paths, cutoff, join):
|
| 373 |
+
"""Returns shortest paths
|
| 374 |
+
|
| 375 |
+
Shortest Path helper function
|
| 376 |
+
Parameters
|
| 377 |
+
----------
|
| 378 |
+
adj : dict
|
| 379 |
+
Adjacency dict or view
|
| 380 |
+
firstlevel : dict
|
| 381 |
+
starting nodes, e.g. {source: 1} or {target: 1}
|
| 382 |
+
paths : dict
|
| 383 |
+
paths for starting nodes, e.g. {source: [source]}
|
| 384 |
+
cutoff : int or float
|
| 385 |
+
level at which we stop the process
|
| 386 |
+
join : function
|
| 387 |
+
function to construct a path from two partial paths. Requires two
|
| 388 |
+
list inputs `p1` and `p2`, and returns a list. Usually returns
|
| 389 |
+
`p1 + p2` (forward from source) or `p2 + p1` (backward from target)
|
| 390 |
+
"""
|
| 391 |
+
level = 0 # the current level
|
| 392 |
+
nextlevel = firstlevel
|
| 393 |
+
while nextlevel and cutoff > level:
|
| 394 |
+
thislevel = nextlevel
|
| 395 |
+
nextlevel = {}
|
| 396 |
+
for v in thislevel:
|
| 397 |
+
for w in adj[v]:
|
| 398 |
+
if w not in paths:
|
| 399 |
+
paths[w] = join(paths[v], [w])
|
| 400 |
+
nextlevel[w] = 1
|
| 401 |
+
level += 1
|
| 402 |
+
return paths
|
| 403 |
+
|
| 404 |
+
|
| 405 |
+
@nx._dispatchable
|
| 406 |
+
def single_target_shortest_path(G, target, cutoff=None):
|
| 407 |
+
"""Compute shortest path to target from all nodes that reach target.
|
| 408 |
+
|
| 409 |
+
Parameters
|
| 410 |
+
----------
|
| 411 |
+
G : NetworkX graph
|
| 412 |
+
|
| 413 |
+
target : node label
|
| 414 |
+
Target node for path
|
| 415 |
+
|
| 416 |
+
cutoff : integer, optional
|
| 417 |
+
Depth to stop the search. Only paths of length <= cutoff are returned.
|
| 418 |
+
|
| 419 |
+
Returns
|
| 420 |
+
-------
|
| 421 |
+
paths : dictionary
|
| 422 |
+
Dictionary, keyed by target, of shortest paths.
|
| 423 |
+
|
| 424 |
+
Examples
|
| 425 |
+
--------
|
| 426 |
+
>>> G = nx.path_graph(5, create_using=nx.DiGraph())
|
| 427 |
+
>>> path = nx.single_target_shortest_path(G, 4)
|
| 428 |
+
>>> path[0]
|
| 429 |
+
[0, 1, 2, 3, 4]
|
| 430 |
+
|
| 431 |
+
Notes
|
| 432 |
+
-----
|
| 433 |
+
The shortest path is not necessarily unique. So there can be multiple
|
| 434 |
+
paths between the source and each target node, all of which have the
|
| 435 |
+
same 'shortest' length. For each target node, this function returns
|
| 436 |
+
only one of those paths.
|
| 437 |
+
|
| 438 |
+
See Also
|
| 439 |
+
--------
|
| 440 |
+
shortest_path, single_source_shortest_path
|
| 441 |
+
"""
|
| 442 |
+
if target not in G:
|
| 443 |
+
raise nx.NodeNotFound(f"Target {target} not in G")
|
| 444 |
+
|
| 445 |
+
def join(p1, p2):
|
| 446 |
+
return p2 + p1
|
| 447 |
+
|
| 448 |
+
# handle undirected graphs
|
| 449 |
+
adj = G.pred if G.is_directed() else G.adj
|
| 450 |
+
if cutoff is None:
|
| 451 |
+
cutoff = float("inf")
|
| 452 |
+
nextlevel = {target: 1} # list of nodes to check at next level
|
| 453 |
+
paths = {target: [target]} # paths dictionary (paths to key from source)
|
| 454 |
+
return dict(_single_shortest_path(adj, nextlevel, paths, cutoff, join))
|
| 455 |
+
|
| 456 |
+
|
| 457 |
+
@nx._dispatchable
|
| 458 |
+
def all_pairs_shortest_path(G, cutoff=None):
|
| 459 |
+
"""Compute shortest paths between all nodes.
|
| 460 |
+
|
| 461 |
+
Parameters
|
| 462 |
+
----------
|
| 463 |
+
G : NetworkX graph
|
| 464 |
+
|
| 465 |
+
cutoff : integer, optional
|
| 466 |
+
Depth at which to stop the search. Only paths of length at most
|
| 467 |
+
`cutoff` are returned.
|
| 468 |
+
|
| 469 |
+
Returns
|
| 470 |
+
-------
|
| 471 |
+
paths : iterator
|
| 472 |
+
Dictionary, keyed by source and target, of shortest paths.
|
| 473 |
+
|
| 474 |
+
Examples
|
| 475 |
+
--------
|
| 476 |
+
>>> G = nx.path_graph(5)
|
| 477 |
+
>>> path = dict(nx.all_pairs_shortest_path(G))
|
| 478 |
+
>>> print(path[0][4])
|
| 479 |
+
[0, 1, 2, 3, 4]
|
| 480 |
+
|
| 481 |
+
Notes
|
| 482 |
+
-----
|
| 483 |
+
There may be multiple shortest paths with the same length between
|
| 484 |
+
two nodes. For each pair, this function returns only one of those paths.
|
| 485 |
+
|
| 486 |
+
See Also
|
| 487 |
+
--------
|
| 488 |
+
floyd_warshall
|
| 489 |
+
all_pairs_all_shortest_paths
|
| 490 |
+
|
| 491 |
+
"""
|
| 492 |
+
# TODO This can be trivially parallelized.
|
| 493 |
+
for n in G:
|
| 494 |
+
yield (n, single_source_shortest_path(G, n, cutoff=cutoff))
|
| 495 |
+
|
| 496 |
+
|
| 497 |
+
@nx._dispatchable
|
| 498 |
+
def predecessor(G, source, target=None, cutoff=None, return_seen=None):
|
| 499 |
+
"""Returns dict of predecessors for the path from source to all nodes in G.
|
| 500 |
+
|
| 501 |
+
Parameters
|
| 502 |
+
----------
|
| 503 |
+
G : NetworkX graph
|
| 504 |
+
|
| 505 |
+
source : node label
|
| 506 |
+
Starting node for path
|
| 507 |
+
|
| 508 |
+
target : node label, optional
|
| 509 |
+
Ending node for path. If provided only predecessors between
|
| 510 |
+
source and target are returned
|
| 511 |
+
|
| 512 |
+
cutoff : integer, optional
|
| 513 |
+
Depth to stop the search. Only paths of length <= cutoff are returned.
|
| 514 |
+
|
| 515 |
+
return_seen : bool, optional (default=None)
|
| 516 |
+
Whether to return a dictionary, keyed by node, of the level (number of
|
| 517 |
+
hops) to reach the node (as seen during breadth-first-search).
|
| 518 |
+
|
| 519 |
+
Returns
|
| 520 |
+
-------
|
| 521 |
+
pred : dictionary
|
| 522 |
+
Dictionary, keyed by node, of predecessors in the shortest path.
|
| 523 |
+
|
| 524 |
+
|
| 525 |
+
(pred, seen): tuple of dictionaries
|
| 526 |
+
If `return_seen` argument is set to `True`, then a tuple of dictionaries
|
| 527 |
+
is returned. The first element is the dictionary, keyed by node, of
|
| 528 |
+
predecessors in the shortest path. The second element is the dictionary,
|
| 529 |
+
keyed by node, of the level (number of hops) to reach the node (as seen
|
| 530 |
+
during breadth-first-search).
|
| 531 |
+
|
| 532 |
+
Examples
|
| 533 |
+
--------
|
| 534 |
+
>>> G = nx.path_graph(4)
|
| 535 |
+
>>> list(G)
|
| 536 |
+
[0, 1, 2, 3]
|
| 537 |
+
>>> nx.predecessor(G, 0)
|
| 538 |
+
{0: [], 1: [0], 2: [1], 3: [2]}
|
| 539 |
+
>>> nx.predecessor(G, 0, return_seen=True)
|
| 540 |
+
({0: [], 1: [0], 2: [1], 3: [2]}, {0: 0, 1: 1, 2: 2, 3: 3})
|
| 541 |
+
|
| 542 |
+
|
| 543 |
+
"""
|
| 544 |
+
if source not in G:
|
| 545 |
+
raise nx.NodeNotFound(f"Source {source} not in G")
|
| 546 |
+
|
| 547 |
+
level = 0 # the current level
|
| 548 |
+
nextlevel = [source] # list of nodes to check at next level
|
| 549 |
+
seen = {source: level} # level (number of hops) when seen in BFS
|
| 550 |
+
pred = {source: []} # predecessor dictionary
|
| 551 |
+
while nextlevel:
|
| 552 |
+
level = level + 1
|
| 553 |
+
thislevel = nextlevel
|
| 554 |
+
nextlevel = []
|
| 555 |
+
for v in thislevel:
|
| 556 |
+
for w in G[v]:
|
| 557 |
+
if w not in seen:
|
| 558 |
+
pred[w] = [v]
|
| 559 |
+
seen[w] = level
|
| 560 |
+
nextlevel.append(w)
|
| 561 |
+
elif seen[w] == level: # add v to predecessor list if it
|
| 562 |
+
pred[w].append(v) # is at the correct level
|
| 563 |
+
if cutoff and cutoff <= level:
|
| 564 |
+
break
|
| 565 |
+
|
| 566 |
+
if target is not None:
|
| 567 |
+
if return_seen:
|
| 568 |
+
if target not in pred:
|
| 569 |
+
return ([], -1) # No predecessor
|
| 570 |
+
return (pred[target], seen[target])
|
| 571 |
+
else:
|
| 572 |
+
if target not in pred:
|
| 573 |
+
return [] # No predecessor
|
| 574 |
+
return pred[target]
|
| 575 |
+
else:
|
| 576 |
+
if return_seen:
|
| 577 |
+
return (pred, seen)
|
| 578 |
+
else:
|
| 579 |
+
return pred
|
code/LaDi-RL-old-qwen-cod/LaDi-RL-old-qwen-cod/venv/lib64/python3.10/site-packages/networkx/algorithms/shortest_paths/weighted.py
ADDED
|
@@ -0,0 +1,2520 @@
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|
| 1 |
+
"""
|
| 2 |
+
Shortest path algorithms for weighted graphs.
|
| 3 |
+
"""
|
| 4 |
+
|
| 5 |
+
from collections import deque
|
| 6 |
+
from heapq import heappop, heappush
|
| 7 |
+
from itertools import count
|
| 8 |
+
|
| 9 |
+
import networkx as nx
|
| 10 |
+
from networkx.algorithms.shortest_paths.generic import _build_paths_from_predecessors
|
| 11 |
+
|
| 12 |
+
__all__ = [
|
| 13 |
+
"dijkstra_path",
|
| 14 |
+
"dijkstra_path_length",
|
| 15 |
+
"bidirectional_dijkstra",
|
| 16 |
+
"single_source_dijkstra",
|
| 17 |
+
"single_source_dijkstra_path",
|
| 18 |
+
"single_source_dijkstra_path_length",
|
| 19 |
+
"multi_source_dijkstra",
|
| 20 |
+
"multi_source_dijkstra_path",
|
| 21 |
+
"multi_source_dijkstra_path_length",
|
| 22 |
+
"all_pairs_dijkstra",
|
| 23 |
+
"all_pairs_dijkstra_path",
|
| 24 |
+
"all_pairs_dijkstra_path_length",
|
| 25 |
+
"dijkstra_predecessor_and_distance",
|
| 26 |
+
"bellman_ford_path",
|
| 27 |
+
"bellman_ford_path_length",
|
| 28 |
+
"single_source_bellman_ford",
|
| 29 |
+
"single_source_bellman_ford_path",
|
| 30 |
+
"single_source_bellman_ford_path_length",
|
| 31 |
+
"all_pairs_bellman_ford_path",
|
| 32 |
+
"all_pairs_bellman_ford_path_length",
|
| 33 |
+
"bellman_ford_predecessor_and_distance",
|
| 34 |
+
"negative_edge_cycle",
|
| 35 |
+
"find_negative_cycle",
|
| 36 |
+
"goldberg_radzik",
|
| 37 |
+
"johnson",
|
| 38 |
+
]
|
| 39 |
+
|
| 40 |
+
|
| 41 |
+
def _weight_function(G, weight):
|
| 42 |
+
"""Returns a function that returns the weight of an edge.
|
| 43 |
+
|
| 44 |
+
The returned function is specifically suitable for input to
|
| 45 |
+
functions :func:`_dijkstra` and :func:`_bellman_ford_relaxation`.
|
| 46 |
+
|
| 47 |
+
Parameters
|
| 48 |
+
----------
|
| 49 |
+
G : NetworkX graph.
|
| 50 |
+
|
| 51 |
+
weight : string or function
|
| 52 |
+
If it is callable, `weight` itself is returned. If it is a string,
|
| 53 |
+
it is assumed to be the name of the edge attribute that represents
|
| 54 |
+
the weight of an edge. In that case, a function is returned that
|
| 55 |
+
gets the edge weight according to the specified edge attribute.
|
| 56 |
+
|
| 57 |
+
Returns
|
| 58 |
+
-------
|
| 59 |
+
function
|
| 60 |
+
This function returns a callable that accepts exactly three inputs:
|
| 61 |
+
a node, an node adjacent to the first one, and the edge attribute
|
| 62 |
+
dictionary for the eedge joining those nodes. That function returns
|
| 63 |
+
a number representing the weight of an edge.
|
| 64 |
+
|
| 65 |
+
If `G` is a multigraph, and `weight` is not callable, the
|
| 66 |
+
minimum edge weight over all parallel edges is returned. If any edge
|
| 67 |
+
does not have an attribute with key `weight`, it is assumed to
|
| 68 |
+
have weight one.
|
| 69 |
+
|
| 70 |
+
"""
|
| 71 |
+
if callable(weight):
|
| 72 |
+
return weight
|
| 73 |
+
# If the weight keyword argument is not callable, we assume it is a
|
| 74 |
+
# string representing the edge attribute containing the weight of
|
| 75 |
+
# the edge.
|
| 76 |
+
if G.is_multigraph():
|
| 77 |
+
return lambda u, v, d: min(attr.get(weight, 1) for attr in d.values())
|
| 78 |
+
return lambda u, v, data: data.get(weight, 1)
|
| 79 |
+
|
| 80 |
+
|
| 81 |
+
@nx._dispatchable(edge_attrs="weight")
|
| 82 |
+
def dijkstra_path(G, source, target, weight="weight"):
|
| 83 |
+
"""Returns the shortest weighted path from source to target in G.
|
| 84 |
+
|
| 85 |
+
Uses Dijkstra's Method to compute the shortest weighted path
|
| 86 |
+
between two nodes in a graph.
|
| 87 |
+
|
| 88 |
+
Parameters
|
| 89 |
+
----------
|
| 90 |
+
G : NetworkX graph
|
| 91 |
+
|
| 92 |
+
source : node
|
| 93 |
+
Starting node
|
| 94 |
+
|
| 95 |
+
target : node
|
| 96 |
+
Ending node
|
| 97 |
+
|
| 98 |
+
weight : string or function
|
| 99 |
+
If this is a string, then edge weights will be accessed via the
|
| 100 |
+
edge attribute with this key (that is, the weight of the edge
|
| 101 |
+
joining `u` to `v` will be ``G.edges[u, v][weight]``). If no
|
| 102 |
+
such edge attribute exists, the weight of the edge is assumed to
|
| 103 |
+
be one.
|
| 104 |
+
|
| 105 |
+
If this is a function, the weight of an edge is the value
|
| 106 |
+
returned by the function. The function must accept exactly three
|
| 107 |
+
positional arguments: the two endpoints of an edge and the
|
| 108 |
+
dictionary of edge attributes for that edge. The function must
|
| 109 |
+
return a number or None to indicate a hidden edge.
|
| 110 |
+
|
| 111 |
+
Returns
|
| 112 |
+
-------
|
| 113 |
+
path : list
|
| 114 |
+
List of nodes in a shortest path.
|
| 115 |
+
|
| 116 |
+
Raises
|
| 117 |
+
------
|
| 118 |
+
NodeNotFound
|
| 119 |
+
If `source` is not in `G`.
|
| 120 |
+
|
| 121 |
+
NetworkXNoPath
|
| 122 |
+
If no path exists between source and target.
|
| 123 |
+
|
| 124 |
+
Examples
|
| 125 |
+
--------
|
| 126 |
+
>>> G = nx.path_graph(5)
|
| 127 |
+
>>> print(nx.dijkstra_path(G, 0, 4))
|
| 128 |
+
[0, 1, 2, 3, 4]
|
| 129 |
+
|
| 130 |
+
Find edges of shortest path in Multigraph
|
| 131 |
+
|
| 132 |
+
>>> G = nx.MultiDiGraph()
|
| 133 |
+
>>> G.add_weighted_edges_from([(1, 2, 0.75), (1, 2, 0.5), (2, 3, 0.5), (1, 3, 1.5)])
|
| 134 |
+
>>> nodes = nx.dijkstra_path(G, 1, 3)
|
| 135 |
+
>>> edges = nx.utils.pairwise(nodes)
|
| 136 |
+
>>> list(
|
| 137 |
+
... (u, v, min(G[u][v], key=lambda k: G[u][v][k].get("weight", 1)))
|
| 138 |
+
... for u, v in edges
|
| 139 |
+
... )
|
| 140 |
+
[(1, 2, 1), (2, 3, 0)]
|
| 141 |
+
|
| 142 |
+
Notes
|
| 143 |
+
-----
|
| 144 |
+
Edge weight attributes must be numerical.
|
| 145 |
+
Distances are calculated as sums of weighted edges traversed.
|
| 146 |
+
|
| 147 |
+
The weight function can be used to hide edges by returning None.
|
| 148 |
+
So ``weight = lambda u, v, d: 1 if d['color']=="red" else None``
|
| 149 |
+
will find the shortest red path.
|
| 150 |
+
|
| 151 |
+
The weight function can be used to include node weights.
|
| 152 |
+
|
| 153 |
+
>>> def func(u, v, d):
|
| 154 |
+
... node_u_wt = G.nodes[u].get("node_weight", 1)
|
| 155 |
+
... node_v_wt = G.nodes[v].get("node_weight", 1)
|
| 156 |
+
... edge_wt = d.get("weight", 1)
|
| 157 |
+
... return node_u_wt / 2 + node_v_wt / 2 + edge_wt
|
| 158 |
+
|
| 159 |
+
In this example we take the average of start and end node
|
| 160 |
+
weights of an edge and add it to the weight of the edge.
|
| 161 |
+
|
| 162 |
+
The function :func:`single_source_dijkstra` computes both
|
| 163 |
+
path and length-of-path if you need both, use that.
|
| 164 |
+
|
| 165 |
+
See Also
|
| 166 |
+
--------
|
| 167 |
+
bidirectional_dijkstra
|
| 168 |
+
bellman_ford_path
|
| 169 |
+
single_source_dijkstra
|
| 170 |
+
"""
|
| 171 |
+
(length, path) = single_source_dijkstra(G, source, target=target, weight=weight)
|
| 172 |
+
return path
|
| 173 |
+
|
| 174 |
+
|
| 175 |
+
@nx._dispatchable(edge_attrs="weight")
|
| 176 |
+
def dijkstra_path_length(G, source, target, weight="weight"):
|
| 177 |
+
"""Returns the shortest weighted path length in G from source to target.
|
| 178 |
+
|
| 179 |
+
Uses Dijkstra's Method to compute the shortest weighted path length
|
| 180 |
+
between two nodes in a graph.
|
| 181 |
+
|
| 182 |
+
Parameters
|
| 183 |
+
----------
|
| 184 |
+
G : NetworkX graph
|
| 185 |
+
|
| 186 |
+
source : node label
|
| 187 |
+
starting node for path
|
| 188 |
+
|
| 189 |
+
target : node label
|
| 190 |
+
ending node for path
|
| 191 |
+
|
| 192 |
+
weight : string or function
|
| 193 |
+
If this is a string, then edge weights will be accessed via the
|
| 194 |
+
edge attribute with this key (that is, the weight of the edge
|
| 195 |
+
joining `u` to `v` will be ``G.edges[u, v][weight]``). If no
|
| 196 |
+
such edge attribute exists, the weight of the edge is assumed to
|
| 197 |
+
be one.
|
| 198 |
+
|
| 199 |
+
If this is a function, the weight of an edge is the value
|
| 200 |
+
returned by the function. The function must accept exactly three
|
| 201 |
+
positional arguments: the two endpoints of an edge and the
|
| 202 |
+
dictionary of edge attributes for that edge. The function must
|
| 203 |
+
return a number or None to indicate a hidden edge.
|
| 204 |
+
|
| 205 |
+
Returns
|
| 206 |
+
-------
|
| 207 |
+
length : number
|
| 208 |
+
Shortest path length.
|
| 209 |
+
|
| 210 |
+
Raises
|
| 211 |
+
------
|
| 212 |
+
NodeNotFound
|
| 213 |
+
If `source` is not in `G`.
|
| 214 |
+
|
| 215 |
+
NetworkXNoPath
|
| 216 |
+
If no path exists between source and target.
|
| 217 |
+
|
| 218 |
+
Examples
|
| 219 |
+
--------
|
| 220 |
+
>>> G = nx.path_graph(5)
|
| 221 |
+
>>> nx.dijkstra_path_length(G, 0, 4)
|
| 222 |
+
4
|
| 223 |
+
|
| 224 |
+
Notes
|
| 225 |
+
-----
|
| 226 |
+
Edge weight attributes must be numerical.
|
| 227 |
+
Distances are calculated as sums of weighted edges traversed.
|
| 228 |
+
|
| 229 |
+
The weight function can be used to hide edges by returning None.
|
| 230 |
+
So ``weight = lambda u, v, d: 1 if d['color']=="red" else None``
|
| 231 |
+
will find the shortest red path.
|
| 232 |
+
|
| 233 |
+
The function :func:`single_source_dijkstra` computes both
|
| 234 |
+
path and length-of-path if you need both, use that.
|
| 235 |
+
|
| 236 |
+
See Also
|
| 237 |
+
--------
|
| 238 |
+
bidirectional_dijkstra
|
| 239 |
+
bellman_ford_path_length
|
| 240 |
+
single_source_dijkstra
|
| 241 |
+
|
| 242 |
+
"""
|
| 243 |
+
if source not in G:
|
| 244 |
+
raise nx.NodeNotFound(f"Node {source} not found in graph")
|
| 245 |
+
if source == target:
|
| 246 |
+
return 0
|
| 247 |
+
weight = _weight_function(G, weight)
|
| 248 |
+
length = _dijkstra(G, source, weight, target=target)
|
| 249 |
+
try:
|
| 250 |
+
return length[target]
|
| 251 |
+
except KeyError as err:
|
| 252 |
+
raise nx.NetworkXNoPath(f"Node {target} not reachable from {source}") from err
|
| 253 |
+
|
| 254 |
+
|
| 255 |
+
@nx._dispatchable(edge_attrs="weight")
|
| 256 |
+
def single_source_dijkstra_path(G, source, cutoff=None, weight="weight"):
|
| 257 |
+
"""Find shortest weighted paths in G from a source node.
|
| 258 |
+
|
| 259 |
+
Compute shortest path between source and all other reachable
|
| 260 |
+
nodes for a weighted graph.
|
| 261 |
+
|
| 262 |
+
Parameters
|
| 263 |
+
----------
|
| 264 |
+
G : NetworkX graph
|
| 265 |
+
|
| 266 |
+
source : node
|
| 267 |
+
Starting node for path.
|
| 268 |
+
|
| 269 |
+
cutoff : integer or float, optional
|
| 270 |
+
Length (sum of edge weights) at which the search is stopped.
|
| 271 |
+
If cutoff is provided, only return paths with summed weight <= cutoff.
|
| 272 |
+
|
| 273 |
+
weight : string or function
|
| 274 |
+
If this is a string, then edge weights will be accessed via the
|
| 275 |
+
edge attribute with this key (that is, the weight of the edge
|
| 276 |
+
joining `u` to `v` will be ``G.edges[u, v][weight]``). If no
|
| 277 |
+
such edge attribute exists, the weight of the edge is assumed to
|
| 278 |
+
be one.
|
| 279 |
+
|
| 280 |
+
If this is a function, the weight of an edge is the value
|
| 281 |
+
returned by the function. The function must accept exactly three
|
| 282 |
+
positional arguments: the two endpoints of an edge and the
|
| 283 |
+
dictionary of edge attributes for that edge. The function must
|
| 284 |
+
return a number or None to indicate a hidden edge.
|
| 285 |
+
|
| 286 |
+
Returns
|
| 287 |
+
-------
|
| 288 |
+
paths : dictionary
|
| 289 |
+
Dictionary of shortest path lengths keyed by target.
|
| 290 |
+
|
| 291 |
+
Raises
|
| 292 |
+
------
|
| 293 |
+
NodeNotFound
|
| 294 |
+
If `source` is not in `G`.
|
| 295 |
+
|
| 296 |
+
Examples
|
| 297 |
+
--------
|
| 298 |
+
>>> G = nx.path_graph(5)
|
| 299 |
+
>>> path = nx.single_source_dijkstra_path(G, 0)
|
| 300 |
+
>>> path[4]
|
| 301 |
+
[0, 1, 2, 3, 4]
|
| 302 |
+
|
| 303 |
+
Notes
|
| 304 |
+
-----
|
| 305 |
+
Edge weight attributes must be numerical.
|
| 306 |
+
Distances are calculated as sums of weighted edges traversed.
|
| 307 |
+
|
| 308 |
+
The weight function can be used to hide edges by returning None.
|
| 309 |
+
So ``weight = lambda u, v, d: 1 if d['color']=="red" else None``
|
| 310 |
+
will find the shortest red path.
|
| 311 |
+
|
| 312 |
+
See Also
|
| 313 |
+
--------
|
| 314 |
+
single_source_dijkstra, single_source_bellman_ford
|
| 315 |
+
|
| 316 |
+
"""
|
| 317 |
+
return multi_source_dijkstra_path(G, {source}, cutoff=cutoff, weight=weight)
|
| 318 |
+
|
| 319 |
+
|
| 320 |
+
@nx._dispatchable(edge_attrs="weight")
|
| 321 |
+
def single_source_dijkstra_path_length(G, source, cutoff=None, weight="weight"):
|
| 322 |
+
"""Find shortest weighted path lengths in G from a source node.
|
| 323 |
+
|
| 324 |
+
Compute the shortest path length between source and all other
|
| 325 |
+
reachable nodes for a weighted graph.
|
| 326 |
+
|
| 327 |
+
Parameters
|
| 328 |
+
----------
|
| 329 |
+
G : NetworkX graph
|
| 330 |
+
|
| 331 |
+
source : node label
|
| 332 |
+
Starting node for path
|
| 333 |
+
|
| 334 |
+
cutoff : integer or float, optional
|
| 335 |
+
Length (sum of edge weights) at which the search is stopped.
|
| 336 |
+
If cutoff is provided, only return paths with summed weight <= cutoff.
|
| 337 |
+
|
| 338 |
+
weight : string or function
|
| 339 |
+
If this is a string, then edge weights will be accessed via the
|
| 340 |
+
edge attribute with this key (that is, the weight of the edge
|
| 341 |
+
joining `u` to `v` will be ``G.edges[u, v][weight]``). If no
|
| 342 |
+
such edge attribute exists, the weight of the edge is assumed to
|
| 343 |
+
be one.
|
| 344 |
+
|
| 345 |
+
If this is a function, the weight of an edge is the value
|
| 346 |
+
returned by the function. The function must accept exactly three
|
| 347 |
+
positional arguments: the two endpoints of an edge and the
|
| 348 |
+
dictionary of edge attributes for that edge. The function must
|
| 349 |
+
return a number or None to indicate a hidden edge.
|
| 350 |
+
|
| 351 |
+
Returns
|
| 352 |
+
-------
|
| 353 |
+
length : dict
|
| 354 |
+
Dict keyed by node to shortest path length from source.
|
| 355 |
+
|
| 356 |
+
Raises
|
| 357 |
+
------
|
| 358 |
+
NodeNotFound
|
| 359 |
+
If `source` is not in `G`.
|
| 360 |
+
|
| 361 |
+
Examples
|
| 362 |
+
--------
|
| 363 |
+
>>> G = nx.path_graph(5)
|
| 364 |
+
>>> length = nx.single_source_dijkstra_path_length(G, 0)
|
| 365 |
+
>>> length[4]
|
| 366 |
+
4
|
| 367 |
+
>>> for node in [0, 1, 2, 3, 4]:
|
| 368 |
+
... print(f"{node}: {length[node]}")
|
| 369 |
+
0: 0
|
| 370 |
+
1: 1
|
| 371 |
+
2: 2
|
| 372 |
+
3: 3
|
| 373 |
+
4: 4
|
| 374 |
+
|
| 375 |
+
Notes
|
| 376 |
+
-----
|
| 377 |
+
Edge weight attributes must be numerical.
|
| 378 |
+
Distances are calculated as sums of weighted edges traversed.
|
| 379 |
+
|
| 380 |
+
The weight function can be used to hide edges by returning None.
|
| 381 |
+
So ``weight = lambda u, v, d: 1 if d['color']=="red" else None``
|
| 382 |
+
will find the shortest red path.
|
| 383 |
+
|
| 384 |
+
See Also
|
| 385 |
+
--------
|
| 386 |
+
single_source_dijkstra, single_source_bellman_ford_path_length
|
| 387 |
+
|
| 388 |
+
"""
|
| 389 |
+
return multi_source_dijkstra_path_length(G, {source}, cutoff=cutoff, weight=weight)
|
| 390 |
+
|
| 391 |
+
|
| 392 |
+
@nx._dispatchable(edge_attrs="weight")
|
| 393 |
+
def single_source_dijkstra(G, source, target=None, cutoff=None, weight="weight"):
|
| 394 |
+
"""Find shortest weighted paths and lengths from a source node.
|
| 395 |
+
|
| 396 |
+
Compute the shortest path length between source and all other
|
| 397 |
+
reachable nodes for a weighted graph.
|
| 398 |
+
|
| 399 |
+
Uses Dijkstra's algorithm to compute shortest paths and lengths
|
| 400 |
+
between a source and all other reachable nodes in a weighted graph.
|
| 401 |
+
|
| 402 |
+
Parameters
|
| 403 |
+
----------
|
| 404 |
+
G : NetworkX graph
|
| 405 |
+
|
| 406 |
+
source : node label
|
| 407 |
+
Starting node for path
|
| 408 |
+
|
| 409 |
+
target : node label, optional
|
| 410 |
+
Ending node for path
|
| 411 |
+
|
| 412 |
+
cutoff : integer or float, optional
|
| 413 |
+
Length (sum of edge weights) at which the search is stopped.
|
| 414 |
+
If cutoff is provided, only return paths with summed weight <= cutoff.
|
| 415 |
+
|
| 416 |
+
|
| 417 |
+
weight : string or function
|
| 418 |
+
If this is a string, then edge weights will be accessed via the
|
| 419 |
+
edge attribute with this key (that is, the weight of the edge
|
| 420 |
+
joining `u` to `v` will be ``G.edges[u, v][weight]``). If no
|
| 421 |
+
such edge attribute exists, the weight of the edge is assumed to
|
| 422 |
+
be one.
|
| 423 |
+
|
| 424 |
+
If this is a function, the weight of an edge is the value
|
| 425 |
+
returned by the function. The function must accept exactly three
|
| 426 |
+
positional arguments: the two endpoints of an edge and the
|
| 427 |
+
dictionary of edge attributes for that edge. The function must
|
| 428 |
+
return a number or None to indicate a hidden edge.
|
| 429 |
+
|
| 430 |
+
Returns
|
| 431 |
+
-------
|
| 432 |
+
distance, path : pair of dictionaries, or numeric and list.
|
| 433 |
+
If target is None, paths and lengths to all nodes are computed.
|
| 434 |
+
The return value is a tuple of two dictionaries keyed by target nodes.
|
| 435 |
+
The first dictionary stores distance to each target node.
|
| 436 |
+
The second stores the path to each target node.
|
| 437 |
+
If target is not None, returns a tuple (distance, path), where
|
| 438 |
+
distance is the distance from source to target and path is a list
|
| 439 |
+
representing the path from source to target.
|
| 440 |
+
|
| 441 |
+
Raises
|
| 442 |
+
------
|
| 443 |
+
NodeNotFound
|
| 444 |
+
If `source` is not in `G`.
|
| 445 |
+
|
| 446 |
+
Examples
|
| 447 |
+
--------
|
| 448 |
+
>>> G = nx.path_graph(5)
|
| 449 |
+
>>> length, path = nx.single_source_dijkstra(G, 0)
|
| 450 |
+
>>> length[4]
|
| 451 |
+
4
|
| 452 |
+
>>> for node in [0, 1, 2, 3, 4]:
|
| 453 |
+
... print(f"{node}: {length[node]}")
|
| 454 |
+
0: 0
|
| 455 |
+
1: 1
|
| 456 |
+
2: 2
|
| 457 |
+
3: 3
|
| 458 |
+
4: 4
|
| 459 |
+
>>> path[4]
|
| 460 |
+
[0, 1, 2, 3, 4]
|
| 461 |
+
>>> length, path = nx.single_source_dijkstra(G, 0, 1)
|
| 462 |
+
>>> length
|
| 463 |
+
1
|
| 464 |
+
>>> path
|
| 465 |
+
[0, 1]
|
| 466 |
+
|
| 467 |
+
Notes
|
| 468 |
+
-----
|
| 469 |
+
Edge weight attributes must be numerical.
|
| 470 |
+
Distances are calculated as sums of weighted edges traversed.
|
| 471 |
+
|
| 472 |
+
The weight function can be used to hide edges by returning None.
|
| 473 |
+
So ``weight = lambda u, v, d: 1 if d['color']=="red" else None``
|
| 474 |
+
will find the shortest red path.
|
| 475 |
+
|
| 476 |
+
Based on the Python cookbook recipe (119466) at
|
| 477 |
+
https://code.activestate.com/recipes/119466/
|
| 478 |
+
|
| 479 |
+
This algorithm is not guaranteed to work if edge weights
|
| 480 |
+
are negative or are floating point numbers
|
| 481 |
+
(overflows and roundoff errors can cause problems).
|
| 482 |
+
|
| 483 |
+
See Also
|
| 484 |
+
--------
|
| 485 |
+
single_source_dijkstra_path
|
| 486 |
+
single_source_dijkstra_path_length
|
| 487 |
+
single_source_bellman_ford
|
| 488 |
+
"""
|
| 489 |
+
return multi_source_dijkstra(
|
| 490 |
+
G, {source}, cutoff=cutoff, target=target, weight=weight
|
| 491 |
+
)
|
| 492 |
+
|
| 493 |
+
|
| 494 |
+
@nx._dispatchable(edge_attrs="weight")
|
| 495 |
+
def multi_source_dijkstra_path(G, sources, cutoff=None, weight="weight"):
|
| 496 |
+
"""Find shortest weighted paths in G from a given set of source
|
| 497 |
+
nodes.
|
| 498 |
+
|
| 499 |
+
Compute shortest path between any of the source nodes and all other
|
| 500 |
+
reachable nodes for a weighted graph.
|
| 501 |
+
|
| 502 |
+
Parameters
|
| 503 |
+
----------
|
| 504 |
+
G : NetworkX graph
|
| 505 |
+
|
| 506 |
+
sources : non-empty set of nodes
|
| 507 |
+
Starting nodes for paths. If this is just a set containing a
|
| 508 |
+
single node, then all paths computed by this function will start
|
| 509 |
+
from that node. If there are two or more nodes in the set, the
|
| 510 |
+
computed paths may begin from any one of the start nodes.
|
| 511 |
+
|
| 512 |
+
cutoff : integer or float, optional
|
| 513 |
+
Length (sum of edge weights) at which the search is stopped.
|
| 514 |
+
If cutoff is provided, only return paths with summed weight <= cutoff.
|
| 515 |
+
|
| 516 |
+
weight : string or function
|
| 517 |
+
If this is a string, then edge weights will be accessed via the
|
| 518 |
+
edge attribute with this key (that is, the weight of the edge
|
| 519 |
+
joining `u` to `v` will be ``G.edges[u, v][weight]``). If no
|
| 520 |
+
such edge attribute exists, the weight of the edge is assumed to
|
| 521 |
+
be one.
|
| 522 |
+
|
| 523 |
+
If this is a function, the weight of an edge is the value
|
| 524 |
+
returned by the function. The function must accept exactly three
|
| 525 |
+
positional arguments: the two endpoints of an edge and the
|
| 526 |
+
dictionary of edge attributes for that edge. The function must
|
| 527 |
+
return a number or None to indicate a hidden edge.
|
| 528 |
+
|
| 529 |
+
Returns
|
| 530 |
+
-------
|
| 531 |
+
paths : dictionary
|
| 532 |
+
Dictionary of shortest paths keyed by target.
|
| 533 |
+
|
| 534 |
+
Examples
|
| 535 |
+
--------
|
| 536 |
+
>>> G = nx.path_graph(5)
|
| 537 |
+
>>> path = nx.multi_source_dijkstra_path(G, {0, 4})
|
| 538 |
+
>>> path[1]
|
| 539 |
+
[0, 1]
|
| 540 |
+
>>> path[3]
|
| 541 |
+
[4, 3]
|
| 542 |
+
|
| 543 |
+
Notes
|
| 544 |
+
-----
|
| 545 |
+
Edge weight attributes must be numerical.
|
| 546 |
+
Distances are calculated as sums of weighted edges traversed.
|
| 547 |
+
|
| 548 |
+
The weight function can be used to hide edges by returning None.
|
| 549 |
+
So ``weight = lambda u, v, d: 1 if d['color']=="red" else None``
|
| 550 |
+
will find the shortest red path.
|
| 551 |
+
|
| 552 |
+
Raises
|
| 553 |
+
------
|
| 554 |
+
ValueError
|
| 555 |
+
If `sources` is empty.
|
| 556 |
+
NodeNotFound
|
| 557 |
+
If any of `sources` is not in `G`.
|
| 558 |
+
|
| 559 |
+
See Also
|
| 560 |
+
--------
|
| 561 |
+
multi_source_dijkstra, multi_source_bellman_ford
|
| 562 |
+
|
| 563 |
+
"""
|
| 564 |
+
length, path = multi_source_dijkstra(G, sources, cutoff=cutoff, weight=weight)
|
| 565 |
+
return path
|
| 566 |
+
|
| 567 |
+
|
| 568 |
+
@nx._dispatchable(edge_attrs="weight")
|
| 569 |
+
def multi_source_dijkstra_path_length(G, sources, cutoff=None, weight="weight"):
|
| 570 |
+
"""Find shortest weighted path lengths in G from a given set of
|
| 571 |
+
source nodes.
|
| 572 |
+
|
| 573 |
+
Compute the shortest path length between any of the source nodes and
|
| 574 |
+
all other reachable nodes for a weighted graph.
|
| 575 |
+
|
| 576 |
+
Parameters
|
| 577 |
+
----------
|
| 578 |
+
G : NetworkX graph
|
| 579 |
+
|
| 580 |
+
sources : non-empty set of nodes
|
| 581 |
+
Starting nodes for paths. If this is just a set containing a
|
| 582 |
+
single node, then all paths computed by this function will start
|
| 583 |
+
from that node. If there are two or more nodes in the set, the
|
| 584 |
+
computed paths may begin from any one of the start nodes.
|
| 585 |
+
|
| 586 |
+
cutoff : integer or float, optional
|
| 587 |
+
Length (sum of edge weights) at which the search is stopped.
|
| 588 |
+
If cutoff is provided, only return paths with summed weight <= cutoff.
|
| 589 |
+
|
| 590 |
+
weight : string or function
|
| 591 |
+
If this is a string, then edge weights will be accessed via the
|
| 592 |
+
edge attribute with this key (that is, the weight of the edge
|
| 593 |
+
joining `u` to `v` will be ``G.edges[u, v][weight]``). If no
|
| 594 |
+
such edge attribute exists, the weight of the edge is assumed to
|
| 595 |
+
be one.
|
| 596 |
+
|
| 597 |
+
If this is a function, the weight of an edge is the value
|
| 598 |
+
returned by the function. The function must accept exactly three
|
| 599 |
+
positional arguments: the two endpoints of an edge and the
|
| 600 |
+
dictionary of edge attributes for that edge. The function must
|
| 601 |
+
return a number or None to indicate a hidden edge.
|
| 602 |
+
|
| 603 |
+
Returns
|
| 604 |
+
-------
|
| 605 |
+
length : dict
|
| 606 |
+
Dict keyed by node to shortest path length to nearest source.
|
| 607 |
+
|
| 608 |
+
Examples
|
| 609 |
+
--------
|
| 610 |
+
>>> G = nx.path_graph(5)
|
| 611 |
+
>>> length = nx.multi_source_dijkstra_path_length(G, {0, 4})
|
| 612 |
+
>>> for node in [0, 1, 2, 3, 4]:
|
| 613 |
+
... print(f"{node}: {length[node]}")
|
| 614 |
+
0: 0
|
| 615 |
+
1: 1
|
| 616 |
+
2: 2
|
| 617 |
+
3: 1
|
| 618 |
+
4: 0
|
| 619 |
+
|
| 620 |
+
Notes
|
| 621 |
+
-----
|
| 622 |
+
Edge weight attributes must be numerical.
|
| 623 |
+
Distances are calculated as sums of weighted edges traversed.
|
| 624 |
+
|
| 625 |
+
The weight function can be used to hide edges by returning None.
|
| 626 |
+
So ``weight = lambda u, v, d: 1 if d['color']=="red" else None``
|
| 627 |
+
will find the shortest red path.
|
| 628 |
+
|
| 629 |
+
Raises
|
| 630 |
+
------
|
| 631 |
+
ValueError
|
| 632 |
+
If `sources` is empty.
|
| 633 |
+
NodeNotFound
|
| 634 |
+
If any of `sources` is not in `G`.
|
| 635 |
+
|
| 636 |
+
See Also
|
| 637 |
+
--------
|
| 638 |
+
multi_source_dijkstra
|
| 639 |
+
|
| 640 |
+
"""
|
| 641 |
+
if not sources:
|
| 642 |
+
raise ValueError("sources must not be empty")
|
| 643 |
+
for s in sources:
|
| 644 |
+
if s not in G:
|
| 645 |
+
raise nx.NodeNotFound(f"Node {s} not found in graph")
|
| 646 |
+
weight = _weight_function(G, weight)
|
| 647 |
+
return _dijkstra_multisource(G, sources, weight, cutoff=cutoff)
|
| 648 |
+
|
| 649 |
+
|
| 650 |
+
@nx._dispatchable(edge_attrs="weight")
|
| 651 |
+
def multi_source_dijkstra(G, sources, target=None, cutoff=None, weight="weight"):
|
| 652 |
+
"""Find shortest weighted paths and lengths from a given set of
|
| 653 |
+
source nodes.
|
| 654 |
+
|
| 655 |
+
Uses Dijkstra's algorithm to compute the shortest paths and lengths
|
| 656 |
+
between one of the source nodes and the given `target`, or all other
|
| 657 |
+
reachable nodes if not specified, for a weighted graph.
|
| 658 |
+
|
| 659 |
+
Parameters
|
| 660 |
+
----------
|
| 661 |
+
G : NetworkX graph
|
| 662 |
+
|
| 663 |
+
sources : non-empty set of nodes
|
| 664 |
+
Starting nodes for paths. If this is just a set containing a
|
| 665 |
+
single node, then all paths computed by this function will start
|
| 666 |
+
from that node. If there are two or more nodes in the set, the
|
| 667 |
+
computed paths may begin from any one of the start nodes.
|
| 668 |
+
|
| 669 |
+
target : node label, optional
|
| 670 |
+
Ending node for path
|
| 671 |
+
|
| 672 |
+
cutoff : integer or float, optional
|
| 673 |
+
Length (sum of edge weights) at which the search is stopped.
|
| 674 |
+
If cutoff is provided, only return paths with summed weight <= cutoff.
|
| 675 |
+
|
| 676 |
+
weight : string or function
|
| 677 |
+
If this is a string, then edge weights will be accessed via the
|
| 678 |
+
edge attribute with this key (that is, the weight of the edge
|
| 679 |
+
joining `u` to `v` will be ``G.edges[u, v][weight]``). If no
|
| 680 |
+
such edge attribute exists, the weight of the edge is assumed to
|
| 681 |
+
be one.
|
| 682 |
+
|
| 683 |
+
If this is a function, the weight of an edge is the value
|
| 684 |
+
returned by the function. The function must accept exactly three
|
| 685 |
+
positional arguments: the two endpoints of an edge and the
|
| 686 |
+
dictionary of edge attributes for that edge. The function must
|
| 687 |
+
return a number or None to indicate a hidden edge.
|
| 688 |
+
|
| 689 |
+
Returns
|
| 690 |
+
-------
|
| 691 |
+
distance, path : pair of dictionaries, or numeric and list
|
| 692 |
+
If target is None, returns a tuple of two dictionaries keyed by node.
|
| 693 |
+
The first dictionary stores distance from one of the source nodes.
|
| 694 |
+
The second stores the path from one of the sources to that node.
|
| 695 |
+
If target is not None, returns a tuple of (distance, path) where
|
| 696 |
+
distance is the distance from source to target and path is a list
|
| 697 |
+
representing the path from source to target.
|
| 698 |
+
|
| 699 |
+
Examples
|
| 700 |
+
--------
|
| 701 |
+
>>> G = nx.path_graph(5)
|
| 702 |
+
>>> length, path = nx.multi_source_dijkstra(G, {0, 4})
|
| 703 |
+
>>> for node in [0, 1, 2, 3, 4]:
|
| 704 |
+
... print(f"{node}: {length[node]}")
|
| 705 |
+
0: 0
|
| 706 |
+
1: 1
|
| 707 |
+
2: 2
|
| 708 |
+
3: 1
|
| 709 |
+
4: 0
|
| 710 |
+
>>> path[1]
|
| 711 |
+
[0, 1]
|
| 712 |
+
>>> path[3]
|
| 713 |
+
[4, 3]
|
| 714 |
+
|
| 715 |
+
>>> length, path = nx.multi_source_dijkstra(G, {0, 4}, 1)
|
| 716 |
+
>>> length
|
| 717 |
+
1
|
| 718 |
+
>>> path
|
| 719 |
+
[0, 1]
|
| 720 |
+
|
| 721 |
+
Notes
|
| 722 |
+
-----
|
| 723 |
+
Edge weight attributes must be numerical.
|
| 724 |
+
Distances are calculated as sums of weighted edges traversed.
|
| 725 |
+
|
| 726 |
+
The weight function can be used to hide edges by returning None.
|
| 727 |
+
So ``weight = lambda u, v, d: 1 if d['color']=="red" else None``
|
| 728 |
+
will find the shortest red path.
|
| 729 |
+
|
| 730 |
+
Based on the Python cookbook recipe (119466) at
|
| 731 |
+
https://code.activestate.com/recipes/119466/
|
| 732 |
+
|
| 733 |
+
This algorithm is not guaranteed to work if edge weights
|
| 734 |
+
are negative or are floating point numbers
|
| 735 |
+
(overflows and roundoff errors can cause problems).
|
| 736 |
+
|
| 737 |
+
Raises
|
| 738 |
+
------
|
| 739 |
+
ValueError
|
| 740 |
+
If `sources` is empty.
|
| 741 |
+
NodeNotFound
|
| 742 |
+
If any of `sources` is not in `G`.
|
| 743 |
+
|
| 744 |
+
See Also
|
| 745 |
+
--------
|
| 746 |
+
multi_source_dijkstra_path
|
| 747 |
+
multi_source_dijkstra_path_length
|
| 748 |
+
|
| 749 |
+
"""
|
| 750 |
+
if not sources:
|
| 751 |
+
raise ValueError("sources must not be empty")
|
| 752 |
+
for s in sources:
|
| 753 |
+
if s not in G:
|
| 754 |
+
raise nx.NodeNotFound(f"Node {s} not found in graph")
|
| 755 |
+
if target in sources:
|
| 756 |
+
return (0, [target])
|
| 757 |
+
weight = _weight_function(G, weight)
|
| 758 |
+
paths = {source: [source] for source in sources} # dictionary of paths
|
| 759 |
+
dist = _dijkstra_multisource(
|
| 760 |
+
G, sources, weight, paths=paths, cutoff=cutoff, target=target
|
| 761 |
+
)
|
| 762 |
+
if target is None:
|
| 763 |
+
return (dist, paths)
|
| 764 |
+
try:
|
| 765 |
+
return (dist[target], paths[target])
|
| 766 |
+
except KeyError as err:
|
| 767 |
+
raise nx.NetworkXNoPath(f"No path to {target}.") from err
|
| 768 |
+
|
| 769 |
+
|
| 770 |
+
def _dijkstra(G, source, weight, pred=None, paths=None, cutoff=None, target=None):
|
| 771 |
+
"""Uses Dijkstra's algorithm to find shortest weighted paths from a
|
| 772 |
+
single source.
|
| 773 |
+
|
| 774 |
+
This is a convenience function for :func:`_dijkstra_multisource`
|
| 775 |
+
with all the arguments the same, except the keyword argument
|
| 776 |
+
`sources` set to ``[source]``.
|
| 777 |
+
|
| 778 |
+
"""
|
| 779 |
+
return _dijkstra_multisource(
|
| 780 |
+
G, [source], weight, pred=pred, paths=paths, cutoff=cutoff, target=target
|
| 781 |
+
)
|
| 782 |
+
|
| 783 |
+
|
| 784 |
+
def _dijkstra_multisource(
|
| 785 |
+
G, sources, weight, pred=None, paths=None, cutoff=None, target=None
|
| 786 |
+
):
|
| 787 |
+
"""Uses Dijkstra's algorithm to find shortest weighted paths
|
| 788 |
+
|
| 789 |
+
Parameters
|
| 790 |
+
----------
|
| 791 |
+
G : NetworkX graph
|
| 792 |
+
|
| 793 |
+
sources : non-empty iterable of nodes
|
| 794 |
+
Starting nodes for paths. If this is just an iterable containing
|
| 795 |
+
a single node, then all paths computed by this function will
|
| 796 |
+
start from that node. If there are two or more nodes in this
|
| 797 |
+
iterable, the computed paths may begin from any one of the start
|
| 798 |
+
nodes.
|
| 799 |
+
|
| 800 |
+
weight: function
|
| 801 |
+
Function with (u, v, data) input that returns that edge's weight
|
| 802 |
+
or None to indicate a hidden edge
|
| 803 |
+
|
| 804 |
+
pred: dict of lists, optional(default=None)
|
| 805 |
+
dict to store a list of predecessors keyed by that node
|
| 806 |
+
If None, predecessors are not stored.
|
| 807 |
+
|
| 808 |
+
paths: dict, optional (default=None)
|
| 809 |
+
dict to store the path list from source to each node, keyed by node.
|
| 810 |
+
If None, paths are not stored.
|
| 811 |
+
|
| 812 |
+
target : node label, optional
|
| 813 |
+
Ending node for path. Search is halted when target is found.
|
| 814 |
+
|
| 815 |
+
cutoff : integer or float, optional
|
| 816 |
+
Length (sum of edge weights) at which the search is stopped.
|
| 817 |
+
If cutoff is provided, only return paths with summed weight <= cutoff.
|
| 818 |
+
|
| 819 |
+
Returns
|
| 820 |
+
-------
|
| 821 |
+
distance : dictionary
|
| 822 |
+
A mapping from node to shortest distance to that node from one
|
| 823 |
+
of the source nodes.
|
| 824 |
+
|
| 825 |
+
Raises
|
| 826 |
+
------
|
| 827 |
+
NodeNotFound
|
| 828 |
+
If any of `sources` is not in `G`.
|
| 829 |
+
|
| 830 |
+
Notes
|
| 831 |
+
-----
|
| 832 |
+
The optional predecessor and path dictionaries can be accessed by
|
| 833 |
+
the caller through the original pred and paths objects passed
|
| 834 |
+
as arguments. No need to explicitly return pred or paths.
|
| 835 |
+
|
| 836 |
+
"""
|
| 837 |
+
G_succ = G._adj # For speed-up (and works for both directed and undirected graphs)
|
| 838 |
+
|
| 839 |
+
push = heappush
|
| 840 |
+
pop = heappop
|
| 841 |
+
dist = {} # dictionary of final distances
|
| 842 |
+
seen = {}
|
| 843 |
+
# fringe is heapq with 3-tuples (distance,c,node)
|
| 844 |
+
# use the count c to avoid comparing nodes (may not be able to)
|
| 845 |
+
c = count()
|
| 846 |
+
fringe = []
|
| 847 |
+
for source in sources:
|
| 848 |
+
seen[source] = 0
|
| 849 |
+
push(fringe, (0, next(c), source))
|
| 850 |
+
while fringe:
|
| 851 |
+
(d, _, v) = pop(fringe)
|
| 852 |
+
if v in dist:
|
| 853 |
+
continue # already searched this node.
|
| 854 |
+
dist[v] = d
|
| 855 |
+
if v == target:
|
| 856 |
+
break
|
| 857 |
+
for u, e in G_succ[v].items():
|
| 858 |
+
cost = weight(v, u, e)
|
| 859 |
+
if cost is None:
|
| 860 |
+
continue
|
| 861 |
+
vu_dist = dist[v] + cost
|
| 862 |
+
if cutoff is not None:
|
| 863 |
+
if vu_dist > cutoff:
|
| 864 |
+
continue
|
| 865 |
+
if u in dist:
|
| 866 |
+
u_dist = dist[u]
|
| 867 |
+
if vu_dist < u_dist:
|
| 868 |
+
raise ValueError("Contradictory paths found:", "negative weights?")
|
| 869 |
+
elif pred is not None and vu_dist == u_dist:
|
| 870 |
+
pred[u].append(v)
|
| 871 |
+
elif u not in seen or vu_dist < seen[u]:
|
| 872 |
+
seen[u] = vu_dist
|
| 873 |
+
push(fringe, (vu_dist, next(c), u))
|
| 874 |
+
if paths is not None:
|
| 875 |
+
paths[u] = paths[v] + [u]
|
| 876 |
+
if pred is not None:
|
| 877 |
+
pred[u] = [v]
|
| 878 |
+
elif vu_dist == seen[u]:
|
| 879 |
+
if pred is not None:
|
| 880 |
+
pred[u].append(v)
|
| 881 |
+
|
| 882 |
+
# The optional predecessor and path dictionaries can be accessed
|
| 883 |
+
# by the caller via the pred and paths objects passed as arguments.
|
| 884 |
+
return dist
|
| 885 |
+
|
| 886 |
+
|
| 887 |
+
@nx._dispatchable(edge_attrs="weight")
|
| 888 |
+
def dijkstra_predecessor_and_distance(G, source, cutoff=None, weight="weight"):
|
| 889 |
+
"""Compute weighted shortest path length and predecessors.
|
| 890 |
+
|
| 891 |
+
Uses Dijkstra's Method to obtain the shortest weighted paths
|
| 892 |
+
and return dictionaries of predecessors for each node and
|
| 893 |
+
distance for each node from the `source`.
|
| 894 |
+
|
| 895 |
+
Parameters
|
| 896 |
+
----------
|
| 897 |
+
G : NetworkX graph
|
| 898 |
+
|
| 899 |
+
source : node label
|
| 900 |
+
Starting node for path
|
| 901 |
+
|
| 902 |
+
cutoff : integer or float, optional
|
| 903 |
+
Length (sum of edge weights) at which the search is stopped.
|
| 904 |
+
If cutoff is provided, only return paths with summed weight <= cutoff.
|
| 905 |
+
|
| 906 |
+
weight : string or function
|
| 907 |
+
If this is a string, then edge weights will be accessed via the
|
| 908 |
+
edge attribute with this key (that is, the weight of the edge
|
| 909 |
+
joining `u` to `v` will be ``G.edges[u, v][weight]``). If no
|
| 910 |
+
such edge attribute exists, the weight of the edge is assumed to
|
| 911 |
+
be one.
|
| 912 |
+
|
| 913 |
+
If this is a function, the weight of an edge is the value
|
| 914 |
+
returned by the function. The function must accept exactly three
|
| 915 |
+
positional arguments: the two endpoints of an edge and the
|
| 916 |
+
dictionary of edge attributes for that edge. The function must
|
| 917 |
+
return a number or None to indicate a hidden edge.
|
| 918 |
+
|
| 919 |
+
Returns
|
| 920 |
+
-------
|
| 921 |
+
pred, distance : dictionaries
|
| 922 |
+
Returns two dictionaries representing a list of predecessors
|
| 923 |
+
of a node and the distance to each node.
|
| 924 |
+
|
| 925 |
+
Raises
|
| 926 |
+
------
|
| 927 |
+
NodeNotFound
|
| 928 |
+
If `source` is not in `G`.
|
| 929 |
+
|
| 930 |
+
Notes
|
| 931 |
+
-----
|
| 932 |
+
Edge weight attributes must be numerical.
|
| 933 |
+
Distances are calculated as sums of weighted edges traversed.
|
| 934 |
+
|
| 935 |
+
The list of predecessors contains more than one element only when
|
| 936 |
+
there are more than one shortest paths to the key node.
|
| 937 |
+
|
| 938 |
+
Examples
|
| 939 |
+
--------
|
| 940 |
+
>>> G = nx.path_graph(5, create_using=nx.DiGraph())
|
| 941 |
+
>>> pred, dist = nx.dijkstra_predecessor_and_distance(G, 0)
|
| 942 |
+
>>> sorted(pred.items())
|
| 943 |
+
[(0, []), (1, [0]), (2, [1]), (3, [2]), (4, [3])]
|
| 944 |
+
>>> sorted(dist.items())
|
| 945 |
+
[(0, 0), (1, 1), (2, 2), (3, 3), (4, 4)]
|
| 946 |
+
|
| 947 |
+
>>> pred, dist = nx.dijkstra_predecessor_and_distance(G, 0, 1)
|
| 948 |
+
>>> sorted(pred.items())
|
| 949 |
+
[(0, []), (1, [0])]
|
| 950 |
+
>>> sorted(dist.items())
|
| 951 |
+
[(0, 0), (1, 1)]
|
| 952 |
+
"""
|
| 953 |
+
if source not in G:
|
| 954 |
+
raise nx.NodeNotFound(f"Node {source} is not found in the graph")
|
| 955 |
+
weight = _weight_function(G, weight)
|
| 956 |
+
pred = {source: []} # dictionary of predecessors
|
| 957 |
+
return (pred, _dijkstra(G, source, weight, pred=pred, cutoff=cutoff))
|
| 958 |
+
|
| 959 |
+
|
| 960 |
+
@nx._dispatchable(edge_attrs="weight")
|
| 961 |
+
def all_pairs_dijkstra(G, cutoff=None, weight="weight"):
|
| 962 |
+
"""Find shortest weighted paths and lengths between all nodes.
|
| 963 |
+
|
| 964 |
+
Parameters
|
| 965 |
+
----------
|
| 966 |
+
G : NetworkX graph
|
| 967 |
+
|
| 968 |
+
cutoff : integer or float, optional
|
| 969 |
+
Length (sum of edge weights) at which the search is stopped.
|
| 970 |
+
If cutoff is provided, only return paths with summed weight <= cutoff.
|
| 971 |
+
|
| 972 |
+
weight : string or function
|
| 973 |
+
If this is a string, then edge weights will be accessed via the
|
| 974 |
+
edge attribute with this key (that is, the weight of the edge
|
| 975 |
+
joining `u` to `v` will be ``G.edge[u][v][weight]``). If no
|
| 976 |
+
such edge attribute exists, the weight of the edge is assumed to
|
| 977 |
+
be one.
|
| 978 |
+
|
| 979 |
+
If this is a function, the weight of an edge is the value
|
| 980 |
+
returned by the function. The function must accept exactly three
|
| 981 |
+
positional arguments: the two endpoints of an edge and the
|
| 982 |
+
dictionary of edge attributes for that edge. The function must
|
| 983 |
+
return a number or None to indicate a hidden edge.
|
| 984 |
+
|
| 985 |
+
Yields
|
| 986 |
+
------
|
| 987 |
+
(node, (distance, path)) : (node obj, (dict, dict))
|
| 988 |
+
Each source node has two associated dicts. The first holds distance
|
| 989 |
+
keyed by target and the second holds paths keyed by target.
|
| 990 |
+
(See single_source_dijkstra for the source/target node terminology.)
|
| 991 |
+
If desired you can apply `dict()` to this function to create a dict
|
| 992 |
+
keyed by source node to the two dicts.
|
| 993 |
+
|
| 994 |
+
Examples
|
| 995 |
+
--------
|
| 996 |
+
>>> G = nx.path_graph(5)
|
| 997 |
+
>>> len_path = dict(nx.all_pairs_dijkstra(G))
|
| 998 |
+
>>> len_path[3][0][1]
|
| 999 |
+
2
|
| 1000 |
+
>>> for node in [0, 1, 2, 3, 4]:
|
| 1001 |
+
... print(f"3 - {node}: {len_path[3][0][node]}")
|
| 1002 |
+
3 - 0: 3
|
| 1003 |
+
3 - 1: 2
|
| 1004 |
+
3 - 2: 1
|
| 1005 |
+
3 - 3: 0
|
| 1006 |
+
3 - 4: 1
|
| 1007 |
+
>>> len_path[3][1][1]
|
| 1008 |
+
[3, 2, 1]
|
| 1009 |
+
>>> for n, (dist, path) in nx.all_pairs_dijkstra(G):
|
| 1010 |
+
... print(path[1])
|
| 1011 |
+
[0, 1]
|
| 1012 |
+
[1]
|
| 1013 |
+
[2, 1]
|
| 1014 |
+
[3, 2, 1]
|
| 1015 |
+
[4, 3, 2, 1]
|
| 1016 |
+
|
| 1017 |
+
Notes
|
| 1018 |
+
-----
|
| 1019 |
+
Edge weight attributes must be numerical.
|
| 1020 |
+
Distances are calculated as sums of weighted edges traversed.
|
| 1021 |
+
|
| 1022 |
+
The yielded dicts only have keys for reachable nodes.
|
| 1023 |
+
"""
|
| 1024 |
+
for n in G:
|
| 1025 |
+
dist, path = single_source_dijkstra(G, n, cutoff=cutoff, weight=weight)
|
| 1026 |
+
yield (n, (dist, path))
|
| 1027 |
+
|
| 1028 |
+
|
| 1029 |
+
@nx._dispatchable(edge_attrs="weight")
|
| 1030 |
+
def all_pairs_dijkstra_path_length(G, cutoff=None, weight="weight"):
|
| 1031 |
+
"""Compute shortest path lengths between all nodes in a weighted graph.
|
| 1032 |
+
|
| 1033 |
+
Parameters
|
| 1034 |
+
----------
|
| 1035 |
+
G : NetworkX graph
|
| 1036 |
+
|
| 1037 |
+
cutoff : integer or float, optional
|
| 1038 |
+
Length (sum of edge weights) at which the search is stopped.
|
| 1039 |
+
If cutoff is provided, only return paths with summed weight <= cutoff.
|
| 1040 |
+
|
| 1041 |
+
weight : string or function
|
| 1042 |
+
If this is a string, then edge weights will be accessed via the
|
| 1043 |
+
edge attribute with this key (that is, the weight of the edge
|
| 1044 |
+
joining `u` to `v` will be ``G.edges[u, v][weight]``). If no
|
| 1045 |
+
such edge attribute exists, the weight of the edge is assumed to
|
| 1046 |
+
be one.
|
| 1047 |
+
|
| 1048 |
+
If this is a function, the weight of an edge is the value
|
| 1049 |
+
returned by the function. The function must accept exactly three
|
| 1050 |
+
positional arguments: the two endpoints of an edge and the
|
| 1051 |
+
dictionary of edge attributes for that edge. The function must
|
| 1052 |
+
return a number or None to indicate a hidden edge.
|
| 1053 |
+
|
| 1054 |
+
Returns
|
| 1055 |
+
-------
|
| 1056 |
+
distance : iterator
|
| 1057 |
+
(source, dictionary) iterator with dictionary keyed by target and
|
| 1058 |
+
shortest path length as the key value.
|
| 1059 |
+
|
| 1060 |
+
Examples
|
| 1061 |
+
--------
|
| 1062 |
+
>>> G = nx.path_graph(5)
|
| 1063 |
+
>>> length = dict(nx.all_pairs_dijkstra_path_length(G))
|
| 1064 |
+
>>> for node in [0, 1, 2, 3, 4]:
|
| 1065 |
+
... print(f"1 - {node}: {length[1][node]}")
|
| 1066 |
+
1 - 0: 1
|
| 1067 |
+
1 - 1: 0
|
| 1068 |
+
1 - 2: 1
|
| 1069 |
+
1 - 3: 2
|
| 1070 |
+
1 - 4: 3
|
| 1071 |
+
>>> length[3][2]
|
| 1072 |
+
1
|
| 1073 |
+
>>> length[2][2]
|
| 1074 |
+
0
|
| 1075 |
+
|
| 1076 |
+
Notes
|
| 1077 |
+
-----
|
| 1078 |
+
Edge weight attributes must be numerical.
|
| 1079 |
+
Distances are calculated as sums of weighted edges traversed.
|
| 1080 |
+
|
| 1081 |
+
The dictionary returned only has keys for reachable node pairs.
|
| 1082 |
+
"""
|
| 1083 |
+
length = single_source_dijkstra_path_length
|
| 1084 |
+
for n in G:
|
| 1085 |
+
yield (n, length(G, n, cutoff=cutoff, weight=weight))
|
| 1086 |
+
|
| 1087 |
+
|
| 1088 |
+
@nx._dispatchable(edge_attrs="weight")
|
| 1089 |
+
def all_pairs_dijkstra_path(G, cutoff=None, weight="weight"):
|
| 1090 |
+
"""Compute shortest paths between all nodes in a weighted graph.
|
| 1091 |
+
|
| 1092 |
+
Parameters
|
| 1093 |
+
----------
|
| 1094 |
+
G : NetworkX graph
|
| 1095 |
+
|
| 1096 |
+
cutoff : integer or float, optional
|
| 1097 |
+
Length (sum of edge weights) at which the search is stopped.
|
| 1098 |
+
If cutoff is provided, only return paths with summed weight <= cutoff.
|
| 1099 |
+
|
| 1100 |
+
weight : string or function
|
| 1101 |
+
If this is a string, then edge weights will be accessed via the
|
| 1102 |
+
edge attribute with this key (that is, the weight of the edge
|
| 1103 |
+
joining `u` to `v` will be ``G.edges[u, v][weight]``). If no
|
| 1104 |
+
such edge attribute exists, the weight of the edge is assumed to
|
| 1105 |
+
be one.
|
| 1106 |
+
|
| 1107 |
+
If this is a function, the weight of an edge is the value
|
| 1108 |
+
returned by the function. The function must accept exactly three
|
| 1109 |
+
positional arguments: the two endpoints of an edge and the
|
| 1110 |
+
dictionary of edge attributes for that edge. The function must
|
| 1111 |
+
return a number or None to indicate a hidden edge.
|
| 1112 |
+
|
| 1113 |
+
Returns
|
| 1114 |
+
-------
|
| 1115 |
+
paths : iterator
|
| 1116 |
+
(source, dictionary) iterator with dictionary keyed by target and
|
| 1117 |
+
shortest path as the key value.
|
| 1118 |
+
|
| 1119 |
+
Examples
|
| 1120 |
+
--------
|
| 1121 |
+
>>> G = nx.path_graph(5)
|
| 1122 |
+
>>> path = dict(nx.all_pairs_dijkstra_path(G))
|
| 1123 |
+
>>> path[0][4]
|
| 1124 |
+
[0, 1, 2, 3, 4]
|
| 1125 |
+
|
| 1126 |
+
Notes
|
| 1127 |
+
-----
|
| 1128 |
+
Edge weight attributes must be numerical.
|
| 1129 |
+
Distances are calculated as sums of weighted edges traversed.
|
| 1130 |
+
|
| 1131 |
+
See Also
|
| 1132 |
+
--------
|
| 1133 |
+
floyd_warshall, all_pairs_bellman_ford_path
|
| 1134 |
+
|
| 1135 |
+
"""
|
| 1136 |
+
path = single_source_dijkstra_path
|
| 1137 |
+
# TODO This can be trivially parallelized.
|
| 1138 |
+
for n in G:
|
| 1139 |
+
yield (n, path(G, n, cutoff=cutoff, weight=weight))
|
| 1140 |
+
|
| 1141 |
+
|
| 1142 |
+
@nx._dispatchable(edge_attrs="weight")
|
| 1143 |
+
def bellman_ford_predecessor_and_distance(
|
| 1144 |
+
G, source, target=None, weight="weight", heuristic=False
|
| 1145 |
+
):
|
| 1146 |
+
"""Compute shortest path lengths and predecessors on shortest paths
|
| 1147 |
+
in weighted graphs.
|
| 1148 |
+
|
| 1149 |
+
The algorithm has a running time of $O(mn)$ where $n$ is the number of
|
| 1150 |
+
nodes and $m$ is the number of edges. It is slower than Dijkstra but
|
| 1151 |
+
can handle negative edge weights.
|
| 1152 |
+
|
| 1153 |
+
If a negative cycle is detected, you can use :func:`find_negative_cycle`
|
| 1154 |
+
to return the cycle and examine it. Shortest paths are not defined when
|
| 1155 |
+
a negative cycle exists because once reached, the path can cycle forever
|
| 1156 |
+
to build up arbitrarily low weights.
|
| 1157 |
+
|
| 1158 |
+
Parameters
|
| 1159 |
+
----------
|
| 1160 |
+
G : NetworkX graph
|
| 1161 |
+
The algorithm works for all types of graphs, including directed
|
| 1162 |
+
graphs and multigraphs.
|
| 1163 |
+
|
| 1164 |
+
source: node label
|
| 1165 |
+
Starting node for path
|
| 1166 |
+
|
| 1167 |
+
target : node label, optional
|
| 1168 |
+
Ending node for path
|
| 1169 |
+
|
| 1170 |
+
weight : string or function
|
| 1171 |
+
If this is a string, then edge weights will be accessed via the
|
| 1172 |
+
edge attribute with this key (that is, the weight of the edge
|
| 1173 |
+
joining `u` to `v` will be ``G.edges[u, v][weight]``). If no
|
| 1174 |
+
such edge attribute exists, the weight of the edge is assumed to
|
| 1175 |
+
be one.
|
| 1176 |
+
|
| 1177 |
+
If this is a function, the weight of an edge is the value
|
| 1178 |
+
returned by the function. The function must accept exactly three
|
| 1179 |
+
positional arguments: the two endpoints of an edge and the
|
| 1180 |
+
dictionary of edge attributes for that edge. The function must
|
| 1181 |
+
return a number.
|
| 1182 |
+
|
| 1183 |
+
heuristic : bool
|
| 1184 |
+
Determines whether to use a heuristic to early detect negative
|
| 1185 |
+
cycles at a hopefully negligible cost.
|
| 1186 |
+
|
| 1187 |
+
Returns
|
| 1188 |
+
-------
|
| 1189 |
+
pred, dist : dictionaries
|
| 1190 |
+
Returns two dictionaries keyed by node to predecessor in the
|
| 1191 |
+
path and to the distance from the source respectively.
|
| 1192 |
+
|
| 1193 |
+
Raises
|
| 1194 |
+
------
|
| 1195 |
+
NodeNotFound
|
| 1196 |
+
If `source` is not in `G`.
|
| 1197 |
+
|
| 1198 |
+
NetworkXUnbounded
|
| 1199 |
+
If the (di)graph contains a negative (di)cycle, the
|
| 1200 |
+
algorithm raises an exception to indicate the presence of the
|
| 1201 |
+
negative (di)cycle. Note: any negative weight edge in an
|
| 1202 |
+
undirected graph is a negative cycle.
|
| 1203 |
+
|
| 1204 |
+
Examples
|
| 1205 |
+
--------
|
| 1206 |
+
>>> G = nx.path_graph(5, create_using=nx.DiGraph())
|
| 1207 |
+
>>> pred, dist = nx.bellman_ford_predecessor_and_distance(G, 0)
|
| 1208 |
+
>>> sorted(pred.items())
|
| 1209 |
+
[(0, []), (1, [0]), (2, [1]), (3, [2]), (4, [3])]
|
| 1210 |
+
>>> sorted(dist.items())
|
| 1211 |
+
[(0, 0), (1, 1), (2, 2), (3, 3), (4, 4)]
|
| 1212 |
+
|
| 1213 |
+
>>> pred, dist = nx.bellman_ford_predecessor_and_distance(G, 0, 1)
|
| 1214 |
+
>>> sorted(pred.items())
|
| 1215 |
+
[(0, []), (1, [0]), (2, [1]), (3, [2]), (4, [3])]
|
| 1216 |
+
>>> sorted(dist.items())
|
| 1217 |
+
[(0, 0), (1, 1), (2, 2), (3, 3), (4, 4)]
|
| 1218 |
+
|
| 1219 |
+
>>> G = nx.cycle_graph(5, create_using=nx.DiGraph())
|
| 1220 |
+
>>> G[1][2]["weight"] = -7
|
| 1221 |
+
>>> nx.bellman_ford_predecessor_and_distance(G, 0)
|
| 1222 |
+
Traceback (most recent call last):
|
| 1223 |
+
...
|
| 1224 |
+
networkx.exception.NetworkXUnbounded: Negative cycle detected.
|
| 1225 |
+
|
| 1226 |
+
See Also
|
| 1227 |
+
--------
|
| 1228 |
+
find_negative_cycle
|
| 1229 |
+
|
| 1230 |
+
Notes
|
| 1231 |
+
-----
|
| 1232 |
+
Edge weight attributes must be numerical.
|
| 1233 |
+
Distances are calculated as sums of weighted edges traversed.
|
| 1234 |
+
|
| 1235 |
+
The dictionaries returned only have keys for nodes reachable from
|
| 1236 |
+
the source.
|
| 1237 |
+
|
| 1238 |
+
In the case where the (di)graph is not connected, if a component
|
| 1239 |
+
not containing the source contains a negative (di)cycle, it
|
| 1240 |
+
will not be detected.
|
| 1241 |
+
|
| 1242 |
+
In NetworkX v2.1 and prior, the source node had predecessor `[None]`.
|
| 1243 |
+
In NetworkX v2.2 this changed to the source node having predecessor `[]`
|
| 1244 |
+
"""
|
| 1245 |
+
if source not in G:
|
| 1246 |
+
raise nx.NodeNotFound(f"Node {source} is not found in the graph")
|
| 1247 |
+
weight = _weight_function(G, weight)
|
| 1248 |
+
if G.is_multigraph():
|
| 1249 |
+
if any(
|
| 1250 |
+
weight(u, v, {k: d}) < 0
|
| 1251 |
+
for u, v, k, d in nx.selfloop_edges(G, keys=True, data=True)
|
| 1252 |
+
):
|
| 1253 |
+
raise nx.NetworkXUnbounded("Negative cycle detected.")
|
| 1254 |
+
else:
|
| 1255 |
+
if any(weight(u, v, d) < 0 for u, v, d in nx.selfloop_edges(G, data=True)):
|
| 1256 |
+
raise nx.NetworkXUnbounded("Negative cycle detected.")
|
| 1257 |
+
|
| 1258 |
+
dist = {source: 0}
|
| 1259 |
+
pred = {source: []}
|
| 1260 |
+
|
| 1261 |
+
if len(G) == 1:
|
| 1262 |
+
return pred, dist
|
| 1263 |
+
|
| 1264 |
+
weight = _weight_function(G, weight)
|
| 1265 |
+
|
| 1266 |
+
dist = _bellman_ford(
|
| 1267 |
+
G, [source], weight, pred=pred, dist=dist, target=target, heuristic=heuristic
|
| 1268 |
+
)
|
| 1269 |
+
return (pred, dist)
|
| 1270 |
+
|
| 1271 |
+
|
| 1272 |
+
def _bellman_ford(
|
| 1273 |
+
G,
|
| 1274 |
+
source,
|
| 1275 |
+
weight,
|
| 1276 |
+
pred=None,
|
| 1277 |
+
paths=None,
|
| 1278 |
+
dist=None,
|
| 1279 |
+
target=None,
|
| 1280 |
+
heuristic=True,
|
| 1281 |
+
):
|
| 1282 |
+
"""Calls relaxation loop for Bellman–Ford algorithm and builds paths
|
| 1283 |
+
|
| 1284 |
+
This is an implementation of the SPFA variant.
|
| 1285 |
+
See https://en.wikipedia.org/wiki/Shortest_Path_Faster_Algorithm
|
| 1286 |
+
|
| 1287 |
+
Parameters
|
| 1288 |
+
----------
|
| 1289 |
+
G : NetworkX graph
|
| 1290 |
+
|
| 1291 |
+
source: list
|
| 1292 |
+
List of source nodes. The shortest path from any of the source
|
| 1293 |
+
nodes will be found if multiple sources are provided.
|
| 1294 |
+
|
| 1295 |
+
weight : function
|
| 1296 |
+
The weight of an edge is the value returned by the function. The
|
| 1297 |
+
function must accept exactly three positional arguments: the two
|
| 1298 |
+
endpoints of an edge and the dictionary of edge attributes for
|
| 1299 |
+
that edge. The function must return a number.
|
| 1300 |
+
|
| 1301 |
+
pred: dict of lists, optional (default=None)
|
| 1302 |
+
dict to store a list of predecessors keyed by that node
|
| 1303 |
+
If None, predecessors are not stored
|
| 1304 |
+
|
| 1305 |
+
paths: dict, optional (default=None)
|
| 1306 |
+
dict to store the path list from source to each node, keyed by node
|
| 1307 |
+
If None, paths are not stored
|
| 1308 |
+
|
| 1309 |
+
dist: dict, optional (default=None)
|
| 1310 |
+
dict to store distance from source to the keyed node
|
| 1311 |
+
If None, returned dist dict contents default to 0 for every node in the
|
| 1312 |
+
source list
|
| 1313 |
+
|
| 1314 |
+
target: node label, optional
|
| 1315 |
+
Ending node for path. Path lengths to other destinations may (and
|
| 1316 |
+
probably will) be incorrect.
|
| 1317 |
+
|
| 1318 |
+
heuristic : bool
|
| 1319 |
+
Determines whether to use a heuristic to early detect negative
|
| 1320 |
+
cycles at a hopefully negligible cost.
|
| 1321 |
+
|
| 1322 |
+
Returns
|
| 1323 |
+
-------
|
| 1324 |
+
dist : dict
|
| 1325 |
+
Returns a dict keyed by node to the distance from the source.
|
| 1326 |
+
Dicts for paths and pred are in the mutated input dicts by those names.
|
| 1327 |
+
|
| 1328 |
+
Raises
|
| 1329 |
+
------
|
| 1330 |
+
NodeNotFound
|
| 1331 |
+
If any of `source` is not in `G`.
|
| 1332 |
+
|
| 1333 |
+
NetworkXUnbounded
|
| 1334 |
+
If the (di)graph contains a negative (di)cycle, the
|
| 1335 |
+
algorithm raises an exception to indicate the presence of the
|
| 1336 |
+
negative (di)cycle. Note: any negative weight edge in an
|
| 1337 |
+
undirected graph is a negative cycle
|
| 1338 |
+
"""
|
| 1339 |
+
if pred is None:
|
| 1340 |
+
pred = {v: [] for v in source}
|
| 1341 |
+
|
| 1342 |
+
if dist is None:
|
| 1343 |
+
dist = {v: 0 for v in source}
|
| 1344 |
+
|
| 1345 |
+
negative_cycle_found = _inner_bellman_ford(
|
| 1346 |
+
G,
|
| 1347 |
+
source,
|
| 1348 |
+
weight,
|
| 1349 |
+
pred,
|
| 1350 |
+
dist,
|
| 1351 |
+
heuristic,
|
| 1352 |
+
)
|
| 1353 |
+
if negative_cycle_found is not None:
|
| 1354 |
+
raise nx.NetworkXUnbounded("Negative cycle detected.")
|
| 1355 |
+
|
| 1356 |
+
if paths is not None:
|
| 1357 |
+
sources = set(source)
|
| 1358 |
+
dsts = [target] if target is not None else pred
|
| 1359 |
+
for dst in dsts:
|
| 1360 |
+
gen = _build_paths_from_predecessors(sources, dst, pred)
|
| 1361 |
+
paths[dst] = next(gen)
|
| 1362 |
+
|
| 1363 |
+
return dist
|
| 1364 |
+
|
| 1365 |
+
|
| 1366 |
+
def _inner_bellman_ford(
|
| 1367 |
+
G,
|
| 1368 |
+
sources,
|
| 1369 |
+
weight,
|
| 1370 |
+
pred,
|
| 1371 |
+
dist=None,
|
| 1372 |
+
heuristic=True,
|
| 1373 |
+
):
|
| 1374 |
+
"""Inner Relaxation loop for Bellman–Ford algorithm.
|
| 1375 |
+
|
| 1376 |
+
This is an implementation of the SPFA variant.
|
| 1377 |
+
See https://en.wikipedia.org/wiki/Shortest_Path_Faster_Algorithm
|
| 1378 |
+
|
| 1379 |
+
Parameters
|
| 1380 |
+
----------
|
| 1381 |
+
G : NetworkX graph
|
| 1382 |
+
|
| 1383 |
+
source: list
|
| 1384 |
+
List of source nodes. The shortest path from any of the source
|
| 1385 |
+
nodes will be found if multiple sources are provided.
|
| 1386 |
+
|
| 1387 |
+
weight : function
|
| 1388 |
+
The weight of an edge is the value returned by the function. The
|
| 1389 |
+
function must accept exactly three positional arguments: the two
|
| 1390 |
+
endpoints of an edge and the dictionary of edge attributes for
|
| 1391 |
+
that edge. The function must return a number.
|
| 1392 |
+
|
| 1393 |
+
pred: dict of lists
|
| 1394 |
+
dict to store a list of predecessors keyed by that node
|
| 1395 |
+
|
| 1396 |
+
dist: dict, optional (default=None)
|
| 1397 |
+
dict to store distance from source to the keyed node
|
| 1398 |
+
If None, returned dist dict contents default to 0 for every node in the
|
| 1399 |
+
source list
|
| 1400 |
+
|
| 1401 |
+
heuristic : bool
|
| 1402 |
+
Determines whether to use a heuristic to early detect negative
|
| 1403 |
+
cycles at a hopefully negligible cost.
|
| 1404 |
+
|
| 1405 |
+
Returns
|
| 1406 |
+
-------
|
| 1407 |
+
node or None
|
| 1408 |
+
Return a node `v` where processing discovered a negative cycle.
|
| 1409 |
+
If no negative cycle found, return None.
|
| 1410 |
+
|
| 1411 |
+
Raises
|
| 1412 |
+
------
|
| 1413 |
+
NodeNotFound
|
| 1414 |
+
If any of `source` is not in `G`.
|
| 1415 |
+
"""
|
| 1416 |
+
for s in sources:
|
| 1417 |
+
if s not in G:
|
| 1418 |
+
raise nx.NodeNotFound(f"Source {s} not in G")
|
| 1419 |
+
|
| 1420 |
+
if pred is None:
|
| 1421 |
+
pred = {v: [] for v in sources}
|
| 1422 |
+
|
| 1423 |
+
if dist is None:
|
| 1424 |
+
dist = {v: 0 for v in sources}
|
| 1425 |
+
|
| 1426 |
+
# Heuristic Storage setup. Note: use None because nodes cannot be None
|
| 1427 |
+
nonexistent_edge = (None, None)
|
| 1428 |
+
pred_edge = {v: None for v in sources}
|
| 1429 |
+
recent_update = {v: nonexistent_edge for v in sources}
|
| 1430 |
+
|
| 1431 |
+
G_succ = G._adj # For speed-up (and works for both directed and undirected graphs)
|
| 1432 |
+
inf = float("inf")
|
| 1433 |
+
n = len(G)
|
| 1434 |
+
|
| 1435 |
+
count = {}
|
| 1436 |
+
q = deque(sources)
|
| 1437 |
+
in_q = set(sources)
|
| 1438 |
+
while q:
|
| 1439 |
+
u = q.popleft()
|
| 1440 |
+
in_q.remove(u)
|
| 1441 |
+
|
| 1442 |
+
# Skip relaxations if any of the predecessors of u is in the queue.
|
| 1443 |
+
if all(pred_u not in in_q for pred_u in pred[u]):
|
| 1444 |
+
dist_u = dist[u]
|
| 1445 |
+
for v, e in G_succ[u].items():
|
| 1446 |
+
dist_v = dist_u + weight(u, v, e)
|
| 1447 |
+
|
| 1448 |
+
if dist_v < dist.get(v, inf):
|
| 1449 |
+
# In this conditional branch we are updating the path with v.
|
| 1450 |
+
# If it happens that some earlier update also added node v
|
| 1451 |
+
# that implies the existence of a negative cycle since
|
| 1452 |
+
# after the update node v would lie on the update path twice.
|
| 1453 |
+
# The update path is stored up to one of the source nodes,
|
| 1454 |
+
# therefore u is always in the dict recent_update
|
| 1455 |
+
if heuristic:
|
| 1456 |
+
if v in recent_update[u]:
|
| 1457 |
+
# Negative cycle found!
|
| 1458 |
+
pred[v].append(u)
|
| 1459 |
+
return v
|
| 1460 |
+
|
| 1461 |
+
# Transfer the recent update info from u to v if the
|
| 1462 |
+
# same source node is the head of the update path.
|
| 1463 |
+
# If the source node is responsible for the cost update,
|
| 1464 |
+
# then clear the history and use it instead.
|
| 1465 |
+
if v in pred_edge and pred_edge[v] == u:
|
| 1466 |
+
recent_update[v] = recent_update[u]
|
| 1467 |
+
else:
|
| 1468 |
+
recent_update[v] = (u, v)
|
| 1469 |
+
|
| 1470 |
+
if v not in in_q:
|
| 1471 |
+
q.append(v)
|
| 1472 |
+
in_q.add(v)
|
| 1473 |
+
count_v = count.get(v, 0) + 1
|
| 1474 |
+
if count_v == n:
|
| 1475 |
+
# Negative cycle found!
|
| 1476 |
+
return v
|
| 1477 |
+
|
| 1478 |
+
count[v] = count_v
|
| 1479 |
+
dist[v] = dist_v
|
| 1480 |
+
pred[v] = [u]
|
| 1481 |
+
pred_edge[v] = u
|
| 1482 |
+
|
| 1483 |
+
elif dist.get(v) is not None and dist_v == dist.get(v):
|
| 1484 |
+
pred[v].append(u)
|
| 1485 |
+
|
| 1486 |
+
# successfully found shortest_path. No negative cycles found.
|
| 1487 |
+
return None
|
| 1488 |
+
|
| 1489 |
+
|
| 1490 |
+
@nx._dispatchable(edge_attrs="weight")
|
| 1491 |
+
def bellman_ford_path(G, source, target, weight="weight"):
|
| 1492 |
+
"""Returns the shortest path from source to target in a weighted graph G.
|
| 1493 |
+
|
| 1494 |
+
Parameters
|
| 1495 |
+
----------
|
| 1496 |
+
G : NetworkX graph
|
| 1497 |
+
|
| 1498 |
+
source : node
|
| 1499 |
+
Starting node
|
| 1500 |
+
|
| 1501 |
+
target : node
|
| 1502 |
+
Ending node
|
| 1503 |
+
|
| 1504 |
+
weight : string or function (default="weight")
|
| 1505 |
+
If this is a string, then edge weights will be accessed via the
|
| 1506 |
+
edge attribute with this key (that is, the weight of the edge
|
| 1507 |
+
joining `u` to `v` will be ``G.edges[u, v][weight]``). If no
|
| 1508 |
+
such edge attribute exists, the weight of the edge is assumed to
|
| 1509 |
+
be one.
|
| 1510 |
+
|
| 1511 |
+
If this is a function, the weight of an edge is the value
|
| 1512 |
+
returned by the function. The function must accept exactly three
|
| 1513 |
+
positional arguments: the two endpoints of an edge and the
|
| 1514 |
+
dictionary of edge attributes for that edge. The function must
|
| 1515 |
+
return a number.
|
| 1516 |
+
|
| 1517 |
+
Returns
|
| 1518 |
+
-------
|
| 1519 |
+
path : list
|
| 1520 |
+
List of nodes in a shortest path.
|
| 1521 |
+
|
| 1522 |
+
Raises
|
| 1523 |
+
------
|
| 1524 |
+
NodeNotFound
|
| 1525 |
+
If `source` is not in `G`.
|
| 1526 |
+
|
| 1527 |
+
NetworkXNoPath
|
| 1528 |
+
If no path exists between source and target.
|
| 1529 |
+
|
| 1530 |
+
Examples
|
| 1531 |
+
--------
|
| 1532 |
+
>>> G = nx.path_graph(5)
|
| 1533 |
+
>>> nx.bellman_ford_path(G, 0, 4)
|
| 1534 |
+
[0, 1, 2, 3, 4]
|
| 1535 |
+
|
| 1536 |
+
Notes
|
| 1537 |
+
-----
|
| 1538 |
+
Edge weight attributes must be numerical.
|
| 1539 |
+
Distances are calculated as sums of weighted edges traversed.
|
| 1540 |
+
|
| 1541 |
+
See Also
|
| 1542 |
+
--------
|
| 1543 |
+
dijkstra_path, bellman_ford_path_length
|
| 1544 |
+
"""
|
| 1545 |
+
length, path = single_source_bellman_ford(G, source, target=target, weight=weight)
|
| 1546 |
+
return path
|
| 1547 |
+
|
| 1548 |
+
|
| 1549 |
+
@nx._dispatchable(edge_attrs="weight")
|
| 1550 |
+
def bellman_ford_path_length(G, source, target, weight="weight"):
|
| 1551 |
+
"""Returns the shortest path length from source to target
|
| 1552 |
+
in a weighted graph.
|
| 1553 |
+
|
| 1554 |
+
Parameters
|
| 1555 |
+
----------
|
| 1556 |
+
G : NetworkX graph
|
| 1557 |
+
|
| 1558 |
+
source : node label
|
| 1559 |
+
starting node for path
|
| 1560 |
+
|
| 1561 |
+
target : node label
|
| 1562 |
+
ending node for path
|
| 1563 |
+
|
| 1564 |
+
weight : string or function (default="weight")
|
| 1565 |
+
If this is a string, then edge weights will be accessed via the
|
| 1566 |
+
edge attribute with this key (that is, the weight of the edge
|
| 1567 |
+
joining `u` to `v` will be ``G.edges[u, v][weight]``). If no
|
| 1568 |
+
such edge attribute exists, the weight of the edge is assumed to
|
| 1569 |
+
be one.
|
| 1570 |
+
|
| 1571 |
+
If this is a function, the weight of an edge is the value
|
| 1572 |
+
returned by the function. The function must accept exactly three
|
| 1573 |
+
positional arguments: the two endpoints of an edge and the
|
| 1574 |
+
dictionary of edge attributes for that edge. The function must
|
| 1575 |
+
return a number.
|
| 1576 |
+
|
| 1577 |
+
Returns
|
| 1578 |
+
-------
|
| 1579 |
+
length : number
|
| 1580 |
+
Shortest path length.
|
| 1581 |
+
|
| 1582 |
+
Raises
|
| 1583 |
+
------
|
| 1584 |
+
NodeNotFound
|
| 1585 |
+
If `source` is not in `G`.
|
| 1586 |
+
|
| 1587 |
+
NetworkXNoPath
|
| 1588 |
+
If no path exists between source and target.
|
| 1589 |
+
|
| 1590 |
+
Examples
|
| 1591 |
+
--------
|
| 1592 |
+
>>> G = nx.path_graph(5)
|
| 1593 |
+
>>> nx.bellman_ford_path_length(G, 0, 4)
|
| 1594 |
+
4
|
| 1595 |
+
|
| 1596 |
+
Notes
|
| 1597 |
+
-----
|
| 1598 |
+
Edge weight attributes must be numerical.
|
| 1599 |
+
Distances are calculated as sums of weighted edges traversed.
|
| 1600 |
+
|
| 1601 |
+
See Also
|
| 1602 |
+
--------
|
| 1603 |
+
dijkstra_path_length, bellman_ford_path
|
| 1604 |
+
"""
|
| 1605 |
+
if source == target:
|
| 1606 |
+
if source not in G:
|
| 1607 |
+
raise nx.NodeNotFound(f"Node {source} not found in graph")
|
| 1608 |
+
return 0
|
| 1609 |
+
|
| 1610 |
+
weight = _weight_function(G, weight)
|
| 1611 |
+
|
| 1612 |
+
length = _bellman_ford(G, [source], weight, target=target)
|
| 1613 |
+
|
| 1614 |
+
try:
|
| 1615 |
+
return length[target]
|
| 1616 |
+
except KeyError as err:
|
| 1617 |
+
raise nx.NetworkXNoPath(f"node {target} not reachable from {source}") from err
|
| 1618 |
+
|
| 1619 |
+
|
| 1620 |
+
@nx._dispatchable(edge_attrs="weight")
|
| 1621 |
+
def single_source_bellman_ford_path(G, source, weight="weight"):
|
| 1622 |
+
"""Compute shortest path between source and all other reachable
|
| 1623 |
+
nodes for a weighted graph.
|
| 1624 |
+
|
| 1625 |
+
Parameters
|
| 1626 |
+
----------
|
| 1627 |
+
G : NetworkX graph
|
| 1628 |
+
|
| 1629 |
+
source : node
|
| 1630 |
+
Starting node for path.
|
| 1631 |
+
|
| 1632 |
+
weight : string or function (default="weight")
|
| 1633 |
+
If this is a string, then edge weights will be accessed via the
|
| 1634 |
+
edge attribute with this key (that is, the weight of the edge
|
| 1635 |
+
joining `u` to `v` will be ``G.edges[u, v][weight]``). If no
|
| 1636 |
+
such edge attribute exists, the weight of the edge is assumed to
|
| 1637 |
+
be one.
|
| 1638 |
+
|
| 1639 |
+
If this is a function, the weight of an edge is the value
|
| 1640 |
+
returned by the function. The function must accept exactly three
|
| 1641 |
+
positional arguments: the two endpoints of an edge and the
|
| 1642 |
+
dictionary of edge attributes for that edge. The function must
|
| 1643 |
+
return a number.
|
| 1644 |
+
|
| 1645 |
+
Returns
|
| 1646 |
+
-------
|
| 1647 |
+
paths : dictionary
|
| 1648 |
+
Dictionary of shortest path lengths keyed by target.
|
| 1649 |
+
|
| 1650 |
+
Raises
|
| 1651 |
+
------
|
| 1652 |
+
NodeNotFound
|
| 1653 |
+
If `source` is not in `G`.
|
| 1654 |
+
|
| 1655 |
+
Examples
|
| 1656 |
+
--------
|
| 1657 |
+
>>> G = nx.path_graph(5)
|
| 1658 |
+
>>> path = nx.single_source_bellman_ford_path(G, 0)
|
| 1659 |
+
>>> path[4]
|
| 1660 |
+
[0, 1, 2, 3, 4]
|
| 1661 |
+
|
| 1662 |
+
Notes
|
| 1663 |
+
-----
|
| 1664 |
+
Edge weight attributes must be numerical.
|
| 1665 |
+
Distances are calculated as sums of weighted edges traversed.
|
| 1666 |
+
|
| 1667 |
+
See Also
|
| 1668 |
+
--------
|
| 1669 |
+
single_source_dijkstra, single_source_bellman_ford
|
| 1670 |
+
|
| 1671 |
+
"""
|
| 1672 |
+
(length, path) = single_source_bellman_ford(G, source, weight=weight)
|
| 1673 |
+
return path
|
| 1674 |
+
|
| 1675 |
+
|
| 1676 |
+
@nx._dispatchable(edge_attrs="weight")
|
| 1677 |
+
def single_source_bellman_ford_path_length(G, source, weight="weight"):
|
| 1678 |
+
"""Compute the shortest path length between source and all other
|
| 1679 |
+
reachable nodes for a weighted graph.
|
| 1680 |
+
|
| 1681 |
+
Parameters
|
| 1682 |
+
----------
|
| 1683 |
+
G : NetworkX graph
|
| 1684 |
+
|
| 1685 |
+
source : node label
|
| 1686 |
+
Starting node for path
|
| 1687 |
+
|
| 1688 |
+
weight : string or function (default="weight")
|
| 1689 |
+
If this is a string, then edge weights will be accessed via the
|
| 1690 |
+
edge attribute with this key (that is, the weight of the edge
|
| 1691 |
+
joining `u` to `v` will be ``G.edges[u, v][weight]``). If no
|
| 1692 |
+
such edge attribute exists, the weight of the edge is assumed to
|
| 1693 |
+
be one.
|
| 1694 |
+
|
| 1695 |
+
If this is a function, the weight of an edge is the value
|
| 1696 |
+
returned by the function. The function must accept exactly three
|
| 1697 |
+
positional arguments: the two endpoints of an edge and the
|
| 1698 |
+
dictionary of edge attributes for that edge. The function must
|
| 1699 |
+
return a number.
|
| 1700 |
+
|
| 1701 |
+
Returns
|
| 1702 |
+
-------
|
| 1703 |
+
length : dictionary
|
| 1704 |
+
Dictionary of shortest path length keyed by target
|
| 1705 |
+
|
| 1706 |
+
Raises
|
| 1707 |
+
------
|
| 1708 |
+
NodeNotFound
|
| 1709 |
+
If `source` is not in `G`.
|
| 1710 |
+
|
| 1711 |
+
Examples
|
| 1712 |
+
--------
|
| 1713 |
+
>>> G = nx.path_graph(5)
|
| 1714 |
+
>>> length = nx.single_source_bellman_ford_path_length(G, 0)
|
| 1715 |
+
>>> length[4]
|
| 1716 |
+
4
|
| 1717 |
+
>>> for node in [0, 1, 2, 3, 4]:
|
| 1718 |
+
... print(f"{node}: {length[node]}")
|
| 1719 |
+
0: 0
|
| 1720 |
+
1: 1
|
| 1721 |
+
2: 2
|
| 1722 |
+
3: 3
|
| 1723 |
+
4: 4
|
| 1724 |
+
|
| 1725 |
+
Notes
|
| 1726 |
+
-----
|
| 1727 |
+
Edge weight attributes must be numerical.
|
| 1728 |
+
Distances are calculated as sums of weighted edges traversed.
|
| 1729 |
+
|
| 1730 |
+
See Also
|
| 1731 |
+
--------
|
| 1732 |
+
single_source_dijkstra, single_source_bellman_ford
|
| 1733 |
+
|
| 1734 |
+
"""
|
| 1735 |
+
weight = _weight_function(G, weight)
|
| 1736 |
+
return _bellman_ford(G, [source], weight)
|
| 1737 |
+
|
| 1738 |
+
|
| 1739 |
+
@nx._dispatchable(edge_attrs="weight")
|
| 1740 |
+
def single_source_bellman_ford(G, source, target=None, weight="weight"):
|
| 1741 |
+
"""Compute shortest paths and lengths in a weighted graph G.
|
| 1742 |
+
|
| 1743 |
+
Uses Bellman-Ford algorithm for shortest paths.
|
| 1744 |
+
|
| 1745 |
+
Parameters
|
| 1746 |
+
----------
|
| 1747 |
+
G : NetworkX graph
|
| 1748 |
+
|
| 1749 |
+
source : node label
|
| 1750 |
+
Starting node for path
|
| 1751 |
+
|
| 1752 |
+
target : node label, optional
|
| 1753 |
+
Ending node for path
|
| 1754 |
+
|
| 1755 |
+
weight : string or function
|
| 1756 |
+
If this is a string, then edge weights will be accessed via the
|
| 1757 |
+
edge attribute with this key (that is, the weight of the edge
|
| 1758 |
+
joining `u` to `v` will be ``G.edges[u, v][weight]``). If no
|
| 1759 |
+
such edge attribute exists, the weight of the edge is assumed to
|
| 1760 |
+
be one.
|
| 1761 |
+
|
| 1762 |
+
If this is a function, the weight of an edge is the value
|
| 1763 |
+
returned by the function. The function must accept exactly three
|
| 1764 |
+
positional arguments: the two endpoints of an edge and the
|
| 1765 |
+
dictionary of edge attributes for that edge. The function must
|
| 1766 |
+
return a number.
|
| 1767 |
+
|
| 1768 |
+
Returns
|
| 1769 |
+
-------
|
| 1770 |
+
distance, path : pair of dictionaries, or numeric and list
|
| 1771 |
+
If target is None, returns a tuple of two dictionaries keyed by node.
|
| 1772 |
+
The first dictionary stores distance from one of the source nodes.
|
| 1773 |
+
The second stores the path from one of the sources to that node.
|
| 1774 |
+
If target is not None, returns a tuple of (distance, path) where
|
| 1775 |
+
distance is the distance from source to target and path is a list
|
| 1776 |
+
representing the path from source to target.
|
| 1777 |
+
|
| 1778 |
+
Raises
|
| 1779 |
+
------
|
| 1780 |
+
NodeNotFound
|
| 1781 |
+
If `source` is not in `G`.
|
| 1782 |
+
|
| 1783 |
+
Examples
|
| 1784 |
+
--------
|
| 1785 |
+
>>> G = nx.path_graph(5)
|
| 1786 |
+
>>> length, path = nx.single_source_bellman_ford(G, 0)
|
| 1787 |
+
>>> length[4]
|
| 1788 |
+
4
|
| 1789 |
+
>>> for node in [0, 1, 2, 3, 4]:
|
| 1790 |
+
... print(f"{node}: {length[node]}")
|
| 1791 |
+
0: 0
|
| 1792 |
+
1: 1
|
| 1793 |
+
2: 2
|
| 1794 |
+
3: 3
|
| 1795 |
+
4: 4
|
| 1796 |
+
>>> path[4]
|
| 1797 |
+
[0, 1, 2, 3, 4]
|
| 1798 |
+
>>> length, path = nx.single_source_bellman_ford(G, 0, 1)
|
| 1799 |
+
>>> length
|
| 1800 |
+
1
|
| 1801 |
+
>>> path
|
| 1802 |
+
[0, 1]
|
| 1803 |
+
|
| 1804 |
+
Notes
|
| 1805 |
+
-----
|
| 1806 |
+
Edge weight attributes must be numerical.
|
| 1807 |
+
Distances are calculated as sums of weighted edges traversed.
|
| 1808 |
+
|
| 1809 |
+
See Also
|
| 1810 |
+
--------
|
| 1811 |
+
single_source_dijkstra
|
| 1812 |
+
single_source_bellman_ford_path
|
| 1813 |
+
single_source_bellman_ford_path_length
|
| 1814 |
+
"""
|
| 1815 |
+
if source == target:
|
| 1816 |
+
if source not in G:
|
| 1817 |
+
raise nx.NodeNotFound(f"Node {source} is not found in the graph")
|
| 1818 |
+
return (0, [source])
|
| 1819 |
+
|
| 1820 |
+
weight = _weight_function(G, weight)
|
| 1821 |
+
|
| 1822 |
+
paths = {source: [source]} # dictionary of paths
|
| 1823 |
+
dist = _bellman_ford(G, [source], weight, paths=paths, target=target)
|
| 1824 |
+
if target is None:
|
| 1825 |
+
return (dist, paths)
|
| 1826 |
+
try:
|
| 1827 |
+
return (dist[target], paths[target])
|
| 1828 |
+
except KeyError as err:
|
| 1829 |
+
msg = f"Node {target} not reachable from {source}"
|
| 1830 |
+
raise nx.NetworkXNoPath(msg) from err
|
| 1831 |
+
|
| 1832 |
+
|
| 1833 |
+
@nx._dispatchable(edge_attrs="weight")
|
| 1834 |
+
def all_pairs_bellman_ford_path_length(G, weight="weight"):
|
| 1835 |
+
"""Compute shortest path lengths between all nodes in a weighted graph.
|
| 1836 |
+
|
| 1837 |
+
Parameters
|
| 1838 |
+
----------
|
| 1839 |
+
G : NetworkX graph
|
| 1840 |
+
|
| 1841 |
+
weight : string or function (default="weight")
|
| 1842 |
+
If this is a string, then edge weights will be accessed via the
|
| 1843 |
+
edge attribute with this key (that is, the weight of the edge
|
| 1844 |
+
joining `u` to `v` will be ``G.edges[u, v][weight]``). If no
|
| 1845 |
+
such edge attribute exists, the weight of the edge is assumed to
|
| 1846 |
+
be one.
|
| 1847 |
+
|
| 1848 |
+
If this is a function, the weight of an edge is the value
|
| 1849 |
+
returned by the function. The function must accept exactly three
|
| 1850 |
+
positional arguments: the two endpoints of an edge and the
|
| 1851 |
+
dictionary of edge attributes for that edge. The function must
|
| 1852 |
+
return a number.
|
| 1853 |
+
|
| 1854 |
+
Returns
|
| 1855 |
+
-------
|
| 1856 |
+
distance : iterator
|
| 1857 |
+
(source, dictionary) iterator with dictionary keyed by target and
|
| 1858 |
+
shortest path length as the key value.
|
| 1859 |
+
|
| 1860 |
+
Examples
|
| 1861 |
+
--------
|
| 1862 |
+
>>> G = nx.path_graph(5)
|
| 1863 |
+
>>> length = dict(nx.all_pairs_bellman_ford_path_length(G))
|
| 1864 |
+
>>> for node in [0, 1, 2, 3, 4]:
|
| 1865 |
+
... print(f"1 - {node}: {length[1][node]}")
|
| 1866 |
+
1 - 0: 1
|
| 1867 |
+
1 - 1: 0
|
| 1868 |
+
1 - 2: 1
|
| 1869 |
+
1 - 3: 2
|
| 1870 |
+
1 - 4: 3
|
| 1871 |
+
>>> length[3][2]
|
| 1872 |
+
1
|
| 1873 |
+
>>> length[2][2]
|
| 1874 |
+
0
|
| 1875 |
+
|
| 1876 |
+
Notes
|
| 1877 |
+
-----
|
| 1878 |
+
Edge weight attributes must be numerical.
|
| 1879 |
+
Distances are calculated as sums of weighted edges traversed.
|
| 1880 |
+
|
| 1881 |
+
The dictionary returned only has keys for reachable node pairs.
|
| 1882 |
+
"""
|
| 1883 |
+
length = single_source_bellman_ford_path_length
|
| 1884 |
+
for n in G:
|
| 1885 |
+
yield (n, dict(length(G, n, weight=weight)))
|
| 1886 |
+
|
| 1887 |
+
|
| 1888 |
+
@nx._dispatchable(edge_attrs="weight")
|
| 1889 |
+
def all_pairs_bellman_ford_path(G, weight="weight"):
|
| 1890 |
+
"""Compute shortest paths between all nodes in a weighted graph.
|
| 1891 |
+
|
| 1892 |
+
Parameters
|
| 1893 |
+
----------
|
| 1894 |
+
G : NetworkX graph
|
| 1895 |
+
|
| 1896 |
+
weight : string or function (default="weight")
|
| 1897 |
+
If this is a string, then edge weights will be accessed via the
|
| 1898 |
+
edge attribute with this key (that is, the weight of the edge
|
| 1899 |
+
joining `u` to `v` will be ``G.edges[u, v][weight]``). If no
|
| 1900 |
+
such edge attribute exists, the weight of the edge is assumed to
|
| 1901 |
+
be one.
|
| 1902 |
+
|
| 1903 |
+
If this is a function, the weight of an edge is the value
|
| 1904 |
+
returned by the function. The function must accept exactly three
|
| 1905 |
+
positional arguments: the two endpoints of an edge and the
|
| 1906 |
+
dictionary of edge attributes for that edge. The function must
|
| 1907 |
+
return a number.
|
| 1908 |
+
|
| 1909 |
+
Returns
|
| 1910 |
+
-------
|
| 1911 |
+
paths : iterator
|
| 1912 |
+
(source, dictionary) iterator with dictionary keyed by target and
|
| 1913 |
+
shortest path as the key value.
|
| 1914 |
+
|
| 1915 |
+
Examples
|
| 1916 |
+
--------
|
| 1917 |
+
>>> G = nx.path_graph(5)
|
| 1918 |
+
>>> path = dict(nx.all_pairs_bellman_ford_path(G))
|
| 1919 |
+
>>> path[0][4]
|
| 1920 |
+
[0, 1, 2, 3, 4]
|
| 1921 |
+
|
| 1922 |
+
Notes
|
| 1923 |
+
-----
|
| 1924 |
+
Edge weight attributes must be numerical.
|
| 1925 |
+
Distances are calculated as sums of weighted edges traversed.
|
| 1926 |
+
|
| 1927 |
+
See Also
|
| 1928 |
+
--------
|
| 1929 |
+
floyd_warshall, all_pairs_dijkstra_path
|
| 1930 |
+
|
| 1931 |
+
"""
|
| 1932 |
+
path = single_source_bellman_ford_path
|
| 1933 |
+
for n in G:
|
| 1934 |
+
yield (n, path(G, n, weight=weight))
|
| 1935 |
+
|
| 1936 |
+
|
| 1937 |
+
@nx._dispatchable(edge_attrs="weight")
|
| 1938 |
+
def goldberg_radzik(G, source, weight="weight"):
|
| 1939 |
+
"""Compute shortest path lengths and predecessors on shortest paths
|
| 1940 |
+
in weighted graphs.
|
| 1941 |
+
|
| 1942 |
+
The algorithm has a running time of $O(mn)$ where $n$ is the number of
|
| 1943 |
+
nodes and $m$ is the number of edges. It is slower than Dijkstra but
|
| 1944 |
+
can handle negative edge weights.
|
| 1945 |
+
|
| 1946 |
+
Parameters
|
| 1947 |
+
----------
|
| 1948 |
+
G : NetworkX graph
|
| 1949 |
+
The algorithm works for all types of graphs, including directed
|
| 1950 |
+
graphs and multigraphs.
|
| 1951 |
+
|
| 1952 |
+
source: node label
|
| 1953 |
+
Starting node for path
|
| 1954 |
+
|
| 1955 |
+
weight : string or function
|
| 1956 |
+
If this is a string, then edge weights will be accessed via the
|
| 1957 |
+
edge attribute with this key (that is, the weight of the edge
|
| 1958 |
+
joining `u` to `v` will be ``G.edges[u, v][weight]``). If no
|
| 1959 |
+
such edge attribute exists, the weight of the edge is assumed to
|
| 1960 |
+
be one.
|
| 1961 |
+
|
| 1962 |
+
If this is a function, the weight of an edge is the value
|
| 1963 |
+
returned by the function. The function must accept exactly three
|
| 1964 |
+
positional arguments: the two endpoints of an edge and the
|
| 1965 |
+
dictionary of edge attributes for that edge. The function must
|
| 1966 |
+
return a number.
|
| 1967 |
+
|
| 1968 |
+
Returns
|
| 1969 |
+
-------
|
| 1970 |
+
pred, dist : dictionaries
|
| 1971 |
+
Returns two dictionaries keyed by node to predecessor in the
|
| 1972 |
+
path and to the distance from the source respectively.
|
| 1973 |
+
|
| 1974 |
+
Raises
|
| 1975 |
+
------
|
| 1976 |
+
NodeNotFound
|
| 1977 |
+
If `source` is not in `G`.
|
| 1978 |
+
|
| 1979 |
+
NetworkXUnbounded
|
| 1980 |
+
If the (di)graph contains a negative (di)cycle, the
|
| 1981 |
+
algorithm raises an exception to indicate the presence of the
|
| 1982 |
+
negative (di)cycle. Note: any negative weight edge in an
|
| 1983 |
+
undirected graph is a negative cycle.
|
| 1984 |
+
|
| 1985 |
+
As of NetworkX v3.2, a zero weight cycle is no longer
|
| 1986 |
+
incorrectly reported as a negative weight cycle.
|
| 1987 |
+
|
| 1988 |
+
|
| 1989 |
+
Examples
|
| 1990 |
+
--------
|
| 1991 |
+
>>> G = nx.path_graph(5, create_using=nx.DiGraph())
|
| 1992 |
+
>>> pred, dist = nx.goldberg_radzik(G, 0)
|
| 1993 |
+
>>> sorted(pred.items())
|
| 1994 |
+
[(0, None), (1, 0), (2, 1), (3, 2), (4, 3)]
|
| 1995 |
+
>>> sorted(dist.items())
|
| 1996 |
+
[(0, 0), (1, 1), (2, 2), (3, 3), (4, 4)]
|
| 1997 |
+
|
| 1998 |
+
>>> G = nx.cycle_graph(5, create_using=nx.DiGraph())
|
| 1999 |
+
>>> G[1][2]["weight"] = -7
|
| 2000 |
+
>>> nx.goldberg_radzik(G, 0)
|
| 2001 |
+
Traceback (most recent call last):
|
| 2002 |
+
...
|
| 2003 |
+
networkx.exception.NetworkXUnbounded: Negative cycle detected.
|
| 2004 |
+
|
| 2005 |
+
Notes
|
| 2006 |
+
-----
|
| 2007 |
+
Edge weight attributes must be numerical.
|
| 2008 |
+
Distances are calculated as sums of weighted edges traversed.
|
| 2009 |
+
|
| 2010 |
+
The dictionaries returned only have keys for nodes reachable from
|
| 2011 |
+
the source.
|
| 2012 |
+
|
| 2013 |
+
In the case where the (di)graph is not connected, if a component
|
| 2014 |
+
not containing the source contains a negative (di)cycle, it
|
| 2015 |
+
will not be detected.
|
| 2016 |
+
|
| 2017 |
+
"""
|
| 2018 |
+
if source not in G:
|
| 2019 |
+
raise nx.NodeNotFound(f"Node {source} is not found in the graph")
|
| 2020 |
+
weight = _weight_function(G, weight)
|
| 2021 |
+
if G.is_multigraph():
|
| 2022 |
+
if any(
|
| 2023 |
+
weight(u, v, {k: d}) < 0
|
| 2024 |
+
for u, v, k, d in nx.selfloop_edges(G, keys=True, data=True)
|
| 2025 |
+
):
|
| 2026 |
+
raise nx.NetworkXUnbounded("Negative cycle detected.")
|
| 2027 |
+
else:
|
| 2028 |
+
if any(weight(u, v, d) < 0 for u, v, d in nx.selfloop_edges(G, data=True)):
|
| 2029 |
+
raise nx.NetworkXUnbounded("Negative cycle detected.")
|
| 2030 |
+
|
| 2031 |
+
if len(G) == 1:
|
| 2032 |
+
return {source: None}, {source: 0}
|
| 2033 |
+
|
| 2034 |
+
G_succ = G._adj # For speed-up (and works for both directed and undirected graphs)
|
| 2035 |
+
|
| 2036 |
+
inf = float("inf")
|
| 2037 |
+
d = {u: inf for u in G}
|
| 2038 |
+
d[source] = 0
|
| 2039 |
+
pred = {source: None}
|
| 2040 |
+
|
| 2041 |
+
def topo_sort(relabeled):
|
| 2042 |
+
"""Topologically sort nodes relabeled in the previous round and detect
|
| 2043 |
+
negative cycles.
|
| 2044 |
+
"""
|
| 2045 |
+
# List of nodes to scan in this round. Denoted by A in Goldberg and
|
| 2046 |
+
# Radzik's paper.
|
| 2047 |
+
to_scan = []
|
| 2048 |
+
# In the DFS in the loop below, neg_count records for each node the
|
| 2049 |
+
# number of edges of negative reduced costs on the path from a DFS root
|
| 2050 |
+
# to the node in the DFS forest. The reduced cost of an edge (u, v) is
|
| 2051 |
+
# defined as d[u] + weight[u][v] - d[v].
|
| 2052 |
+
#
|
| 2053 |
+
# neg_count also doubles as the DFS visit marker array.
|
| 2054 |
+
neg_count = {}
|
| 2055 |
+
for u in relabeled:
|
| 2056 |
+
# Skip visited nodes.
|
| 2057 |
+
if u in neg_count:
|
| 2058 |
+
continue
|
| 2059 |
+
d_u = d[u]
|
| 2060 |
+
# Skip nodes without out-edges of negative reduced costs.
|
| 2061 |
+
if all(d_u + weight(u, v, e) >= d[v] for v, e in G_succ[u].items()):
|
| 2062 |
+
continue
|
| 2063 |
+
# Nonrecursive DFS that inserts nodes reachable from u via edges of
|
| 2064 |
+
# nonpositive reduced costs into to_scan in (reverse) topological
|
| 2065 |
+
# order.
|
| 2066 |
+
stack = [(u, iter(G_succ[u].items()))]
|
| 2067 |
+
in_stack = {u}
|
| 2068 |
+
neg_count[u] = 0
|
| 2069 |
+
while stack:
|
| 2070 |
+
u, it = stack[-1]
|
| 2071 |
+
try:
|
| 2072 |
+
v, e = next(it)
|
| 2073 |
+
except StopIteration:
|
| 2074 |
+
to_scan.append(u)
|
| 2075 |
+
stack.pop()
|
| 2076 |
+
in_stack.remove(u)
|
| 2077 |
+
continue
|
| 2078 |
+
t = d[u] + weight(u, v, e)
|
| 2079 |
+
d_v = d[v]
|
| 2080 |
+
if t < d_v:
|
| 2081 |
+
is_neg = t < d_v
|
| 2082 |
+
d[v] = t
|
| 2083 |
+
pred[v] = u
|
| 2084 |
+
if v not in neg_count:
|
| 2085 |
+
neg_count[v] = neg_count[u] + int(is_neg)
|
| 2086 |
+
stack.append((v, iter(G_succ[v].items())))
|
| 2087 |
+
in_stack.add(v)
|
| 2088 |
+
elif v in in_stack and neg_count[u] + int(is_neg) > neg_count[v]:
|
| 2089 |
+
# (u, v) is a back edge, and the cycle formed by the
|
| 2090 |
+
# path v to u and (u, v) contains at least one edge of
|
| 2091 |
+
# negative reduced cost. The cycle must be of negative
|
| 2092 |
+
# cost.
|
| 2093 |
+
raise nx.NetworkXUnbounded("Negative cycle detected.")
|
| 2094 |
+
to_scan.reverse()
|
| 2095 |
+
return to_scan
|
| 2096 |
+
|
| 2097 |
+
def relax(to_scan):
|
| 2098 |
+
"""Relax out-edges of relabeled nodes."""
|
| 2099 |
+
relabeled = set()
|
| 2100 |
+
# Scan nodes in to_scan in topological order and relax incident
|
| 2101 |
+
# out-edges. Add the relabled nodes to labeled.
|
| 2102 |
+
for u in to_scan:
|
| 2103 |
+
d_u = d[u]
|
| 2104 |
+
for v, e in G_succ[u].items():
|
| 2105 |
+
w_e = weight(u, v, e)
|
| 2106 |
+
if d_u + w_e < d[v]:
|
| 2107 |
+
d[v] = d_u + w_e
|
| 2108 |
+
pred[v] = u
|
| 2109 |
+
relabeled.add(v)
|
| 2110 |
+
return relabeled
|
| 2111 |
+
|
| 2112 |
+
# Set of nodes relabled in the last round of scan operations. Denoted by B
|
| 2113 |
+
# in Goldberg and Radzik's paper.
|
| 2114 |
+
relabeled = {source}
|
| 2115 |
+
|
| 2116 |
+
while relabeled:
|
| 2117 |
+
to_scan = topo_sort(relabeled)
|
| 2118 |
+
relabeled = relax(to_scan)
|
| 2119 |
+
|
| 2120 |
+
d = {u: d[u] for u in pred}
|
| 2121 |
+
return pred, d
|
| 2122 |
+
|
| 2123 |
+
|
| 2124 |
+
@nx._dispatchable(edge_attrs="weight")
|
| 2125 |
+
def negative_edge_cycle(G, weight="weight", heuristic=True):
|
| 2126 |
+
"""Returns True if there exists a negative edge cycle anywhere in G.
|
| 2127 |
+
|
| 2128 |
+
Parameters
|
| 2129 |
+
----------
|
| 2130 |
+
G : NetworkX graph
|
| 2131 |
+
|
| 2132 |
+
weight : string or function
|
| 2133 |
+
If this is a string, then edge weights will be accessed via the
|
| 2134 |
+
edge attribute with this key (that is, the weight of the edge
|
| 2135 |
+
joining `u` to `v` will be ``G.edges[u, v][weight]``). If no
|
| 2136 |
+
such edge attribute exists, the weight of the edge is assumed to
|
| 2137 |
+
be one.
|
| 2138 |
+
|
| 2139 |
+
If this is a function, the weight of an edge is the value
|
| 2140 |
+
returned by the function. The function must accept exactly three
|
| 2141 |
+
positional arguments: the two endpoints of an edge and the
|
| 2142 |
+
dictionary of edge attributes for that edge. The function must
|
| 2143 |
+
return a number.
|
| 2144 |
+
|
| 2145 |
+
heuristic : bool
|
| 2146 |
+
Determines whether to use a heuristic to early detect negative
|
| 2147 |
+
cycles at a negligible cost. In case of graphs with a negative cycle,
|
| 2148 |
+
the performance of detection increases by at least an order of magnitude.
|
| 2149 |
+
|
| 2150 |
+
Returns
|
| 2151 |
+
-------
|
| 2152 |
+
negative_cycle : bool
|
| 2153 |
+
True if a negative edge cycle exists, otherwise False.
|
| 2154 |
+
|
| 2155 |
+
Examples
|
| 2156 |
+
--------
|
| 2157 |
+
>>> G = nx.cycle_graph(5, create_using=nx.DiGraph())
|
| 2158 |
+
>>> print(nx.negative_edge_cycle(G))
|
| 2159 |
+
False
|
| 2160 |
+
>>> G[1][2]["weight"] = -7
|
| 2161 |
+
>>> print(nx.negative_edge_cycle(G))
|
| 2162 |
+
True
|
| 2163 |
+
|
| 2164 |
+
Notes
|
| 2165 |
+
-----
|
| 2166 |
+
Edge weight attributes must be numerical.
|
| 2167 |
+
Distances are calculated as sums of weighted edges traversed.
|
| 2168 |
+
|
| 2169 |
+
This algorithm uses bellman_ford_predecessor_and_distance() but finds
|
| 2170 |
+
negative cycles on any component by first adding a new node connected to
|
| 2171 |
+
every node, and starting bellman_ford_predecessor_and_distance on that
|
| 2172 |
+
node. It then removes that extra node.
|
| 2173 |
+
"""
|
| 2174 |
+
if G.size() == 0:
|
| 2175 |
+
return False
|
| 2176 |
+
|
| 2177 |
+
# find unused node to use temporarily
|
| 2178 |
+
newnode = -1
|
| 2179 |
+
while newnode in G:
|
| 2180 |
+
newnode -= 1
|
| 2181 |
+
# connect it to all nodes
|
| 2182 |
+
G.add_edges_from([(newnode, n) for n in G])
|
| 2183 |
+
|
| 2184 |
+
try:
|
| 2185 |
+
bellman_ford_predecessor_and_distance(
|
| 2186 |
+
G, newnode, weight=weight, heuristic=heuristic
|
| 2187 |
+
)
|
| 2188 |
+
except nx.NetworkXUnbounded:
|
| 2189 |
+
return True
|
| 2190 |
+
finally:
|
| 2191 |
+
G.remove_node(newnode)
|
| 2192 |
+
return False
|
| 2193 |
+
|
| 2194 |
+
|
| 2195 |
+
@nx._dispatchable(edge_attrs="weight")
|
| 2196 |
+
def find_negative_cycle(G, source, weight="weight"):
|
| 2197 |
+
"""Returns a cycle with negative total weight if it exists.
|
| 2198 |
+
|
| 2199 |
+
Bellman-Ford is used to find shortest_paths. That algorithm
|
| 2200 |
+
stops if there exists a negative cycle. This algorithm
|
| 2201 |
+
picks up from there and returns the found negative cycle.
|
| 2202 |
+
|
| 2203 |
+
The cycle consists of a list of nodes in the cycle order. The last
|
| 2204 |
+
node equals the first to make it a cycle.
|
| 2205 |
+
You can look up the edge weights in the original graph. In the case
|
| 2206 |
+
of multigraphs the relevant edge is the minimal weight edge between
|
| 2207 |
+
the nodes in the 2-tuple.
|
| 2208 |
+
|
| 2209 |
+
If the graph has no negative cycle, a NetworkXError is raised.
|
| 2210 |
+
|
| 2211 |
+
Parameters
|
| 2212 |
+
----------
|
| 2213 |
+
G : NetworkX graph
|
| 2214 |
+
|
| 2215 |
+
source: node label
|
| 2216 |
+
The search for the negative cycle will start from this node.
|
| 2217 |
+
|
| 2218 |
+
weight : string or function
|
| 2219 |
+
If this is a string, then edge weights will be accessed via the
|
| 2220 |
+
edge attribute with this key (that is, the weight of the edge
|
| 2221 |
+
joining `u` to `v` will be ``G.edges[u, v][weight]``). If no
|
| 2222 |
+
such edge attribute exists, the weight of the edge is assumed to
|
| 2223 |
+
be one.
|
| 2224 |
+
|
| 2225 |
+
If this is a function, the weight of an edge is the value
|
| 2226 |
+
returned by the function. The function must accept exactly three
|
| 2227 |
+
positional arguments: the two endpoints of an edge and the
|
| 2228 |
+
dictionary of edge attributes for that edge. The function must
|
| 2229 |
+
return a number.
|
| 2230 |
+
|
| 2231 |
+
Examples
|
| 2232 |
+
--------
|
| 2233 |
+
>>> G = nx.DiGraph()
|
| 2234 |
+
>>> G.add_weighted_edges_from(
|
| 2235 |
+
... [(0, 1, 2), (1, 2, 2), (2, 0, 1), (1, 4, 2), (4, 0, -5)]
|
| 2236 |
+
... )
|
| 2237 |
+
>>> nx.find_negative_cycle(G, 0)
|
| 2238 |
+
[4, 0, 1, 4]
|
| 2239 |
+
|
| 2240 |
+
Returns
|
| 2241 |
+
-------
|
| 2242 |
+
cycle : list
|
| 2243 |
+
A list of nodes in the order of the cycle found. The last node
|
| 2244 |
+
equals the first to indicate a cycle.
|
| 2245 |
+
|
| 2246 |
+
Raises
|
| 2247 |
+
------
|
| 2248 |
+
NetworkXError
|
| 2249 |
+
If no negative cycle is found.
|
| 2250 |
+
"""
|
| 2251 |
+
weight = _weight_function(G, weight)
|
| 2252 |
+
pred = {source: []}
|
| 2253 |
+
|
| 2254 |
+
v = _inner_bellman_ford(G, [source], weight, pred=pred)
|
| 2255 |
+
if v is None:
|
| 2256 |
+
raise nx.NetworkXError("No negative cycles detected.")
|
| 2257 |
+
|
| 2258 |
+
# negative cycle detected... find it
|
| 2259 |
+
neg_cycle = []
|
| 2260 |
+
stack = [(v, list(pred[v]))]
|
| 2261 |
+
seen = {v}
|
| 2262 |
+
while stack:
|
| 2263 |
+
node, preds = stack[-1]
|
| 2264 |
+
if v in preds:
|
| 2265 |
+
# found the cycle
|
| 2266 |
+
neg_cycle.extend([node, v])
|
| 2267 |
+
neg_cycle = list(reversed(neg_cycle))
|
| 2268 |
+
return neg_cycle
|
| 2269 |
+
|
| 2270 |
+
if preds:
|
| 2271 |
+
nbr = preds.pop()
|
| 2272 |
+
if nbr not in seen:
|
| 2273 |
+
stack.append((nbr, list(pred[nbr])))
|
| 2274 |
+
neg_cycle.append(node)
|
| 2275 |
+
seen.add(nbr)
|
| 2276 |
+
else:
|
| 2277 |
+
stack.pop()
|
| 2278 |
+
if neg_cycle:
|
| 2279 |
+
neg_cycle.pop()
|
| 2280 |
+
else:
|
| 2281 |
+
if v in G[v] and weight(G, v, v) < 0:
|
| 2282 |
+
return [v, v]
|
| 2283 |
+
# should not reach here
|
| 2284 |
+
raise nx.NetworkXError("Negative cycle is detected but not found")
|
| 2285 |
+
# should not get here...
|
| 2286 |
+
msg = "negative cycle detected but not identified"
|
| 2287 |
+
raise nx.NetworkXUnbounded(msg)
|
| 2288 |
+
|
| 2289 |
+
|
| 2290 |
+
@nx._dispatchable(edge_attrs="weight")
|
| 2291 |
+
def bidirectional_dijkstra(G, source, target, weight="weight"):
|
| 2292 |
+
r"""Dijkstra's algorithm for shortest paths using bidirectional search.
|
| 2293 |
+
|
| 2294 |
+
Parameters
|
| 2295 |
+
----------
|
| 2296 |
+
G : NetworkX graph
|
| 2297 |
+
|
| 2298 |
+
source : node
|
| 2299 |
+
Starting node.
|
| 2300 |
+
|
| 2301 |
+
target : node
|
| 2302 |
+
Ending node.
|
| 2303 |
+
|
| 2304 |
+
weight : string or function
|
| 2305 |
+
If this is a string, then edge weights will be accessed via the
|
| 2306 |
+
edge attribute with this key (that is, the weight of the edge
|
| 2307 |
+
joining `u` to `v` will be ``G.edges[u, v][weight]``). If no
|
| 2308 |
+
such edge attribute exists, the weight of the edge is assumed to
|
| 2309 |
+
be one.
|
| 2310 |
+
|
| 2311 |
+
If this is a function, the weight of an edge is the value
|
| 2312 |
+
returned by the function. The function must accept exactly three
|
| 2313 |
+
positional arguments: the two endpoints of an edge and the
|
| 2314 |
+
dictionary of edge attributes for that edge. The function must
|
| 2315 |
+
return a number or None to indicate a hidden edge.
|
| 2316 |
+
|
| 2317 |
+
Returns
|
| 2318 |
+
-------
|
| 2319 |
+
length, path : number and list
|
| 2320 |
+
length is the distance from source to target.
|
| 2321 |
+
path is a list of nodes on a path from source to target.
|
| 2322 |
+
|
| 2323 |
+
Raises
|
| 2324 |
+
------
|
| 2325 |
+
NodeNotFound
|
| 2326 |
+
If `source` or `target` is not in `G`.
|
| 2327 |
+
|
| 2328 |
+
NetworkXNoPath
|
| 2329 |
+
If no path exists between source and target.
|
| 2330 |
+
|
| 2331 |
+
Examples
|
| 2332 |
+
--------
|
| 2333 |
+
>>> G = nx.path_graph(5)
|
| 2334 |
+
>>> length, path = nx.bidirectional_dijkstra(G, 0, 4)
|
| 2335 |
+
>>> print(length)
|
| 2336 |
+
4
|
| 2337 |
+
>>> print(path)
|
| 2338 |
+
[0, 1, 2, 3, 4]
|
| 2339 |
+
|
| 2340 |
+
Notes
|
| 2341 |
+
-----
|
| 2342 |
+
Edge weight attributes must be numerical.
|
| 2343 |
+
Distances are calculated as sums of weighted edges traversed.
|
| 2344 |
+
|
| 2345 |
+
The weight function can be used to hide edges by returning None.
|
| 2346 |
+
So ``weight = lambda u, v, d: 1 if d['color']=="red" else None``
|
| 2347 |
+
will find the shortest red path.
|
| 2348 |
+
|
| 2349 |
+
In practice bidirectional Dijkstra is much more than twice as fast as
|
| 2350 |
+
ordinary Dijkstra.
|
| 2351 |
+
|
| 2352 |
+
Ordinary Dijkstra expands nodes in a sphere-like manner from the
|
| 2353 |
+
source. The radius of this sphere will eventually be the length
|
| 2354 |
+
of the shortest path. Bidirectional Dijkstra will expand nodes
|
| 2355 |
+
from both the source and the target, making two spheres of half
|
| 2356 |
+
this radius. Volume of the first sphere is `\pi*r*r` while the
|
| 2357 |
+
others are `2*\pi*r/2*r/2`, making up half the volume.
|
| 2358 |
+
|
| 2359 |
+
This algorithm is not guaranteed to work if edge weights
|
| 2360 |
+
are negative or are floating point numbers
|
| 2361 |
+
(overflows and roundoff errors can cause problems).
|
| 2362 |
+
|
| 2363 |
+
See Also
|
| 2364 |
+
--------
|
| 2365 |
+
shortest_path
|
| 2366 |
+
shortest_path_length
|
| 2367 |
+
"""
|
| 2368 |
+
if source not in G:
|
| 2369 |
+
raise nx.NodeNotFound(f"Source {source} is not in G")
|
| 2370 |
+
|
| 2371 |
+
if target not in G:
|
| 2372 |
+
raise nx.NodeNotFound(f"Target {target} is not in G")
|
| 2373 |
+
|
| 2374 |
+
if source == target:
|
| 2375 |
+
return (0, [source])
|
| 2376 |
+
|
| 2377 |
+
weight = _weight_function(G, weight)
|
| 2378 |
+
push = heappush
|
| 2379 |
+
pop = heappop
|
| 2380 |
+
# Init: [Forward, Backward]
|
| 2381 |
+
dists = [{}, {}] # dictionary of final distances
|
| 2382 |
+
paths = [{source: [source]}, {target: [target]}] # dictionary of paths
|
| 2383 |
+
fringe = [[], []] # heap of (distance, node) for choosing node to expand
|
| 2384 |
+
seen = [{source: 0}, {target: 0}] # dict of distances to seen nodes
|
| 2385 |
+
c = count()
|
| 2386 |
+
# initialize fringe heap
|
| 2387 |
+
push(fringe[0], (0, next(c), source))
|
| 2388 |
+
push(fringe[1], (0, next(c), target))
|
| 2389 |
+
# neighs for extracting correct neighbor information
|
| 2390 |
+
if G.is_directed():
|
| 2391 |
+
neighs = [G._succ, G._pred]
|
| 2392 |
+
else:
|
| 2393 |
+
neighs = [G._adj, G._adj]
|
| 2394 |
+
# variables to hold shortest discovered path
|
| 2395 |
+
# finaldist = 1e30000
|
| 2396 |
+
finalpath = []
|
| 2397 |
+
dir = 1
|
| 2398 |
+
while fringe[0] and fringe[1]:
|
| 2399 |
+
# choose direction
|
| 2400 |
+
# dir == 0 is forward direction and dir == 1 is back
|
| 2401 |
+
dir = 1 - dir
|
| 2402 |
+
# extract closest to expand
|
| 2403 |
+
(dist, _, v) = pop(fringe[dir])
|
| 2404 |
+
if v in dists[dir]:
|
| 2405 |
+
# Shortest path to v has already been found
|
| 2406 |
+
continue
|
| 2407 |
+
# update distance
|
| 2408 |
+
dists[dir][v] = dist # equal to seen[dir][v]
|
| 2409 |
+
if v in dists[1 - dir]:
|
| 2410 |
+
# if we have scanned v in both directions we are done
|
| 2411 |
+
# we have now discovered the shortest path
|
| 2412 |
+
return (finaldist, finalpath)
|
| 2413 |
+
|
| 2414 |
+
for w, d in neighs[dir][v].items():
|
| 2415 |
+
# weight(v, w, d) for forward and weight(w, v, d) for back direction
|
| 2416 |
+
cost = weight(v, w, d) if dir == 0 else weight(w, v, d)
|
| 2417 |
+
if cost is None:
|
| 2418 |
+
continue
|
| 2419 |
+
vwLength = dists[dir][v] + cost
|
| 2420 |
+
if w in dists[dir]:
|
| 2421 |
+
if vwLength < dists[dir][w]:
|
| 2422 |
+
raise ValueError("Contradictory paths found: negative weights?")
|
| 2423 |
+
elif w not in seen[dir] or vwLength < seen[dir][w]:
|
| 2424 |
+
# relaxing
|
| 2425 |
+
seen[dir][w] = vwLength
|
| 2426 |
+
push(fringe[dir], (vwLength, next(c), w))
|
| 2427 |
+
paths[dir][w] = paths[dir][v] + [w]
|
| 2428 |
+
if w in seen[0] and w in seen[1]:
|
| 2429 |
+
# see if this path is better than the already
|
| 2430 |
+
# discovered shortest path
|
| 2431 |
+
totaldist = seen[0][w] + seen[1][w]
|
| 2432 |
+
if finalpath == [] or finaldist > totaldist:
|
| 2433 |
+
finaldist = totaldist
|
| 2434 |
+
revpath = paths[1][w][:]
|
| 2435 |
+
revpath.reverse()
|
| 2436 |
+
finalpath = paths[0][w] + revpath[1:]
|
| 2437 |
+
raise nx.NetworkXNoPath(f"No path between {source} and {target}.")
|
| 2438 |
+
|
| 2439 |
+
|
| 2440 |
+
@nx._dispatchable(edge_attrs="weight")
|
| 2441 |
+
def johnson(G, weight="weight"):
|
| 2442 |
+
r"""Uses Johnson's Algorithm to compute shortest paths.
|
| 2443 |
+
|
| 2444 |
+
Johnson's Algorithm finds a shortest path between each pair of
|
| 2445 |
+
nodes in a weighted graph even if negative weights are present.
|
| 2446 |
+
|
| 2447 |
+
Parameters
|
| 2448 |
+
----------
|
| 2449 |
+
G : NetworkX graph
|
| 2450 |
+
|
| 2451 |
+
weight : string or function
|
| 2452 |
+
If this is a string, then edge weights will be accessed via the
|
| 2453 |
+
edge attribute with this key (that is, the weight of the edge
|
| 2454 |
+
joining `u` to `v` will be ``G.edges[u, v][weight]``). If no
|
| 2455 |
+
such edge attribute exists, the weight of the edge is assumed to
|
| 2456 |
+
be one.
|
| 2457 |
+
|
| 2458 |
+
If this is a function, the weight of an edge is the value
|
| 2459 |
+
returned by the function. The function must accept exactly three
|
| 2460 |
+
positional arguments: the two endpoints of an edge and the
|
| 2461 |
+
dictionary of edge attributes for that edge. The function must
|
| 2462 |
+
return a number.
|
| 2463 |
+
|
| 2464 |
+
Returns
|
| 2465 |
+
-------
|
| 2466 |
+
distance : dictionary
|
| 2467 |
+
Dictionary, keyed by source and target, of shortest paths.
|
| 2468 |
+
|
| 2469 |
+
Examples
|
| 2470 |
+
--------
|
| 2471 |
+
>>> graph = nx.DiGraph()
|
| 2472 |
+
>>> graph.add_weighted_edges_from(
|
| 2473 |
+
... [("0", "3", 3), ("0", "1", -5), ("0", "2", 2), ("1", "2", 4), ("2", "3", 1)]
|
| 2474 |
+
... )
|
| 2475 |
+
>>> paths = nx.johnson(graph, weight="weight")
|
| 2476 |
+
>>> paths["0"]["2"]
|
| 2477 |
+
['0', '1', '2']
|
| 2478 |
+
|
| 2479 |
+
Notes
|
| 2480 |
+
-----
|
| 2481 |
+
Johnson's algorithm is suitable even for graphs with negative weights. It
|
| 2482 |
+
works by using the Bellman–Ford algorithm to compute a transformation of
|
| 2483 |
+
the input graph that removes all negative weights, allowing Dijkstra's
|
| 2484 |
+
algorithm to be used on the transformed graph.
|
| 2485 |
+
|
| 2486 |
+
The time complexity of this algorithm is $O(n^2 \log n + n m)$,
|
| 2487 |
+
where $n$ is the number of nodes and $m$ the number of edges in the
|
| 2488 |
+
graph. For dense graphs, this may be faster than the Floyd–Warshall
|
| 2489 |
+
algorithm.
|
| 2490 |
+
|
| 2491 |
+
See Also
|
| 2492 |
+
--------
|
| 2493 |
+
floyd_warshall_predecessor_and_distance
|
| 2494 |
+
floyd_warshall_numpy
|
| 2495 |
+
all_pairs_shortest_path
|
| 2496 |
+
all_pairs_shortest_path_length
|
| 2497 |
+
all_pairs_dijkstra_path
|
| 2498 |
+
bellman_ford_predecessor_and_distance
|
| 2499 |
+
all_pairs_bellman_ford_path
|
| 2500 |
+
all_pairs_bellman_ford_path_length
|
| 2501 |
+
|
| 2502 |
+
"""
|
| 2503 |
+
dist = {v: 0 for v in G}
|
| 2504 |
+
pred = {v: [] for v in G}
|
| 2505 |
+
weight = _weight_function(G, weight)
|
| 2506 |
+
|
| 2507 |
+
# Calculate distance of shortest paths
|
| 2508 |
+
dist_bellman = _bellman_ford(G, list(G), weight, pred=pred, dist=dist)
|
| 2509 |
+
|
| 2510 |
+
# Update the weight function to take into account the Bellman--Ford
|
| 2511 |
+
# relaxation distances.
|
| 2512 |
+
def new_weight(u, v, d):
|
| 2513 |
+
return weight(u, v, d) + dist_bellman[u] - dist_bellman[v]
|
| 2514 |
+
|
| 2515 |
+
def dist_path(v):
|
| 2516 |
+
paths = {v: [v]}
|
| 2517 |
+
_dijkstra(G, v, new_weight, paths=paths)
|
| 2518 |
+
return paths
|
| 2519 |
+
|
| 2520 |
+
return {v: dist_path(v) for v in G}
|
code/LaDi-RL-old-qwen-cod/LaDi-RL-old-qwen-cod/venv/lib64/python3.10/site-packages/networkx/algorithms/tests/__init__.py
ADDED
|
File without changes
|
code/LaDi-RL-old-qwen-cod/LaDi-RL-old-qwen-cod/venv/lib64/python3.10/site-packages/networkx/algorithms/tests/test_asteroidal.py
ADDED
|
@@ -0,0 +1,23 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
import networkx as nx
|
| 2 |
+
|
| 3 |
+
|
| 4 |
+
def test_is_at_free():
|
| 5 |
+
is_at_free = nx.asteroidal.is_at_free
|
| 6 |
+
|
| 7 |
+
cycle = nx.cycle_graph(6)
|
| 8 |
+
assert not is_at_free(cycle)
|
| 9 |
+
|
| 10 |
+
path = nx.path_graph(6)
|
| 11 |
+
assert is_at_free(path)
|
| 12 |
+
|
| 13 |
+
small_graph = nx.complete_graph(2)
|
| 14 |
+
assert is_at_free(small_graph)
|
| 15 |
+
|
| 16 |
+
petersen = nx.petersen_graph()
|
| 17 |
+
assert not is_at_free(petersen)
|
| 18 |
+
|
| 19 |
+
clique = nx.complete_graph(6)
|
| 20 |
+
assert is_at_free(clique)
|
| 21 |
+
|
| 22 |
+
line_clique = nx.line_graph(clique)
|
| 23 |
+
assert not is_at_free(line_clique)
|
code/LaDi-RL-old-qwen-cod/LaDi-RL-old-qwen-cod/venv/lib64/python3.10/site-packages/networkx/algorithms/tests/test_boundary.py
ADDED
|
@@ -0,0 +1,154 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
"""Unit tests for the :mod:`networkx.algorithms.boundary` module."""
|
| 2 |
+
|
| 3 |
+
from itertools import combinations
|
| 4 |
+
|
| 5 |
+
import pytest
|
| 6 |
+
|
| 7 |
+
import networkx as nx
|
| 8 |
+
from networkx import convert_node_labels_to_integers as cnlti
|
| 9 |
+
from networkx.utils import edges_equal
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
class TestNodeBoundary:
|
| 13 |
+
"""Unit tests for the :func:`~networkx.node_boundary` function."""
|
| 14 |
+
|
| 15 |
+
def test_null_graph(self):
|
| 16 |
+
"""Tests that the null graph has empty node boundaries."""
|
| 17 |
+
null = nx.null_graph()
|
| 18 |
+
assert nx.node_boundary(null, []) == set()
|
| 19 |
+
assert nx.node_boundary(null, [], []) == set()
|
| 20 |
+
assert nx.node_boundary(null, [1, 2, 3]) == set()
|
| 21 |
+
assert nx.node_boundary(null, [1, 2, 3], [4, 5, 6]) == set()
|
| 22 |
+
assert nx.node_boundary(null, [1, 2, 3], [3, 4, 5]) == set()
|
| 23 |
+
|
| 24 |
+
def test_path_graph(self):
|
| 25 |
+
P10 = cnlti(nx.path_graph(10), first_label=1)
|
| 26 |
+
assert nx.node_boundary(P10, []) == set()
|
| 27 |
+
assert nx.node_boundary(P10, [], []) == set()
|
| 28 |
+
assert nx.node_boundary(P10, [1, 2, 3]) == {4}
|
| 29 |
+
assert nx.node_boundary(P10, [4, 5, 6]) == {3, 7}
|
| 30 |
+
assert nx.node_boundary(P10, [3, 4, 5, 6, 7]) == {2, 8}
|
| 31 |
+
assert nx.node_boundary(P10, [8, 9, 10]) == {7}
|
| 32 |
+
assert nx.node_boundary(P10, [4, 5, 6], [9, 10]) == set()
|
| 33 |
+
|
| 34 |
+
def test_complete_graph(self):
|
| 35 |
+
K10 = cnlti(nx.complete_graph(10), first_label=1)
|
| 36 |
+
assert nx.node_boundary(K10, []) == set()
|
| 37 |
+
assert nx.node_boundary(K10, [], []) == set()
|
| 38 |
+
assert nx.node_boundary(K10, [1, 2, 3]) == {4, 5, 6, 7, 8, 9, 10}
|
| 39 |
+
assert nx.node_boundary(K10, [4, 5, 6]) == {1, 2, 3, 7, 8, 9, 10}
|
| 40 |
+
assert nx.node_boundary(K10, [3, 4, 5, 6, 7]) == {1, 2, 8, 9, 10}
|
| 41 |
+
assert nx.node_boundary(K10, [4, 5, 6], []) == set()
|
| 42 |
+
assert nx.node_boundary(K10, K10) == set()
|
| 43 |
+
assert nx.node_boundary(K10, [1, 2, 3], [3, 4, 5]) == {4, 5}
|
| 44 |
+
|
| 45 |
+
def test_petersen(self):
|
| 46 |
+
"""Check boundaries in the petersen graph
|
| 47 |
+
|
| 48 |
+
cheeger(G,k)=min(|bdy(S)|/|S| for |S|=k, 0<k<=|V(G)|/2)
|
| 49 |
+
|
| 50 |
+
"""
|
| 51 |
+
|
| 52 |
+
def cheeger(G, k):
|
| 53 |
+
return min(len(nx.node_boundary(G, nn)) / k for nn in combinations(G, k))
|
| 54 |
+
|
| 55 |
+
P = nx.petersen_graph()
|
| 56 |
+
assert cheeger(P, 1) == pytest.approx(3.00, abs=1e-2)
|
| 57 |
+
assert cheeger(P, 2) == pytest.approx(2.00, abs=1e-2)
|
| 58 |
+
assert cheeger(P, 3) == pytest.approx(1.67, abs=1e-2)
|
| 59 |
+
assert cheeger(P, 4) == pytest.approx(1.00, abs=1e-2)
|
| 60 |
+
assert cheeger(P, 5) == pytest.approx(0.80, abs=1e-2)
|
| 61 |
+
|
| 62 |
+
def test_directed(self):
|
| 63 |
+
"""Tests the node boundary of a directed graph."""
|
| 64 |
+
G = nx.DiGraph([(0, 1), (1, 2), (2, 3), (3, 4), (4, 0)])
|
| 65 |
+
S = {0, 1}
|
| 66 |
+
boundary = nx.node_boundary(G, S)
|
| 67 |
+
expected = {2}
|
| 68 |
+
assert boundary == expected
|
| 69 |
+
|
| 70 |
+
def test_multigraph(self):
|
| 71 |
+
"""Tests the node boundary of a multigraph."""
|
| 72 |
+
G = nx.MultiGraph(list(nx.cycle_graph(5).edges()) * 2)
|
| 73 |
+
S = {0, 1}
|
| 74 |
+
boundary = nx.node_boundary(G, S)
|
| 75 |
+
expected = {2, 4}
|
| 76 |
+
assert boundary == expected
|
| 77 |
+
|
| 78 |
+
def test_multidigraph(self):
|
| 79 |
+
"""Tests the edge boundary of a multidigraph."""
|
| 80 |
+
edges = [(0, 1), (1, 2), (2, 3), (3, 4), (4, 0)]
|
| 81 |
+
G = nx.MultiDiGraph(edges * 2)
|
| 82 |
+
S = {0, 1}
|
| 83 |
+
boundary = nx.node_boundary(G, S)
|
| 84 |
+
expected = {2}
|
| 85 |
+
assert boundary == expected
|
| 86 |
+
|
| 87 |
+
|
| 88 |
+
class TestEdgeBoundary:
|
| 89 |
+
"""Unit tests for the :func:`~networkx.edge_boundary` function."""
|
| 90 |
+
|
| 91 |
+
def test_null_graph(self):
|
| 92 |
+
null = nx.null_graph()
|
| 93 |
+
assert list(nx.edge_boundary(null, [])) == []
|
| 94 |
+
assert list(nx.edge_boundary(null, [], [])) == []
|
| 95 |
+
assert list(nx.edge_boundary(null, [1, 2, 3])) == []
|
| 96 |
+
assert list(nx.edge_boundary(null, [1, 2, 3], [4, 5, 6])) == []
|
| 97 |
+
assert list(nx.edge_boundary(null, [1, 2, 3], [3, 4, 5])) == []
|
| 98 |
+
|
| 99 |
+
def test_path_graph(self):
|
| 100 |
+
P10 = cnlti(nx.path_graph(10), first_label=1)
|
| 101 |
+
assert list(nx.edge_boundary(P10, [])) == []
|
| 102 |
+
assert list(nx.edge_boundary(P10, [], [])) == []
|
| 103 |
+
assert list(nx.edge_boundary(P10, [1, 2, 3])) == [(3, 4)]
|
| 104 |
+
assert sorted(nx.edge_boundary(P10, [4, 5, 6])) == [(4, 3), (6, 7)]
|
| 105 |
+
assert sorted(nx.edge_boundary(P10, [3, 4, 5, 6, 7])) == [(3, 2), (7, 8)]
|
| 106 |
+
assert list(nx.edge_boundary(P10, [8, 9, 10])) == [(8, 7)]
|
| 107 |
+
assert sorted(nx.edge_boundary(P10, [4, 5, 6], [9, 10])) == []
|
| 108 |
+
assert list(nx.edge_boundary(P10, [1, 2, 3], [3, 4, 5])) == [(2, 3), (3, 4)]
|
| 109 |
+
|
| 110 |
+
def test_complete_graph(self):
|
| 111 |
+
K10 = cnlti(nx.complete_graph(10), first_label=1)
|
| 112 |
+
|
| 113 |
+
def ilen(iterable):
|
| 114 |
+
return sum(1 for i in iterable)
|
| 115 |
+
|
| 116 |
+
assert list(nx.edge_boundary(K10, [])) == []
|
| 117 |
+
assert list(nx.edge_boundary(K10, [], [])) == []
|
| 118 |
+
assert ilen(nx.edge_boundary(K10, [1, 2, 3])) == 21
|
| 119 |
+
assert ilen(nx.edge_boundary(K10, [4, 5, 6, 7])) == 24
|
| 120 |
+
assert ilen(nx.edge_boundary(K10, [3, 4, 5, 6, 7])) == 25
|
| 121 |
+
assert ilen(nx.edge_boundary(K10, [8, 9, 10])) == 21
|
| 122 |
+
assert edges_equal(
|
| 123 |
+
nx.edge_boundary(K10, [4, 5, 6], [9, 10]),
|
| 124 |
+
[(4, 9), (4, 10), (5, 9), (5, 10), (6, 9), (6, 10)],
|
| 125 |
+
)
|
| 126 |
+
assert edges_equal(
|
| 127 |
+
nx.edge_boundary(K10, [1, 2, 3], [3, 4, 5]),
|
| 128 |
+
[(1, 3), (1, 4), (1, 5), (2, 3), (2, 4), (2, 5), (3, 4), (3, 5)],
|
| 129 |
+
)
|
| 130 |
+
|
| 131 |
+
def test_directed(self):
|
| 132 |
+
"""Tests the edge boundary of a directed graph."""
|
| 133 |
+
G = nx.DiGraph([(0, 1), (1, 2), (2, 3), (3, 4), (4, 0)])
|
| 134 |
+
S = {0, 1}
|
| 135 |
+
boundary = list(nx.edge_boundary(G, S))
|
| 136 |
+
expected = [(1, 2)]
|
| 137 |
+
assert boundary == expected
|
| 138 |
+
|
| 139 |
+
def test_multigraph(self):
|
| 140 |
+
"""Tests the edge boundary of a multigraph."""
|
| 141 |
+
G = nx.MultiGraph(list(nx.cycle_graph(5).edges()) * 2)
|
| 142 |
+
S = {0, 1}
|
| 143 |
+
boundary = list(nx.edge_boundary(G, S))
|
| 144 |
+
expected = [(0, 4), (0, 4), (1, 2), (1, 2)]
|
| 145 |
+
assert boundary == expected
|
| 146 |
+
|
| 147 |
+
def test_multidigraph(self):
|
| 148 |
+
"""Tests the edge boundary of a multidigraph."""
|
| 149 |
+
edges = [(0, 1), (1, 2), (2, 3), (3, 4), (4, 0)]
|
| 150 |
+
G = nx.MultiDiGraph(edges * 2)
|
| 151 |
+
S = {0, 1}
|
| 152 |
+
boundary = list(nx.edge_boundary(G, S))
|
| 153 |
+
expected = [(1, 2), (1, 2)]
|
| 154 |
+
assert boundary == expected
|
code/LaDi-RL-old-qwen-cod/LaDi-RL-old-qwen-cod/venv/lib64/python3.10/site-packages/networkx/algorithms/tests/test_bridges.py
ADDED
|
@@ -0,0 +1,144 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
"""Unit tests for bridge-finding algorithms."""
|
| 2 |
+
|
| 3 |
+
import pytest
|
| 4 |
+
|
| 5 |
+
import networkx as nx
|
| 6 |
+
|
| 7 |
+
|
| 8 |
+
class TestBridges:
|
| 9 |
+
"""Unit tests for the bridge-finding function."""
|
| 10 |
+
|
| 11 |
+
def test_single_bridge(self):
|
| 12 |
+
edges = [
|
| 13 |
+
# DFS tree edges.
|
| 14 |
+
(1, 2),
|
| 15 |
+
(2, 3),
|
| 16 |
+
(3, 4),
|
| 17 |
+
(3, 5),
|
| 18 |
+
(5, 6),
|
| 19 |
+
(6, 7),
|
| 20 |
+
(7, 8),
|
| 21 |
+
(5, 9),
|
| 22 |
+
(9, 10),
|
| 23 |
+
# Nontree edges.
|
| 24 |
+
(1, 3),
|
| 25 |
+
(1, 4),
|
| 26 |
+
(2, 5),
|
| 27 |
+
(5, 10),
|
| 28 |
+
(6, 8),
|
| 29 |
+
]
|
| 30 |
+
G = nx.Graph(edges)
|
| 31 |
+
source = 1
|
| 32 |
+
bridges = list(nx.bridges(G, source))
|
| 33 |
+
assert bridges == [(5, 6)]
|
| 34 |
+
|
| 35 |
+
def test_barbell_graph(self):
|
| 36 |
+
# The (3, 0) barbell graph has two triangles joined by a single edge.
|
| 37 |
+
G = nx.barbell_graph(3, 0)
|
| 38 |
+
source = 0
|
| 39 |
+
bridges = list(nx.bridges(G, source))
|
| 40 |
+
assert bridges == [(2, 3)]
|
| 41 |
+
|
| 42 |
+
def test_multiedge_bridge(self):
|
| 43 |
+
edges = [
|
| 44 |
+
(0, 1),
|
| 45 |
+
(0, 2),
|
| 46 |
+
(1, 2),
|
| 47 |
+
(1, 2),
|
| 48 |
+
(2, 3),
|
| 49 |
+
(3, 4),
|
| 50 |
+
(3, 4),
|
| 51 |
+
]
|
| 52 |
+
G = nx.MultiGraph(edges)
|
| 53 |
+
assert list(nx.bridges(G)) == [(2, 3)]
|
| 54 |
+
|
| 55 |
+
|
| 56 |
+
class TestHasBridges:
|
| 57 |
+
"""Unit tests for the has bridges function."""
|
| 58 |
+
|
| 59 |
+
def test_single_bridge(self):
|
| 60 |
+
edges = [
|
| 61 |
+
# DFS tree edges.
|
| 62 |
+
(1, 2),
|
| 63 |
+
(2, 3),
|
| 64 |
+
(3, 4),
|
| 65 |
+
(3, 5),
|
| 66 |
+
(5, 6), # The only bridge edge
|
| 67 |
+
(6, 7),
|
| 68 |
+
(7, 8),
|
| 69 |
+
(5, 9),
|
| 70 |
+
(9, 10),
|
| 71 |
+
# Nontree edges.
|
| 72 |
+
(1, 3),
|
| 73 |
+
(1, 4),
|
| 74 |
+
(2, 5),
|
| 75 |
+
(5, 10),
|
| 76 |
+
(6, 8),
|
| 77 |
+
]
|
| 78 |
+
G = nx.Graph(edges)
|
| 79 |
+
assert nx.has_bridges(G) # Default root
|
| 80 |
+
assert nx.has_bridges(G, root=1) # arbitrary root in G
|
| 81 |
+
|
| 82 |
+
def test_has_bridges_raises_root_not_in_G(self):
|
| 83 |
+
G = nx.Graph()
|
| 84 |
+
G.add_nodes_from([1, 2, 3])
|
| 85 |
+
with pytest.raises(nx.NodeNotFound):
|
| 86 |
+
nx.has_bridges(G, root=6)
|
| 87 |
+
|
| 88 |
+
def test_multiedge_bridge(self):
|
| 89 |
+
edges = [
|
| 90 |
+
(0, 1),
|
| 91 |
+
(0, 2),
|
| 92 |
+
(1, 2),
|
| 93 |
+
(1, 2),
|
| 94 |
+
(2, 3),
|
| 95 |
+
(3, 4),
|
| 96 |
+
(3, 4),
|
| 97 |
+
]
|
| 98 |
+
G = nx.MultiGraph(edges)
|
| 99 |
+
assert nx.has_bridges(G)
|
| 100 |
+
# Make every edge a multiedge
|
| 101 |
+
G.add_edges_from([(0, 1), (0, 2), (2, 3)])
|
| 102 |
+
assert not nx.has_bridges(G)
|
| 103 |
+
|
| 104 |
+
def test_bridges_multiple_components(self):
|
| 105 |
+
G = nx.Graph()
|
| 106 |
+
nx.add_path(G, [0, 1, 2]) # One connected component
|
| 107 |
+
nx.add_path(G, [4, 5, 6]) # Another connected component
|
| 108 |
+
assert list(nx.bridges(G, root=4)) == [(4, 5), (5, 6)]
|
| 109 |
+
|
| 110 |
+
|
| 111 |
+
class TestLocalBridges:
|
| 112 |
+
"""Unit tests for the local_bridge function."""
|
| 113 |
+
|
| 114 |
+
@classmethod
|
| 115 |
+
def setup_class(cls):
|
| 116 |
+
cls.BB = nx.barbell_graph(4, 0)
|
| 117 |
+
cls.square = nx.cycle_graph(4)
|
| 118 |
+
cls.tri = nx.cycle_graph(3)
|
| 119 |
+
|
| 120 |
+
def test_nospan(self):
|
| 121 |
+
expected = {(3, 4), (4, 3)}
|
| 122 |
+
assert next(nx.local_bridges(self.BB, with_span=False)) in expected
|
| 123 |
+
assert set(nx.local_bridges(self.square, with_span=False)) == self.square.edges
|
| 124 |
+
assert list(nx.local_bridges(self.tri, with_span=False)) == []
|
| 125 |
+
|
| 126 |
+
def test_no_weight(self):
|
| 127 |
+
inf = float("inf")
|
| 128 |
+
expected = {(3, 4, inf), (4, 3, inf)}
|
| 129 |
+
assert next(nx.local_bridges(self.BB)) in expected
|
| 130 |
+
expected = {(u, v, 3) for u, v in self.square.edges}
|
| 131 |
+
assert set(nx.local_bridges(self.square)) == expected
|
| 132 |
+
assert list(nx.local_bridges(self.tri)) == []
|
| 133 |
+
|
| 134 |
+
def test_weight(self):
|
| 135 |
+
inf = float("inf")
|
| 136 |
+
G = self.square.copy()
|
| 137 |
+
|
| 138 |
+
G.edges[1, 2]["weight"] = 2
|
| 139 |
+
expected = {(u, v, 5 - wt) for u, v, wt in G.edges(data="weight", default=1)}
|
| 140 |
+
assert set(nx.local_bridges(G, weight="weight")) == expected
|
| 141 |
+
|
| 142 |
+
expected = {(u, v, 6) for u, v in G.edges}
|
| 143 |
+
lb = nx.local_bridges(G, weight=lambda u, v, d: 2)
|
| 144 |
+
assert set(lb) == expected
|
code/LaDi-RL-old-qwen-cod/LaDi-RL-old-qwen-cod/venv/lib64/python3.10/site-packages/networkx/algorithms/tests/test_broadcasting.py
ADDED
|
@@ -0,0 +1,82 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
"""Unit tests for the broadcasting module."""
|
| 2 |
+
|
| 3 |
+
import math
|
| 4 |
+
|
| 5 |
+
import networkx as nx
|
| 6 |
+
|
| 7 |
+
|
| 8 |
+
def test_example_tree_broadcast():
|
| 9 |
+
"""
|
| 10 |
+
Test the BROADCAST algorithm on the example in the paper titled: "Information Dissemination in Trees"
|
| 11 |
+
"""
|
| 12 |
+
edge_list = [
|
| 13 |
+
(0, 1),
|
| 14 |
+
(1, 2),
|
| 15 |
+
(2, 7),
|
| 16 |
+
(3, 4),
|
| 17 |
+
(5, 4),
|
| 18 |
+
(4, 7),
|
| 19 |
+
(6, 7),
|
| 20 |
+
(7, 9),
|
| 21 |
+
(8, 9),
|
| 22 |
+
(9, 13),
|
| 23 |
+
(13, 14),
|
| 24 |
+
(14, 15),
|
| 25 |
+
(14, 16),
|
| 26 |
+
(14, 17),
|
| 27 |
+
(13, 11),
|
| 28 |
+
(11, 10),
|
| 29 |
+
(11, 12),
|
| 30 |
+
(13, 18),
|
| 31 |
+
(18, 19),
|
| 32 |
+
(18, 20),
|
| 33 |
+
]
|
| 34 |
+
G = nx.Graph(edge_list)
|
| 35 |
+
b_T, b_C = nx.tree_broadcast_center(G)
|
| 36 |
+
assert b_T == 6
|
| 37 |
+
assert b_C == {13, 9}
|
| 38 |
+
# test broadcast time from specific vertex
|
| 39 |
+
assert nx.tree_broadcast_time(G, 17) == 8
|
| 40 |
+
assert nx.tree_broadcast_time(G, 3) == 9
|
| 41 |
+
# test broadcast time of entire tree
|
| 42 |
+
assert nx.tree_broadcast_time(G) == 10
|
| 43 |
+
|
| 44 |
+
|
| 45 |
+
def test_path_broadcast():
|
| 46 |
+
for i in range(2, 12):
|
| 47 |
+
G = nx.path_graph(i)
|
| 48 |
+
b_T, b_C = nx.tree_broadcast_center(G)
|
| 49 |
+
assert b_T == math.ceil(i / 2)
|
| 50 |
+
assert b_C == {
|
| 51 |
+
math.ceil(i / 2),
|
| 52 |
+
math.floor(i / 2),
|
| 53 |
+
math.ceil(i / 2 - 1),
|
| 54 |
+
math.floor(i / 2 - 1),
|
| 55 |
+
}
|
| 56 |
+
assert nx.tree_broadcast_time(G) == i - 1
|
| 57 |
+
|
| 58 |
+
|
| 59 |
+
def test_empty_graph_broadcast():
|
| 60 |
+
H = nx.empty_graph(1)
|
| 61 |
+
b_T, b_C = nx.tree_broadcast_center(H)
|
| 62 |
+
assert b_T == 0
|
| 63 |
+
assert b_C == {0}
|
| 64 |
+
assert nx.tree_broadcast_time(H) == 0
|
| 65 |
+
|
| 66 |
+
|
| 67 |
+
def test_star_broadcast():
|
| 68 |
+
for i in range(4, 12):
|
| 69 |
+
G = nx.star_graph(i)
|
| 70 |
+
b_T, b_C = nx.tree_broadcast_center(G)
|
| 71 |
+
assert b_T == i
|
| 72 |
+
assert b_C == set(G.nodes())
|
| 73 |
+
assert nx.tree_broadcast_time(G) == b_T
|
| 74 |
+
|
| 75 |
+
|
| 76 |
+
def test_binomial_tree_broadcast():
|
| 77 |
+
for i in range(2, 8):
|
| 78 |
+
G = nx.binomial_tree(i)
|
| 79 |
+
b_T, b_C = nx.tree_broadcast_center(G)
|
| 80 |
+
assert b_T == i
|
| 81 |
+
assert b_C == {0, 2 ** (i - 1)}
|
| 82 |
+
assert nx.tree_broadcast_time(G) == 2 * i - 1
|
code/LaDi-RL-old-qwen-cod/LaDi-RL-old-qwen-cod/venv/lib64/python3.10/site-packages/networkx/algorithms/tests/test_chains.py
ADDED
|
@@ -0,0 +1,141 @@
|
|
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|
|
|
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|
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|
|
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|
|
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|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
"""Unit tests for the chain decomposition functions."""
|
| 2 |
+
|
| 3 |
+
from itertools import cycle, islice
|
| 4 |
+
|
| 5 |
+
import pytest
|
| 6 |
+
|
| 7 |
+
import networkx as nx
|
| 8 |
+
|
| 9 |
+
|
| 10 |
+
def cycles(seq):
|
| 11 |
+
"""Yields cyclic permutations of the given sequence.
|
| 12 |
+
|
| 13 |
+
For example::
|
| 14 |
+
|
| 15 |
+
>>> list(cycles("abc"))
|
| 16 |
+
[('a', 'b', 'c'), ('b', 'c', 'a'), ('c', 'a', 'b')]
|
| 17 |
+
|
| 18 |
+
"""
|
| 19 |
+
n = len(seq)
|
| 20 |
+
cycled_seq = cycle(seq)
|
| 21 |
+
for x in seq:
|
| 22 |
+
yield tuple(islice(cycled_seq, n))
|
| 23 |
+
next(cycled_seq)
|
| 24 |
+
|
| 25 |
+
|
| 26 |
+
def cyclic_equals(seq1, seq2):
|
| 27 |
+
"""Decide whether two sequences are equal up to cyclic permutations.
|
| 28 |
+
|
| 29 |
+
For example::
|
| 30 |
+
|
| 31 |
+
>>> cyclic_equals("xyz", "zxy")
|
| 32 |
+
True
|
| 33 |
+
>>> cyclic_equals("xyz", "zyx")
|
| 34 |
+
False
|
| 35 |
+
|
| 36 |
+
"""
|
| 37 |
+
# Cast seq2 to a tuple since `cycles()` yields tuples.
|
| 38 |
+
seq2 = tuple(seq2)
|
| 39 |
+
return any(x == tuple(seq2) for x in cycles(seq1))
|
| 40 |
+
|
| 41 |
+
|
| 42 |
+
class TestChainDecomposition:
|
| 43 |
+
"""Unit tests for the chain decomposition function."""
|
| 44 |
+
|
| 45 |
+
def assertContainsChain(self, chain, expected):
|
| 46 |
+
# A cycle could be expressed in two different orientations, one
|
| 47 |
+
# forward and one backward, so we need to check for cyclic
|
| 48 |
+
# equality in both orientations.
|
| 49 |
+
reversed_chain = list(reversed([tuple(reversed(e)) for e in chain]))
|
| 50 |
+
for candidate in expected:
|
| 51 |
+
if cyclic_equals(chain, candidate):
|
| 52 |
+
break
|
| 53 |
+
if cyclic_equals(reversed_chain, candidate):
|
| 54 |
+
break
|
| 55 |
+
else:
|
| 56 |
+
self.fail("chain not found")
|
| 57 |
+
|
| 58 |
+
def test_decomposition(self):
|
| 59 |
+
edges = [
|
| 60 |
+
# DFS tree edges.
|
| 61 |
+
(1, 2),
|
| 62 |
+
(2, 3),
|
| 63 |
+
(3, 4),
|
| 64 |
+
(3, 5),
|
| 65 |
+
(5, 6),
|
| 66 |
+
(6, 7),
|
| 67 |
+
(7, 8),
|
| 68 |
+
(5, 9),
|
| 69 |
+
(9, 10),
|
| 70 |
+
# Nontree edges.
|
| 71 |
+
(1, 3),
|
| 72 |
+
(1, 4),
|
| 73 |
+
(2, 5),
|
| 74 |
+
(5, 10),
|
| 75 |
+
(6, 8),
|
| 76 |
+
]
|
| 77 |
+
G = nx.Graph(edges)
|
| 78 |
+
expected = [
|
| 79 |
+
[(1, 3), (3, 2), (2, 1)],
|
| 80 |
+
[(1, 4), (4, 3)],
|
| 81 |
+
[(2, 5), (5, 3)],
|
| 82 |
+
[(5, 10), (10, 9), (9, 5)],
|
| 83 |
+
[(6, 8), (8, 7), (7, 6)],
|
| 84 |
+
]
|
| 85 |
+
chains = list(nx.chain_decomposition(G, root=1))
|
| 86 |
+
assert len(chains) == len(expected)
|
| 87 |
+
|
| 88 |
+
# This chain decomposition isn't unique
|
| 89 |
+
# for chain in chains:
|
| 90 |
+
# print(chain)
|
| 91 |
+
# self.assertContainsChain(chain, expected)
|
| 92 |
+
|
| 93 |
+
def test_barbell_graph(self):
|
| 94 |
+
# The (3, 0) barbell graph has two triangles joined by a single edge.
|
| 95 |
+
G = nx.barbell_graph(3, 0)
|
| 96 |
+
chains = list(nx.chain_decomposition(G, root=0))
|
| 97 |
+
expected = [[(0, 1), (1, 2), (2, 0)], [(3, 4), (4, 5), (5, 3)]]
|
| 98 |
+
assert len(chains) == len(expected)
|
| 99 |
+
for chain in chains:
|
| 100 |
+
self.assertContainsChain(chain, expected)
|
| 101 |
+
|
| 102 |
+
def test_disconnected_graph(self):
|
| 103 |
+
"""Test for a graph with multiple connected components."""
|
| 104 |
+
G = nx.barbell_graph(3, 0)
|
| 105 |
+
H = nx.barbell_graph(3, 0)
|
| 106 |
+
mapping = dict(zip(range(6), "abcdef"))
|
| 107 |
+
nx.relabel_nodes(H, mapping, copy=False)
|
| 108 |
+
G = nx.union(G, H)
|
| 109 |
+
chains = list(nx.chain_decomposition(G))
|
| 110 |
+
expected = [
|
| 111 |
+
[(0, 1), (1, 2), (2, 0)],
|
| 112 |
+
[(3, 4), (4, 5), (5, 3)],
|
| 113 |
+
[("a", "b"), ("b", "c"), ("c", "a")],
|
| 114 |
+
[("d", "e"), ("e", "f"), ("f", "d")],
|
| 115 |
+
]
|
| 116 |
+
assert len(chains) == len(expected)
|
| 117 |
+
for chain in chains:
|
| 118 |
+
self.assertContainsChain(chain, expected)
|
| 119 |
+
|
| 120 |
+
def test_disconnected_graph_root_node(self):
|
| 121 |
+
"""Test for a single component of a disconnected graph."""
|
| 122 |
+
G = nx.barbell_graph(3, 0)
|
| 123 |
+
H = nx.barbell_graph(3, 0)
|
| 124 |
+
mapping = dict(zip(range(6), "abcdef"))
|
| 125 |
+
nx.relabel_nodes(H, mapping, copy=False)
|
| 126 |
+
G = nx.union(G, H)
|
| 127 |
+
chains = list(nx.chain_decomposition(G, root="a"))
|
| 128 |
+
expected = [
|
| 129 |
+
[("a", "b"), ("b", "c"), ("c", "a")],
|
| 130 |
+
[("d", "e"), ("e", "f"), ("f", "d")],
|
| 131 |
+
]
|
| 132 |
+
assert len(chains) == len(expected)
|
| 133 |
+
for chain in chains:
|
| 134 |
+
self.assertContainsChain(chain, expected)
|
| 135 |
+
|
| 136 |
+
def test_chain_decomposition_root_not_in_G(self):
|
| 137 |
+
"""Test chain decomposition when root is not in graph"""
|
| 138 |
+
G = nx.Graph()
|
| 139 |
+
G.add_nodes_from([1, 2, 3])
|
| 140 |
+
with pytest.raises(nx.NodeNotFound):
|
| 141 |
+
nx.has_bridges(G, root=6)
|
code/LaDi-RL-old-qwen-cod/LaDi-RL-old-qwen-cod/venv/lib64/python3.10/site-packages/networkx/algorithms/tests/test_chordal.py
ADDED
|
@@ -0,0 +1,129 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
import pytest
|
| 2 |
+
|
| 3 |
+
import networkx as nx
|
| 4 |
+
|
| 5 |
+
|
| 6 |
+
class TestMCS:
|
| 7 |
+
@classmethod
|
| 8 |
+
def setup_class(cls):
|
| 9 |
+
# simple graph
|
| 10 |
+
connected_chordal_G = nx.Graph()
|
| 11 |
+
connected_chordal_G.add_edges_from(
|
| 12 |
+
[
|
| 13 |
+
(1, 2),
|
| 14 |
+
(1, 3),
|
| 15 |
+
(2, 3),
|
| 16 |
+
(2, 4),
|
| 17 |
+
(3, 4),
|
| 18 |
+
(3, 5),
|
| 19 |
+
(3, 6),
|
| 20 |
+
(4, 5),
|
| 21 |
+
(4, 6),
|
| 22 |
+
(5, 6),
|
| 23 |
+
]
|
| 24 |
+
)
|
| 25 |
+
cls.connected_chordal_G = connected_chordal_G
|
| 26 |
+
|
| 27 |
+
chordal_G = nx.Graph()
|
| 28 |
+
chordal_G.add_edges_from(
|
| 29 |
+
[
|
| 30 |
+
(1, 2),
|
| 31 |
+
(1, 3),
|
| 32 |
+
(2, 3),
|
| 33 |
+
(2, 4),
|
| 34 |
+
(3, 4),
|
| 35 |
+
(3, 5),
|
| 36 |
+
(3, 6),
|
| 37 |
+
(4, 5),
|
| 38 |
+
(4, 6),
|
| 39 |
+
(5, 6),
|
| 40 |
+
(7, 8),
|
| 41 |
+
]
|
| 42 |
+
)
|
| 43 |
+
chordal_G.add_node(9)
|
| 44 |
+
cls.chordal_G = chordal_G
|
| 45 |
+
|
| 46 |
+
non_chordal_G = nx.Graph()
|
| 47 |
+
non_chordal_G.add_edges_from([(1, 2), (1, 3), (2, 4), (2, 5), (3, 4), (3, 5)])
|
| 48 |
+
cls.non_chordal_G = non_chordal_G
|
| 49 |
+
|
| 50 |
+
self_loop_G = nx.Graph()
|
| 51 |
+
self_loop_G.add_edges_from([(1, 1)])
|
| 52 |
+
cls.self_loop_G = self_loop_G
|
| 53 |
+
|
| 54 |
+
@pytest.mark.parametrize("G", (nx.DiGraph(), nx.MultiGraph(), nx.MultiDiGraph()))
|
| 55 |
+
def test_is_chordal_not_implemented(self, G):
|
| 56 |
+
with pytest.raises(nx.NetworkXNotImplemented):
|
| 57 |
+
nx.is_chordal(G)
|
| 58 |
+
|
| 59 |
+
def test_is_chordal(self):
|
| 60 |
+
assert not nx.is_chordal(self.non_chordal_G)
|
| 61 |
+
assert nx.is_chordal(self.chordal_G)
|
| 62 |
+
assert nx.is_chordal(self.connected_chordal_G)
|
| 63 |
+
assert nx.is_chordal(nx.Graph())
|
| 64 |
+
assert nx.is_chordal(nx.complete_graph(3))
|
| 65 |
+
assert nx.is_chordal(nx.cycle_graph(3))
|
| 66 |
+
assert not nx.is_chordal(nx.cycle_graph(5))
|
| 67 |
+
assert nx.is_chordal(self.self_loop_G)
|
| 68 |
+
|
| 69 |
+
def test_induced_nodes(self):
|
| 70 |
+
G = nx.generators.classic.path_graph(10)
|
| 71 |
+
Induced_nodes = nx.find_induced_nodes(G, 1, 9, 2)
|
| 72 |
+
assert Induced_nodes == {1, 2, 3, 4, 5, 6, 7, 8, 9}
|
| 73 |
+
pytest.raises(
|
| 74 |
+
nx.NetworkXTreewidthBoundExceeded, nx.find_induced_nodes, G, 1, 9, 1
|
| 75 |
+
)
|
| 76 |
+
Induced_nodes = nx.find_induced_nodes(self.chordal_G, 1, 6)
|
| 77 |
+
assert Induced_nodes == {1, 2, 4, 6}
|
| 78 |
+
pytest.raises(nx.NetworkXError, nx.find_induced_nodes, self.non_chordal_G, 1, 5)
|
| 79 |
+
|
| 80 |
+
def test_graph_treewidth(self):
|
| 81 |
+
with pytest.raises(nx.NetworkXError, match="Input graph is not chordal"):
|
| 82 |
+
nx.chordal_graph_treewidth(self.non_chordal_G)
|
| 83 |
+
|
| 84 |
+
def test_chordal_find_cliques(self):
|
| 85 |
+
cliques = {
|
| 86 |
+
frozenset([9]),
|
| 87 |
+
frozenset([7, 8]),
|
| 88 |
+
frozenset([1, 2, 3]),
|
| 89 |
+
frozenset([2, 3, 4]),
|
| 90 |
+
frozenset([3, 4, 5, 6]),
|
| 91 |
+
}
|
| 92 |
+
assert set(nx.chordal_graph_cliques(self.chordal_G)) == cliques
|
| 93 |
+
with pytest.raises(nx.NetworkXError, match="Input graph is not chordal"):
|
| 94 |
+
set(nx.chordal_graph_cliques(self.non_chordal_G))
|
| 95 |
+
with pytest.raises(nx.NetworkXError, match="Input graph is not chordal"):
|
| 96 |
+
set(nx.chordal_graph_cliques(self.self_loop_G))
|
| 97 |
+
|
| 98 |
+
def test_chordal_find_cliques_path(self):
|
| 99 |
+
G = nx.path_graph(10)
|
| 100 |
+
cliqueset = nx.chordal_graph_cliques(G)
|
| 101 |
+
for u, v in G.edges():
|
| 102 |
+
assert frozenset([u, v]) in cliqueset or frozenset([v, u]) in cliqueset
|
| 103 |
+
|
| 104 |
+
def test_chordal_find_cliquesCC(self):
|
| 105 |
+
cliques = {frozenset([1, 2, 3]), frozenset([2, 3, 4]), frozenset([3, 4, 5, 6])}
|
| 106 |
+
cgc = nx.chordal_graph_cliques
|
| 107 |
+
assert set(cgc(self.connected_chordal_G)) == cliques
|
| 108 |
+
|
| 109 |
+
def test_complete_to_chordal_graph(self):
|
| 110 |
+
fgrg = nx.fast_gnp_random_graph
|
| 111 |
+
test_graphs = [
|
| 112 |
+
nx.barbell_graph(6, 2),
|
| 113 |
+
nx.cycle_graph(15),
|
| 114 |
+
nx.wheel_graph(20),
|
| 115 |
+
nx.grid_graph([10, 4]),
|
| 116 |
+
nx.ladder_graph(15),
|
| 117 |
+
nx.star_graph(5),
|
| 118 |
+
nx.bull_graph(),
|
| 119 |
+
fgrg(20, 0.3, seed=1),
|
| 120 |
+
]
|
| 121 |
+
for G in test_graphs:
|
| 122 |
+
H, a = nx.complete_to_chordal_graph(G)
|
| 123 |
+
assert nx.is_chordal(H)
|
| 124 |
+
assert len(a) == H.number_of_nodes()
|
| 125 |
+
if nx.is_chordal(G):
|
| 126 |
+
assert G.number_of_edges() == H.number_of_edges()
|
| 127 |
+
assert set(a.values()) == {0}
|
| 128 |
+
else:
|
| 129 |
+
assert len(set(a.values())) == H.number_of_nodes()
|
code/LaDi-RL-old-qwen-cod/LaDi-RL-old-qwen-cod/venv/lib64/python3.10/site-packages/networkx/algorithms/tests/test_clique.py
ADDED
|
@@ -0,0 +1,291 @@
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|
|
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|
|
|
|
| 1 |
+
import pytest
|
| 2 |
+
|
| 3 |
+
import networkx as nx
|
| 4 |
+
from networkx import convert_node_labels_to_integers as cnlti
|
| 5 |
+
|
| 6 |
+
|
| 7 |
+
class TestCliques:
|
| 8 |
+
def setup_method(self):
|
| 9 |
+
z = [3, 4, 3, 4, 2, 4, 2, 1, 1, 1, 1]
|
| 10 |
+
self.G = cnlti(nx.generators.havel_hakimi_graph(z), first_label=1)
|
| 11 |
+
self.cl = list(nx.find_cliques(self.G))
|
| 12 |
+
H = nx.complete_graph(6)
|
| 13 |
+
H = nx.relabel_nodes(H, {i: i + 1 for i in range(6)})
|
| 14 |
+
H.remove_edges_from([(2, 6), (2, 5), (2, 4), (1, 3), (5, 3)])
|
| 15 |
+
self.H = H
|
| 16 |
+
|
| 17 |
+
def test_find_cliques1(self):
|
| 18 |
+
cl = list(nx.find_cliques(self.G))
|
| 19 |
+
rcl = nx.find_cliques_recursive(self.G)
|
| 20 |
+
expected = [[2, 6, 1, 3], [2, 6, 4], [5, 4, 7], [8, 9], [10, 11]]
|
| 21 |
+
assert sorted(map(sorted, cl)) == sorted(map(sorted, rcl))
|
| 22 |
+
assert sorted(map(sorted, cl)) == sorted(map(sorted, expected))
|
| 23 |
+
|
| 24 |
+
def test_selfloops(self):
|
| 25 |
+
self.G.add_edge(1, 1)
|
| 26 |
+
cl = list(nx.find_cliques(self.G))
|
| 27 |
+
rcl = list(nx.find_cliques_recursive(self.G))
|
| 28 |
+
assert set(map(frozenset, cl)) == set(map(frozenset, rcl))
|
| 29 |
+
answer = [{2, 6, 1, 3}, {2, 6, 4}, {5, 4, 7}, {8, 9}, {10, 11}]
|
| 30 |
+
assert len(answer) == len(cl)
|
| 31 |
+
assert all(set(c) in answer for c in cl)
|
| 32 |
+
|
| 33 |
+
def test_find_cliques2(self):
|
| 34 |
+
hcl = list(nx.find_cliques(self.H))
|
| 35 |
+
assert sorted(map(sorted, hcl)) == [[1, 2], [1, 4, 5, 6], [2, 3], [3, 4, 6]]
|
| 36 |
+
|
| 37 |
+
def test_find_cliques3(self):
|
| 38 |
+
# all cliques are [[2, 6, 1, 3], [2, 6, 4], [5, 4, 7], [8, 9], [10, 11]]
|
| 39 |
+
|
| 40 |
+
cl = list(nx.find_cliques(self.G, [2]))
|
| 41 |
+
rcl = nx.find_cliques_recursive(self.G, [2])
|
| 42 |
+
expected = [[2, 6, 1, 3], [2, 6, 4]]
|
| 43 |
+
assert sorted(map(sorted, rcl)) == sorted(map(sorted, expected))
|
| 44 |
+
assert sorted(map(sorted, cl)) == sorted(map(sorted, expected))
|
| 45 |
+
|
| 46 |
+
cl = list(nx.find_cliques(self.G, [2, 3]))
|
| 47 |
+
rcl = nx.find_cliques_recursive(self.G, [2, 3])
|
| 48 |
+
expected = [[2, 6, 1, 3]]
|
| 49 |
+
assert sorted(map(sorted, rcl)) == sorted(map(sorted, expected))
|
| 50 |
+
assert sorted(map(sorted, cl)) == sorted(map(sorted, expected))
|
| 51 |
+
|
| 52 |
+
cl = list(nx.find_cliques(self.G, [2, 6, 4]))
|
| 53 |
+
rcl = nx.find_cliques_recursive(self.G, [2, 6, 4])
|
| 54 |
+
expected = [[2, 6, 4]]
|
| 55 |
+
assert sorted(map(sorted, rcl)) == sorted(map(sorted, expected))
|
| 56 |
+
assert sorted(map(sorted, cl)) == sorted(map(sorted, expected))
|
| 57 |
+
|
| 58 |
+
cl = list(nx.find_cliques(self.G, [2, 6, 4]))
|
| 59 |
+
rcl = nx.find_cliques_recursive(self.G, [2, 6, 4])
|
| 60 |
+
expected = [[2, 6, 4]]
|
| 61 |
+
assert sorted(map(sorted, rcl)) == sorted(map(sorted, expected))
|
| 62 |
+
assert sorted(map(sorted, cl)) == sorted(map(sorted, expected))
|
| 63 |
+
|
| 64 |
+
with pytest.raises(ValueError):
|
| 65 |
+
list(nx.find_cliques(self.G, [2, 6, 4, 1]))
|
| 66 |
+
|
| 67 |
+
with pytest.raises(ValueError):
|
| 68 |
+
list(nx.find_cliques_recursive(self.G, [2, 6, 4, 1]))
|
| 69 |
+
|
| 70 |
+
def test_number_of_cliques(self):
|
| 71 |
+
G = self.G
|
| 72 |
+
assert nx.number_of_cliques(G, 1) == 1
|
| 73 |
+
assert list(nx.number_of_cliques(G, [1]).values()) == [1]
|
| 74 |
+
assert list(nx.number_of_cliques(G, [1, 2]).values()) == [1, 2]
|
| 75 |
+
assert nx.number_of_cliques(G, [1, 2]) == {1: 1, 2: 2}
|
| 76 |
+
assert nx.number_of_cliques(G, 2) == 2
|
| 77 |
+
assert nx.number_of_cliques(G) == {
|
| 78 |
+
1: 1,
|
| 79 |
+
2: 2,
|
| 80 |
+
3: 1,
|
| 81 |
+
4: 2,
|
| 82 |
+
5: 1,
|
| 83 |
+
6: 2,
|
| 84 |
+
7: 1,
|
| 85 |
+
8: 1,
|
| 86 |
+
9: 1,
|
| 87 |
+
10: 1,
|
| 88 |
+
11: 1,
|
| 89 |
+
}
|
| 90 |
+
assert nx.number_of_cliques(G, nodes=list(G)) == {
|
| 91 |
+
1: 1,
|
| 92 |
+
2: 2,
|
| 93 |
+
3: 1,
|
| 94 |
+
4: 2,
|
| 95 |
+
5: 1,
|
| 96 |
+
6: 2,
|
| 97 |
+
7: 1,
|
| 98 |
+
8: 1,
|
| 99 |
+
9: 1,
|
| 100 |
+
10: 1,
|
| 101 |
+
11: 1,
|
| 102 |
+
}
|
| 103 |
+
assert nx.number_of_cliques(G, nodes=[2, 3, 4]) == {2: 2, 3: 1, 4: 2}
|
| 104 |
+
assert nx.number_of_cliques(G, cliques=self.cl) == {
|
| 105 |
+
1: 1,
|
| 106 |
+
2: 2,
|
| 107 |
+
3: 1,
|
| 108 |
+
4: 2,
|
| 109 |
+
5: 1,
|
| 110 |
+
6: 2,
|
| 111 |
+
7: 1,
|
| 112 |
+
8: 1,
|
| 113 |
+
9: 1,
|
| 114 |
+
10: 1,
|
| 115 |
+
11: 1,
|
| 116 |
+
}
|
| 117 |
+
assert nx.number_of_cliques(G, list(G), cliques=self.cl) == {
|
| 118 |
+
1: 1,
|
| 119 |
+
2: 2,
|
| 120 |
+
3: 1,
|
| 121 |
+
4: 2,
|
| 122 |
+
5: 1,
|
| 123 |
+
6: 2,
|
| 124 |
+
7: 1,
|
| 125 |
+
8: 1,
|
| 126 |
+
9: 1,
|
| 127 |
+
10: 1,
|
| 128 |
+
11: 1,
|
| 129 |
+
}
|
| 130 |
+
|
| 131 |
+
def test_node_clique_number(self):
|
| 132 |
+
G = self.G
|
| 133 |
+
assert nx.node_clique_number(G, 1) == 4
|
| 134 |
+
assert list(nx.node_clique_number(G, [1]).values()) == [4]
|
| 135 |
+
assert list(nx.node_clique_number(G, [1, 2]).values()) == [4, 4]
|
| 136 |
+
assert nx.node_clique_number(G, [1, 2]) == {1: 4, 2: 4}
|
| 137 |
+
assert nx.node_clique_number(G, 1) == 4
|
| 138 |
+
assert nx.node_clique_number(G) == {
|
| 139 |
+
1: 4,
|
| 140 |
+
2: 4,
|
| 141 |
+
3: 4,
|
| 142 |
+
4: 3,
|
| 143 |
+
5: 3,
|
| 144 |
+
6: 4,
|
| 145 |
+
7: 3,
|
| 146 |
+
8: 2,
|
| 147 |
+
9: 2,
|
| 148 |
+
10: 2,
|
| 149 |
+
11: 2,
|
| 150 |
+
}
|
| 151 |
+
assert nx.node_clique_number(G, cliques=self.cl) == {
|
| 152 |
+
1: 4,
|
| 153 |
+
2: 4,
|
| 154 |
+
3: 4,
|
| 155 |
+
4: 3,
|
| 156 |
+
5: 3,
|
| 157 |
+
6: 4,
|
| 158 |
+
7: 3,
|
| 159 |
+
8: 2,
|
| 160 |
+
9: 2,
|
| 161 |
+
10: 2,
|
| 162 |
+
11: 2,
|
| 163 |
+
}
|
| 164 |
+
assert nx.node_clique_number(G, [1, 2], cliques=self.cl) == {1: 4, 2: 4}
|
| 165 |
+
assert nx.node_clique_number(G, 1, cliques=self.cl) == 4
|
| 166 |
+
|
| 167 |
+
def test_make_clique_bipartite(self):
|
| 168 |
+
G = self.G
|
| 169 |
+
B = nx.make_clique_bipartite(G)
|
| 170 |
+
assert sorted(B) == [-5, -4, -3, -2, -1, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11]
|
| 171 |
+
# Project onto the nodes of the original graph.
|
| 172 |
+
H = nx.projected_graph(B, range(1, 12))
|
| 173 |
+
assert H.adj == G.adj
|
| 174 |
+
# Project onto the nodes representing the cliques.
|
| 175 |
+
H1 = nx.projected_graph(B, range(-5, 0))
|
| 176 |
+
# Relabel the negative numbers as positive ones.
|
| 177 |
+
H1 = nx.relabel_nodes(H1, {-v: v for v in range(1, 6)})
|
| 178 |
+
assert sorted(H1) == [1, 2, 3, 4, 5]
|
| 179 |
+
|
| 180 |
+
def test_make_max_clique_graph(self):
|
| 181 |
+
"""Tests that the maximal clique graph is the same as the bipartite
|
| 182 |
+
clique graph after being projected onto the nodes representing the
|
| 183 |
+
cliques.
|
| 184 |
+
|
| 185 |
+
"""
|
| 186 |
+
G = self.G
|
| 187 |
+
B = nx.make_clique_bipartite(G)
|
| 188 |
+
# Project onto the nodes representing the cliques.
|
| 189 |
+
H1 = nx.projected_graph(B, range(-5, 0))
|
| 190 |
+
# Relabel the negative numbers as nonnegative ones, starting at
|
| 191 |
+
# 0.
|
| 192 |
+
H1 = nx.relabel_nodes(H1, {-v: v - 1 for v in range(1, 6)})
|
| 193 |
+
H2 = nx.make_max_clique_graph(G)
|
| 194 |
+
assert H1.adj == H2.adj
|
| 195 |
+
|
| 196 |
+
def test_directed(self):
|
| 197 |
+
with pytest.raises(nx.NetworkXNotImplemented):
|
| 198 |
+
next(nx.find_cliques(nx.DiGraph()))
|
| 199 |
+
|
| 200 |
+
def test_find_cliques_trivial(self):
|
| 201 |
+
G = nx.Graph()
|
| 202 |
+
assert sorted(nx.find_cliques(G)) == []
|
| 203 |
+
assert sorted(nx.find_cliques_recursive(G)) == []
|
| 204 |
+
|
| 205 |
+
def test_make_max_clique_graph_create_using(self):
|
| 206 |
+
G = nx.Graph([(1, 2), (3, 1), (4, 1), (5, 6)])
|
| 207 |
+
E = nx.Graph([(0, 1), (0, 2), (1, 2)])
|
| 208 |
+
E.add_node(3)
|
| 209 |
+
assert nx.is_isomorphic(nx.make_max_clique_graph(G, create_using=nx.Graph), E)
|
| 210 |
+
|
| 211 |
+
|
| 212 |
+
class TestEnumerateAllCliques:
|
| 213 |
+
def test_paper_figure_4(self):
|
| 214 |
+
# Same graph as given in Fig. 4 of paper enumerate_all_cliques is
|
| 215 |
+
# based on.
|
| 216 |
+
# http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=1559964&isnumber=33129
|
| 217 |
+
G = nx.Graph()
|
| 218 |
+
edges_fig_4 = [
|
| 219 |
+
("a", "b"),
|
| 220 |
+
("a", "c"),
|
| 221 |
+
("a", "d"),
|
| 222 |
+
("a", "e"),
|
| 223 |
+
("b", "c"),
|
| 224 |
+
("b", "d"),
|
| 225 |
+
("b", "e"),
|
| 226 |
+
("c", "d"),
|
| 227 |
+
("c", "e"),
|
| 228 |
+
("d", "e"),
|
| 229 |
+
("f", "b"),
|
| 230 |
+
("f", "c"),
|
| 231 |
+
("f", "g"),
|
| 232 |
+
("g", "f"),
|
| 233 |
+
("g", "c"),
|
| 234 |
+
("g", "d"),
|
| 235 |
+
("g", "e"),
|
| 236 |
+
]
|
| 237 |
+
G.add_edges_from(edges_fig_4)
|
| 238 |
+
|
| 239 |
+
cliques = list(nx.enumerate_all_cliques(G))
|
| 240 |
+
clique_sizes = list(map(len, cliques))
|
| 241 |
+
assert sorted(clique_sizes) == clique_sizes
|
| 242 |
+
|
| 243 |
+
expected_cliques = [
|
| 244 |
+
["a"],
|
| 245 |
+
["b"],
|
| 246 |
+
["c"],
|
| 247 |
+
["d"],
|
| 248 |
+
["e"],
|
| 249 |
+
["f"],
|
| 250 |
+
["g"],
|
| 251 |
+
["a", "b"],
|
| 252 |
+
["a", "b", "d"],
|
| 253 |
+
["a", "b", "d", "e"],
|
| 254 |
+
["a", "b", "e"],
|
| 255 |
+
["a", "c"],
|
| 256 |
+
["a", "c", "d"],
|
| 257 |
+
["a", "c", "d", "e"],
|
| 258 |
+
["a", "c", "e"],
|
| 259 |
+
["a", "d"],
|
| 260 |
+
["a", "d", "e"],
|
| 261 |
+
["a", "e"],
|
| 262 |
+
["b", "c"],
|
| 263 |
+
["b", "c", "d"],
|
| 264 |
+
["b", "c", "d", "e"],
|
| 265 |
+
["b", "c", "e"],
|
| 266 |
+
["b", "c", "f"],
|
| 267 |
+
["b", "d"],
|
| 268 |
+
["b", "d", "e"],
|
| 269 |
+
["b", "e"],
|
| 270 |
+
["b", "f"],
|
| 271 |
+
["c", "d"],
|
| 272 |
+
["c", "d", "e"],
|
| 273 |
+
["c", "d", "e", "g"],
|
| 274 |
+
["c", "d", "g"],
|
| 275 |
+
["c", "e"],
|
| 276 |
+
["c", "e", "g"],
|
| 277 |
+
["c", "f"],
|
| 278 |
+
["c", "f", "g"],
|
| 279 |
+
["c", "g"],
|
| 280 |
+
["d", "e"],
|
| 281 |
+
["d", "e", "g"],
|
| 282 |
+
["d", "g"],
|
| 283 |
+
["e", "g"],
|
| 284 |
+
["f", "g"],
|
| 285 |
+
["a", "b", "c"],
|
| 286 |
+
["a", "b", "c", "d"],
|
| 287 |
+
["a", "b", "c", "d", "e"],
|
| 288 |
+
["a", "b", "c", "e"],
|
| 289 |
+
]
|
| 290 |
+
|
| 291 |
+
assert sorted(map(sorted, cliques)) == sorted(map(sorted, expected_cliques))
|
code/LaDi-RL-old-qwen-cod/LaDi-RL-old-qwen-cod/venv/lib64/python3.10/site-packages/networkx/algorithms/tests/test_cluster.py
ADDED
|
@@ -0,0 +1,549 @@
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|
| 1 |
+
import pytest
|
| 2 |
+
|
| 3 |
+
import networkx as nx
|
| 4 |
+
|
| 5 |
+
|
| 6 |
+
class TestTriangles:
|
| 7 |
+
def test_empty(self):
|
| 8 |
+
G = nx.Graph()
|
| 9 |
+
assert list(nx.triangles(G).values()) == []
|
| 10 |
+
|
| 11 |
+
def test_path(self):
|
| 12 |
+
G = nx.path_graph(10)
|
| 13 |
+
assert list(nx.triangles(G).values()) == [0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
|
| 14 |
+
assert nx.triangles(G) == {
|
| 15 |
+
0: 0,
|
| 16 |
+
1: 0,
|
| 17 |
+
2: 0,
|
| 18 |
+
3: 0,
|
| 19 |
+
4: 0,
|
| 20 |
+
5: 0,
|
| 21 |
+
6: 0,
|
| 22 |
+
7: 0,
|
| 23 |
+
8: 0,
|
| 24 |
+
9: 0,
|
| 25 |
+
}
|
| 26 |
+
|
| 27 |
+
def test_cubical(self):
|
| 28 |
+
G = nx.cubical_graph()
|
| 29 |
+
assert list(nx.triangles(G).values()) == [0, 0, 0, 0, 0, 0, 0, 0]
|
| 30 |
+
assert nx.triangles(G, 1) == 0
|
| 31 |
+
assert list(nx.triangles(G, [1, 2]).values()) == [0, 0]
|
| 32 |
+
assert nx.triangles(G, 1) == 0
|
| 33 |
+
assert nx.triangles(G, [1, 2]) == {1: 0, 2: 0}
|
| 34 |
+
|
| 35 |
+
def test_k5(self):
|
| 36 |
+
G = nx.complete_graph(5)
|
| 37 |
+
assert list(nx.triangles(G).values()) == [6, 6, 6, 6, 6]
|
| 38 |
+
assert sum(nx.triangles(G).values()) / 3 == 10
|
| 39 |
+
assert nx.triangles(G, 1) == 6
|
| 40 |
+
G.remove_edge(1, 2)
|
| 41 |
+
assert list(nx.triangles(G).values()) == [5, 3, 3, 5, 5]
|
| 42 |
+
assert nx.triangles(G, 1) == 3
|
| 43 |
+
G.add_edge(3, 3) # ignore self-edges
|
| 44 |
+
assert list(nx.triangles(G).values()) == [5, 3, 3, 5, 5]
|
| 45 |
+
assert nx.triangles(G, 3) == 5
|
| 46 |
+
|
| 47 |
+
|
| 48 |
+
class TestDirectedClustering:
|
| 49 |
+
def test_clustering(self):
|
| 50 |
+
G = nx.DiGraph()
|
| 51 |
+
assert list(nx.clustering(G).values()) == []
|
| 52 |
+
assert nx.clustering(G) == {}
|
| 53 |
+
|
| 54 |
+
def test_path(self):
|
| 55 |
+
G = nx.path_graph(10, create_using=nx.DiGraph())
|
| 56 |
+
assert list(nx.clustering(G).values()) == [
|
| 57 |
+
0,
|
| 58 |
+
0,
|
| 59 |
+
0,
|
| 60 |
+
0,
|
| 61 |
+
0,
|
| 62 |
+
0,
|
| 63 |
+
0,
|
| 64 |
+
0,
|
| 65 |
+
0,
|
| 66 |
+
0,
|
| 67 |
+
]
|
| 68 |
+
assert nx.clustering(G) == {
|
| 69 |
+
0: 0,
|
| 70 |
+
1: 0,
|
| 71 |
+
2: 0,
|
| 72 |
+
3: 0,
|
| 73 |
+
4: 0,
|
| 74 |
+
5: 0,
|
| 75 |
+
6: 0,
|
| 76 |
+
7: 0,
|
| 77 |
+
8: 0,
|
| 78 |
+
9: 0,
|
| 79 |
+
}
|
| 80 |
+
assert nx.clustering(G, 0) == 0
|
| 81 |
+
|
| 82 |
+
def test_k5(self):
|
| 83 |
+
G = nx.complete_graph(5, create_using=nx.DiGraph())
|
| 84 |
+
assert list(nx.clustering(G).values()) == [1, 1, 1, 1, 1]
|
| 85 |
+
assert nx.average_clustering(G) == 1
|
| 86 |
+
G.remove_edge(1, 2)
|
| 87 |
+
assert list(nx.clustering(G).values()) == [
|
| 88 |
+
11 / 12,
|
| 89 |
+
1,
|
| 90 |
+
1,
|
| 91 |
+
11 / 12,
|
| 92 |
+
11 / 12,
|
| 93 |
+
]
|
| 94 |
+
assert nx.clustering(G, [1, 4]) == {1: 1, 4: 11 / 12}
|
| 95 |
+
G.remove_edge(2, 1)
|
| 96 |
+
assert list(nx.clustering(G).values()) == [
|
| 97 |
+
5 / 6,
|
| 98 |
+
1,
|
| 99 |
+
1,
|
| 100 |
+
5 / 6,
|
| 101 |
+
5 / 6,
|
| 102 |
+
]
|
| 103 |
+
assert nx.clustering(G, [1, 4]) == {1: 1, 4: 0.83333333333333337}
|
| 104 |
+
assert nx.clustering(G, 4) == 5 / 6
|
| 105 |
+
|
| 106 |
+
def test_triangle_and_edge(self):
|
| 107 |
+
G = nx.cycle_graph(3, create_using=nx.DiGraph())
|
| 108 |
+
G.add_edge(0, 4)
|
| 109 |
+
assert nx.clustering(G)[0] == 1 / 6
|
| 110 |
+
|
| 111 |
+
|
| 112 |
+
class TestDirectedWeightedClustering:
|
| 113 |
+
@classmethod
|
| 114 |
+
def setup_class(cls):
|
| 115 |
+
global np
|
| 116 |
+
np = pytest.importorskip("numpy")
|
| 117 |
+
|
| 118 |
+
def test_clustering(self):
|
| 119 |
+
G = nx.DiGraph()
|
| 120 |
+
assert list(nx.clustering(G, weight="weight").values()) == []
|
| 121 |
+
assert nx.clustering(G) == {}
|
| 122 |
+
|
| 123 |
+
def test_path(self):
|
| 124 |
+
G = nx.path_graph(10, create_using=nx.DiGraph())
|
| 125 |
+
assert list(nx.clustering(G, weight="weight").values()) == [
|
| 126 |
+
0,
|
| 127 |
+
0,
|
| 128 |
+
0,
|
| 129 |
+
0,
|
| 130 |
+
0,
|
| 131 |
+
0,
|
| 132 |
+
0,
|
| 133 |
+
0,
|
| 134 |
+
0,
|
| 135 |
+
0,
|
| 136 |
+
]
|
| 137 |
+
assert nx.clustering(G, weight="weight") == {
|
| 138 |
+
0: 0,
|
| 139 |
+
1: 0,
|
| 140 |
+
2: 0,
|
| 141 |
+
3: 0,
|
| 142 |
+
4: 0,
|
| 143 |
+
5: 0,
|
| 144 |
+
6: 0,
|
| 145 |
+
7: 0,
|
| 146 |
+
8: 0,
|
| 147 |
+
9: 0,
|
| 148 |
+
}
|
| 149 |
+
|
| 150 |
+
def test_k5(self):
|
| 151 |
+
G = nx.complete_graph(5, create_using=nx.DiGraph())
|
| 152 |
+
assert list(nx.clustering(G, weight="weight").values()) == [1, 1, 1, 1, 1]
|
| 153 |
+
assert nx.average_clustering(G, weight="weight") == 1
|
| 154 |
+
G.remove_edge(1, 2)
|
| 155 |
+
assert list(nx.clustering(G, weight="weight").values()) == [
|
| 156 |
+
11 / 12,
|
| 157 |
+
1,
|
| 158 |
+
1,
|
| 159 |
+
11 / 12,
|
| 160 |
+
11 / 12,
|
| 161 |
+
]
|
| 162 |
+
assert nx.clustering(G, [1, 4], weight="weight") == {1: 1, 4: 11 / 12}
|
| 163 |
+
G.remove_edge(2, 1)
|
| 164 |
+
assert list(nx.clustering(G, weight="weight").values()) == [
|
| 165 |
+
5 / 6,
|
| 166 |
+
1,
|
| 167 |
+
1,
|
| 168 |
+
5 / 6,
|
| 169 |
+
5 / 6,
|
| 170 |
+
]
|
| 171 |
+
assert nx.clustering(G, [1, 4], weight="weight") == {
|
| 172 |
+
1: 1,
|
| 173 |
+
4: 0.83333333333333337,
|
| 174 |
+
}
|
| 175 |
+
|
| 176 |
+
def test_triangle_and_edge(self):
|
| 177 |
+
G = nx.cycle_graph(3, create_using=nx.DiGraph())
|
| 178 |
+
G.add_edge(0, 4, weight=2)
|
| 179 |
+
assert nx.clustering(G)[0] == 1 / 6
|
| 180 |
+
# Relaxed comparisons to allow graphblas-algorithms to pass tests
|
| 181 |
+
np.testing.assert_allclose(nx.clustering(G, weight="weight")[0], 1 / 12)
|
| 182 |
+
np.testing.assert_allclose(nx.clustering(G, 0, weight="weight"), 1 / 12)
|
| 183 |
+
|
| 184 |
+
|
| 185 |
+
class TestWeightedClustering:
|
| 186 |
+
@classmethod
|
| 187 |
+
def setup_class(cls):
|
| 188 |
+
global np
|
| 189 |
+
np = pytest.importorskip("numpy")
|
| 190 |
+
|
| 191 |
+
def test_clustering(self):
|
| 192 |
+
G = nx.Graph()
|
| 193 |
+
assert list(nx.clustering(G, weight="weight").values()) == []
|
| 194 |
+
assert nx.clustering(G) == {}
|
| 195 |
+
|
| 196 |
+
def test_path(self):
|
| 197 |
+
G = nx.path_graph(10)
|
| 198 |
+
assert list(nx.clustering(G, weight="weight").values()) == [
|
| 199 |
+
0,
|
| 200 |
+
0,
|
| 201 |
+
0,
|
| 202 |
+
0,
|
| 203 |
+
0,
|
| 204 |
+
0,
|
| 205 |
+
0,
|
| 206 |
+
0,
|
| 207 |
+
0,
|
| 208 |
+
0,
|
| 209 |
+
]
|
| 210 |
+
assert nx.clustering(G, weight="weight") == {
|
| 211 |
+
0: 0,
|
| 212 |
+
1: 0,
|
| 213 |
+
2: 0,
|
| 214 |
+
3: 0,
|
| 215 |
+
4: 0,
|
| 216 |
+
5: 0,
|
| 217 |
+
6: 0,
|
| 218 |
+
7: 0,
|
| 219 |
+
8: 0,
|
| 220 |
+
9: 0,
|
| 221 |
+
}
|
| 222 |
+
|
| 223 |
+
def test_cubical(self):
|
| 224 |
+
G = nx.cubical_graph()
|
| 225 |
+
assert list(nx.clustering(G, weight="weight").values()) == [
|
| 226 |
+
0,
|
| 227 |
+
0,
|
| 228 |
+
0,
|
| 229 |
+
0,
|
| 230 |
+
0,
|
| 231 |
+
0,
|
| 232 |
+
0,
|
| 233 |
+
0,
|
| 234 |
+
]
|
| 235 |
+
assert nx.clustering(G, 1) == 0
|
| 236 |
+
assert list(nx.clustering(G, [1, 2], weight="weight").values()) == [0, 0]
|
| 237 |
+
assert nx.clustering(G, 1, weight="weight") == 0
|
| 238 |
+
assert nx.clustering(G, [1, 2], weight="weight") == {1: 0, 2: 0}
|
| 239 |
+
|
| 240 |
+
def test_k5(self):
|
| 241 |
+
G = nx.complete_graph(5)
|
| 242 |
+
assert list(nx.clustering(G, weight="weight").values()) == [1, 1, 1, 1, 1]
|
| 243 |
+
assert nx.average_clustering(G, weight="weight") == 1
|
| 244 |
+
G.remove_edge(1, 2)
|
| 245 |
+
assert list(nx.clustering(G, weight="weight").values()) == [
|
| 246 |
+
5 / 6,
|
| 247 |
+
1,
|
| 248 |
+
1,
|
| 249 |
+
5 / 6,
|
| 250 |
+
5 / 6,
|
| 251 |
+
]
|
| 252 |
+
assert nx.clustering(G, [1, 4], weight="weight") == {
|
| 253 |
+
1: 1,
|
| 254 |
+
4: 0.83333333333333337,
|
| 255 |
+
}
|
| 256 |
+
|
| 257 |
+
def test_triangle_and_edge(self):
|
| 258 |
+
G = nx.cycle_graph(3)
|
| 259 |
+
G.add_edge(0, 4, weight=2)
|
| 260 |
+
assert nx.clustering(G)[0] == 1 / 3
|
| 261 |
+
np.testing.assert_allclose(nx.clustering(G, weight="weight")[0], 1 / 6)
|
| 262 |
+
np.testing.assert_allclose(nx.clustering(G, 0, weight="weight"), 1 / 6)
|
| 263 |
+
|
| 264 |
+
def test_triangle_and_signed_edge(self):
|
| 265 |
+
G = nx.cycle_graph(3)
|
| 266 |
+
G.add_edge(0, 1, weight=-1)
|
| 267 |
+
G.add_edge(3, 0, weight=0)
|
| 268 |
+
assert nx.clustering(G)[0] == 1 / 3
|
| 269 |
+
assert nx.clustering(G, weight="weight")[0] == -1 / 3
|
| 270 |
+
|
| 271 |
+
|
| 272 |
+
class TestClustering:
|
| 273 |
+
@classmethod
|
| 274 |
+
def setup_class(cls):
|
| 275 |
+
pytest.importorskip("numpy")
|
| 276 |
+
|
| 277 |
+
def test_clustering(self):
|
| 278 |
+
G = nx.Graph()
|
| 279 |
+
assert list(nx.clustering(G).values()) == []
|
| 280 |
+
assert nx.clustering(G) == {}
|
| 281 |
+
|
| 282 |
+
def test_path(self):
|
| 283 |
+
G = nx.path_graph(10)
|
| 284 |
+
assert list(nx.clustering(G).values()) == [
|
| 285 |
+
0,
|
| 286 |
+
0,
|
| 287 |
+
0,
|
| 288 |
+
0,
|
| 289 |
+
0,
|
| 290 |
+
0,
|
| 291 |
+
0,
|
| 292 |
+
0,
|
| 293 |
+
0,
|
| 294 |
+
0,
|
| 295 |
+
]
|
| 296 |
+
assert nx.clustering(G) == {
|
| 297 |
+
0: 0,
|
| 298 |
+
1: 0,
|
| 299 |
+
2: 0,
|
| 300 |
+
3: 0,
|
| 301 |
+
4: 0,
|
| 302 |
+
5: 0,
|
| 303 |
+
6: 0,
|
| 304 |
+
7: 0,
|
| 305 |
+
8: 0,
|
| 306 |
+
9: 0,
|
| 307 |
+
}
|
| 308 |
+
|
| 309 |
+
def test_cubical(self):
|
| 310 |
+
G = nx.cubical_graph()
|
| 311 |
+
assert list(nx.clustering(G).values()) == [0, 0, 0, 0, 0, 0, 0, 0]
|
| 312 |
+
assert nx.clustering(G, 1) == 0
|
| 313 |
+
assert list(nx.clustering(G, [1, 2]).values()) == [0, 0]
|
| 314 |
+
assert nx.clustering(G, 1) == 0
|
| 315 |
+
assert nx.clustering(G, [1, 2]) == {1: 0, 2: 0}
|
| 316 |
+
|
| 317 |
+
def test_k5(self):
|
| 318 |
+
G = nx.complete_graph(5)
|
| 319 |
+
assert list(nx.clustering(G).values()) == [1, 1, 1, 1, 1]
|
| 320 |
+
assert nx.average_clustering(G) == 1
|
| 321 |
+
G.remove_edge(1, 2)
|
| 322 |
+
assert list(nx.clustering(G).values()) == [
|
| 323 |
+
5 / 6,
|
| 324 |
+
1,
|
| 325 |
+
1,
|
| 326 |
+
5 / 6,
|
| 327 |
+
5 / 6,
|
| 328 |
+
]
|
| 329 |
+
assert nx.clustering(G, [1, 4]) == {1: 1, 4: 0.83333333333333337}
|
| 330 |
+
|
| 331 |
+
def test_k5_signed(self):
|
| 332 |
+
G = nx.complete_graph(5)
|
| 333 |
+
assert list(nx.clustering(G).values()) == [1, 1, 1, 1, 1]
|
| 334 |
+
assert nx.average_clustering(G) == 1
|
| 335 |
+
G.remove_edge(1, 2)
|
| 336 |
+
G.add_edge(0, 1, weight=-1)
|
| 337 |
+
assert list(nx.clustering(G, weight="weight").values()) == [
|
| 338 |
+
1 / 6,
|
| 339 |
+
-1 / 3,
|
| 340 |
+
1,
|
| 341 |
+
3 / 6,
|
| 342 |
+
3 / 6,
|
| 343 |
+
]
|
| 344 |
+
|
| 345 |
+
|
| 346 |
+
class TestTransitivity:
|
| 347 |
+
def test_transitivity(self):
|
| 348 |
+
G = nx.Graph()
|
| 349 |
+
assert nx.transitivity(G) == 0
|
| 350 |
+
|
| 351 |
+
def test_path(self):
|
| 352 |
+
G = nx.path_graph(10)
|
| 353 |
+
assert nx.transitivity(G) == 0
|
| 354 |
+
|
| 355 |
+
def test_cubical(self):
|
| 356 |
+
G = nx.cubical_graph()
|
| 357 |
+
assert nx.transitivity(G) == 0
|
| 358 |
+
|
| 359 |
+
def test_k5(self):
|
| 360 |
+
G = nx.complete_graph(5)
|
| 361 |
+
assert nx.transitivity(G) == 1
|
| 362 |
+
G.remove_edge(1, 2)
|
| 363 |
+
assert nx.transitivity(G) == 0.875
|
| 364 |
+
|
| 365 |
+
|
| 366 |
+
class TestSquareClustering:
|
| 367 |
+
def test_clustering(self):
|
| 368 |
+
G = nx.Graph()
|
| 369 |
+
assert list(nx.square_clustering(G).values()) == []
|
| 370 |
+
assert nx.square_clustering(G) == {}
|
| 371 |
+
|
| 372 |
+
def test_path(self):
|
| 373 |
+
G = nx.path_graph(10)
|
| 374 |
+
assert list(nx.square_clustering(G).values()) == [
|
| 375 |
+
0,
|
| 376 |
+
0,
|
| 377 |
+
0,
|
| 378 |
+
0,
|
| 379 |
+
0,
|
| 380 |
+
0,
|
| 381 |
+
0,
|
| 382 |
+
0,
|
| 383 |
+
0,
|
| 384 |
+
0,
|
| 385 |
+
]
|
| 386 |
+
assert nx.square_clustering(G) == {
|
| 387 |
+
0: 0,
|
| 388 |
+
1: 0,
|
| 389 |
+
2: 0,
|
| 390 |
+
3: 0,
|
| 391 |
+
4: 0,
|
| 392 |
+
5: 0,
|
| 393 |
+
6: 0,
|
| 394 |
+
7: 0,
|
| 395 |
+
8: 0,
|
| 396 |
+
9: 0,
|
| 397 |
+
}
|
| 398 |
+
|
| 399 |
+
def test_cubical(self):
|
| 400 |
+
G = nx.cubical_graph()
|
| 401 |
+
assert list(nx.square_clustering(G).values()) == [
|
| 402 |
+
1 / 3,
|
| 403 |
+
1 / 3,
|
| 404 |
+
1 / 3,
|
| 405 |
+
1 / 3,
|
| 406 |
+
1 / 3,
|
| 407 |
+
1 / 3,
|
| 408 |
+
1 / 3,
|
| 409 |
+
1 / 3,
|
| 410 |
+
]
|
| 411 |
+
assert list(nx.square_clustering(G, [1, 2]).values()) == [1 / 3, 1 / 3]
|
| 412 |
+
assert nx.square_clustering(G, [1])[1] == 1 / 3
|
| 413 |
+
assert nx.square_clustering(G, 1) == 1 / 3
|
| 414 |
+
assert nx.square_clustering(G, [1, 2]) == {1: 1 / 3, 2: 1 / 3}
|
| 415 |
+
|
| 416 |
+
def test_k5(self):
|
| 417 |
+
G = nx.complete_graph(5)
|
| 418 |
+
assert list(nx.square_clustering(G).values()) == [1, 1, 1, 1, 1]
|
| 419 |
+
|
| 420 |
+
def test_bipartite_k5(self):
|
| 421 |
+
G = nx.complete_bipartite_graph(5, 5)
|
| 422 |
+
assert list(nx.square_clustering(G).values()) == [1, 1, 1, 1, 1, 1, 1, 1, 1, 1]
|
| 423 |
+
|
| 424 |
+
def test_lind_square_clustering(self):
|
| 425 |
+
"""Test C4 for figure 1 Lind et al (2005)"""
|
| 426 |
+
G = nx.Graph(
|
| 427 |
+
[
|
| 428 |
+
(1, 2),
|
| 429 |
+
(1, 3),
|
| 430 |
+
(1, 6),
|
| 431 |
+
(1, 7),
|
| 432 |
+
(2, 4),
|
| 433 |
+
(2, 5),
|
| 434 |
+
(3, 4),
|
| 435 |
+
(3, 5),
|
| 436 |
+
(6, 7),
|
| 437 |
+
(7, 8),
|
| 438 |
+
(6, 8),
|
| 439 |
+
(7, 9),
|
| 440 |
+
(7, 10),
|
| 441 |
+
(6, 11),
|
| 442 |
+
(6, 12),
|
| 443 |
+
(2, 13),
|
| 444 |
+
(2, 14),
|
| 445 |
+
(3, 15),
|
| 446 |
+
(3, 16),
|
| 447 |
+
]
|
| 448 |
+
)
|
| 449 |
+
G1 = G.subgraph([1, 2, 3, 4, 5, 13, 14, 15, 16])
|
| 450 |
+
G2 = G.subgraph([1, 6, 7, 8, 9, 10, 11, 12])
|
| 451 |
+
assert nx.square_clustering(G, [1])[1] == 3 / 43
|
| 452 |
+
assert nx.square_clustering(G1, [1])[1] == 2 / 6
|
| 453 |
+
assert nx.square_clustering(G2, [1])[1] == 1 / 5
|
| 454 |
+
|
| 455 |
+
def test_peng_square_clustering(self):
|
| 456 |
+
"""Test eq2 for figure 1 Peng et al (2008)"""
|
| 457 |
+
G = nx.Graph([(1, 2), (1, 3), (2, 4), (3, 4), (3, 5), (3, 6)])
|
| 458 |
+
assert nx.square_clustering(G, [1])[1] == 1 / 3
|
| 459 |
+
|
| 460 |
+
def test_self_loops_square_clustering(self):
|
| 461 |
+
G = nx.path_graph(5)
|
| 462 |
+
assert nx.square_clustering(G) == {0: 0, 1: 0.0, 2: 0.0, 3: 0.0, 4: 0}
|
| 463 |
+
G.add_edges_from([(0, 0), (1, 1), (2, 2)])
|
| 464 |
+
assert nx.square_clustering(G) == {0: 1, 1: 0.5, 2: 0.2, 3: 0.0, 4: 0}
|
| 465 |
+
|
| 466 |
+
|
| 467 |
+
class TestAverageClustering:
|
| 468 |
+
@classmethod
|
| 469 |
+
def setup_class(cls):
|
| 470 |
+
pytest.importorskip("numpy")
|
| 471 |
+
|
| 472 |
+
def test_empty(self):
|
| 473 |
+
G = nx.Graph()
|
| 474 |
+
with pytest.raises(ZeroDivisionError):
|
| 475 |
+
nx.average_clustering(G)
|
| 476 |
+
|
| 477 |
+
def test_average_clustering(self):
|
| 478 |
+
G = nx.cycle_graph(3)
|
| 479 |
+
G.add_edge(2, 3)
|
| 480 |
+
assert nx.average_clustering(G) == (1 + 1 + 1 / 3) / 4
|
| 481 |
+
assert nx.average_clustering(G, count_zeros=True) == (1 + 1 + 1 / 3) / 4
|
| 482 |
+
assert nx.average_clustering(G, count_zeros=False) == (1 + 1 + 1 / 3) / 3
|
| 483 |
+
assert nx.average_clustering(G, [1, 2, 3]) == (1 + 1 / 3) / 3
|
| 484 |
+
assert nx.average_clustering(G, [1, 2, 3], count_zeros=True) == (1 + 1 / 3) / 3
|
| 485 |
+
assert nx.average_clustering(G, [1, 2, 3], count_zeros=False) == (1 + 1 / 3) / 2
|
| 486 |
+
|
| 487 |
+
def test_average_clustering_signed(self):
|
| 488 |
+
G = nx.cycle_graph(3)
|
| 489 |
+
G.add_edge(2, 3)
|
| 490 |
+
G.add_edge(0, 1, weight=-1)
|
| 491 |
+
assert nx.average_clustering(G, weight="weight") == (-1 - 1 - 1 / 3) / 4
|
| 492 |
+
assert (
|
| 493 |
+
nx.average_clustering(G, weight="weight", count_zeros=True)
|
| 494 |
+
== (-1 - 1 - 1 / 3) / 4
|
| 495 |
+
)
|
| 496 |
+
assert (
|
| 497 |
+
nx.average_clustering(G, weight="weight", count_zeros=False)
|
| 498 |
+
== (-1 - 1 - 1 / 3) / 3
|
| 499 |
+
)
|
| 500 |
+
|
| 501 |
+
|
| 502 |
+
class TestDirectedAverageClustering:
|
| 503 |
+
@classmethod
|
| 504 |
+
def setup_class(cls):
|
| 505 |
+
pytest.importorskip("numpy")
|
| 506 |
+
|
| 507 |
+
def test_empty(self):
|
| 508 |
+
G = nx.DiGraph()
|
| 509 |
+
with pytest.raises(ZeroDivisionError):
|
| 510 |
+
nx.average_clustering(G)
|
| 511 |
+
|
| 512 |
+
def test_average_clustering(self):
|
| 513 |
+
G = nx.cycle_graph(3, create_using=nx.DiGraph())
|
| 514 |
+
G.add_edge(2, 3)
|
| 515 |
+
assert nx.average_clustering(G) == (1 + 1 + 1 / 3) / 8
|
| 516 |
+
assert nx.average_clustering(G, count_zeros=True) == (1 + 1 + 1 / 3) / 8
|
| 517 |
+
assert nx.average_clustering(G, count_zeros=False) == (1 + 1 + 1 / 3) / 6
|
| 518 |
+
assert nx.average_clustering(G, [1, 2, 3]) == (1 + 1 / 3) / 6
|
| 519 |
+
assert nx.average_clustering(G, [1, 2, 3], count_zeros=True) == (1 + 1 / 3) / 6
|
| 520 |
+
assert nx.average_clustering(G, [1, 2, 3], count_zeros=False) == (1 + 1 / 3) / 4
|
| 521 |
+
|
| 522 |
+
|
| 523 |
+
class TestGeneralizedDegree:
|
| 524 |
+
def test_generalized_degree(self):
|
| 525 |
+
G = nx.Graph()
|
| 526 |
+
assert nx.generalized_degree(G) == {}
|
| 527 |
+
|
| 528 |
+
def test_path(self):
|
| 529 |
+
G = nx.path_graph(5)
|
| 530 |
+
assert nx.generalized_degree(G, 0) == {0: 1}
|
| 531 |
+
assert nx.generalized_degree(G, 1) == {0: 2}
|
| 532 |
+
|
| 533 |
+
def test_cubical(self):
|
| 534 |
+
G = nx.cubical_graph()
|
| 535 |
+
assert nx.generalized_degree(G, 0) == {0: 3}
|
| 536 |
+
|
| 537 |
+
def test_k5(self):
|
| 538 |
+
G = nx.complete_graph(5)
|
| 539 |
+
assert nx.generalized_degree(G, 0) == {3: 4}
|
| 540 |
+
G.remove_edge(0, 1)
|
| 541 |
+
assert nx.generalized_degree(G, 0) == {2: 3}
|
| 542 |
+
assert nx.generalized_degree(G, [1, 2]) == {1: {2: 3}, 2: {2: 2, 3: 2}}
|
| 543 |
+
assert nx.generalized_degree(G) == {
|
| 544 |
+
0: {2: 3},
|
| 545 |
+
1: {2: 3},
|
| 546 |
+
2: {2: 2, 3: 2},
|
| 547 |
+
3: {2: 2, 3: 2},
|
| 548 |
+
4: {2: 2, 3: 2},
|
| 549 |
+
}
|
code/LaDi-RL-old-qwen-cod/LaDi-RL-old-qwen-cod/venv/lib64/python3.10/site-packages/networkx/algorithms/tests/test_communicability.py
ADDED
|
@@ -0,0 +1,80 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
from collections import defaultdict
|
| 2 |
+
|
| 3 |
+
import pytest
|
| 4 |
+
|
| 5 |
+
pytest.importorskip("numpy")
|
| 6 |
+
pytest.importorskip("scipy")
|
| 7 |
+
|
| 8 |
+
import networkx as nx
|
| 9 |
+
from networkx.algorithms.communicability_alg import communicability, communicability_exp
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
class TestCommunicability:
|
| 13 |
+
def test_communicability(self):
|
| 14 |
+
answer = {
|
| 15 |
+
0: {0: 1.5430806348152435, 1: 1.1752011936438012},
|
| 16 |
+
1: {0: 1.1752011936438012, 1: 1.5430806348152435},
|
| 17 |
+
}
|
| 18 |
+
# answer={(0, 0): 1.5430806348152435,
|
| 19 |
+
# (0, 1): 1.1752011936438012,
|
| 20 |
+
# (1, 0): 1.1752011936438012,
|
| 21 |
+
# (1, 1): 1.5430806348152435}
|
| 22 |
+
|
| 23 |
+
result = communicability(nx.path_graph(2))
|
| 24 |
+
for k1, val in result.items():
|
| 25 |
+
for k2 in val:
|
| 26 |
+
assert answer[k1][k2] == pytest.approx(result[k1][k2], abs=1e-7)
|
| 27 |
+
|
| 28 |
+
def test_communicability2(self):
|
| 29 |
+
answer_orig = {
|
| 30 |
+
("1", "1"): 1.6445956054135658,
|
| 31 |
+
("1", "Albert"): 0.7430186221096251,
|
| 32 |
+
("1", "Aric"): 0.7430186221096251,
|
| 33 |
+
("1", "Dan"): 1.6208126320442937,
|
| 34 |
+
("1", "Franck"): 0.42639707170035257,
|
| 35 |
+
("Albert", "1"): 0.7430186221096251,
|
| 36 |
+
("Albert", "Albert"): 2.4368257358712189,
|
| 37 |
+
("Albert", "Aric"): 1.4368257358712191,
|
| 38 |
+
("Albert", "Dan"): 2.0472097037446453,
|
| 39 |
+
("Albert", "Franck"): 1.8340111678944691,
|
| 40 |
+
("Aric", "1"): 0.7430186221096251,
|
| 41 |
+
("Aric", "Albert"): 1.4368257358712191,
|
| 42 |
+
("Aric", "Aric"): 2.4368257358712193,
|
| 43 |
+
("Aric", "Dan"): 2.0472097037446457,
|
| 44 |
+
("Aric", "Franck"): 1.8340111678944691,
|
| 45 |
+
("Dan", "1"): 1.6208126320442937,
|
| 46 |
+
("Dan", "Albert"): 2.0472097037446453,
|
| 47 |
+
("Dan", "Aric"): 2.0472097037446457,
|
| 48 |
+
("Dan", "Dan"): 3.1306328496328168,
|
| 49 |
+
("Dan", "Franck"): 1.4860372442192515,
|
| 50 |
+
("Franck", "1"): 0.42639707170035257,
|
| 51 |
+
("Franck", "Albert"): 1.8340111678944691,
|
| 52 |
+
("Franck", "Aric"): 1.8340111678944691,
|
| 53 |
+
("Franck", "Dan"): 1.4860372442192515,
|
| 54 |
+
("Franck", "Franck"): 2.3876142275231915,
|
| 55 |
+
}
|
| 56 |
+
|
| 57 |
+
answer = defaultdict(dict)
|
| 58 |
+
for (k1, k2), v in answer_orig.items():
|
| 59 |
+
answer[k1][k2] = v
|
| 60 |
+
|
| 61 |
+
G1 = nx.Graph(
|
| 62 |
+
[
|
| 63 |
+
("Franck", "Aric"),
|
| 64 |
+
("Aric", "Dan"),
|
| 65 |
+
("Dan", "Albert"),
|
| 66 |
+
("Albert", "Franck"),
|
| 67 |
+
("Dan", "1"),
|
| 68 |
+
("Franck", "Albert"),
|
| 69 |
+
]
|
| 70 |
+
)
|
| 71 |
+
|
| 72 |
+
result = communicability(G1)
|
| 73 |
+
for k1, val in result.items():
|
| 74 |
+
for k2 in val:
|
| 75 |
+
assert answer[k1][k2] == pytest.approx(result[k1][k2], abs=1e-7)
|
| 76 |
+
|
| 77 |
+
result = communicability_exp(G1)
|
| 78 |
+
for k1, val in result.items():
|
| 79 |
+
for k2 in val:
|
| 80 |
+
assert answer[k1][k2] == pytest.approx(result[k1][k2], abs=1e-7)
|
code/LaDi-RL-old-qwen-cod/LaDi-RL-old-qwen-cod/venv/lib64/python3.10/site-packages/networkx/algorithms/tests/test_core.py
ADDED
|
@@ -0,0 +1,266 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
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|
|
|
|
|
|
|
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|
|
|
|
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|
|
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|
|
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|
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|
|
|
|
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|
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|
|
|
|
|
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|
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|
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|
|
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|
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|
|
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|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
|
|
|
|
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|
|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
import pytest
|
| 2 |
+
|
| 3 |
+
import networkx as nx
|
| 4 |
+
from networkx.utils import nodes_equal
|
| 5 |
+
|
| 6 |
+
|
| 7 |
+
class TestCore:
|
| 8 |
+
@classmethod
|
| 9 |
+
def setup_class(cls):
|
| 10 |
+
# G is the example graph in Figure 1 from Batagelj and
|
| 11 |
+
# Zaversnik's paper titled An O(m) Algorithm for Cores
|
| 12 |
+
# Decomposition of Networks, 2003,
|
| 13 |
+
# http://arXiv.org/abs/cs/0310049. With nodes labeled as
|
| 14 |
+
# shown, the 3-core is given by nodes 1-8, the 2-core by nodes
|
| 15 |
+
# 9-16, the 1-core by nodes 17-20 and node 21 is in the
|
| 16 |
+
# 0-core.
|
| 17 |
+
t1 = nx.convert_node_labels_to_integers(nx.tetrahedral_graph(), 1)
|
| 18 |
+
t2 = nx.convert_node_labels_to_integers(t1, 5)
|
| 19 |
+
G = nx.union(t1, t2)
|
| 20 |
+
G.add_edges_from(
|
| 21 |
+
[
|
| 22 |
+
(3, 7),
|
| 23 |
+
(2, 11),
|
| 24 |
+
(11, 5),
|
| 25 |
+
(11, 12),
|
| 26 |
+
(5, 12),
|
| 27 |
+
(12, 19),
|
| 28 |
+
(12, 18),
|
| 29 |
+
(3, 9),
|
| 30 |
+
(7, 9),
|
| 31 |
+
(7, 10),
|
| 32 |
+
(9, 10),
|
| 33 |
+
(9, 20),
|
| 34 |
+
(17, 13),
|
| 35 |
+
(13, 14),
|
| 36 |
+
(14, 15),
|
| 37 |
+
(15, 16),
|
| 38 |
+
(16, 13),
|
| 39 |
+
]
|
| 40 |
+
)
|
| 41 |
+
G.add_node(21)
|
| 42 |
+
cls.G = G
|
| 43 |
+
|
| 44 |
+
# Create the graph H resulting from the degree sequence
|
| 45 |
+
# [0, 1, 2, 2, 2, 2, 3] when using the Havel-Hakimi algorithm.
|
| 46 |
+
|
| 47 |
+
degseq = [0, 1, 2, 2, 2, 2, 3]
|
| 48 |
+
H = nx.havel_hakimi_graph(degseq)
|
| 49 |
+
mapping = {6: 0, 0: 1, 4: 3, 5: 6, 3: 4, 1: 2, 2: 5}
|
| 50 |
+
cls.H = nx.relabel_nodes(H, mapping)
|
| 51 |
+
|
| 52 |
+
def test_trivial(self):
|
| 53 |
+
"""Empty graph"""
|
| 54 |
+
G = nx.Graph()
|
| 55 |
+
assert nx.core_number(G) == {}
|
| 56 |
+
|
| 57 |
+
def test_core_number(self):
|
| 58 |
+
core = nx.core_number(self.G)
|
| 59 |
+
nodes_by_core = [sorted(n for n in core if core[n] == val) for val in range(4)]
|
| 60 |
+
assert nodes_equal(nodes_by_core[0], [21])
|
| 61 |
+
assert nodes_equal(nodes_by_core[1], [17, 18, 19, 20])
|
| 62 |
+
assert nodes_equal(nodes_by_core[2], [9, 10, 11, 12, 13, 14, 15, 16])
|
| 63 |
+
assert nodes_equal(nodes_by_core[3], [1, 2, 3, 4, 5, 6, 7, 8])
|
| 64 |
+
|
| 65 |
+
def test_core_number2(self):
|
| 66 |
+
core = nx.core_number(self.H)
|
| 67 |
+
nodes_by_core = [sorted(n for n in core if core[n] == val) for val in range(3)]
|
| 68 |
+
assert nodes_equal(nodes_by_core[0], [0])
|
| 69 |
+
assert nodes_equal(nodes_by_core[1], [1, 3])
|
| 70 |
+
assert nodes_equal(nodes_by_core[2], [2, 4, 5, 6])
|
| 71 |
+
|
| 72 |
+
def test_core_number_multigraph(self):
|
| 73 |
+
G = nx.complete_graph(3)
|
| 74 |
+
G = nx.MultiGraph(G)
|
| 75 |
+
G.add_edge(1, 2)
|
| 76 |
+
with pytest.raises(
|
| 77 |
+
nx.NetworkXNotImplemented, match="not implemented for multigraph type"
|
| 78 |
+
):
|
| 79 |
+
nx.core_number(G)
|
| 80 |
+
|
| 81 |
+
def test_core_number_self_loop(self):
|
| 82 |
+
G = nx.cycle_graph(3)
|
| 83 |
+
G.add_edge(0, 0)
|
| 84 |
+
with pytest.raises(
|
| 85 |
+
nx.NetworkXNotImplemented, match="Input graph has self loops"
|
| 86 |
+
):
|
| 87 |
+
nx.core_number(G)
|
| 88 |
+
|
| 89 |
+
def test_directed_core_number(self):
|
| 90 |
+
"""core number had a bug for directed graphs found in issue #1959"""
|
| 91 |
+
# small example where too timid edge removal can make cn[2] = 3
|
| 92 |
+
G = nx.DiGraph()
|
| 93 |
+
edges = [(1, 2), (2, 1), (2, 3), (2, 4), (3, 4), (4, 3)]
|
| 94 |
+
G.add_edges_from(edges)
|
| 95 |
+
assert nx.core_number(G) == {1: 2, 2: 2, 3: 2, 4: 2}
|
| 96 |
+
# small example where too aggressive edge removal can make cn[2] = 2
|
| 97 |
+
more_edges = [(1, 5), (3, 5), (4, 5), (3, 6), (4, 6), (5, 6)]
|
| 98 |
+
G.add_edges_from(more_edges)
|
| 99 |
+
assert nx.core_number(G) == {1: 3, 2: 3, 3: 3, 4: 3, 5: 3, 6: 3}
|
| 100 |
+
|
| 101 |
+
def test_main_core(self):
|
| 102 |
+
main_core_subgraph = nx.k_core(self.H)
|
| 103 |
+
assert sorted(main_core_subgraph.nodes()) == [2, 4, 5, 6]
|
| 104 |
+
|
| 105 |
+
def test_k_core(self):
|
| 106 |
+
# k=0
|
| 107 |
+
k_core_subgraph = nx.k_core(self.H, k=0)
|
| 108 |
+
assert sorted(k_core_subgraph.nodes()) == sorted(self.H.nodes())
|
| 109 |
+
# k=1
|
| 110 |
+
k_core_subgraph = nx.k_core(self.H, k=1)
|
| 111 |
+
assert sorted(k_core_subgraph.nodes()) == [1, 2, 3, 4, 5, 6]
|
| 112 |
+
# k = 2
|
| 113 |
+
k_core_subgraph = nx.k_core(self.H, k=2)
|
| 114 |
+
assert sorted(k_core_subgraph.nodes()) == [2, 4, 5, 6]
|
| 115 |
+
|
| 116 |
+
def test_k_core_multigraph(self):
|
| 117 |
+
core_number = nx.core_number(self.H)
|
| 118 |
+
H = nx.MultiGraph(self.H)
|
| 119 |
+
with pytest.deprecated_call():
|
| 120 |
+
nx.k_core(H, k=0, core_number=core_number)
|
| 121 |
+
|
| 122 |
+
def test_main_crust(self):
|
| 123 |
+
main_crust_subgraph = nx.k_crust(self.H)
|
| 124 |
+
assert sorted(main_crust_subgraph.nodes()) == [0, 1, 3]
|
| 125 |
+
|
| 126 |
+
def test_k_crust(self):
|
| 127 |
+
# k = 0
|
| 128 |
+
k_crust_subgraph = nx.k_crust(self.H, k=2)
|
| 129 |
+
assert sorted(k_crust_subgraph.nodes()) == sorted(self.H.nodes())
|
| 130 |
+
# k=1
|
| 131 |
+
k_crust_subgraph = nx.k_crust(self.H, k=1)
|
| 132 |
+
assert sorted(k_crust_subgraph.nodes()) == [0, 1, 3]
|
| 133 |
+
# k=2
|
| 134 |
+
k_crust_subgraph = nx.k_crust(self.H, k=0)
|
| 135 |
+
assert sorted(k_crust_subgraph.nodes()) == [0]
|
| 136 |
+
|
| 137 |
+
def test_k_crust_multigraph(self):
|
| 138 |
+
core_number = nx.core_number(self.H)
|
| 139 |
+
H = nx.MultiGraph(self.H)
|
| 140 |
+
with pytest.deprecated_call():
|
| 141 |
+
nx.k_crust(H, k=0, core_number=core_number)
|
| 142 |
+
|
| 143 |
+
def test_main_shell(self):
|
| 144 |
+
main_shell_subgraph = nx.k_shell(self.H)
|
| 145 |
+
assert sorted(main_shell_subgraph.nodes()) == [2, 4, 5, 6]
|
| 146 |
+
|
| 147 |
+
def test_k_shell(self):
|
| 148 |
+
# k=0
|
| 149 |
+
k_shell_subgraph = nx.k_shell(self.H, k=2)
|
| 150 |
+
assert sorted(k_shell_subgraph.nodes()) == [2, 4, 5, 6]
|
| 151 |
+
# k=1
|
| 152 |
+
k_shell_subgraph = nx.k_shell(self.H, k=1)
|
| 153 |
+
assert sorted(k_shell_subgraph.nodes()) == [1, 3]
|
| 154 |
+
# k=2
|
| 155 |
+
k_shell_subgraph = nx.k_shell(self.H, k=0)
|
| 156 |
+
assert sorted(k_shell_subgraph.nodes()) == [0]
|
| 157 |
+
|
| 158 |
+
def test_k_shell_multigraph(self):
|
| 159 |
+
core_number = nx.core_number(self.H)
|
| 160 |
+
H = nx.MultiGraph(self.H)
|
| 161 |
+
with pytest.deprecated_call():
|
| 162 |
+
nx.k_shell(H, k=0, core_number=core_number)
|
| 163 |
+
|
| 164 |
+
def test_k_corona(self):
|
| 165 |
+
# k=0
|
| 166 |
+
k_corona_subgraph = nx.k_corona(self.H, k=2)
|
| 167 |
+
assert sorted(k_corona_subgraph.nodes()) == [2, 4, 5, 6]
|
| 168 |
+
# k=1
|
| 169 |
+
k_corona_subgraph = nx.k_corona(self.H, k=1)
|
| 170 |
+
assert sorted(k_corona_subgraph.nodes()) == [1]
|
| 171 |
+
# k=2
|
| 172 |
+
k_corona_subgraph = nx.k_corona(self.H, k=0)
|
| 173 |
+
assert sorted(k_corona_subgraph.nodes()) == [0]
|
| 174 |
+
|
| 175 |
+
def test_k_corona_multigraph(self):
|
| 176 |
+
core_number = nx.core_number(self.H)
|
| 177 |
+
H = nx.MultiGraph(self.H)
|
| 178 |
+
with pytest.deprecated_call():
|
| 179 |
+
nx.k_corona(H, k=0, core_number=core_number)
|
| 180 |
+
|
| 181 |
+
def test_k_truss(self):
|
| 182 |
+
# k=-1
|
| 183 |
+
k_truss_subgraph = nx.k_truss(self.G, -1)
|
| 184 |
+
assert sorted(k_truss_subgraph.nodes()) == list(range(1, 21))
|
| 185 |
+
# k=0
|
| 186 |
+
k_truss_subgraph = nx.k_truss(self.G, 0)
|
| 187 |
+
assert sorted(k_truss_subgraph.nodes()) == list(range(1, 21))
|
| 188 |
+
# k=1
|
| 189 |
+
k_truss_subgraph = nx.k_truss(self.G, 1)
|
| 190 |
+
assert sorted(k_truss_subgraph.nodes()) == list(range(1, 21))
|
| 191 |
+
# k=2
|
| 192 |
+
k_truss_subgraph = nx.k_truss(self.G, 2)
|
| 193 |
+
assert sorted(k_truss_subgraph.nodes()) == list(range(1, 21))
|
| 194 |
+
# k=3
|
| 195 |
+
k_truss_subgraph = nx.k_truss(self.G, 3)
|
| 196 |
+
assert sorted(k_truss_subgraph.nodes()) == list(range(1, 13))
|
| 197 |
+
|
| 198 |
+
k_truss_subgraph = nx.k_truss(self.G, 4)
|
| 199 |
+
assert sorted(k_truss_subgraph.nodes()) == list(range(1, 9))
|
| 200 |
+
|
| 201 |
+
k_truss_subgraph = nx.k_truss(self.G, 5)
|
| 202 |
+
assert sorted(k_truss_subgraph.nodes()) == []
|
| 203 |
+
|
| 204 |
+
def test_k_truss_digraph(self):
|
| 205 |
+
G = nx.complete_graph(3)
|
| 206 |
+
G = nx.DiGraph(G)
|
| 207 |
+
G.add_edge(2, 1)
|
| 208 |
+
with pytest.raises(
|
| 209 |
+
nx.NetworkXNotImplemented, match="not implemented for directed type"
|
| 210 |
+
):
|
| 211 |
+
nx.k_truss(G, k=1)
|
| 212 |
+
|
| 213 |
+
def test_k_truss_multigraph(self):
|
| 214 |
+
G = nx.complete_graph(3)
|
| 215 |
+
G = nx.MultiGraph(G)
|
| 216 |
+
G.add_edge(1, 2)
|
| 217 |
+
with pytest.raises(
|
| 218 |
+
nx.NetworkXNotImplemented, match="not implemented for multigraph type"
|
| 219 |
+
):
|
| 220 |
+
nx.k_truss(G, k=1)
|
| 221 |
+
|
| 222 |
+
def test_k_truss_self_loop(self):
|
| 223 |
+
G = nx.cycle_graph(3)
|
| 224 |
+
G.add_edge(0, 0)
|
| 225 |
+
with pytest.raises(
|
| 226 |
+
nx.NetworkXNotImplemented, match="Input graph has self loops"
|
| 227 |
+
):
|
| 228 |
+
nx.k_truss(G, k=1)
|
| 229 |
+
|
| 230 |
+
def test_onion_layers(self):
|
| 231 |
+
layers = nx.onion_layers(self.G)
|
| 232 |
+
nodes_by_layer = [
|
| 233 |
+
sorted(n for n in layers if layers[n] == val) for val in range(1, 7)
|
| 234 |
+
]
|
| 235 |
+
assert nodes_equal(nodes_by_layer[0], [21])
|
| 236 |
+
assert nodes_equal(nodes_by_layer[1], [17, 18, 19, 20])
|
| 237 |
+
assert nodes_equal(nodes_by_layer[2], [10, 12, 13, 14, 15, 16])
|
| 238 |
+
assert nodes_equal(nodes_by_layer[3], [9, 11])
|
| 239 |
+
assert nodes_equal(nodes_by_layer[4], [1, 2, 4, 5, 6, 8])
|
| 240 |
+
assert nodes_equal(nodes_by_layer[5], [3, 7])
|
| 241 |
+
|
| 242 |
+
def test_onion_digraph(self):
|
| 243 |
+
G = nx.complete_graph(3)
|
| 244 |
+
G = nx.DiGraph(G)
|
| 245 |
+
G.add_edge(2, 1)
|
| 246 |
+
with pytest.raises(
|
| 247 |
+
nx.NetworkXNotImplemented, match="not implemented for directed type"
|
| 248 |
+
):
|
| 249 |
+
nx.onion_layers(G)
|
| 250 |
+
|
| 251 |
+
def test_onion_multigraph(self):
|
| 252 |
+
G = nx.complete_graph(3)
|
| 253 |
+
G = nx.MultiGraph(G)
|
| 254 |
+
G.add_edge(1, 2)
|
| 255 |
+
with pytest.raises(
|
| 256 |
+
nx.NetworkXNotImplemented, match="not implemented for multigraph type"
|
| 257 |
+
):
|
| 258 |
+
nx.onion_layers(G)
|
| 259 |
+
|
| 260 |
+
def test_onion_self_loop(self):
|
| 261 |
+
G = nx.cycle_graph(3)
|
| 262 |
+
G.add_edge(0, 0)
|
| 263 |
+
with pytest.raises(
|
| 264 |
+
nx.NetworkXNotImplemented, match="Input graph contains self loops"
|
| 265 |
+
):
|
| 266 |
+
nx.onion_layers(G)
|
code/LaDi-RL-old-qwen-cod/LaDi-RL-old-qwen-cod/venv/lib64/python3.10/site-packages/networkx/algorithms/tests/test_covering.py
ADDED
|
@@ -0,0 +1,85 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
import pytest
|
| 2 |
+
|
| 3 |
+
import networkx as nx
|
| 4 |
+
|
| 5 |
+
|
| 6 |
+
class TestMinEdgeCover:
|
| 7 |
+
"""Tests for :func:`networkx.algorithms.min_edge_cover`"""
|
| 8 |
+
|
| 9 |
+
def test_empty_graph(self):
|
| 10 |
+
G = nx.Graph()
|
| 11 |
+
assert nx.min_edge_cover(G) == set()
|
| 12 |
+
|
| 13 |
+
def test_graph_with_loop(self):
|
| 14 |
+
G = nx.Graph()
|
| 15 |
+
G.add_edge(0, 0)
|
| 16 |
+
assert nx.min_edge_cover(G) == {(0, 0)}
|
| 17 |
+
|
| 18 |
+
def test_graph_with_isolated_v(self):
|
| 19 |
+
G = nx.Graph()
|
| 20 |
+
G.add_node(1)
|
| 21 |
+
with pytest.raises(
|
| 22 |
+
nx.NetworkXException,
|
| 23 |
+
match="Graph has a node with no edge incident on it, so no edge cover exists.",
|
| 24 |
+
):
|
| 25 |
+
nx.min_edge_cover(G)
|
| 26 |
+
|
| 27 |
+
def test_graph_single_edge(self):
|
| 28 |
+
G = nx.Graph([(0, 1)])
|
| 29 |
+
assert nx.min_edge_cover(G) in ({(0, 1)}, {(1, 0)})
|
| 30 |
+
|
| 31 |
+
def test_graph_two_edge_path(self):
|
| 32 |
+
G = nx.path_graph(3)
|
| 33 |
+
min_cover = nx.min_edge_cover(G)
|
| 34 |
+
assert len(min_cover) == 2
|
| 35 |
+
for u, v in G.edges:
|
| 36 |
+
assert (u, v) in min_cover or (v, u) in min_cover
|
| 37 |
+
|
| 38 |
+
def test_bipartite_explicit(self):
|
| 39 |
+
G = nx.Graph()
|
| 40 |
+
G.add_nodes_from([1, 2, 3, 4], bipartite=0)
|
| 41 |
+
G.add_nodes_from(["a", "b", "c"], bipartite=1)
|
| 42 |
+
G.add_edges_from([(1, "a"), (1, "b"), (2, "b"), (2, "c"), (3, "c"), (4, "a")])
|
| 43 |
+
# Use bipartite method by prescribing the algorithm
|
| 44 |
+
min_cover = nx.min_edge_cover(
|
| 45 |
+
G, nx.algorithms.bipartite.matching.eppstein_matching
|
| 46 |
+
)
|
| 47 |
+
assert nx.is_edge_cover(G, min_cover)
|
| 48 |
+
assert len(min_cover) == 8
|
| 49 |
+
# Use the default method which is not specialized for bipartite
|
| 50 |
+
min_cover2 = nx.min_edge_cover(G)
|
| 51 |
+
assert nx.is_edge_cover(G, min_cover2)
|
| 52 |
+
assert len(min_cover2) == 4
|
| 53 |
+
|
| 54 |
+
def test_complete_graph_even(self):
|
| 55 |
+
G = nx.complete_graph(10)
|
| 56 |
+
min_cover = nx.min_edge_cover(G)
|
| 57 |
+
assert nx.is_edge_cover(G, min_cover)
|
| 58 |
+
assert len(min_cover) == 5
|
| 59 |
+
|
| 60 |
+
def test_complete_graph_odd(self):
|
| 61 |
+
G = nx.complete_graph(11)
|
| 62 |
+
min_cover = nx.min_edge_cover(G)
|
| 63 |
+
assert nx.is_edge_cover(G, min_cover)
|
| 64 |
+
assert len(min_cover) == 6
|
| 65 |
+
|
| 66 |
+
|
| 67 |
+
class TestIsEdgeCover:
|
| 68 |
+
"""Tests for :func:`networkx.algorithms.is_edge_cover`"""
|
| 69 |
+
|
| 70 |
+
def test_empty_graph(self):
|
| 71 |
+
G = nx.Graph()
|
| 72 |
+
assert nx.is_edge_cover(G, set())
|
| 73 |
+
|
| 74 |
+
def test_graph_with_loop(self):
|
| 75 |
+
G = nx.Graph()
|
| 76 |
+
G.add_edge(1, 1)
|
| 77 |
+
assert nx.is_edge_cover(G, {(1, 1)})
|
| 78 |
+
|
| 79 |
+
def test_graph_single_edge(self):
|
| 80 |
+
G = nx.Graph()
|
| 81 |
+
G.add_edge(0, 1)
|
| 82 |
+
assert nx.is_edge_cover(G, {(0, 0), (1, 1)})
|
| 83 |
+
assert nx.is_edge_cover(G, {(0, 1), (1, 0)})
|
| 84 |
+
assert nx.is_edge_cover(G, {(0, 1)})
|
| 85 |
+
assert not nx.is_edge_cover(G, {(0, 0)})
|
code/LaDi-RL-old-qwen-cod/LaDi-RL-old-qwen-cod/venv/lib64/python3.10/site-packages/networkx/algorithms/tests/test_cuts.py
ADDED
|
@@ -0,0 +1,171 @@
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|
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|
|
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|
|
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|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
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|
|
|
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|
|
|
|
|
|
|
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|
|
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|
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|
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|
|
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|
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|
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|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
"""Unit tests for the :mod:`networkx.algorithms.cuts` module."""
|
| 2 |
+
|
| 3 |
+
import networkx as nx
|
| 4 |
+
|
| 5 |
+
|
| 6 |
+
class TestCutSize:
|
| 7 |
+
"""Unit tests for the :func:`~networkx.cut_size` function."""
|
| 8 |
+
|
| 9 |
+
def test_symmetric(self):
|
| 10 |
+
"""Tests that the cut size is symmetric."""
|
| 11 |
+
G = nx.barbell_graph(3, 0)
|
| 12 |
+
S = {0, 1, 4}
|
| 13 |
+
T = {2, 3, 5}
|
| 14 |
+
assert nx.cut_size(G, S, T) == 4
|
| 15 |
+
assert nx.cut_size(G, T, S) == 4
|
| 16 |
+
|
| 17 |
+
def test_single_edge(self):
|
| 18 |
+
"""Tests for a cut of a single edge."""
|
| 19 |
+
G = nx.barbell_graph(3, 0)
|
| 20 |
+
S = {0, 1, 2}
|
| 21 |
+
T = {3, 4, 5}
|
| 22 |
+
assert nx.cut_size(G, S, T) == 1
|
| 23 |
+
assert nx.cut_size(G, T, S) == 1
|
| 24 |
+
|
| 25 |
+
def test_directed(self):
|
| 26 |
+
"""Tests that each directed edge is counted once in the cut."""
|
| 27 |
+
G = nx.barbell_graph(3, 0).to_directed()
|
| 28 |
+
S = {0, 1, 2}
|
| 29 |
+
T = {3, 4, 5}
|
| 30 |
+
assert nx.cut_size(G, S, T) == 2
|
| 31 |
+
assert nx.cut_size(G, T, S) == 2
|
| 32 |
+
|
| 33 |
+
def test_directed_symmetric(self):
|
| 34 |
+
"""Tests that a cut in a directed graph is symmetric."""
|
| 35 |
+
G = nx.barbell_graph(3, 0).to_directed()
|
| 36 |
+
S = {0, 1, 4}
|
| 37 |
+
T = {2, 3, 5}
|
| 38 |
+
assert nx.cut_size(G, S, T) == 8
|
| 39 |
+
assert nx.cut_size(G, T, S) == 8
|
| 40 |
+
|
| 41 |
+
def test_multigraph(self):
|
| 42 |
+
"""Tests that parallel edges are each counted for a cut."""
|
| 43 |
+
G = nx.MultiGraph(["ab", "ab"])
|
| 44 |
+
assert nx.cut_size(G, {"a"}, {"b"}) == 2
|
| 45 |
+
|
| 46 |
+
|
| 47 |
+
class TestVolume:
|
| 48 |
+
"""Unit tests for the :func:`~networkx.volume` function."""
|
| 49 |
+
|
| 50 |
+
def test_graph(self):
|
| 51 |
+
G = nx.cycle_graph(4)
|
| 52 |
+
assert nx.volume(G, {0, 1}) == 4
|
| 53 |
+
|
| 54 |
+
def test_digraph(self):
|
| 55 |
+
G = nx.DiGraph([(0, 1), (1, 2), (2, 3), (3, 0)])
|
| 56 |
+
assert nx.volume(G, {0, 1}) == 2
|
| 57 |
+
|
| 58 |
+
def test_multigraph(self):
|
| 59 |
+
edges = list(nx.cycle_graph(4).edges())
|
| 60 |
+
G = nx.MultiGraph(edges * 2)
|
| 61 |
+
assert nx.volume(G, {0, 1}) == 8
|
| 62 |
+
|
| 63 |
+
def test_multidigraph(self):
|
| 64 |
+
edges = [(0, 1), (1, 2), (2, 3), (3, 0)]
|
| 65 |
+
G = nx.MultiDiGraph(edges * 2)
|
| 66 |
+
assert nx.volume(G, {0, 1}) == 4
|
| 67 |
+
|
| 68 |
+
def test_barbell(self):
|
| 69 |
+
G = nx.barbell_graph(3, 0)
|
| 70 |
+
assert nx.volume(G, {0, 1, 2}) == 7
|
| 71 |
+
assert nx.volume(G, {3, 4, 5}) == 7
|
| 72 |
+
|
| 73 |
+
|
| 74 |
+
class TestNormalizedCutSize:
|
| 75 |
+
"""Unit tests for the :func:`~networkx.normalized_cut_size` function."""
|
| 76 |
+
|
| 77 |
+
def test_graph(self):
|
| 78 |
+
G = nx.path_graph(4)
|
| 79 |
+
S = {1, 2}
|
| 80 |
+
T = set(G) - S
|
| 81 |
+
size = nx.normalized_cut_size(G, S, T)
|
| 82 |
+
# The cut looks like this: o-{-o--o-}-o
|
| 83 |
+
expected = 2 * ((1 / 4) + (1 / 2))
|
| 84 |
+
assert expected == size
|
| 85 |
+
# Test with no input T
|
| 86 |
+
assert expected == nx.normalized_cut_size(G, S)
|
| 87 |
+
|
| 88 |
+
def test_directed(self):
|
| 89 |
+
G = nx.DiGraph([(0, 1), (1, 2), (2, 3)])
|
| 90 |
+
S = {1, 2}
|
| 91 |
+
T = set(G) - S
|
| 92 |
+
size = nx.normalized_cut_size(G, S, T)
|
| 93 |
+
# The cut looks like this: o-{->o-->o-}->o
|
| 94 |
+
expected = 2 * ((1 / 2) + (1 / 1))
|
| 95 |
+
assert expected == size
|
| 96 |
+
# Test with no input T
|
| 97 |
+
assert expected == nx.normalized_cut_size(G, S)
|
| 98 |
+
|
| 99 |
+
|
| 100 |
+
class TestConductance:
|
| 101 |
+
"""Unit tests for the :func:`~networkx.conductance` function."""
|
| 102 |
+
|
| 103 |
+
def test_graph(self):
|
| 104 |
+
G = nx.barbell_graph(5, 0)
|
| 105 |
+
# Consider the singleton sets containing the "bridge" nodes.
|
| 106 |
+
# There is only one cut edge, and each set has volume five.
|
| 107 |
+
S = {4}
|
| 108 |
+
T = {5}
|
| 109 |
+
conductance = nx.conductance(G, S, T)
|
| 110 |
+
expected = 1 / 5
|
| 111 |
+
assert expected == conductance
|
| 112 |
+
# Test with no input T
|
| 113 |
+
G2 = nx.barbell_graph(3, 0)
|
| 114 |
+
# There is only one cut edge, and each set has volume seven.
|
| 115 |
+
S2 = {0, 1, 2}
|
| 116 |
+
assert nx.conductance(G2, S2) == 1 / 7
|
| 117 |
+
|
| 118 |
+
|
| 119 |
+
class TestEdgeExpansion:
|
| 120 |
+
"""Unit tests for the :func:`~networkx.edge_expansion` function."""
|
| 121 |
+
|
| 122 |
+
def test_graph(self):
|
| 123 |
+
G = nx.barbell_graph(5, 0)
|
| 124 |
+
S = set(range(5))
|
| 125 |
+
T = set(G) - S
|
| 126 |
+
expansion = nx.edge_expansion(G, S, T)
|
| 127 |
+
expected = 1 / 5
|
| 128 |
+
assert expected == expansion
|
| 129 |
+
# Test with no input T
|
| 130 |
+
assert expected == nx.edge_expansion(G, S)
|
| 131 |
+
|
| 132 |
+
|
| 133 |
+
class TestNodeExpansion:
|
| 134 |
+
"""Unit tests for the :func:`~networkx.node_expansion` function."""
|
| 135 |
+
|
| 136 |
+
def test_graph(self):
|
| 137 |
+
G = nx.path_graph(8)
|
| 138 |
+
S = {3, 4, 5}
|
| 139 |
+
expansion = nx.node_expansion(G, S)
|
| 140 |
+
# The neighborhood of S has cardinality five, and S has
|
| 141 |
+
# cardinality three.
|
| 142 |
+
expected = 5 / 3
|
| 143 |
+
assert expected == expansion
|
| 144 |
+
|
| 145 |
+
|
| 146 |
+
class TestBoundaryExpansion:
|
| 147 |
+
"""Unit tests for the :func:`~networkx.boundary_expansion` function."""
|
| 148 |
+
|
| 149 |
+
def test_graph(self):
|
| 150 |
+
G = nx.complete_graph(10)
|
| 151 |
+
S = set(range(4))
|
| 152 |
+
expansion = nx.boundary_expansion(G, S)
|
| 153 |
+
# The node boundary of S has cardinality six, and S has
|
| 154 |
+
# cardinality three.
|
| 155 |
+
expected = 6 / 4
|
| 156 |
+
assert expected == expansion
|
| 157 |
+
|
| 158 |
+
|
| 159 |
+
class TestMixingExpansion:
|
| 160 |
+
"""Unit tests for the :func:`~networkx.mixing_expansion` function."""
|
| 161 |
+
|
| 162 |
+
def test_graph(self):
|
| 163 |
+
G = nx.barbell_graph(5, 0)
|
| 164 |
+
S = set(range(5))
|
| 165 |
+
T = set(G) - S
|
| 166 |
+
expansion = nx.mixing_expansion(G, S, T)
|
| 167 |
+
# There is one cut edge, and the total number of edges in the
|
| 168 |
+
# graph is twice the total number of edges in a clique of size
|
| 169 |
+
# five, plus one more for the bridge.
|
| 170 |
+
expected = 1 / (2 * (5 * 4 + 1))
|
| 171 |
+
assert expected == expansion
|
code/LaDi-RL-old-qwen-cod/LaDi-RL-old-qwen-cod/venv/lib64/python3.10/site-packages/networkx/algorithms/tests/test_cycles.py
ADDED
|
@@ -0,0 +1,974 @@
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|
| 1 |
+
from itertools import chain, islice, tee
|
| 2 |
+
from math import inf
|
| 3 |
+
from random import shuffle
|
| 4 |
+
|
| 5 |
+
import pytest
|
| 6 |
+
|
| 7 |
+
import networkx as nx
|
| 8 |
+
from networkx.algorithms.traversal.edgedfs import FORWARD, REVERSE
|
| 9 |
+
|
| 10 |
+
|
| 11 |
+
def check_independent(basis):
|
| 12 |
+
if len(basis) == 0:
|
| 13 |
+
return
|
| 14 |
+
|
| 15 |
+
np = pytest.importorskip("numpy")
|
| 16 |
+
sp = pytest.importorskip("scipy") # Required by incidence_matrix
|
| 17 |
+
|
| 18 |
+
H = nx.Graph()
|
| 19 |
+
for b in basis:
|
| 20 |
+
nx.add_cycle(H, b)
|
| 21 |
+
inc = nx.incidence_matrix(H, oriented=True)
|
| 22 |
+
rank = np.linalg.matrix_rank(inc.toarray(), tol=None, hermitian=False)
|
| 23 |
+
assert inc.shape[1] - rank == len(basis)
|
| 24 |
+
|
| 25 |
+
|
| 26 |
+
class TestCycles:
|
| 27 |
+
@classmethod
|
| 28 |
+
def setup_class(cls):
|
| 29 |
+
G = nx.Graph()
|
| 30 |
+
nx.add_cycle(G, [0, 1, 2, 3])
|
| 31 |
+
nx.add_cycle(G, [0, 3, 4, 5])
|
| 32 |
+
nx.add_cycle(G, [0, 1, 6, 7, 8])
|
| 33 |
+
G.add_edge(8, 9)
|
| 34 |
+
cls.G = G
|
| 35 |
+
|
| 36 |
+
def is_cyclic_permutation(self, a, b):
|
| 37 |
+
n = len(a)
|
| 38 |
+
if len(b) != n:
|
| 39 |
+
return False
|
| 40 |
+
l = a + a
|
| 41 |
+
return any(l[i : i + n] == b for i in range(n))
|
| 42 |
+
|
| 43 |
+
def test_cycle_basis(self):
|
| 44 |
+
G = self.G
|
| 45 |
+
cy = nx.cycle_basis(G, 0)
|
| 46 |
+
sort_cy = sorted(sorted(c) for c in cy)
|
| 47 |
+
assert sort_cy == [[0, 1, 2, 3], [0, 1, 6, 7, 8], [0, 3, 4, 5]]
|
| 48 |
+
cy = nx.cycle_basis(G, 1)
|
| 49 |
+
sort_cy = sorted(sorted(c) for c in cy)
|
| 50 |
+
assert sort_cy == [[0, 1, 2, 3], [0, 1, 6, 7, 8], [0, 3, 4, 5]]
|
| 51 |
+
cy = nx.cycle_basis(G, 9)
|
| 52 |
+
sort_cy = sorted(sorted(c) for c in cy)
|
| 53 |
+
assert sort_cy == [[0, 1, 2, 3], [0, 1, 6, 7, 8], [0, 3, 4, 5]]
|
| 54 |
+
# test disconnected graphs
|
| 55 |
+
nx.add_cycle(G, "ABC")
|
| 56 |
+
cy = nx.cycle_basis(G, 9)
|
| 57 |
+
sort_cy = sorted(sorted(c) for c in cy[:-1]) + [sorted(cy[-1])]
|
| 58 |
+
assert sort_cy == [[0, 1, 2, 3], [0, 1, 6, 7, 8], [0, 3, 4, 5], ["A", "B", "C"]]
|
| 59 |
+
|
| 60 |
+
def test_cycle_basis2(self):
|
| 61 |
+
with pytest.raises(nx.NetworkXNotImplemented):
|
| 62 |
+
G = nx.DiGraph()
|
| 63 |
+
cy = nx.cycle_basis(G, 0)
|
| 64 |
+
|
| 65 |
+
def test_cycle_basis3(self):
|
| 66 |
+
with pytest.raises(nx.NetworkXNotImplemented):
|
| 67 |
+
G = nx.MultiGraph()
|
| 68 |
+
cy = nx.cycle_basis(G, 0)
|
| 69 |
+
|
| 70 |
+
def test_cycle_basis_ordered(self):
|
| 71 |
+
# see gh-6654 replace sets with (ordered) dicts
|
| 72 |
+
G = nx.cycle_graph(5)
|
| 73 |
+
G.update(nx.cycle_graph(range(3, 8)))
|
| 74 |
+
cbG = nx.cycle_basis(G)
|
| 75 |
+
|
| 76 |
+
perm = {1: 0, 0: 1} # switch 0 and 1
|
| 77 |
+
H = nx.relabel_nodes(G, perm)
|
| 78 |
+
cbH = [[perm.get(n, n) for n in cyc] for cyc in nx.cycle_basis(H)]
|
| 79 |
+
assert cbG == cbH
|
| 80 |
+
|
| 81 |
+
def test_cycle_basis_self_loop(self):
|
| 82 |
+
"""Tests the function for graphs with self loops"""
|
| 83 |
+
G = nx.Graph()
|
| 84 |
+
nx.add_cycle(G, [0, 1, 2, 3])
|
| 85 |
+
nx.add_cycle(G, [0, 0, 6, 2])
|
| 86 |
+
cy = nx.cycle_basis(G)
|
| 87 |
+
sort_cy = sorted(sorted(c) for c in cy)
|
| 88 |
+
assert sort_cy == [[0], [0, 1, 2], [0, 2, 3], [0, 2, 6]]
|
| 89 |
+
|
| 90 |
+
def test_simple_cycles(self):
|
| 91 |
+
edges = [(0, 0), (0, 1), (0, 2), (1, 2), (2, 0), (2, 1), (2, 2)]
|
| 92 |
+
G = nx.DiGraph(edges)
|
| 93 |
+
cc = sorted(nx.simple_cycles(G))
|
| 94 |
+
ca = [[0], [0, 1, 2], [0, 2], [1, 2], [2]]
|
| 95 |
+
assert len(cc) == len(ca)
|
| 96 |
+
for c in cc:
|
| 97 |
+
assert any(self.is_cyclic_permutation(c, rc) for rc in ca)
|
| 98 |
+
|
| 99 |
+
def test_simple_cycles_singleton(self):
|
| 100 |
+
G = nx.Graph([(0, 0)]) # self-loop
|
| 101 |
+
assert list(nx.simple_cycles(G)) == [[0]]
|
| 102 |
+
|
| 103 |
+
def test_unsortable(self):
|
| 104 |
+
# this test ensures that graphs whose nodes without an intrinsic
|
| 105 |
+
# ordering do not cause issues
|
| 106 |
+
G = nx.DiGraph()
|
| 107 |
+
nx.add_cycle(G, ["a", 1])
|
| 108 |
+
c = list(nx.simple_cycles(G))
|
| 109 |
+
assert len(c) == 1
|
| 110 |
+
|
| 111 |
+
def test_simple_cycles_small(self):
|
| 112 |
+
G = nx.DiGraph()
|
| 113 |
+
nx.add_cycle(G, [1, 2, 3])
|
| 114 |
+
c = sorted(nx.simple_cycles(G))
|
| 115 |
+
assert len(c) == 1
|
| 116 |
+
assert self.is_cyclic_permutation(c[0], [1, 2, 3])
|
| 117 |
+
nx.add_cycle(G, [10, 20, 30])
|
| 118 |
+
cc = sorted(nx.simple_cycles(G))
|
| 119 |
+
assert len(cc) == 2
|
| 120 |
+
ca = [[1, 2, 3], [10, 20, 30]]
|
| 121 |
+
for c in cc:
|
| 122 |
+
assert any(self.is_cyclic_permutation(c, rc) for rc in ca)
|
| 123 |
+
|
| 124 |
+
def test_simple_cycles_empty(self):
|
| 125 |
+
G = nx.DiGraph()
|
| 126 |
+
assert list(nx.simple_cycles(G)) == []
|
| 127 |
+
|
| 128 |
+
def worst_case_graph(self, k):
|
| 129 |
+
# see figure 1 in Johnson's paper
|
| 130 |
+
# this graph has exactly 3k simple cycles
|
| 131 |
+
G = nx.DiGraph()
|
| 132 |
+
for n in range(2, k + 2):
|
| 133 |
+
G.add_edge(1, n)
|
| 134 |
+
G.add_edge(n, k + 2)
|
| 135 |
+
G.add_edge(2 * k + 1, 1)
|
| 136 |
+
for n in range(k + 2, 2 * k + 2):
|
| 137 |
+
G.add_edge(n, 2 * k + 2)
|
| 138 |
+
G.add_edge(n, n + 1)
|
| 139 |
+
G.add_edge(2 * k + 3, k + 2)
|
| 140 |
+
for n in range(2 * k + 3, 3 * k + 3):
|
| 141 |
+
G.add_edge(2 * k + 2, n)
|
| 142 |
+
G.add_edge(n, 3 * k + 3)
|
| 143 |
+
G.add_edge(3 * k + 3, 2 * k + 2)
|
| 144 |
+
return G
|
| 145 |
+
|
| 146 |
+
def test_worst_case_graph(self):
|
| 147 |
+
# see figure 1 in Johnson's paper
|
| 148 |
+
for k in range(3, 10):
|
| 149 |
+
G = self.worst_case_graph(k)
|
| 150 |
+
l = len(list(nx.simple_cycles(G)))
|
| 151 |
+
assert l == 3 * k
|
| 152 |
+
|
| 153 |
+
def test_recursive_simple_and_not(self):
|
| 154 |
+
for k in range(2, 10):
|
| 155 |
+
G = self.worst_case_graph(k)
|
| 156 |
+
cc = sorted(nx.simple_cycles(G))
|
| 157 |
+
rcc = sorted(nx.recursive_simple_cycles(G))
|
| 158 |
+
assert len(cc) == len(rcc)
|
| 159 |
+
for c in cc:
|
| 160 |
+
assert any(self.is_cyclic_permutation(c, r) for r in rcc)
|
| 161 |
+
for rc in rcc:
|
| 162 |
+
assert any(self.is_cyclic_permutation(rc, c) for c in cc)
|
| 163 |
+
|
| 164 |
+
def test_simple_graph_with_reported_bug(self):
|
| 165 |
+
G = nx.DiGraph()
|
| 166 |
+
edges = [
|
| 167 |
+
(0, 2),
|
| 168 |
+
(0, 3),
|
| 169 |
+
(1, 0),
|
| 170 |
+
(1, 3),
|
| 171 |
+
(2, 1),
|
| 172 |
+
(2, 4),
|
| 173 |
+
(3, 2),
|
| 174 |
+
(3, 4),
|
| 175 |
+
(4, 0),
|
| 176 |
+
(4, 1),
|
| 177 |
+
(4, 5),
|
| 178 |
+
(5, 0),
|
| 179 |
+
(5, 1),
|
| 180 |
+
(5, 2),
|
| 181 |
+
(5, 3),
|
| 182 |
+
]
|
| 183 |
+
G.add_edges_from(edges)
|
| 184 |
+
cc = sorted(nx.simple_cycles(G))
|
| 185 |
+
assert len(cc) == 26
|
| 186 |
+
rcc = sorted(nx.recursive_simple_cycles(G))
|
| 187 |
+
assert len(cc) == len(rcc)
|
| 188 |
+
for c in cc:
|
| 189 |
+
assert any(self.is_cyclic_permutation(c, rc) for rc in rcc)
|
| 190 |
+
for rc in rcc:
|
| 191 |
+
assert any(self.is_cyclic_permutation(rc, c) for c in cc)
|
| 192 |
+
|
| 193 |
+
|
| 194 |
+
def pairwise(iterable):
|
| 195 |
+
a, b = tee(iterable)
|
| 196 |
+
next(b, None)
|
| 197 |
+
return zip(a, b)
|
| 198 |
+
|
| 199 |
+
|
| 200 |
+
def cycle_edges(c):
|
| 201 |
+
return pairwise(chain(c, islice(c, 1)))
|
| 202 |
+
|
| 203 |
+
|
| 204 |
+
def directed_cycle_edgeset(c):
|
| 205 |
+
return frozenset(cycle_edges(c))
|
| 206 |
+
|
| 207 |
+
|
| 208 |
+
def undirected_cycle_edgeset(c):
|
| 209 |
+
if len(c) == 1:
|
| 210 |
+
return frozenset(cycle_edges(c))
|
| 211 |
+
return frozenset(map(frozenset, cycle_edges(c)))
|
| 212 |
+
|
| 213 |
+
|
| 214 |
+
def multigraph_cycle_edgeset(c):
|
| 215 |
+
if len(c) <= 2:
|
| 216 |
+
return frozenset(cycle_edges(c))
|
| 217 |
+
else:
|
| 218 |
+
return frozenset(map(frozenset, cycle_edges(c)))
|
| 219 |
+
|
| 220 |
+
|
| 221 |
+
class TestCycleEnumeration:
|
| 222 |
+
@staticmethod
|
| 223 |
+
def K(n):
|
| 224 |
+
return nx.complete_graph(n)
|
| 225 |
+
|
| 226 |
+
@staticmethod
|
| 227 |
+
def D(n):
|
| 228 |
+
return nx.complete_graph(n).to_directed()
|
| 229 |
+
|
| 230 |
+
@staticmethod
|
| 231 |
+
def edgeset_function(g):
|
| 232 |
+
if g.is_directed():
|
| 233 |
+
return directed_cycle_edgeset
|
| 234 |
+
elif g.is_multigraph():
|
| 235 |
+
return multigraph_cycle_edgeset
|
| 236 |
+
else:
|
| 237 |
+
return undirected_cycle_edgeset
|
| 238 |
+
|
| 239 |
+
def check_cycle(self, g, c, es, cache, source, original_c, length_bound, chordless):
|
| 240 |
+
if length_bound is not None and len(c) > length_bound:
|
| 241 |
+
raise RuntimeError(
|
| 242 |
+
f"computed cycle {original_c} exceeds length bound {length_bound}"
|
| 243 |
+
)
|
| 244 |
+
if source == "computed":
|
| 245 |
+
if es in cache:
|
| 246 |
+
raise RuntimeError(
|
| 247 |
+
f"computed cycle {original_c} has already been found!"
|
| 248 |
+
)
|
| 249 |
+
else:
|
| 250 |
+
cache[es] = tuple(original_c)
|
| 251 |
+
else:
|
| 252 |
+
if es in cache:
|
| 253 |
+
cache.pop(es)
|
| 254 |
+
else:
|
| 255 |
+
raise RuntimeError(f"expected cycle {original_c} was not computed")
|
| 256 |
+
|
| 257 |
+
if not all(g.has_edge(*e) for e in es):
|
| 258 |
+
raise RuntimeError(
|
| 259 |
+
f"{source} claimed cycle {original_c} is not a cycle of g"
|
| 260 |
+
)
|
| 261 |
+
if chordless and len(g.subgraph(c).edges) > len(c):
|
| 262 |
+
raise RuntimeError(f"{source} cycle {original_c} is not chordless")
|
| 263 |
+
|
| 264 |
+
def check_cycle_algorithm(
|
| 265 |
+
self,
|
| 266 |
+
g,
|
| 267 |
+
expected_cycles,
|
| 268 |
+
length_bound=None,
|
| 269 |
+
chordless=False,
|
| 270 |
+
algorithm=None,
|
| 271 |
+
):
|
| 272 |
+
if algorithm is None:
|
| 273 |
+
algorithm = nx.chordless_cycles if chordless else nx.simple_cycles
|
| 274 |
+
|
| 275 |
+
# note: we shuffle the labels of g to rule out accidentally-correct
|
| 276 |
+
# behavior which occurred during the development of chordless cycle
|
| 277 |
+
# enumeration algorithms
|
| 278 |
+
|
| 279 |
+
relabel = list(range(len(g)))
|
| 280 |
+
shuffle(relabel)
|
| 281 |
+
label = dict(zip(g, relabel))
|
| 282 |
+
unlabel = dict(zip(relabel, g))
|
| 283 |
+
h = nx.relabel_nodes(g, label, copy=True)
|
| 284 |
+
|
| 285 |
+
edgeset = self.edgeset_function(h)
|
| 286 |
+
|
| 287 |
+
params = {}
|
| 288 |
+
if length_bound is not None:
|
| 289 |
+
params["length_bound"] = length_bound
|
| 290 |
+
|
| 291 |
+
cycle_cache = {}
|
| 292 |
+
for c in algorithm(h, **params):
|
| 293 |
+
original_c = [unlabel[x] for x in c]
|
| 294 |
+
es = edgeset(c)
|
| 295 |
+
self.check_cycle(
|
| 296 |
+
h, c, es, cycle_cache, "computed", original_c, length_bound, chordless
|
| 297 |
+
)
|
| 298 |
+
|
| 299 |
+
if isinstance(expected_cycles, int):
|
| 300 |
+
if len(cycle_cache) != expected_cycles:
|
| 301 |
+
raise RuntimeError(
|
| 302 |
+
f"expected {expected_cycles} cycles, got {len(cycle_cache)}"
|
| 303 |
+
)
|
| 304 |
+
return
|
| 305 |
+
for original_c in expected_cycles:
|
| 306 |
+
c = [label[x] for x in original_c]
|
| 307 |
+
es = edgeset(c)
|
| 308 |
+
self.check_cycle(
|
| 309 |
+
h, c, es, cycle_cache, "expected", original_c, length_bound, chordless
|
| 310 |
+
)
|
| 311 |
+
|
| 312 |
+
if len(cycle_cache):
|
| 313 |
+
for c in cycle_cache.values():
|
| 314 |
+
raise RuntimeError(
|
| 315 |
+
f"computed cycle {c} is valid but not in the expected cycle set!"
|
| 316 |
+
)
|
| 317 |
+
|
| 318 |
+
def check_cycle_enumeration_integer_sequence(
|
| 319 |
+
self,
|
| 320 |
+
g_family,
|
| 321 |
+
cycle_counts,
|
| 322 |
+
length_bound=None,
|
| 323 |
+
chordless=False,
|
| 324 |
+
algorithm=None,
|
| 325 |
+
):
|
| 326 |
+
for g, num_cycles in zip(g_family, cycle_counts):
|
| 327 |
+
self.check_cycle_algorithm(
|
| 328 |
+
g,
|
| 329 |
+
num_cycles,
|
| 330 |
+
length_bound=length_bound,
|
| 331 |
+
chordless=chordless,
|
| 332 |
+
algorithm=algorithm,
|
| 333 |
+
)
|
| 334 |
+
|
| 335 |
+
def test_directed_chordless_cycle_digons(self):
|
| 336 |
+
g = nx.DiGraph()
|
| 337 |
+
nx.add_cycle(g, range(5))
|
| 338 |
+
nx.add_cycle(g, range(5)[::-1])
|
| 339 |
+
g.add_edge(0, 0)
|
| 340 |
+
expected_cycles = [(0,), (1, 2), (2, 3), (3, 4)]
|
| 341 |
+
self.check_cycle_algorithm(g, expected_cycles, chordless=True)
|
| 342 |
+
|
| 343 |
+
self.check_cycle_algorithm(g, expected_cycles, chordless=True, length_bound=2)
|
| 344 |
+
|
| 345 |
+
expected_cycles = [c for c in expected_cycles if len(c) < 2]
|
| 346 |
+
self.check_cycle_algorithm(g, expected_cycles, chordless=True, length_bound=1)
|
| 347 |
+
|
| 348 |
+
def test_directed_chordless_cycle_undirected(self):
|
| 349 |
+
g = nx.DiGraph([(1, 2), (2, 3), (3, 4), (4, 5), (5, 0), (5, 1), (0, 2)])
|
| 350 |
+
expected_cycles = [(0, 2, 3, 4, 5), (1, 2, 3, 4, 5)]
|
| 351 |
+
self.check_cycle_algorithm(g, expected_cycles, chordless=True)
|
| 352 |
+
|
| 353 |
+
g = nx.DiGraph()
|
| 354 |
+
nx.add_cycle(g, range(5))
|
| 355 |
+
nx.add_cycle(g, range(4, 9))
|
| 356 |
+
g.add_edge(7, 3)
|
| 357 |
+
expected_cycles = [(0, 1, 2, 3, 4), (3, 4, 5, 6, 7), (4, 5, 6, 7, 8)]
|
| 358 |
+
self.check_cycle_algorithm(g, expected_cycles, chordless=True)
|
| 359 |
+
|
| 360 |
+
g.add_edge(3, 7)
|
| 361 |
+
expected_cycles = [(0, 1, 2, 3, 4), (3, 7), (4, 5, 6, 7, 8)]
|
| 362 |
+
self.check_cycle_algorithm(g, expected_cycles, chordless=True)
|
| 363 |
+
|
| 364 |
+
expected_cycles = [(3, 7)]
|
| 365 |
+
self.check_cycle_algorithm(g, expected_cycles, chordless=True, length_bound=4)
|
| 366 |
+
|
| 367 |
+
g.remove_edge(7, 3)
|
| 368 |
+
expected_cycles = [(0, 1, 2, 3, 4), (4, 5, 6, 7, 8)]
|
| 369 |
+
self.check_cycle_algorithm(g, expected_cycles, chordless=True)
|
| 370 |
+
|
| 371 |
+
g = nx.DiGraph((i, j) for i in range(10) for j in range(i))
|
| 372 |
+
expected_cycles = []
|
| 373 |
+
self.check_cycle_algorithm(g, expected_cycles, chordless=True)
|
| 374 |
+
|
| 375 |
+
def test_chordless_cycles_directed(self):
|
| 376 |
+
G = nx.DiGraph()
|
| 377 |
+
nx.add_cycle(G, range(5))
|
| 378 |
+
nx.add_cycle(G, range(4, 12))
|
| 379 |
+
expected = [[*range(5)], [*range(4, 12)]]
|
| 380 |
+
self.check_cycle_algorithm(G, expected, chordless=True)
|
| 381 |
+
self.check_cycle_algorithm(
|
| 382 |
+
G, [c for c in expected if len(c) <= 5], length_bound=5, chordless=True
|
| 383 |
+
)
|
| 384 |
+
|
| 385 |
+
G.add_edge(7, 3)
|
| 386 |
+
expected.append([*range(3, 8)])
|
| 387 |
+
self.check_cycle_algorithm(G, expected, chordless=True)
|
| 388 |
+
self.check_cycle_algorithm(
|
| 389 |
+
G, [c for c in expected if len(c) <= 5], length_bound=5, chordless=True
|
| 390 |
+
)
|
| 391 |
+
|
| 392 |
+
G.add_edge(3, 7)
|
| 393 |
+
expected[-1] = [7, 3]
|
| 394 |
+
self.check_cycle_algorithm(G, expected, chordless=True)
|
| 395 |
+
self.check_cycle_algorithm(
|
| 396 |
+
G, [c for c in expected if len(c) <= 5], length_bound=5, chordless=True
|
| 397 |
+
)
|
| 398 |
+
|
| 399 |
+
expected.pop()
|
| 400 |
+
G.remove_edge(7, 3)
|
| 401 |
+
self.check_cycle_algorithm(G, expected, chordless=True)
|
| 402 |
+
self.check_cycle_algorithm(
|
| 403 |
+
G, [c for c in expected if len(c) <= 5], length_bound=5, chordless=True
|
| 404 |
+
)
|
| 405 |
+
|
| 406 |
+
def test_directed_chordless_cycle_diclique(self):
|
| 407 |
+
g_family = [self.D(n) for n in range(10)]
|
| 408 |
+
expected_cycles = [(n * n - n) // 2 for n in range(10)]
|
| 409 |
+
self.check_cycle_enumeration_integer_sequence(
|
| 410 |
+
g_family, expected_cycles, chordless=True
|
| 411 |
+
)
|
| 412 |
+
|
| 413 |
+
expected_cycles = [(n * n - n) // 2 for n in range(10)]
|
| 414 |
+
self.check_cycle_enumeration_integer_sequence(
|
| 415 |
+
g_family, expected_cycles, length_bound=2
|
| 416 |
+
)
|
| 417 |
+
|
| 418 |
+
def test_directed_chordless_loop_blockade(self):
|
| 419 |
+
g = nx.DiGraph((i, i) for i in range(10))
|
| 420 |
+
nx.add_cycle(g, range(10))
|
| 421 |
+
expected_cycles = [(i,) for i in range(10)]
|
| 422 |
+
self.check_cycle_algorithm(g, expected_cycles, chordless=True)
|
| 423 |
+
|
| 424 |
+
self.check_cycle_algorithm(g, expected_cycles, length_bound=1)
|
| 425 |
+
|
| 426 |
+
g = nx.MultiDiGraph(g)
|
| 427 |
+
g.add_edges_from((i, i) for i in range(0, 10, 2))
|
| 428 |
+
expected_cycles = [(i,) for i in range(1, 10, 2)]
|
| 429 |
+
self.check_cycle_algorithm(g, expected_cycles, chordless=True)
|
| 430 |
+
|
| 431 |
+
def test_simple_cycles_notable_clique_sequences(self):
|
| 432 |
+
# A000292: Number of labeled graphs on n+3 nodes that are triangles.
|
| 433 |
+
g_family = [self.K(n) for n in range(2, 12)]
|
| 434 |
+
expected = [0, 1, 4, 10, 20, 35, 56, 84, 120, 165, 220]
|
| 435 |
+
self.check_cycle_enumeration_integer_sequence(
|
| 436 |
+
g_family, expected, length_bound=3
|
| 437 |
+
)
|
| 438 |
+
|
| 439 |
+
def triangles(g, **kwargs):
|
| 440 |
+
yield from (c for c in nx.simple_cycles(g, **kwargs) if len(c) == 3)
|
| 441 |
+
|
| 442 |
+
# directed complete graphs have twice as many triangles thanks to reversal
|
| 443 |
+
g_family = [self.D(n) for n in range(2, 12)]
|
| 444 |
+
expected = [2 * e for e in expected]
|
| 445 |
+
self.check_cycle_enumeration_integer_sequence(
|
| 446 |
+
g_family, expected, length_bound=3, algorithm=triangles
|
| 447 |
+
)
|
| 448 |
+
|
| 449 |
+
def four_cycles(g, **kwargs):
|
| 450 |
+
yield from (c for c in nx.simple_cycles(g, **kwargs) if len(c) == 4)
|
| 451 |
+
|
| 452 |
+
# A050534: the number of 4-cycles in the complete graph K_{n+1}
|
| 453 |
+
expected = [0, 0, 0, 3, 15, 45, 105, 210, 378, 630, 990]
|
| 454 |
+
g_family = [self.K(n) for n in range(1, 12)]
|
| 455 |
+
self.check_cycle_enumeration_integer_sequence(
|
| 456 |
+
g_family, expected, length_bound=4, algorithm=four_cycles
|
| 457 |
+
)
|
| 458 |
+
|
| 459 |
+
# directed complete graphs have twice as many 4-cycles thanks to reversal
|
| 460 |
+
expected = [2 * e for e in expected]
|
| 461 |
+
g_family = [self.D(n) for n in range(1, 15)]
|
| 462 |
+
self.check_cycle_enumeration_integer_sequence(
|
| 463 |
+
g_family, expected, length_bound=4, algorithm=four_cycles
|
| 464 |
+
)
|
| 465 |
+
|
| 466 |
+
# A006231: the number of elementary circuits in a complete directed graph with n nodes
|
| 467 |
+
expected = [0, 1, 5, 20, 84, 409, 2365]
|
| 468 |
+
g_family = [self.D(n) for n in range(1, 8)]
|
| 469 |
+
self.check_cycle_enumeration_integer_sequence(g_family, expected)
|
| 470 |
+
|
| 471 |
+
# A002807: Number of cycles in the complete graph on n nodes K_{n}.
|
| 472 |
+
expected = [0, 0, 0, 1, 7, 37, 197, 1172]
|
| 473 |
+
g_family = [self.K(n) for n in range(8)]
|
| 474 |
+
self.check_cycle_enumeration_integer_sequence(g_family, expected)
|
| 475 |
+
|
| 476 |
+
def test_directed_chordless_cycle_parallel_multiedges(self):
|
| 477 |
+
g = nx.MultiGraph()
|
| 478 |
+
|
| 479 |
+
nx.add_cycle(g, range(5))
|
| 480 |
+
expected = [[*range(5)]]
|
| 481 |
+
self.check_cycle_algorithm(g, expected, chordless=True)
|
| 482 |
+
|
| 483 |
+
nx.add_cycle(g, range(5))
|
| 484 |
+
expected = [*cycle_edges(range(5))]
|
| 485 |
+
self.check_cycle_algorithm(g, expected, chordless=True)
|
| 486 |
+
|
| 487 |
+
nx.add_cycle(g, range(5))
|
| 488 |
+
expected = []
|
| 489 |
+
self.check_cycle_algorithm(g, expected, chordless=True)
|
| 490 |
+
|
| 491 |
+
g = nx.MultiDiGraph()
|
| 492 |
+
|
| 493 |
+
nx.add_cycle(g, range(5))
|
| 494 |
+
expected = [[*range(5)]]
|
| 495 |
+
self.check_cycle_algorithm(g, expected, chordless=True)
|
| 496 |
+
|
| 497 |
+
nx.add_cycle(g, range(5))
|
| 498 |
+
self.check_cycle_algorithm(g, [], chordless=True)
|
| 499 |
+
|
| 500 |
+
nx.add_cycle(g, range(5))
|
| 501 |
+
self.check_cycle_algorithm(g, [], chordless=True)
|
| 502 |
+
|
| 503 |
+
g = nx.MultiDiGraph()
|
| 504 |
+
|
| 505 |
+
nx.add_cycle(g, range(5))
|
| 506 |
+
nx.add_cycle(g, range(5)[::-1])
|
| 507 |
+
expected = [*cycle_edges(range(5))]
|
| 508 |
+
self.check_cycle_algorithm(g, expected, chordless=True)
|
| 509 |
+
|
| 510 |
+
nx.add_cycle(g, range(5))
|
| 511 |
+
self.check_cycle_algorithm(g, [], chordless=True)
|
| 512 |
+
|
| 513 |
+
def test_chordless_cycles_graph(self):
|
| 514 |
+
G = nx.Graph()
|
| 515 |
+
nx.add_cycle(G, range(5))
|
| 516 |
+
nx.add_cycle(G, range(4, 12))
|
| 517 |
+
expected = [[*range(5)], [*range(4, 12)]]
|
| 518 |
+
self.check_cycle_algorithm(G, expected, chordless=True)
|
| 519 |
+
self.check_cycle_algorithm(
|
| 520 |
+
G, [c for c in expected if len(c) <= 5], length_bound=5, chordless=True
|
| 521 |
+
)
|
| 522 |
+
|
| 523 |
+
G.add_edge(7, 3)
|
| 524 |
+
expected.append([*range(3, 8)])
|
| 525 |
+
expected.append([4, 3, 7, 8, 9, 10, 11])
|
| 526 |
+
self.check_cycle_algorithm(G, expected, chordless=True)
|
| 527 |
+
self.check_cycle_algorithm(
|
| 528 |
+
G, [c for c in expected if len(c) <= 5], length_bound=5, chordless=True
|
| 529 |
+
)
|
| 530 |
+
|
| 531 |
+
def test_chordless_cycles_giant_hamiltonian(self):
|
| 532 |
+
# ... o - e - o - e - o ... # o = odd, e = even
|
| 533 |
+
# ... ---/ \-----/ \--- ... # <-- "long" edges
|
| 534 |
+
#
|
| 535 |
+
# each long edge belongs to exactly one triangle, and one giant cycle
|
| 536 |
+
# of length n/2. The remaining edges each belong to a triangle
|
| 537 |
+
|
| 538 |
+
n = 1000
|
| 539 |
+
assert n % 2 == 0
|
| 540 |
+
G = nx.Graph()
|
| 541 |
+
for v in range(n):
|
| 542 |
+
if not v % 2:
|
| 543 |
+
G.add_edge(v, (v + 2) % n)
|
| 544 |
+
G.add_edge(v, (v + 1) % n)
|
| 545 |
+
|
| 546 |
+
expected = [[*range(0, n, 2)]] + [
|
| 547 |
+
[x % n for x in range(i, i + 3)] for i in range(0, n, 2)
|
| 548 |
+
]
|
| 549 |
+
self.check_cycle_algorithm(G, expected, chordless=True)
|
| 550 |
+
self.check_cycle_algorithm(
|
| 551 |
+
G, [c for c in expected if len(c) <= 3], length_bound=3, chordless=True
|
| 552 |
+
)
|
| 553 |
+
|
| 554 |
+
# ... o -> e -> o -> e -> o ... # o = odd, e = even
|
| 555 |
+
# ... <---/ \---<---/ \---< ... # <-- "long" edges
|
| 556 |
+
#
|
| 557 |
+
# this time, we orient the short and long edges in opposition
|
| 558 |
+
# the cycle structure of this graph is the same, but we need to reverse
|
| 559 |
+
# the long one in our representation. Also, we need to drop the size
|
| 560 |
+
# because our partitioning algorithm uses strongly connected components
|
| 561 |
+
# instead of separating graphs by their strong articulation points
|
| 562 |
+
|
| 563 |
+
n = 100
|
| 564 |
+
assert n % 2 == 0
|
| 565 |
+
G = nx.DiGraph()
|
| 566 |
+
for v in range(n):
|
| 567 |
+
G.add_edge(v, (v + 1) % n)
|
| 568 |
+
if not v % 2:
|
| 569 |
+
G.add_edge((v + 2) % n, v)
|
| 570 |
+
|
| 571 |
+
expected = [[*range(n - 2, -2, -2)]] + [
|
| 572 |
+
[x % n for x in range(i, i + 3)] for i in range(0, n, 2)
|
| 573 |
+
]
|
| 574 |
+
self.check_cycle_algorithm(G, expected, chordless=True)
|
| 575 |
+
self.check_cycle_algorithm(
|
| 576 |
+
G, [c for c in expected if len(c) <= 3], length_bound=3, chordless=True
|
| 577 |
+
)
|
| 578 |
+
|
| 579 |
+
def test_simple_cycles_acyclic_tournament(self):
|
| 580 |
+
n = 10
|
| 581 |
+
G = nx.DiGraph((x, y) for x in range(n) for y in range(x))
|
| 582 |
+
self.check_cycle_algorithm(G, [])
|
| 583 |
+
self.check_cycle_algorithm(G, [], chordless=True)
|
| 584 |
+
|
| 585 |
+
for k in range(n + 1):
|
| 586 |
+
self.check_cycle_algorithm(G, [], length_bound=k)
|
| 587 |
+
self.check_cycle_algorithm(G, [], length_bound=k, chordless=True)
|
| 588 |
+
|
| 589 |
+
def test_simple_cycles_graph(self):
|
| 590 |
+
testG = nx.cycle_graph(8)
|
| 591 |
+
cyc1 = tuple(range(8))
|
| 592 |
+
self.check_cycle_algorithm(testG, [cyc1])
|
| 593 |
+
|
| 594 |
+
testG.add_edge(4, -1)
|
| 595 |
+
nx.add_path(testG, [3, -2, -3, -4])
|
| 596 |
+
self.check_cycle_algorithm(testG, [cyc1])
|
| 597 |
+
|
| 598 |
+
testG.update(nx.cycle_graph(range(8, 16)))
|
| 599 |
+
cyc2 = tuple(range(8, 16))
|
| 600 |
+
self.check_cycle_algorithm(testG, [cyc1, cyc2])
|
| 601 |
+
|
| 602 |
+
testG.update(nx.cycle_graph(range(4, 12)))
|
| 603 |
+
cyc3 = tuple(range(4, 12))
|
| 604 |
+
expected = {
|
| 605 |
+
(0, 1, 2, 3, 4, 5, 6, 7), # cyc1
|
| 606 |
+
(8, 9, 10, 11, 12, 13, 14, 15), # cyc2
|
| 607 |
+
(4, 5, 6, 7, 8, 9, 10, 11), # cyc3
|
| 608 |
+
(4, 5, 6, 7, 8, 15, 14, 13, 12, 11), # cyc2 + cyc3
|
| 609 |
+
(0, 1, 2, 3, 4, 11, 10, 9, 8, 7), # cyc1 + cyc3
|
| 610 |
+
(0, 1, 2, 3, 4, 11, 12, 13, 14, 15, 8, 7), # cyc1 + cyc2 + cyc3
|
| 611 |
+
}
|
| 612 |
+
self.check_cycle_algorithm(testG, expected)
|
| 613 |
+
assert len(expected) == (2**3 - 1) - 1 # 1 disjoint comb: cyc1 + cyc2
|
| 614 |
+
|
| 615 |
+
# Basis size = 5 (2 loops overlapping gives 5 small loops
|
| 616 |
+
# E
|
| 617 |
+
# / \ Note: A-F = 10-15
|
| 618 |
+
# 1-2-3-4-5
|
| 619 |
+
# / | | \ cyc1=012DAB -- left
|
| 620 |
+
# 0 D F 6 cyc2=234E -- top
|
| 621 |
+
# \ | | / cyc3=45678F -- right
|
| 622 |
+
# B-A-9-8-7 cyc4=89AC -- bottom
|
| 623 |
+
# \ / cyc5=234F89AD -- middle
|
| 624 |
+
# C
|
| 625 |
+
#
|
| 626 |
+
# combinations of 5 basis elements: 2^5 - 1 (one includes no cycles)
|
| 627 |
+
#
|
| 628 |
+
# disjoint combs: (11 total) not simple cycles
|
| 629 |
+
# Any pair not including cyc5 => choose(4, 2) = 6
|
| 630 |
+
# Any triple not including cyc5 => choose(4, 3) = 4
|
| 631 |
+
# Any quad not including cyc5 => choose(4, 4) = 1
|
| 632 |
+
#
|
| 633 |
+
# we expect 31 - 11 = 20 simple cycles
|
| 634 |
+
#
|
| 635 |
+
testG = nx.cycle_graph(12)
|
| 636 |
+
testG.update(nx.cycle_graph([12, 10, 13, 2, 14, 4, 15, 8]).edges)
|
| 637 |
+
expected = (2**5 - 1) - 11 # 11 disjoint combinations
|
| 638 |
+
self.check_cycle_algorithm(testG, expected)
|
| 639 |
+
|
| 640 |
+
def test_simple_cycles_bounded(self):
|
| 641 |
+
# iteratively construct a cluster of nested cycles running in the same direction
|
| 642 |
+
# there should be one cycle of every length
|
| 643 |
+
d = nx.DiGraph()
|
| 644 |
+
expected = []
|
| 645 |
+
for n in range(10):
|
| 646 |
+
nx.add_cycle(d, range(n))
|
| 647 |
+
expected.append(n)
|
| 648 |
+
for k, e in enumerate(expected):
|
| 649 |
+
self.check_cycle_algorithm(d, e, length_bound=k)
|
| 650 |
+
|
| 651 |
+
# iteratively construct a path of undirected cycles, connected at articulation
|
| 652 |
+
# points. there should be one cycle of every length except 2: no digons
|
| 653 |
+
g = nx.Graph()
|
| 654 |
+
top = 0
|
| 655 |
+
expected = []
|
| 656 |
+
for n in range(10):
|
| 657 |
+
expected.append(n if n < 2 else n - 1)
|
| 658 |
+
if n == 2:
|
| 659 |
+
# no digons in undirected graphs
|
| 660 |
+
continue
|
| 661 |
+
nx.add_cycle(g, range(top, top + n))
|
| 662 |
+
top += n
|
| 663 |
+
for k, e in enumerate(expected):
|
| 664 |
+
self.check_cycle_algorithm(g, e, length_bound=k)
|
| 665 |
+
|
| 666 |
+
def test_simple_cycles_bound_corner_cases(self):
|
| 667 |
+
G = nx.cycle_graph(4)
|
| 668 |
+
DG = nx.cycle_graph(4, create_using=nx.DiGraph)
|
| 669 |
+
assert list(nx.simple_cycles(G, length_bound=0)) == []
|
| 670 |
+
assert list(nx.simple_cycles(DG, length_bound=0)) == []
|
| 671 |
+
assert list(nx.chordless_cycles(G, length_bound=0)) == []
|
| 672 |
+
assert list(nx.chordless_cycles(DG, length_bound=0)) == []
|
| 673 |
+
|
| 674 |
+
def test_simple_cycles_bound_error(self):
|
| 675 |
+
with pytest.raises(ValueError):
|
| 676 |
+
G = nx.DiGraph()
|
| 677 |
+
for c in nx.simple_cycles(G, -1):
|
| 678 |
+
assert False
|
| 679 |
+
|
| 680 |
+
with pytest.raises(ValueError):
|
| 681 |
+
G = nx.Graph()
|
| 682 |
+
for c in nx.simple_cycles(G, -1):
|
| 683 |
+
assert False
|
| 684 |
+
|
| 685 |
+
with pytest.raises(ValueError):
|
| 686 |
+
G = nx.Graph()
|
| 687 |
+
for c in nx.chordless_cycles(G, -1):
|
| 688 |
+
assert False
|
| 689 |
+
|
| 690 |
+
with pytest.raises(ValueError):
|
| 691 |
+
G = nx.DiGraph()
|
| 692 |
+
for c in nx.chordless_cycles(G, -1):
|
| 693 |
+
assert False
|
| 694 |
+
|
| 695 |
+
def test_chordless_cycles_clique(self):
|
| 696 |
+
g_family = [self.K(n) for n in range(2, 15)]
|
| 697 |
+
expected = [0, 1, 4, 10, 20, 35, 56, 84, 120, 165, 220, 286, 364]
|
| 698 |
+
self.check_cycle_enumeration_integer_sequence(
|
| 699 |
+
g_family, expected, chordless=True
|
| 700 |
+
)
|
| 701 |
+
|
| 702 |
+
# directed cliques have as many digons as undirected graphs have edges
|
| 703 |
+
expected = [(n * n - n) // 2 for n in range(15)]
|
| 704 |
+
g_family = [self.D(n) for n in range(15)]
|
| 705 |
+
self.check_cycle_enumeration_integer_sequence(
|
| 706 |
+
g_family, expected, chordless=True
|
| 707 |
+
)
|
| 708 |
+
|
| 709 |
+
|
| 710 |
+
# These tests might fail with hash randomization since they depend on
|
| 711 |
+
# edge_dfs. For more information, see the comments in:
|
| 712 |
+
# networkx/algorithms/traversal/tests/test_edgedfs.py
|
| 713 |
+
|
| 714 |
+
|
| 715 |
+
class TestFindCycle:
|
| 716 |
+
@classmethod
|
| 717 |
+
def setup_class(cls):
|
| 718 |
+
cls.nodes = [0, 1, 2, 3]
|
| 719 |
+
cls.edges = [(-1, 0), (0, 1), (1, 0), (1, 0), (2, 1), (3, 1)]
|
| 720 |
+
|
| 721 |
+
def test_graph_nocycle(self):
|
| 722 |
+
G = nx.Graph(self.edges)
|
| 723 |
+
pytest.raises(nx.exception.NetworkXNoCycle, nx.find_cycle, G, self.nodes)
|
| 724 |
+
|
| 725 |
+
def test_graph_cycle(self):
|
| 726 |
+
G = nx.Graph(self.edges)
|
| 727 |
+
G.add_edge(2, 0)
|
| 728 |
+
x = list(nx.find_cycle(G, self.nodes))
|
| 729 |
+
x_ = [(0, 1), (1, 2), (2, 0)]
|
| 730 |
+
assert x == x_
|
| 731 |
+
|
| 732 |
+
def test_graph_orientation_none(self):
|
| 733 |
+
G = nx.Graph(self.edges)
|
| 734 |
+
G.add_edge(2, 0)
|
| 735 |
+
x = list(nx.find_cycle(G, self.nodes, orientation=None))
|
| 736 |
+
x_ = [(0, 1), (1, 2), (2, 0)]
|
| 737 |
+
assert x == x_
|
| 738 |
+
|
| 739 |
+
def test_graph_orientation_original(self):
|
| 740 |
+
G = nx.Graph(self.edges)
|
| 741 |
+
G.add_edge(2, 0)
|
| 742 |
+
x = list(nx.find_cycle(G, self.nodes, orientation="original"))
|
| 743 |
+
x_ = [(0, 1, FORWARD), (1, 2, FORWARD), (2, 0, FORWARD)]
|
| 744 |
+
assert x == x_
|
| 745 |
+
|
| 746 |
+
def test_digraph(self):
|
| 747 |
+
G = nx.DiGraph(self.edges)
|
| 748 |
+
x = list(nx.find_cycle(G, self.nodes))
|
| 749 |
+
x_ = [(0, 1), (1, 0)]
|
| 750 |
+
assert x == x_
|
| 751 |
+
|
| 752 |
+
def test_digraph_orientation_none(self):
|
| 753 |
+
G = nx.DiGraph(self.edges)
|
| 754 |
+
x = list(nx.find_cycle(G, self.nodes, orientation=None))
|
| 755 |
+
x_ = [(0, 1), (1, 0)]
|
| 756 |
+
assert x == x_
|
| 757 |
+
|
| 758 |
+
def test_digraph_orientation_original(self):
|
| 759 |
+
G = nx.DiGraph(self.edges)
|
| 760 |
+
x = list(nx.find_cycle(G, self.nodes, orientation="original"))
|
| 761 |
+
x_ = [(0, 1, FORWARD), (1, 0, FORWARD)]
|
| 762 |
+
assert x == x_
|
| 763 |
+
|
| 764 |
+
def test_multigraph(self):
|
| 765 |
+
G = nx.MultiGraph(self.edges)
|
| 766 |
+
x = list(nx.find_cycle(G, self.nodes))
|
| 767 |
+
x_ = [(0, 1, 0), (1, 0, 1)] # or (1, 0, 2)
|
| 768 |
+
# Hash randomization...could be any edge.
|
| 769 |
+
assert x[0] == x_[0]
|
| 770 |
+
assert x[1][:2] == x_[1][:2]
|
| 771 |
+
|
| 772 |
+
def test_multidigraph(self):
|
| 773 |
+
G = nx.MultiDiGraph(self.edges)
|
| 774 |
+
x = list(nx.find_cycle(G, self.nodes))
|
| 775 |
+
x_ = [(0, 1, 0), (1, 0, 0)] # (1, 0, 1)
|
| 776 |
+
assert x[0] == x_[0]
|
| 777 |
+
assert x[1][:2] == x_[1][:2]
|
| 778 |
+
|
| 779 |
+
def test_digraph_ignore(self):
|
| 780 |
+
G = nx.DiGraph(self.edges)
|
| 781 |
+
x = list(nx.find_cycle(G, self.nodes, orientation="ignore"))
|
| 782 |
+
x_ = [(0, 1, FORWARD), (1, 0, FORWARD)]
|
| 783 |
+
assert x == x_
|
| 784 |
+
|
| 785 |
+
def test_digraph_reverse(self):
|
| 786 |
+
G = nx.DiGraph(self.edges)
|
| 787 |
+
x = list(nx.find_cycle(G, self.nodes, orientation="reverse"))
|
| 788 |
+
x_ = [(1, 0, REVERSE), (0, 1, REVERSE)]
|
| 789 |
+
assert x == x_
|
| 790 |
+
|
| 791 |
+
def test_multidigraph_ignore(self):
|
| 792 |
+
G = nx.MultiDiGraph(self.edges)
|
| 793 |
+
x = list(nx.find_cycle(G, self.nodes, orientation="ignore"))
|
| 794 |
+
x_ = [(0, 1, 0, FORWARD), (1, 0, 0, FORWARD)] # or (1, 0, 1, 1)
|
| 795 |
+
assert x[0] == x_[0]
|
| 796 |
+
assert x[1][:2] == x_[1][:2]
|
| 797 |
+
assert x[1][3] == x_[1][3]
|
| 798 |
+
|
| 799 |
+
def test_multidigraph_ignore2(self):
|
| 800 |
+
# Loop traversed an edge while ignoring its orientation.
|
| 801 |
+
G = nx.MultiDiGraph([(0, 1), (1, 2), (1, 2)])
|
| 802 |
+
x = list(nx.find_cycle(G, [0, 1, 2], orientation="ignore"))
|
| 803 |
+
x_ = [(1, 2, 0, FORWARD), (1, 2, 1, REVERSE)]
|
| 804 |
+
assert x == x_
|
| 805 |
+
|
| 806 |
+
def test_multidigraph_original(self):
|
| 807 |
+
# Node 2 doesn't need to be searched again from visited from 4.
|
| 808 |
+
# The goal here is to cover the case when 2 to be researched from 4,
|
| 809 |
+
# when 4 is visited from the first time (so we must make sure that 4
|
| 810 |
+
# is not visited from 2, and hence, we respect the edge orientation).
|
| 811 |
+
G = nx.MultiDiGraph([(0, 1), (1, 2), (2, 3), (4, 2)])
|
| 812 |
+
pytest.raises(
|
| 813 |
+
nx.exception.NetworkXNoCycle,
|
| 814 |
+
nx.find_cycle,
|
| 815 |
+
G,
|
| 816 |
+
[0, 1, 2, 3, 4],
|
| 817 |
+
orientation="original",
|
| 818 |
+
)
|
| 819 |
+
|
| 820 |
+
def test_dag(self):
|
| 821 |
+
G = nx.DiGraph([(0, 1), (0, 2), (1, 2)])
|
| 822 |
+
pytest.raises(
|
| 823 |
+
nx.exception.NetworkXNoCycle, nx.find_cycle, G, orientation="original"
|
| 824 |
+
)
|
| 825 |
+
x = list(nx.find_cycle(G, orientation="ignore"))
|
| 826 |
+
assert x == [(0, 1, FORWARD), (1, 2, FORWARD), (0, 2, REVERSE)]
|
| 827 |
+
|
| 828 |
+
def test_prev_explored(self):
|
| 829 |
+
# https://github.com/networkx/networkx/issues/2323
|
| 830 |
+
|
| 831 |
+
G = nx.DiGraph()
|
| 832 |
+
G.add_edges_from([(1, 0), (2, 0), (1, 2), (2, 1)])
|
| 833 |
+
pytest.raises(nx.NetworkXNoCycle, nx.find_cycle, G, source=0)
|
| 834 |
+
x = list(nx.find_cycle(G, 1))
|
| 835 |
+
x_ = [(1, 2), (2, 1)]
|
| 836 |
+
assert x == x_
|
| 837 |
+
|
| 838 |
+
x = list(nx.find_cycle(G, 2))
|
| 839 |
+
x_ = [(2, 1), (1, 2)]
|
| 840 |
+
assert x == x_
|
| 841 |
+
|
| 842 |
+
x = list(nx.find_cycle(G))
|
| 843 |
+
x_ = [(1, 2), (2, 1)]
|
| 844 |
+
assert x == x_
|
| 845 |
+
|
| 846 |
+
def test_no_cycle(self):
|
| 847 |
+
# https://github.com/networkx/networkx/issues/2439
|
| 848 |
+
|
| 849 |
+
G = nx.DiGraph()
|
| 850 |
+
G.add_edges_from([(1, 2), (2, 0), (3, 1), (3, 2)])
|
| 851 |
+
pytest.raises(nx.NetworkXNoCycle, nx.find_cycle, G, source=0)
|
| 852 |
+
pytest.raises(nx.NetworkXNoCycle, nx.find_cycle, G)
|
| 853 |
+
|
| 854 |
+
|
| 855 |
+
def assert_basis_equal(a, b):
|
| 856 |
+
assert sorted(a) == sorted(b)
|
| 857 |
+
|
| 858 |
+
|
| 859 |
+
class TestMinimumCycleBasis:
|
| 860 |
+
@classmethod
|
| 861 |
+
def setup_class(cls):
|
| 862 |
+
T = nx.Graph()
|
| 863 |
+
nx.add_cycle(T, [1, 2, 3, 4], weight=1)
|
| 864 |
+
T.add_edge(2, 4, weight=5)
|
| 865 |
+
cls.diamond_graph = T
|
| 866 |
+
|
| 867 |
+
def test_unweighted_diamond(self):
|
| 868 |
+
mcb = nx.minimum_cycle_basis(self.diamond_graph)
|
| 869 |
+
assert_basis_equal(mcb, [[2, 4, 1], [3, 4, 2]])
|
| 870 |
+
|
| 871 |
+
def test_weighted_diamond(self):
|
| 872 |
+
mcb = nx.minimum_cycle_basis(self.diamond_graph, weight="weight")
|
| 873 |
+
assert_basis_equal(mcb, [[2, 4, 1], [4, 3, 2, 1]])
|
| 874 |
+
|
| 875 |
+
def test_dimensionality(self):
|
| 876 |
+
# checks |MCB|=|E|-|V|+|NC|
|
| 877 |
+
ntrial = 10
|
| 878 |
+
for seed in range(1234, 1234 + ntrial):
|
| 879 |
+
rg = nx.erdos_renyi_graph(10, 0.3, seed=seed)
|
| 880 |
+
nnodes = rg.number_of_nodes()
|
| 881 |
+
nedges = rg.number_of_edges()
|
| 882 |
+
ncomp = nx.number_connected_components(rg)
|
| 883 |
+
|
| 884 |
+
mcb = nx.minimum_cycle_basis(rg)
|
| 885 |
+
assert len(mcb) == nedges - nnodes + ncomp
|
| 886 |
+
check_independent(mcb)
|
| 887 |
+
|
| 888 |
+
def test_complete_graph(self):
|
| 889 |
+
cg = nx.complete_graph(5)
|
| 890 |
+
mcb = nx.minimum_cycle_basis(cg)
|
| 891 |
+
assert all(len(cycle) == 3 for cycle in mcb)
|
| 892 |
+
check_independent(mcb)
|
| 893 |
+
|
| 894 |
+
def test_tree_graph(self):
|
| 895 |
+
tg = nx.balanced_tree(3, 3)
|
| 896 |
+
assert not nx.minimum_cycle_basis(tg)
|
| 897 |
+
|
| 898 |
+
def test_petersen_graph(self):
|
| 899 |
+
G = nx.petersen_graph()
|
| 900 |
+
mcb = list(nx.minimum_cycle_basis(G))
|
| 901 |
+
expected = [
|
| 902 |
+
[4, 9, 7, 5, 0],
|
| 903 |
+
[1, 2, 3, 4, 0],
|
| 904 |
+
[1, 6, 8, 5, 0],
|
| 905 |
+
[4, 3, 8, 5, 0],
|
| 906 |
+
[1, 6, 9, 4, 0],
|
| 907 |
+
[1, 2, 7, 5, 0],
|
| 908 |
+
]
|
| 909 |
+
assert len(mcb) == len(expected)
|
| 910 |
+
assert all(c in expected for c in mcb)
|
| 911 |
+
|
| 912 |
+
# check that order of the nodes is a path
|
| 913 |
+
for c in mcb:
|
| 914 |
+
assert all(G.has_edge(u, v) for u, v in nx.utils.pairwise(c, cyclic=True))
|
| 915 |
+
# check independence of the basis
|
| 916 |
+
check_independent(mcb)
|
| 917 |
+
|
| 918 |
+
def test_gh6787_variable_weighted_complete_graph(self):
|
| 919 |
+
N = 8
|
| 920 |
+
cg = nx.complete_graph(N)
|
| 921 |
+
cg.add_weighted_edges_from([(u, v, 9) for u, v in cg.edges])
|
| 922 |
+
cg.add_weighted_edges_from([(u, v, 1) for u, v in nx.cycle_graph(N).edges])
|
| 923 |
+
mcb = nx.minimum_cycle_basis(cg, weight="weight")
|
| 924 |
+
check_independent(mcb)
|
| 925 |
+
|
| 926 |
+
def test_gh6787_and_edge_attribute_names(self):
|
| 927 |
+
G = nx.cycle_graph(4)
|
| 928 |
+
G.add_weighted_edges_from([(0, 2, 10), (1, 3, 10)], weight="dist")
|
| 929 |
+
expected = [[1, 3, 0], [3, 2, 1, 0], [1, 2, 0]]
|
| 930 |
+
mcb = list(nx.minimum_cycle_basis(G, weight="dist"))
|
| 931 |
+
assert len(mcb) == len(expected)
|
| 932 |
+
assert all(c in expected for c in mcb)
|
| 933 |
+
|
| 934 |
+
# test not using a weight with weight attributes
|
| 935 |
+
expected = [[1, 3, 0], [1, 2, 0], [3, 2, 0]]
|
| 936 |
+
mcb = list(nx.minimum_cycle_basis(G))
|
| 937 |
+
assert len(mcb) == len(expected)
|
| 938 |
+
assert all(c in expected for c in mcb)
|
| 939 |
+
|
| 940 |
+
|
| 941 |
+
class TestGirth:
|
| 942 |
+
@pytest.mark.parametrize(
|
| 943 |
+
("G", "expected"),
|
| 944 |
+
(
|
| 945 |
+
(nx.chvatal_graph(), 4),
|
| 946 |
+
(nx.tutte_graph(), 4),
|
| 947 |
+
(nx.petersen_graph(), 5),
|
| 948 |
+
(nx.heawood_graph(), 6),
|
| 949 |
+
(nx.pappus_graph(), 6),
|
| 950 |
+
(nx.random_labeled_tree(10, seed=42), inf),
|
| 951 |
+
(nx.empty_graph(10), inf),
|
| 952 |
+
(nx.Graph(chain(cycle_edges(range(5)), cycle_edges(range(6, 10)))), 4),
|
| 953 |
+
(
|
| 954 |
+
nx.Graph(
|
| 955 |
+
[
|
| 956 |
+
(0, 6),
|
| 957 |
+
(0, 8),
|
| 958 |
+
(0, 9),
|
| 959 |
+
(1, 8),
|
| 960 |
+
(2, 8),
|
| 961 |
+
(2, 9),
|
| 962 |
+
(4, 9),
|
| 963 |
+
(5, 9),
|
| 964 |
+
(6, 8),
|
| 965 |
+
(6, 9),
|
| 966 |
+
(7, 8),
|
| 967 |
+
]
|
| 968 |
+
),
|
| 969 |
+
3,
|
| 970 |
+
),
|
| 971 |
+
),
|
| 972 |
+
)
|
| 973 |
+
def test_girth(self, G, expected):
|
| 974 |
+
assert nx.girth(G) == expected
|
code/LaDi-RL-old-qwen-cod/LaDi-RL-old-qwen-cod/venv/lib64/python3.10/site-packages/networkx/algorithms/tests/test_d_separation.py
ADDED
|
@@ -0,0 +1,348 @@
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|
|
| 1 |
+
from itertools import combinations
|
| 2 |
+
|
| 3 |
+
import pytest
|
| 4 |
+
|
| 5 |
+
import networkx as nx
|
| 6 |
+
|
| 7 |
+
|
| 8 |
+
def path_graph():
|
| 9 |
+
"""Return a path graph of length three."""
|
| 10 |
+
G = nx.path_graph(3, create_using=nx.DiGraph)
|
| 11 |
+
G.graph["name"] = "path"
|
| 12 |
+
nx.freeze(G)
|
| 13 |
+
return G
|
| 14 |
+
|
| 15 |
+
|
| 16 |
+
def fork_graph():
|
| 17 |
+
"""Return a three node fork graph."""
|
| 18 |
+
G = nx.DiGraph(name="fork")
|
| 19 |
+
G.add_edges_from([(0, 1), (0, 2)])
|
| 20 |
+
nx.freeze(G)
|
| 21 |
+
return G
|
| 22 |
+
|
| 23 |
+
|
| 24 |
+
def collider_graph():
|
| 25 |
+
"""Return a collider/v-structure graph with three nodes."""
|
| 26 |
+
G = nx.DiGraph(name="collider")
|
| 27 |
+
G.add_edges_from([(0, 2), (1, 2)])
|
| 28 |
+
nx.freeze(G)
|
| 29 |
+
return G
|
| 30 |
+
|
| 31 |
+
|
| 32 |
+
def naive_bayes_graph():
|
| 33 |
+
"""Return a simply Naive Bayes PGM graph."""
|
| 34 |
+
G = nx.DiGraph(name="naive_bayes")
|
| 35 |
+
G.add_edges_from([(0, 1), (0, 2), (0, 3), (0, 4)])
|
| 36 |
+
nx.freeze(G)
|
| 37 |
+
return G
|
| 38 |
+
|
| 39 |
+
|
| 40 |
+
def asia_graph():
|
| 41 |
+
"""Return the 'Asia' PGM graph."""
|
| 42 |
+
G = nx.DiGraph(name="asia")
|
| 43 |
+
G.add_edges_from(
|
| 44 |
+
[
|
| 45 |
+
("asia", "tuberculosis"),
|
| 46 |
+
("smoking", "cancer"),
|
| 47 |
+
("smoking", "bronchitis"),
|
| 48 |
+
("tuberculosis", "either"),
|
| 49 |
+
("cancer", "either"),
|
| 50 |
+
("either", "xray"),
|
| 51 |
+
("either", "dyspnea"),
|
| 52 |
+
("bronchitis", "dyspnea"),
|
| 53 |
+
]
|
| 54 |
+
)
|
| 55 |
+
nx.freeze(G)
|
| 56 |
+
return G
|
| 57 |
+
|
| 58 |
+
|
| 59 |
+
@pytest.fixture(name="path_graph")
|
| 60 |
+
def path_graph_fixture():
|
| 61 |
+
return path_graph()
|
| 62 |
+
|
| 63 |
+
|
| 64 |
+
@pytest.fixture(name="fork_graph")
|
| 65 |
+
def fork_graph_fixture():
|
| 66 |
+
return fork_graph()
|
| 67 |
+
|
| 68 |
+
|
| 69 |
+
@pytest.fixture(name="collider_graph")
|
| 70 |
+
def collider_graph_fixture():
|
| 71 |
+
return collider_graph()
|
| 72 |
+
|
| 73 |
+
|
| 74 |
+
@pytest.fixture(name="naive_bayes_graph")
|
| 75 |
+
def naive_bayes_graph_fixture():
|
| 76 |
+
return naive_bayes_graph()
|
| 77 |
+
|
| 78 |
+
|
| 79 |
+
@pytest.fixture(name="asia_graph")
|
| 80 |
+
def asia_graph_fixture():
|
| 81 |
+
return asia_graph()
|
| 82 |
+
|
| 83 |
+
|
| 84 |
+
@pytest.fixture()
|
| 85 |
+
def large_collider_graph():
|
| 86 |
+
edge_list = [("A", "B"), ("C", "B"), ("B", "D"), ("D", "E"), ("B", "F"), ("G", "E")]
|
| 87 |
+
G = nx.DiGraph(edge_list)
|
| 88 |
+
return G
|
| 89 |
+
|
| 90 |
+
|
| 91 |
+
@pytest.fixture()
|
| 92 |
+
def chain_and_fork_graph():
|
| 93 |
+
edge_list = [("A", "B"), ("B", "C"), ("B", "D"), ("D", "C")]
|
| 94 |
+
G = nx.DiGraph(edge_list)
|
| 95 |
+
return G
|
| 96 |
+
|
| 97 |
+
|
| 98 |
+
@pytest.fixture()
|
| 99 |
+
def no_separating_set_graph():
|
| 100 |
+
edge_list = [("A", "B")]
|
| 101 |
+
G = nx.DiGraph(edge_list)
|
| 102 |
+
return G
|
| 103 |
+
|
| 104 |
+
|
| 105 |
+
@pytest.fixture()
|
| 106 |
+
def large_no_separating_set_graph():
|
| 107 |
+
edge_list = [("A", "B"), ("C", "A"), ("C", "B")]
|
| 108 |
+
G = nx.DiGraph(edge_list)
|
| 109 |
+
return G
|
| 110 |
+
|
| 111 |
+
|
| 112 |
+
@pytest.fixture()
|
| 113 |
+
def collider_trek_graph():
|
| 114 |
+
edge_list = [("A", "B"), ("C", "B"), ("C", "D")]
|
| 115 |
+
G = nx.DiGraph(edge_list)
|
| 116 |
+
return G
|
| 117 |
+
|
| 118 |
+
|
| 119 |
+
@pytest.mark.parametrize(
|
| 120 |
+
"graph",
|
| 121 |
+
[path_graph(), fork_graph(), collider_graph(), naive_bayes_graph(), asia_graph()],
|
| 122 |
+
)
|
| 123 |
+
def test_markov_condition(graph):
|
| 124 |
+
"""Test that the Markov condition holds for each PGM graph."""
|
| 125 |
+
for node in graph.nodes:
|
| 126 |
+
parents = set(graph.predecessors(node))
|
| 127 |
+
non_descendants = graph.nodes - nx.descendants(graph, node) - {node} - parents
|
| 128 |
+
assert nx.is_d_separator(graph, {node}, non_descendants, parents)
|
| 129 |
+
|
| 130 |
+
|
| 131 |
+
def test_path_graph_dsep(path_graph):
|
| 132 |
+
"""Example-based test of d-separation for path_graph."""
|
| 133 |
+
assert nx.is_d_separator(path_graph, {0}, {2}, {1})
|
| 134 |
+
assert not nx.is_d_separator(path_graph, {0}, {2}, set())
|
| 135 |
+
|
| 136 |
+
|
| 137 |
+
def test_fork_graph_dsep(fork_graph):
|
| 138 |
+
"""Example-based test of d-separation for fork_graph."""
|
| 139 |
+
assert nx.is_d_separator(fork_graph, {1}, {2}, {0})
|
| 140 |
+
assert not nx.is_d_separator(fork_graph, {1}, {2}, set())
|
| 141 |
+
|
| 142 |
+
|
| 143 |
+
def test_collider_graph_dsep(collider_graph):
|
| 144 |
+
"""Example-based test of d-separation for collider_graph."""
|
| 145 |
+
assert nx.is_d_separator(collider_graph, {0}, {1}, set())
|
| 146 |
+
assert not nx.is_d_separator(collider_graph, {0}, {1}, {2})
|
| 147 |
+
|
| 148 |
+
|
| 149 |
+
def test_naive_bayes_dsep(naive_bayes_graph):
|
| 150 |
+
"""Example-based test of d-separation for naive_bayes_graph."""
|
| 151 |
+
for u, v in combinations(range(1, 5), 2):
|
| 152 |
+
assert nx.is_d_separator(naive_bayes_graph, {u}, {v}, {0})
|
| 153 |
+
assert not nx.is_d_separator(naive_bayes_graph, {u}, {v}, set())
|
| 154 |
+
|
| 155 |
+
|
| 156 |
+
def test_asia_graph_dsep(asia_graph):
|
| 157 |
+
"""Example-based test of d-separation for asia_graph."""
|
| 158 |
+
assert nx.is_d_separator(
|
| 159 |
+
asia_graph, {"asia", "smoking"}, {"dyspnea", "xray"}, {"bronchitis", "either"}
|
| 160 |
+
)
|
| 161 |
+
assert nx.is_d_separator(
|
| 162 |
+
asia_graph, {"tuberculosis", "cancer"}, {"bronchitis"}, {"smoking", "xray"}
|
| 163 |
+
)
|
| 164 |
+
|
| 165 |
+
|
| 166 |
+
def test_undirected_graphs_are_not_supported():
|
| 167 |
+
"""
|
| 168 |
+
Test that undirected graphs are not supported.
|
| 169 |
+
|
| 170 |
+
d-separation and its related algorithms do not apply in
|
| 171 |
+
the case of undirected graphs.
|
| 172 |
+
"""
|
| 173 |
+
g = nx.path_graph(3, nx.Graph)
|
| 174 |
+
with pytest.raises(nx.NetworkXNotImplemented):
|
| 175 |
+
nx.is_d_separator(g, {0}, {1}, {2})
|
| 176 |
+
with pytest.raises(nx.NetworkXNotImplemented):
|
| 177 |
+
nx.is_minimal_d_separator(g, {0}, {1}, {2})
|
| 178 |
+
with pytest.raises(nx.NetworkXNotImplemented):
|
| 179 |
+
nx.find_minimal_d_separator(g, {0}, {1})
|
| 180 |
+
|
| 181 |
+
|
| 182 |
+
def test_cyclic_graphs_raise_error():
|
| 183 |
+
"""
|
| 184 |
+
Test that cycle graphs should cause erroring.
|
| 185 |
+
|
| 186 |
+
This is because PGMs assume a directed acyclic graph.
|
| 187 |
+
"""
|
| 188 |
+
g = nx.cycle_graph(3, nx.DiGraph)
|
| 189 |
+
with pytest.raises(nx.NetworkXError):
|
| 190 |
+
nx.is_d_separator(g, {0}, {1}, {2})
|
| 191 |
+
with pytest.raises(nx.NetworkXError):
|
| 192 |
+
nx.find_minimal_d_separator(g, {0}, {1})
|
| 193 |
+
with pytest.raises(nx.NetworkXError):
|
| 194 |
+
nx.is_minimal_d_separator(g, {0}, {1}, {2})
|
| 195 |
+
|
| 196 |
+
|
| 197 |
+
def test_invalid_nodes_raise_error(asia_graph):
|
| 198 |
+
"""
|
| 199 |
+
Test that graphs that have invalid nodes passed in raise errors.
|
| 200 |
+
"""
|
| 201 |
+
# Check both set and node arguments
|
| 202 |
+
with pytest.raises(nx.NodeNotFound):
|
| 203 |
+
nx.is_d_separator(asia_graph, {0}, {1}, {2})
|
| 204 |
+
with pytest.raises(nx.NodeNotFound):
|
| 205 |
+
nx.is_d_separator(asia_graph, 0, 1, 2)
|
| 206 |
+
with pytest.raises(nx.NodeNotFound):
|
| 207 |
+
nx.is_minimal_d_separator(asia_graph, {0}, {1}, {2})
|
| 208 |
+
with pytest.raises(nx.NodeNotFound):
|
| 209 |
+
nx.is_minimal_d_separator(asia_graph, 0, 1, 2)
|
| 210 |
+
with pytest.raises(nx.NodeNotFound):
|
| 211 |
+
nx.find_minimal_d_separator(asia_graph, {0}, {1})
|
| 212 |
+
with pytest.raises(nx.NodeNotFound):
|
| 213 |
+
nx.find_minimal_d_separator(asia_graph, 0, 1)
|
| 214 |
+
|
| 215 |
+
|
| 216 |
+
def test_nondisjoint_node_sets_raise_error(collider_graph):
|
| 217 |
+
"""
|
| 218 |
+
Test that error is raised when node sets aren't disjoint.
|
| 219 |
+
"""
|
| 220 |
+
with pytest.raises(nx.NetworkXError):
|
| 221 |
+
nx.is_d_separator(collider_graph, 0, 1, 0)
|
| 222 |
+
with pytest.raises(nx.NetworkXError):
|
| 223 |
+
nx.is_d_separator(collider_graph, 0, 2, 0)
|
| 224 |
+
with pytest.raises(nx.NetworkXError):
|
| 225 |
+
nx.is_d_separator(collider_graph, 0, 0, 1)
|
| 226 |
+
with pytest.raises(nx.NetworkXError):
|
| 227 |
+
nx.is_d_separator(collider_graph, 1, 0, 0)
|
| 228 |
+
with pytest.raises(nx.NetworkXError):
|
| 229 |
+
nx.find_minimal_d_separator(collider_graph, 0, 0)
|
| 230 |
+
with pytest.raises(nx.NetworkXError):
|
| 231 |
+
nx.find_minimal_d_separator(collider_graph, 0, 1, included=0)
|
| 232 |
+
with pytest.raises(nx.NetworkXError):
|
| 233 |
+
nx.find_minimal_d_separator(collider_graph, 1, 0, included=0)
|
| 234 |
+
with pytest.raises(nx.NetworkXError):
|
| 235 |
+
nx.is_minimal_d_separator(collider_graph, 0, 0, set())
|
| 236 |
+
with pytest.raises(nx.NetworkXError):
|
| 237 |
+
nx.is_minimal_d_separator(collider_graph, 0, 1, set(), included=0)
|
| 238 |
+
with pytest.raises(nx.NetworkXError):
|
| 239 |
+
nx.is_minimal_d_separator(collider_graph, 1, 0, set(), included=0)
|
| 240 |
+
|
| 241 |
+
|
| 242 |
+
def test_is_minimal_d_separator(
|
| 243 |
+
large_collider_graph,
|
| 244 |
+
chain_and_fork_graph,
|
| 245 |
+
no_separating_set_graph,
|
| 246 |
+
large_no_separating_set_graph,
|
| 247 |
+
collider_trek_graph,
|
| 248 |
+
):
|
| 249 |
+
# Case 1:
|
| 250 |
+
# create a graph A -> B <- C
|
| 251 |
+
# B -> D -> E;
|
| 252 |
+
# B -> F;
|
| 253 |
+
# G -> E;
|
| 254 |
+
assert not nx.is_d_separator(large_collider_graph, {"B"}, {"E"}, set())
|
| 255 |
+
|
| 256 |
+
# minimal set of the corresponding graph
|
| 257 |
+
# for B and E should be (D,)
|
| 258 |
+
Zmin = nx.find_minimal_d_separator(large_collider_graph, "B", "E")
|
| 259 |
+
# check that the minimal d-separator is a d-separating set
|
| 260 |
+
assert nx.is_d_separator(large_collider_graph, "B", "E", Zmin)
|
| 261 |
+
# the minimal separating set should also pass the test for minimality
|
| 262 |
+
assert nx.is_minimal_d_separator(large_collider_graph, "B", "E", Zmin)
|
| 263 |
+
# function should also work with set arguments
|
| 264 |
+
assert nx.is_minimal_d_separator(large_collider_graph, {"A", "B"}, {"G", "E"}, Zmin)
|
| 265 |
+
assert Zmin == {"D"}
|
| 266 |
+
|
| 267 |
+
# Case 2:
|
| 268 |
+
# create a graph A -> B -> C
|
| 269 |
+
# B -> D -> C;
|
| 270 |
+
assert not nx.is_d_separator(chain_and_fork_graph, {"A"}, {"C"}, set())
|
| 271 |
+
Zmin = nx.find_minimal_d_separator(chain_and_fork_graph, "A", "C")
|
| 272 |
+
|
| 273 |
+
# the minimal separating set should pass the test for minimality
|
| 274 |
+
assert nx.is_minimal_d_separator(chain_and_fork_graph, "A", "C", Zmin)
|
| 275 |
+
assert Zmin == {"B"}
|
| 276 |
+
Znotmin = Zmin.union({"D"})
|
| 277 |
+
assert not nx.is_minimal_d_separator(chain_and_fork_graph, "A", "C", Znotmin)
|
| 278 |
+
|
| 279 |
+
# Case 3:
|
| 280 |
+
# create a graph A -> B
|
| 281 |
+
|
| 282 |
+
# there is no m-separating set between A and B at all, so
|
| 283 |
+
# no minimal m-separating set can exist
|
| 284 |
+
assert not nx.is_d_separator(no_separating_set_graph, {"A"}, {"B"}, set())
|
| 285 |
+
assert nx.find_minimal_d_separator(no_separating_set_graph, "A", "B") is None
|
| 286 |
+
|
| 287 |
+
# Case 4:
|
| 288 |
+
# create a graph A -> B with A <- C -> B
|
| 289 |
+
|
| 290 |
+
# there is no m-separating set between A and B at all, so
|
| 291 |
+
# no minimal m-separating set can exist
|
| 292 |
+
# however, the algorithm will initially propose C as a
|
| 293 |
+
# minimal (but invalid) separating set
|
| 294 |
+
assert not nx.is_d_separator(large_no_separating_set_graph, {"A"}, {"B"}, {"C"})
|
| 295 |
+
assert nx.find_minimal_d_separator(large_no_separating_set_graph, "A", "B") is None
|
| 296 |
+
|
| 297 |
+
# Test `included` and `excluded` args
|
| 298 |
+
# create graph A -> B <- C -> D
|
| 299 |
+
assert nx.find_minimal_d_separator(collider_trek_graph, "A", "D", included="B") == {
|
| 300 |
+
"B",
|
| 301 |
+
"C",
|
| 302 |
+
}
|
| 303 |
+
assert (
|
| 304 |
+
nx.find_minimal_d_separator(
|
| 305 |
+
collider_trek_graph, "A", "D", included="B", restricted="B"
|
| 306 |
+
)
|
| 307 |
+
is None
|
| 308 |
+
)
|
| 309 |
+
|
| 310 |
+
|
| 311 |
+
def test_is_minimal_d_separator_checks_dsep():
|
| 312 |
+
"""Test that is_minimal_d_separator checks for d-separation as well."""
|
| 313 |
+
g = nx.DiGraph()
|
| 314 |
+
g.add_edges_from(
|
| 315 |
+
[
|
| 316 |
+
("A", "B"),
|
| 317 |
+
("A", "E"),
|
| 318 |
+
("B", "C"),
|
| 319 |
+
("B", "D"),
|
| 320 |
+
("D", "C"),
|
| 321 |
+
("D", "F"),
|
| 322 |
+
("E", "D"),
|
| 323 |
+
("E", "F"),
|
| 324 |
+
]
|
| 325 |
+
)
|
| 326 |
+
|
| 327 |
+
assert not nx.is_d_separator(g, {"C"}, {"F"}, {"D"})
|
| 328 |
+
|
| 329 |
+
# since {'D'} and {} are not d-separators, we return false
|
| 330 |
+
assert not nx.is_minimal_d_separator(g, "C", "F", {"D"})
|
| 331 |
+
assert not nx.is_minimal_d_separator(g, "C", "F", set())
|
| 332 |
+
|
| 333 |
+
|
| 334 |
+
def test__reachable(large_collider_graph):
|
| 335 |
+
reachable = nx.algorithms.d_separation._reachable
|
| 336 |
+
g = large_collider_graph
|
| 337 |
+
x = {"F", "D"}
|
| 338 |
+
ancestors = {"A", "B", "C", "D", "F"}
|
| 339 |
+
assert reachable(g, x, ancestors, {"B"}) == {"B", "F", "D"}
|
| 340 |
+
assert reachable(g, x, ancestors, set()) == ancestors
|
| 341 |
+
|
| 342 |
+
|
| 343 |
+
def test_deprecations():
|
| 344 |
+
G = nx.DiGraph([(0, 1), (1, 2)])
|
| 345 |
+
with pytest.deprecated_call():
|
| 346 |
+
nx.d_separated(G, 0, 2, {1})
|
| 347 |
+
with pytest.deprecated_call():
|
| 348 |
+
z = nx.minimal_d_separator(G, 0, 2)
|
code/LaDi-RL-old-qwen-cod/LaDi-RL-old-qwen-cod/venv/lib64/python3.10/site-packages/networkx/algorithms/tests/test_dag.py
ADDED
|
@@ -0,0 +1,835 @@
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|
| 1 |
+
from collections import deque
|
| 2 |
+
from itertools import combinations, permutations
|
| 3 |
+
|
| 4 |
+
import pytest
|
| 5 |
+
|
| 6 |
+
import networkx as nx
|
| 7 |
+
from networkx.utils import edges_equal, pairwise
|
| 8 |
+
|
| 9 |
+
|
| 10 |
+
# Recipe from the itertools documentation.
|
| 11 |
+
def _consume(iterator):
|
| 12 |
+
"Consume the iterator entirely."
|
| 13 |
+
# Feed the entire iterator into a zero-length deque.
|
| 14 |
+
deque(iterator, maxlen=0)
|
| 15 |
+
|
| 16 |
+
|
| 17 |
+
class TestDagLongestPath:
|
| 18 |
+
"""Unit tests computing the longest path in a directed acyclic graph."""
|
| 19 |
+
|
| 20 |
+
def test_empty(self):
|
| 21 |
+
G = nx.DiGraph()
|
| 22 |
+
assert nx.dag_longest_path(G) == []
|
| 23 |
+
|
| 24 |
+
def test_unweighted1(self):
|
| 25 |
+
edges = [(1, 2), (2, 3), (2, 4), (3, 5), (5, 6), (3, 7)]
|
| 26 |
+
G = nx.DiGraph(edges)
|
| 27 |
+
assert nx.dag_longest_path(G) == [1, 2, 3, 5, 6]
|
| 28 |
+
|
| 29 |
+
def test_unweighted2(self):
|
| 30 |
+
edges = [(1, 2), (2, 3), (3, 4), (4, 5), (1, 3), (1, 5), (3, 5)]
|
| 31 |
+
G = nx.DiGraph(edges)
|
| 32 |
+
assert nx.dag_longest_path(G) == [1, 2, 3, 4, 5]
|
| 33 |
+
|
| 34 |
+
def test_weighted(self):
|
| 35 |
+
G = nx.DiGraph()
|
| 36 |
+
edges = [(1, 2, -5), (2, 3, 1), (3, 4, 1), (4, 5, 0), (3, 5, 4), (1, 6, 2)]
|
| 37 |
+
G.add_weighted_edges_from(edges)
|
| 38 |
+
assert nx.dag_longest_path(G) == [2, 3, 5]
|
| 39 |
+
|
| 40 |
+
def test_undirected_not_implemented(self):
|
| 41 |
+
G = nx.Graph()
|
| 42 |
+
pytest.raises(nx.NetworkXNotImplemented, nx.dag_longest_path, G)
|
| 43 |
+
|
| 44 |
+
def test_unorderable_nodes(self):
|
| 45 |
+
"""Tests that computing the longest path does not depend on
|
| 46 |
+
nodes being orderable.
|
| 47 |
+
|
| 48 |
+
For more information, see issue #1989.
|
| 49 |
+
|
| 50 |
+
"""
|
| 51 |
+
# Create the directed path graph on four nodes in a diamond shape,
|
| 52 |
+
# with nodes represented as (unorderable) Python objects.
|
| 53 |
+
nodes = [object() for n in range(4)]
|
| 54 |
+
G = nx.DiGraph()
|
| 55 |
+
G.add_edge(nodes[0], nodes[1])
|
| 56 |
+
G.add_edge(nodes[0], nodes[2])
|
| 57 |
+
G.add_edge(nodes[2], nodes[3])
|
| 58 |
+
G.add_edge(nodes[1], nodes[3])
|
| 59 |
+
|
| 60 |
+
# this will raise NotImplementedError when nodes need to be ordered
|
| 61 |
+
nx.dag_longest_path(G)
|
| 62 |
+
|
| 63 |
+
def test_multigraph_unweighted(self):
|
| 64 |
+
edges = [(1, 2), (2, 3), (2, 3), (3, 4), (4, 5), (1, 3), (1, 5), (3, 5)]
|
| 65 |
+
G = nx.MultiDiGraph(edges)
|
| 66 |
+
assert nx.dag_longest_path(G) == [1, 2, 3, 4, 5]
|
| 67 |
+
|
| 68 |
+
def test_multigraph_weighted(self):
|
| 69 |
+
G = nx.MultiDiGraph()
|
| 70 |
+
edges = [
|
| 71 |
+
(1, 2, 2),
|
| 72 |
+
(2, 3, 2),
|
| 73 |
+
(1, 3, 1),
|
| 74 |
+
(1, 3, 5),
|
| 75 |
+
(1, 3, 2),
|
| 76 |
+
]
|
| 77 |
+
G.add_weighted_edges_from(edges)
|
| 78 |
+
assert nx.dag_longest_path(G) == [1, 3]
|
| 79 |
+
|
| 80 |
+
def test_multigraph_weighted_default_weight(self):
|
| 81 |
+
G = nx.MultiDiGraph([(1, 2), (2, 3)]) # Unweighted edges
|
| 82 |
+
G.add_weighted_edges_from([(1, 3, 1), (1, 3, 5), (1, 3, 2)])
|
| 83 |
+
|
| 84 |
+
# Default value for default weight is 1
|
| 85 |
+
assert nx.dag_longest_path(G) == [1, 3]
|
| 86 |
+
assert nx.dag_longest_path(G, default_weight=3) == [1, 2, 3]
|
| 87 |
+
|
| 88 |
+
|
| 89 |
+
class TestDagLongestPathLength:
|
| 90 |
+
"""Unit tests for computing the length of a longest path in a
|
| 91 |
+
directed acyclic graph.
|
| 92 |
+
|
| 93 |
+
"""
|
| 94 |
+
|
| 95 |
+
def test_unweighted(self):
|
| 96 |
+
edges = [(1, 2), (2, 3), (2, 4), (3, 5), (5, 6), (5, 7)]
|
| 97 |
+
G = nx.DiGraph(edges)
|
| 98 |
+
assert nx.dag_longest_path_length(G) == 4
|
| 99 |
+
|
| 100 |
+
edges = [(1, 2), (2, 3), (3, 4), (4, 5), (1, 3), (1, 5), (3, 5)]
|
| 101 |
+
G = nx.DiGraph(edges)
|
| 102 |
+
assert nx.dag_longest_path_length(G) == 4
|
| 103 |
+
|
| 104 |
+
# test degenerate graphs
|
| 105 |
+
G = nx.DiGraph()
|
| 106 |
+
G.add_node(1)
|
| 107 |
+
assert nx.dag_longest_path_length(G) == 0
|
| 108 |
+
|
| 109 |
+
def test_undirected_not_implemented(self):
|
| 110 |
+
G = nx.Graph()
|
| 111 |
+
pytest.raises(nx.NetworkXNotImplemented, nx.dag_longest_path_length, G)
|
| 112 |
+
|
| 113 |
+
def test_weighted(self):
|
| 114 |
+
edges = [(1, 2, -5), (2, 3, 1), (3, 4, 1), (4, 5, 0), (3, 5, 4), (1, 6, 2)]
|
| 115 |
+
G = nx.DiGraph()
|
| 116 |
+
G.add_weighted_edges_from(edges)
|
| 117 |
+
assert nx.dag_longest_path_length(G) == 5
|
| 118 |
+
|
| 119 |
+
def test_multigraph_unweighted(self):
|
| 120 |
+
edges = [(1, 2), (2, 3), (2, 3), (3, 4), (4, 5), (1, 3), (1, 5), (3, 5)]
|
| 121 |
+
G = nx.MultiDiGraph(edges)
|
| 122 |
+
assert nx.dag_longest_path_length(G) == 4
|
| 123 |
+
|
| 124 |
+
def test_multigraph_weighted(self):
|
| 125 |
+
G = nx.MultiDiGraph()
|
| 126 |
+
edges = [
|
| 127 |
+
(1, 2, 2),
|
| 128 |
+
(2, 3, 2),
|
| 129 |
+
(1, 3, 1),
|
| 130 |
+
(1, 3, 5),
|
| 131 |
+
(1, 3, 2),
|
| 132 |
+
]
|
| 133 |
+
G.add_weighted_edges_from(edges)
|
| 134 |
+
assert nx.dag_longest_path_length(G) == 5
|
| 135 |
+
|
| 136 |
+
|
| 137 |
+
class TestDAG:
|
| 138 |
+
@classmethod
|
| 139 |
+
def setup_class(cls):
|
| 140 |
+
pass
|
| 141 |
+
|
| 142 |
+
def test_topological_sort1(self):
|
| 143 |
+
DG = nx.DiGraph([(1, 2), (1, 3), (2, 3)])
|
| 144 |
+
|
| 145 |
+
for algorithm in [nx.topological_sort, nx.lexicographical_topological_sort]:
|
| 146 |
+
assert tuple(algorithm(DG)) == (1, 2, 3)
|
| 147 |
+
|
| 148 |
+
DG.add_edge(3, 2)
|
| 149 |
+
|
| 150 |
+
for algorithm in [nx.topological_sort, nx.lexicographical_topological_sort]:
|
| 151 |
+
pytest.raises(nx.NetworkXUnfeasible, _consume, algorithm(DG))
|
| 152 |
+
|
| 153 |
+
DG.remove_edge(2, 3)
|
| 154 |
+
|
| 155 |
+
for algorithm in [nx.topological_sort, nx.lexicographical_topological_sort]:
|
| 156 |
+
assert tuple(algorithm(DG)) == (1, 3, 2)
|
| 157 |
+
|
| 158 |
+
DG.remove_edge(3, 2)
|
| 159 |
+
|
| 160 |
+
assert tuple(nx.topological_sort(DG)) in {(1, 2, 3), (1, 3, 2)}
|
| 161 |
+
assert tuple(nx.lexicographical_topological_sort(DG)) == (1, 2, 3)
|
| 162 |
+
|
| 163 |
+
def test_is_directed_acyclic_graph(self):
|
| 164 |
+
G = nx.generators.complete_graph(2)
|
| 165 |
+
assert not nx.is_directed_acyclic_graph(G)
|
| 166 |
+
assert not nx.is_directed_acyclic_graph(G.to_directed())
|
| 167 |
+
assert not nx.is_directed_acyclic_graph(nx.Graph([(3, 4), (4, 5)]))
|
| 168 |
+
assert nx.is_directed_acyclic_graph(nx.DiGraph([(3, 4), (4, 5)]))
|
| 169 |
+
|
| 170 |
+
def test_topological_sort2(self):
|
| 171 |
+
DG = nx.DiGraph(
|
| 172 |
+
{
|
| 173 |
+
1: [2],
|
| 174 |
+
2: [3],
|
| 175 |
+
3: [4],
|
| 176 |
+
4: [5],
|
| 177 |
+
5: [1],
|
| 178 |
+
11: [12],
|
| 179 |
+
12: [13],
|
| 180 |
+
13: [14],
|
| 181 |
+
14: [15],
|
| 182 |
+
}
|
| 183 |
+
)
|
| 184 |
+
pytest.raises(nx.NetworkXUnfeasible, _consume, nx.topological_sort(DG))
|
| 185 |
+
|
| 186 |
+
assert not nx.is_directed_acyclic_graph(DG)
|
| 187 |
+
|
| 188 |
+
DG.remove_edge(1, 2)
|
| 189 |
+
_consume(nx.topological_sort(DG))
|
| 190 |
+
assert nx.is_directed_acyclic_graph(DG)
|
| 191 |
+
|
| 192 |
+
def test_topological_sort3(self):
|
| 193 |
+
DG = nx.DiGraph()
|
| 194 |
+
DG.add_edges_from([(1, i) for i in range(2, 5)])
|
| 195 |
+
DG.add_edges_from([(2, i) for i in range(5, 9)])
|
| 196 |
+
DG.add_edges_from([(6, i) for i in range(9, 12)])
|
| 197 |
+
DG.add_edges_from([(4, i) for i in range(12, 15)])
|
| 198 |
+
|
| 199 |
+
def validate(order):
|
| 200 |
+
assert isinstance(order, list)
|
| 201 |
+
assert set(order) == set(DG)
|
| 202 |
+
for u, v in combinations(order, 2):
|
| 203 |
+
assert not nx.has_path(DG, v, u)
|
| 204 |
+
|
| 205 |
+
validate(list(nx.topological_sort(DG)))
|
| 206 |
+
|
| 207 |
+
DG.add_edge(14, 1)
|
| 208 |
+
pytest.raises(nx.NetworkXUnfeasible, _consume, nx.topological_sort(DG))
|
| 209 |
+
|
| 210 |
+
def test_topological_sort4(self):
|
| 211 |
+
G = nx.Graph()
|
| 212 |
+
G.add_edge(1, 2)
|
| 213 |
+
# Only directed graphs can be topologically sorted.
|
| 214 |
+
pytest.raises(nx.NetworkXError, _consume, nx.topological_sort(G))
|
| 215 |
+
|
| 216 |
+
def test_topological_sort5(self):
|
| 217 |
+
G = nx.DiGraph()
|
| 218 |
+
G.add_edge(0, 1)
|
| 219 |
+
assert list(nx.topological_sort(G)) == [0, 1]
|
| 220 |
+
|
| 221 |
+
def test_topological_sort6(self):
|
| 222 |
+
for algorithm in [nx.topological_sort, nx.lexicographical_topological_sort]:
|
| 223 |
+
|
| 224 |
+
def runtime_error():
|
| 225 |
+
DG = nx.DiGraph([(1, 2), (2, 3), (3, 4)])
|
| 226 |
+
first = True
|
| 227 |
+
for x in algorithm(DG):
|
| 228 |
+
if first:
|
| 229 |
+
first = False
|
| 230 |
+
DG.add_edge(5 - x, 5)
|
| 231 |
+
|
| 232 |
+
def unfeasible_error():
|
| 233 |
+
DG = nx.DiGraph([(1, 2), (2, 3), (3, 4)])
|
| 234 |
+
first = True
|
| 235 |
+
for x in algorithm(DG):
|
| 236 |
+
if first:
|
| 237 |
+
first = False
|
| 238 |
+
DG.remove_node(4)
|
| 239 |
+
|
| 240 |
+
def runtime_error2():
|
| 241 |
+
DG = nx.DiGraph([(1, 2), (2, 3), (3, 4)])
|
| 242 |
+
first = True
|
| 243 |
+
for x in algorithm(DG):
|
| 244 |
+
if first:
|
| 245 |
+
first = False
|
| 246 |
+
DG.remove_node(2)
|
| 247 |
+
|
| 248 |
+
pytest.raises(RuntimeError, runtime_error)
|
| 249 |
+
pytest.raises(RuntimeError, runtime_error2)
|
| 250 |
+
pytest.raises(nx.NetworkXUnfeasible, unfeasible_error)
|
| 251 |
+
|
| 252 |
+
def test_all_topological_sorts_1(self):
|
| 253 |
+
DG = nx.DiGraph([(1, 2), (2, 3), (3, 4), (4, 5)])
|
| 254 |
+
assert list(nx.all_topological_sorts(DG)) == [[1, 2, 3, 4, 5]]
|
| 255 |
+
|
| 256 |
+
def test_all_topological_sorts_2(self):
|
| 257 |
+
DG = nx.DiGraph([(1, 3), (2, 1), (2, 4), (4, 3), (4, 5)])
|
| 258 |
+
assert sorted(nx.all_topological_sorts(DG)) == [
|
| 259 |
+
[2, 1, 4, 3, 5],
|
| 260 |
+
[2, 1, 4, 5, 3],
|
| 261 |
+
[2, 4, 1, 3, 5],
|
| 262 |
+
[2, 4, 1, 5, 3],
|
| 263 |
+
[2, 4, 5, 1, 3],
|
| 264 |
+
]
|
| 265 |
+
|
| 266 |
+
def test_all_topological_sorts_3(self):
|
| 267 |
+
def unfeasible():
|
| 268 |
+
DG = nx.DiGraph([(1, 2), (2, 3), (3, 4), (4, 2), (4, 5)])
|
| 269 |
+
# convert to list to execute generator
|
| 270 |
+
list(nx.all_topological_sorts(DG))
|
| 271 |
+
|
| 272 |
+
def not_implemented():
|
| 273 |
+
G = nx.Graph([(1, 2), (2, 3)])
|
| 274 |
+
# convert to list to execute generator
|
| 275 |
+
list(nx.all_topological_sorts(G))
|
| 276 |
+
|
| 277 |
+
def not_implemented_2():
|
| 278 |
+
G = nx.MultiGraph([(1, 2), (1, 2), (2, 3)])
|
| 279 |
+
list(nx.all_topological_sorts(G))
|
| 280 |
+
|
| 281 |
+
pytest.raises(nx.NetworkXUnfeasible, unfeasible)
|
| 282 |
+
pytest.raises(nx.NetworkXNotImplemented, not_implemented)
|
| 283 |
+
pytest.raises(nx.NetworkXNotImplemented, not_implemented_2)
|
| 284 |
+
|
| 285 |
+
def test_all_topological_sorts_4(self):
|
| 286 |
+
DG = nx.DiGraph()
|
| 287 |
+
for i in range(7):
|
| 288 |
+
DG.add_node(i)
|
| 289 |
+
assert sorted(map(list, permutations(DG.nodes))) == sorted(
|
| 290 |
+
nx.all_topological_sorts(DG)
|
| 291 |
+
)
|
| 292 |
+
|
| 293 |
+
def test_all_topological_sorts_multigraph_1(self):
|
| 294 |
+
DG = nx.MultiDiGraph([(1, 2), (1, 2), (2, 3), (3, 4), (3, 5), (3, 5), (3, 5)])
|
| 295 |
+
assert sorted(nx.all_topological_sorts(DG)) == sorted(
|
| 296 |
+
[[1, 2, 3, 4, 5], [1, 2, 3, 5, 4]]
|
| 297 |
+
)
|
| 298 |
+
|
| 299 |
+
def test_all_topological_sorts_multigraph_2(self):
|
| 300 |
+
N = 9
|
| 301 |
+
edges = []
|
| 302 |
+
for i in range(1, N):
|
| 303 |
+
edges.extend([(i, i + 1)] * i)
|
| 304 |
+
DG = nx.MultiDiGraph(edges)
|
| 305 |
+
assert list(nx.all_topological_sorts(DG)) == [list(range(1, N + 1))]
|
| 306 |
+
|
| 307 |
+
def test_ancestors(self):
|
| 308 |
+
G = nx.DiGraph()
|
| 309 |
+
ancestors = nx.algorithms.dag.ancestors
|
| 310 |
+
G.add_edges_from([(1, 2), (1, 3), (4, 2), (4, 3), (4, 5), (2, 6), (5, 6)])
|
| 311 |
+
assert ancestors(G, 6) == {1, 2, 4, 5}
|
| 312 |
+
assert ancestors(G, 3) == {1, 4}
|
| 313 |
+
assert ancestors(G, 1) == set()
|
| 314 |
+
pytest.raises(nx.NetworkXError, ancestors, G, 8)
|
| 315 |
+
|
| 316 |
+
def test_descendants(self):
|
| 317 |
+
G = nx.DiGraph()
|
| 318 |
+
descendants = nx.algorithms.dag.descendants
|
| 319 |
+
G.add_edges_from([(1, 2), (1, 3), (4, 2), (4, 3), (4, 5), (2, 6), (5, 6)])
|
| 320 |
+
assert descendants(G, 1) == {2, 3, 6}
|
| 321 |
+
assert descendants(G, 4) == {2, 3, 5, 6}
|
| 322 |
+
assert descendants(G, 3) == set()
|
| 323 |
+
pytest.raises(nx.NetworkXError, descendants, G, 8)
|
| 324 |
+
|
| 325 |
+
def test_transitive_closure(self):
|
| 326 |
+
G = nx.DiGraph([(1, 2), (2, 3), (3, 4)])
|
| 327 |
+
solution = [(1, 2), (1, 3), (1, 4), (2, 3), (2, 4), (3, 4)]
|
| 328 |
+
assert edges_equal(nx.transitive_closure(G).edges(), solution)
|
| 329 |
+
G = nx.DiGraph([(1, 2), (2, 3), (2, 4)])
|
| 330 |
+
solution = [(1, 2), (1, 3), (1, 4), (2, 3), (2, 4)]
|
| 331 |
+
assert edges_equal(nx.transitive_closure(G).edges(), solution)
|
| 332 |
+
G = nx.DiGraph([(1, 2), (2, 3), (3, 1)])
|
| 333 |
+
solution = [(1, 2), (2, 1), (2, 3), (3, 2), (1, 3), (3, 1)]
|
| 334 |
+
soln = sorted(solution + [(n, n) for n in G])
|
| 335 |
+
assert edges_equal(sorted(nx.transitive_closure(G).edges()), soln)
|
| 336 |
+
|
| 337 |
+
G = nx.Graph([(1, 2), (2, 3), (3, 4)])
|
| 338 |
+
solution = [(1, 2), (1, 3), (1, 4), (2, 3), (2, 4), (3, 4)]
|
| 339 |
+
assert edges_equal(sorted(nx.transitive_closure(G).edges()), solution)
|
| 340 |
+
|
| 341 |
+
G = nx.MultiGraph([(1, 2), (2, 3), (3, 4)])
|
| 342 |
+
solution = [(1, 2), (1, 3), (1, 4), (2, 3), (2, 4), (3, 4)]
|
| 343 |
+
assert edges_equal(sorted(nx.transitive_closure(G).edges()), solution)
|
| 344 |
+
|
| 345 |
+
G = nx.MultiDiGraph([(1, 2), (2, 3), (3, 4)])
|
| 346 |
+
solution = [(1, 2), (1, 3), (1, 4), (2, 3), (2, 4), (3, 4)]
|
| 347 |
+
assert edges_equal(sorted(nx.transitive_closure(G).edges()), solution)
|
| 348 |
+
|
| 349 |
+
# test if edge data is copied
|
| 350 |
+
G = nx.DiGraph([(1, 2, {"a": 3}), (2, 3, {"b": 0}), (3, 4)])
|
| 351 |
+
H = nx.transitive_closure(G)
|
| 352 |
+
for u, v in G.edges():
|
| 353 |
+
assert G.get_edge_data(u, v) == H.get_edge_data(u, v)
|
| 354 |
+
|
| 355 |
+
k = 10
|
| 356 |
+
G = nx.DiGraph((i, i + 1, {"f": "b", "weight": i}) for i in range(k))
|
| 357 |
+
H = nx.transitive_closure(G)
|
| 358 |
+
for u, v in G.edges():
|
| 359 |
+
assert G.get_edge_data(u, v) == H.get_edge_data(u, v)
|
| 360 |
+
|
| 361 |
+
G = nx.Graph()
|
| 362 |
+
with pytest.raises(nx.NetworkXError):
|
| 363 |
+
nx.transitive_closure(G, reflexive="wrong input")
|
| 364 |
+
|
| 365 |
+
def test_reflexive_transitive_closure(self):
|
| 366 |
+
G = nx.DiGraph([(1, 2), (2, 3), (3, 4)])
|
| 367 |
+
solution = [(1, 2), (1, 3), (1, 4), (2, 3), (2, 4), (3, 4)]
|
| 368 |
+
soln = sorted(solution + [(n, n) for n in G])
|
| 369 |
+
assert edges_equal(nx.transitive_closure(G).edges(), solution)
|
| 370 |
+
assert edges_equal(nx.transitive_closure(G, False).edges(), solution)
|
| 371 |
+
assert edges_equal(nx.transitive_closure(G, True).edges(), soln)
|
| 372 |
+
assert edges_equal(nx.transitive_closure(G, None).edges(), solution)
|
| 373 |
+
|
| 374 |
+
G = nx.DiGraph([(1, 2), (2, 3), (2, 4)])
|
| 375 |
+
solution = [(1, 2), (1, 3), (1, 4), (2, 3), (2, 4)]
|
| 376 |
+
soln = sorted(solution + [(n, n) for n in G])
|
| 377 |
+
assert edges_equal(nx.transitive_closure(G).edges(), solution)
|
| 378 |
+
assert edges_equal(nx.transitive_closure(G, False).edges(), solution)
|
| 379 |
+
assert edges_equal(nx.transitive_closure(G, True).edges(), soln)
|
| 380 |
+
assert edges_equal(nx.transitive_closure(G, None).edges(), solution)
|
| 381 |
+
|
| 382 |
+
G = nx.DiGraph([(1, 2), (2, 3), (3, 1)])
|
| 383 |
+
solution = sorted([(1, 2), (2, 1), (2, 3), (3, 2), (1, 3), (3, 1)])
|
| 384 |
+
soln = sorted(solution + [(n, n) for n in G])
|
| 385 |
+
assert edges_equal(sorted(nx.transitive_closure(G).edges()), soln)
|
| 386 |
+
assert edges_equal(sorted(nx.transitive_closure(G, False).edges()), soln)
|
| 387 |
+
assert edges_equal(sorted(nx.transitive_closure(G, None).edges()), solution)
|
| 388 |
+
assert edges_equal(sorted(nx.transitive_closure(G, True).edges()), soln)
|
| 389 |
+
|
| 390 |
+
G = nx.Graph([(1, 2), (2, 3), (3, 4)])
|
| 391 |
+
solution = [(1, 2), (1, 3), (1, 4), (2, 3), (2, 4), (3, 4)]
|
| 392 |
+
soln = sorted(solution + [(n, n) for n in G])
|
| 393 |
+
assert edges_equal(nx.transitive_closure(G).edges(), solution)
|
| 394 |
+
assert edges_equal(nx.transitive_closure(G, False).edges(), solution)
|
| 395 |
+
assert edges_equal(nx.transitive_closure(G, True).edges(), soln)
|
| 396 |
+
assert edges_equal(nx.transitive_closure(G, None).edges(), solution)
|
| 397 |
+
|
| 398 |
+
G = nx.MultiGraph([(1, 2), (2, 3), (3, 4)])
|
| 399 |
+
solution = [(1, 2), (1, 3), (1, 4), (2, 3), (2, 4), (3, 4)]
|
| 400 |
+
soln = sorted(solution + [(n, n) for n in G])
|
| 401 |
+
assert edges_equal(nx.transitive_closure(G).edges(), solution)
|
| 402 |
+
assert edges_equal(nx.transitive_closure(G, False).edges(), solution)
|
| 403 |
+
assert edges_equal(nx.transitive_closure(G, True).edges(), soln)
|
| 404 |
+
assert edges_equal(nx.transitive_closure(G, None).edges(), solution)
|
| 405 |
+
|
| 406 |
+
G = nx.MultiDiGraph([(1, 2), (2, 3), (3, 4)])
|
| 407 |
+
solution = [(1, 2), (1, 3), (1, 4), (2, 3), (2, 4), (3, 4)]
|
| 408 |
+
soln = sorted(solution + [(n, n) for n in G])
|
| 409 |
+
assert edges_equal(nx.transitive_closure(G).edges(), solution)
|
| 410 |
+
assert edges_equal(nx.transitive_closure(G, False).edges(), solution)
|
| 411 |
+
assert edges_equal(nx.transitive_closure(G, True).edges(), soln)
|
| 412 |
+
assert edges_equal(nx.transitive_closure(G, None).edges(), solution)
|
| 413 |
+
|
| 414 |
+
def test_transitive_closure_dag(self):
|
| 415 |
+
G = nx.DiGraph([(1, 2), (2, 3), (3, 4)])
|
| 416 |
+
transitive_closure = nx.algorithms.dag.transitive_closure_dag
|
| 417 |
+
solution = [(1, 2), (1, 3), (1, 4), (2, 3), (2, 4), (3, 4)]
|
| 418 |
+
assert edges_equal(transitive_closure(G).edges(), solution)
|
| 419 |
+
G = nx.DiGraph([(1, 2), (2, 3), (2, 4)])
|
| 420 |
+
solution = [(1, 2), (1, 3), (1, 4), (2, 3), (2, 4)]
|
| 421 |
+
assert edges_equal(transitive_closure(G).edges(), solution)
|
| 422 |
+
G = nx.Graph([(1, 2), (2, 3), (3, 4)])
|
| 423 |
+
pytest.raises(nx.NetworkXNotImplemented, transitive_closure, G)
|
| 424 |
+
|
| 425 |
+
# test if edge data is copied
|
| 426 |
+
G = nx.DiGraph([(1, 2, {"a": 3}), (2, 3, {"b": 0}), (3, 4)])
|
| 427 |
+
H = transitive_closure(G)
|
| 428 |
+
for u, v in G.edges():
|
| 429 |
+
assert G.get_edge_data(u, v) == H.get_edge_data(u, v)
|
| 430 |
+
|
| 431 |
+
k = 10
|
| 432 |
+
G = nx.DiGraph((i, i + 1, {"foo": "bar", "weight": i}) for i in range(k))
|
| 433 |
+
H = transitive_closure(G)
|
| 434 |
+
for u, v in G.edges():
|
| 435 |
+
assert G.get_edge_data(u, v) == H.get_edge_data(u, v)
|
| 436 |
+
|
| 437 |
+
def test_transitive_reduction(self):
|
| 438 |
+
G = nx.DiGraph([(1, 2), (1, 3), (1, 4), (2, 3), (2, 4), (3, 4)])
|
| 439 |
+
transitive_reduction = nx.algorithms.dag.transitive_reduction
|
| 440 |
+
solution = [(1, 2), (2, 3), (3, 4)]
|
| 441 |
+
assert edges_equal(transitive_reduction(G).edges(), solution)
|
| 442 |
+
G = nx.DiGraph([(1, 2), (1, 3), (1, 4), (2, 3), (2, 4)])
|
| 443 |
+
transitive_reduction = nx.algorithms.dag.transitive_reduction
|
| 444 |
+
solution = [(1, 2), (2, 3), (2, 4)]
|
| 445 |
+
assert edges_equal(transitive_reduction(G).edges(), solution)
|
| 446 |
+
G = nx.Graph([(1, 2), (2, 3), (3, 4)])
|
| 447 |
+
pytest.raises(nx.NetworkXNotImplemented, transitive_reduction, G)
|
| 448 |
+
|
| 449 |
+
def _check_antichains(self, solution, result):
|
| 450 |
+
sol = [frozenset(a) for a in solution]
|
| 451 |
+
res = [frozenset(a) for a in result]
|
| 452 |
+
assert set(sol) == set(res)
|
| 453 |
+
|
| 454 |
+
def test_antichains(self):
|
| 455 |
+
antichains = nx.algorithms.dag.antichains
|
| 456 |
+
G = nx.DiGraph([(1, 2), (2, 3), (3, 4)])
|
| 457 |
+
solution = [[], [4], [3], [2], [1]]
|
| 458 |
+
self._check_antichains(list(antichains(G)), solution)
|
| 459 |
+
G = nx.DiGraph([(1, 2), (2, 3), (2, 4), (3, 5), (5, 6), (5, 7)])
|
| 460 |
+
solution = [
|
| 461 |
+
[],
|
| 462 |
+
[4],
|
| 463 |
+
[7],
|
| 464 |
+
[7, 4],
|
| 465 |
+
[6],
|
| 466 |
+
[6, 4],
|
| 467 |
+
[6, 7],
|
| 468 |
+
[6, 7, 4],
|
| 469 |
+
[5],
|
| 470 |
+
[5, 4],
|
| 471 |
+
[3],
|
| 472 |
+
[3, 4],
|
| 473 |
+
[2],
|
| 474 |
+
[1],
|
| 475 |
+
]
|
| 476 |
+
self._check_antichains(list(antichains(G)), solution)
|
| 477 |
+
G = nx.DiGraph([(1, 2), (1, 3), (3, 4), (3, 5), (5, 6)])
|
| 478 |
+
solution = [
|
| 479 |
+
[],
|
| 480 |
+
[6],
|
| 481 |
+
[5],
|
| 482 |
+
[4],
|
| 483 |
+
[4, 6],
|
| 484 |
+
[4, 5],
|
| 485 |
+
[3],
|
| 486 |
+
[2],
|
| 487 |
+
[2, 6],
|
| 488 |
+
[2, 5],
|
| 489 |
+
[2, 4],
|
| 490 |
+
[2, 4, 6],
|
| 491 |
+
[2, 4, 5],
|
| 492 |
+
[2, 3],
|
| 493 |
+
[1],
|
| 494 |
+
]
|
| 495 |
+
self._check_antichains(list(antichains(G)), solution)
|
| 496 |
+
G = nx.DiGraph({0: [1, 2], 1: [4], 2: [3], 3: [4]})
|
| 497 |
+
solution = [[], [4], [3], [2], [1], [1, 3], [1, 2], [0]]
|
| 498 |
+
self._check_antichains(list(antichains(G)), solution)
|
| 499 |
+
G = nx.DiGraph()
|
| 500 |
+
self._check_antichains(list(antichains(G)), [[]])
|
| 501 |
+
G = nx.DiGraph()
|
| 502 |
+
G.add_nodes_from([0, 1, 2])
|
| 503 |
+
solution = [[], [0], [1], [1, 0], [2], [2, 0], [2, 1], [2, 1, 0]]
|
| 504 |
+
self._check_antichains(list(antichains(G)), solution)
|
| 505 |
+
|
| 506 |
+
def f(x):
|
| 507 |
+
return list(antichains(x))
|
| 508 |
+
|
| 509 |
+
G = nx.Graph([(1, 2), (2, 3), (3, 4)])
|
| 510 |
+
pytest.raises(nx.NetworkXNotImplemented, f, G)
|
| 511 |
+
G = nx.DiGraph([(1, 2), (2, 3), (3, 1)])
|
| 512 |
+
pytest.raises(nx.NetworkXUnfeasible, f, G)
|
| 513 |
+
|
| 514 |
+
def test_lexicographical_topological_sort(self):
|
| 515 |
+
G = nx.DiGraph([(1, 2), (2, 3), (1, 4), (1, 5), (2, 6)])
|
| 516 |
+
assert list(nx.lexicographical_topological_sort(G)) == [1, 2, 3, 4, 5, 6]
|
| 517 |
+
assert list(nx.lexicographical_topological_sort(G, key=lambda x: x)) == [
|
| 518 |
+
1,
|
| 519 |
+
2,
|
| 520 |
+
3,
|
| 521 |
+
4,
|
| 522 |
+
5,
|
| 523 |
+
6,
|
| 524 |
+
]
|
| 525 |
+
assert list(nx.lexicographical_topological_sort(G, key=lambda x: -x)) == [
|
| 526 |
+
1,
|
| 527 |
+
5,
|
| 528 |
+
4,
|
| 529 |
+
2,
|
| 530 |
+
6,
|
| 531 |
+
3,
|
| 532 |
+
]
|
| 533 |
+
|
| 534 |
+
def test_lexicographical_topological_sort2(self):
|
| 535 |
+
"""
|
| 536 |
+
Check the case of two or more nodes with same key value.
|
| 537 |
+
Want to avoid exception raised due to comparing nodes directly.
|
| 538 |
+
See Issue #3493
|
| 539 |
+
"""
|
| 540 |
+
|
| 541 |
+
class Test_Node:
|
| 542 |
+
def __init__(self, n):
|
| 543 |
+
self.label = n
|
| 544 |
+
self.priority = 1
|
| 545 |
+
|
| 546 |
+
def __repr__(self):
|
| 547 |
+
return f"Node({self.label})"
|
| 548 |
+
|
| 549 |
+
def sorting_key(node):
|
| 550 |
+
return node.priority
|
| 551 |
+
|
| 552 |
+
test_nodes = [Test_Node(n) for n in range(4)]
|
| 553 |
+
G = nx.DiGraph()
|
| 554 |
+
edges = [(0, 1), (0, 2), (0, 3), (2, 3)]
|
| 555 |
+
G.add_edges_from((test_nodes[a], test_nodes[b]) for a, b in edges)
|
| 556 |
+
|
| 557 |
+
sorting = list(nx.lexicographical_topological_sort(G, key=sorting_key))
|
| 558 |
+
assert sorting == test_nodes
|
| 559 |
+
|
| 560 |
+
|
| 561 |
+
def test_topological_generations():
|
| 562 |
+
G = nx.DiGraph(
|
| 563 |
+
{1: [2, 3], 2: [4, 5], 3: [7], 4: [], 5: [6, 7], 6: [], 7: []}
|
| 564 |
+
).reverse()
|
| 565 |
+
# order within each generation is inconsequential
|
| 566 |
+
generations = [sorted(gen) for gen in nx.topological_generations(G)]
|
| 567 |
+
expected = [[4, 6, 7], [3, 5], [2], [1]]
|
| 568 |
+
assert generations == expected
|
| 569 |
+
|
| 570 |
+
MG = nx.MultiDiGraph(G.edges)
|
| 571 |
+
MG.add_edge(2, 1)
|
| 572 |
+
generations = [sorted(gen) for gen in nx.topological_generations(MG)]
|
| 573 |
+
assert generations == expected
|
| 574 |
+
|
| 575 |
+
|
| 576 |
+
def test_topological_generations_empty():
|
| 577 |
+
G = nx.DiGraph()
|
| 578 |
+
assert list(nx.topological_generations(G)) == []
|
| 579 |
+
|
| 580 |
+
|
| 581 |
+
def test_topological_generations_cycle():
|
| 582 |
+
G = nx.DiGraph([[2, 1], [3, 1], [1, 2]])
|
| 583 |
+
with pytest.raises(nx.NetworkXUnfeasible):
|
| 584 |
+
list(nx.topological_generations(G))
|
| 585 |
+
|
| 586 |
+
|
| 587 |
+
def test_is_aperiodic_cycle():
|
| 588 |
+
G = nx.DiGraph()
|
| 589 |
+
nx.add_cycle(G, [1, 2, 3, 4])
|
| 590 |
+
assert not nx.is_aperiodic(G)
|
| 591 |
+
|
| 592 |
+
|
| 593 |
+
def test_is_aperiodic_cycle2():
|
| 594 |
+
G = nx.DiGraph()
|
| 595 |
+
nx.add_cycle(G, [1, 2, 3, 4])
|
| 596 |
+
nx.add_cycle(G, [3, 4, 5, 6, 7])
|
| 597 |
+
assert nx.is_aperiodic(G)
|
| 598 |
+
|
| 599 |
+
|
| 600 |
+
def test_is_aperiodic_cycle3():
|
| 601 |
+
G = nx.DiGraph()
|
| 602 |
+
nx.add_cycle(G, [1, 2, 3, 4])
|
| 603 |
+
nx.add_cycle(G, [3, 4, 5, 6])
|
| 604 |
+
assert not nx.is_aperiodic(G)
|
| 605 |
+
|
| 606 |
+
|
| 607 |
+
def test_is_aperiodic_cycle4():
|
| 608 |
+
G = nx.DiGraph()
|
| 609 |
+
nx.add_cycle(G, [1, 2, 3, 4])
|
| 610 |
+
G.add_edge(1, 3)
|
| 611 |
+
assert nx.is_aperiodic(G)
|
| 612 |
+
|
| 613 |
+
|
| 614 |
+
def test_is_aperiodic_selfloop():
|
| 615 |
+
G = nx.DiGraph()
|
| 616 |
+
nx.add_cycle(G, [1, 2, 3, 4])
|
| 617 |
+
G.add_edge(1, 1)
|
| 618 |
+
assert nx.is_aperiodic(G)
|
| 619 |
+
|
| 620 |
+
|
| 621 |
+
def test_is_aperiodic_undirected_raises():
|
| 622 |
+
G = nx.Graph()
|
| 623 |
+
pytest.raises(nx.NetworkXError, nx.is_aperiodic, G)
|
| 624 |
+
|
| 625 |
+
|
| 626 |
+
def test_is_aperiodic_empty_graph():
|
| 627 |
+
G = nx.empty_graph(create_using=nx.DiGraph)
|
| 628 |
+
with pytest.raises(nx.NetworkXPointlessConcept, match="Graph has no nodes."):
|
| 629 |
+
nx.is_aperiodic(G)
|
| 630 |
+
|
| 631 |
+
|
| 632 |
+
def test_is_aperiodic_bipartite():
|
| 633 |
+
# Bipartite graph
|
| 634 |
+
G = nx.DiGraph(nx.davis_southern_women_graph())
|
| 635 |
+
assert not nx.is_aperiodic(G)
|
| 636 |
+
|
| 637 |
+
|
| 638 |
+
def test_is_aperiodic_rary_tree():
|
| 639 |
+
G = nx.full_rary_tree(3, 27, create_using=nx.DiGraph())
|
| 640 |
+
assert not nx.is_aperiodic(G)
|
| 641 |
+
|
| 642 |
+
|
| 643 |
+
def test_is_aperiodic_disconnected():
|
| 644 |
+
# disconnected graph
|
| 645 |
+
G = nx.DiGraph()
|
| 646 |
+
nx.add_cycle(G, [1, 2, 3, 4])
|
| 647 |
+
nx.add_cycle(G, [5, 6, 7, 8])
|
| 648 |
+
assert not nx.is_aperiodic(G)
|
| 649 |
+
G.add_edge(1, 3)
|
| 650 |
+
G.add_edge(5, 7)
|
| 651 |
+
assert nx.is_aperiodic(G)
|
| 652 |
+
|
| 653 |
+
|
| 654 |
+
def test_is_aperiodic_disconnected2():
|
| 655 |
+
G = nx.DiGraph()
|
| 656 |
+
nx.add_cycle(G, [0, 1, 2])
|
| 657 |
+
G.add_edge(3, 3)
|
| 658 |
+
assert not nx.is_aperiodic(G)
|
| 659 |
+
|
| 660 |
+
|
| 661 |
+
class TestDagToBranching:
|
| 662 |
+
"""Unit tests for the :func:`networkx.dag_to_branching` function."""
|
| 663 |
+
|
| 664 |
+
def test_single_root(self):
|
| 665 |
+
"""Tests that a directed acyclic graph with a single degree
|
| 666 |
+
zero node produces an arborescence.
|
| 667 |
+
|
| 668 |
+
"""
|
| 669 |
+
G = nx.DiGraph([(0, 1), (0, 2), (1, 3), (2, 3)])
|
| 670 |
+
B = nx.dag_to_branching(G)
|
| 671 |
+
expected = nx.DiGraph([(0, 1), (1, 3), (0, 2), (2, 4)])
|
| 672 |
+
assert nx.is_arborescence(B)
|
| 673 |
+
assert nx.is_isomorphic(B, expected)
|
| 674 |
+
|
| 675 |
+
def test_multiple_roots(self):
|
| 676 |
+
"""Tests that a directed acyclic graph with multiple degree zero
|
| 677 |
+
nodes creates an arborescence with multiple (weakly) connected
|
| 678 |
+
components.
|
| 679 |
+
|
| 680 |
+
"""
|
| 681 |
+
G = nx.DiGraph([(0, 1), (0, 2), (1, 3), (2, 3), (5, 2)])
|
| 682 |
+
B = nx.dag_to_branching(G)
|
| 683 |
+
expected = nx.DiGraph([(0, 1), (1, 3), (0, 2), (2, 4), (5, 6), (6, 7)])
|
| 684 |
+
assert nx.is_branching(B)
|
| 685 |
+
assert not nx.is_arborescence(B)
|
| 686 |
+
assert nx.is_isomorphic(B, expected)
|
| 687 |
+
|
| 688 |
+
# # Attributes are not copied by this function. If they were, this would
|
| 689 |
+
# # be a good test to uncomment.
|
| 690 |
+
# def test_copy_attributes(self):
|
| 691 |
+
# """Tests that node attributes are copied in the branching."""
|
| 692 |
+
# G = nx.DiGraph([(0, 1), (0, 2), (1, 3), (2, 3)])
|
| 693 |
+
# for v in G:
|
| 694 |
+
# G.node[v]['label'] = str(v)
|
| 695 |
+
# B = nx.dag_to_branching(G)
|
| 696 |
+
# # Determine the root node of the branching.
|
| 697 |
+
# root = next(v for v, d in B.in_degree() if d == 0)
|
| 698 |
+
# assert_equal(B.node[root]['label'], '0')
|
| 699 |
+
# children = B[root]
|
| 700 |
+
# # Get the left and right children, nodes 1 and 2, respectively.
|
| 701 |
+
# left, right = sorted(children, key=lambda v: B.node[v]['label'])
|
| 702 |
+
# assert_equal(B.node[left]['label'], '1')
|
| 703 |
+
# assert_equal(B.node[right]['label'], '2')
|
| 704 |
+
# # Get the left grandchild.
|
| 705 |
+
# children = B[left]
|
| 706 |
+
# assert_equal(len(children), 1)
|
| 707 |
+
# left_grandchild = arbitrary_element(children)
|
| 708 |
+
# assert_equal(B.node[left_grandchild]['label'], '3')
|
| 709 |
+
# # Get the right grandchild.
|
| 710 |
+
# children = B[right]
|
| 711 |
+
# assert_equal(len(children), 1)
|
| 712 |
+
# right_grandchild = arbitrary_element(children)
|
| 713 |
+
# assert_equal(B.node[right_grandchild]['label'], '3')
|
| 714 |
+
|
| 715 |
+
def test_already_arborescence(self):
|
| 716 |
+
"""Tests that a directed acyclic graph that is already an
|
| 717 |
+
arborescence produces an isomorphic arborescence as output.
|
| 718 |
+
|
| 719 |
+
"""
|
| 720 |
+
A = nx.balanced_tree(2, 2, create_using=nx.DiGraph())
|
| 721 |
+
B = nx.dag_to_branching(A)
|
| 722 |
+
assert nx.is_isomorphic(A, B)
|
| 723 |
+
|
| 724 |
+
def test_already_branching(self):
|
| 725 |
+
"""Tests that a directed acyclic graph that is already a
|
| 726 |
+
branching produces an isomorphic branching as output.
|
| 727 |
+
|
| 728 |
+
"""
|
| 729 |
+
T1 = nx.balanced_tree(2, 2, create_using=nx.DiGraph())
|
| 730 |
+
T2 = nx.balanced_tree(2, 2, create_using=nx.DiGraph())
|
| 731 |
+
G = nx.disjoint_union(T1, T2)
|
| 732 |
+
B = nx.dag_to_branching(G)
|
| 733 |
+
assert nx.is_isomorphic(G, B)
|
| 734 |
+
|
| 735 |
+
def test_not_acyclic(self):
|
| 736 |
+
"""Tests that a non-acyclic graph causes an exception."""
|
| 737 |
+
with pytest.raises(nx.HasACycle):
|
| 738 |
+
G = nx.DiGraph(pairwise("abc", cyclic=True))
|
| 739 |
+
nx.dag_to_branching(G)
|
| 740 |
+
|
| 741 |
+
def test_undirected(self):
|
| 742 |
+
with pytest.raises(nx.NetworkXNotImplemented):
|
| 743 |
+
nx.dag_to_branching(nx.Graph())
|
| 744 |
+
|
| 745 |
+
def test_multigraph(self):
|
| 746 |
+
with pytest.raises(nx.NetworkXNotImplemented):
|
| 747 |
+
nx.dag_to_branching(nx.MultiGraph())
|
| 748 |
+
|
| 749 |
+
def test_multidigraph(self):
|
| 750 |
+
with pytest.raises(nx.NetworkXNotImplemented):
|
| 751 |
+
nx.dag_to_branching(nx.MultiDiGraph())
|
| 752 |
+
|
| 753 |
+
|
| 754 |
+
def test_ancestors_descendants_undirected():
|
| 755 |
+
"""Regression test to ensure ancestors and descendants work as expected on
|
| 756 |
+
undirected graphs."""
|
| 757 |
+
G = nx.path_graph(5)
|
| 758 |
+
nx.ancestors(G, 2) == nx.descendants(G, 2) == {0, 1, 3, 4}
|
| 759 |
+
|
| 760 |
+
|
| 761 |
+
def test_compute_v_structures_raise():
|
| 762 |
+
G = nx.Graph()
|
| 763 |
+
with pytest.raises(nx.NetworkXNotImplemented, match="for undirected type"):
|
| 764 |
+
nx.compute_v_structures(G)
|
| 765 |
+
|
| 766 |
+
|
| 767 |
+
def test_compute_v_structures():
|
| 768 |
+
edges = [(0, 1), (0, 2), (3, 2)]
|
| 769 |
+
G = nx.DiGraph(edges)
|
| 770 |
+
|
| 771 |
+
v_structs = set(nx.compute_v_structures(G))
|
| 772 |
+
assert len(v_structs) == 1
|
| 773 |
+
assert (0, 2, 3) in v_structs
|
| 774 |
+
|
| 775 |
+
edges = [("A", "B"), ("C", "B"), ("B", "D"), ("D", "E"), ("G", "E")]
|
| 776 |
+
G = nx.DiGraph(edges)
|
| 777 |
+
v_structs = set(nx.compute_v_structures(G))
|
| 778 |
+
assert len(v_structs) == 2
|
| 779 |
+
|
| 780 |
+
|
| 781 |
+
def test_compute_v_structures_deprecated():
|
| 782 |
+
G = nx.DiGraph()
|
| 783 |
+
with pytest.deprecated_call():
|
| 784 |
+
nx.compute_v_structures(G)
|
| 785 |
+
|
| 786 |
+
|
| 787 |
+
def test_v_structures_raise():
|
| 788 |
+
G = nx.Graph()
|
| 789 |
+
with pytest.raises(nx.NetworkXNotImplemented, match="for undirected type"):
|
| 790 |
+
nx.dag.v_structures(G)
|
| 791 |
+
|
| 792 |
+
|
| 793 |
+
@pytest.mark.parametrize(
|
| 794 |
+
("edgelist", "expected"),
|
| 795 |
+
(
|
| 796 |
+
(
|
| 797 |
+
[(0, 1), (0, 2), (3, 2)],
|
| 798 |
+
{(0, 2, 3)},
|
| 799 |
+
),
|
| 800 |
+
(
|
| 801 |
+
[("A", "B"), ("C", "B"), ("D", "G"), ("D", "E"), ("G", "E")],
|
| 802 |
+
{("A", "B", "C")},
|
| 803 |
+
),
|
| 804 |
+
([(0, 1), (2, 1), (0, 2)], set()), # adjacent parents case: see gh-7385
|
| 805 |
+
),
|
| 806 |
+
)
|
| 807 |
+
def test_v_structures(edgelist, expected):
|
| 808 |
+
G = nx.DiGraph(edgelist)
|
| 809 |
+
v_structs = set(nx.dag.v_structures(G))
|
| 810 |
+
assert v_structs == expected
|
| 811 |
+
|
| 812 |
+
|
| 813 |
+
def test_colliders_raise():
|
| 814 |
+
G = nx.Graph()
|
| 815 |
+
with pytest.raises(nx.NetworkXNotImplemented, match="for undirected type"):
|
| 816 |
+
nx.dag.colliders(G)
|
| 817 |
+
|
| 818 |
+
|
| 819 |
+
@pytest.mark.parametrize(
|
| 820 |
+
("edgelist", "expected"),
|
| 821 |
+
(
|
| 822 |
+
(
|
| 823 |
+
[(0, 1), (0, 2), (3, 2)],
|
| 824 |
+
{(0, 2, 3)},
|
| 825 |
+
),
|
| 826 |
+
(
|
| 827 |
+
[("A", "B"), ("C", "B"), ("D", "G"), ("D", "E"), ("G", "E")],
|
| 828 |
+
{("A", "B", "C"), ("D", "E", "G")},
|
| 829 |
+
),
|
| 830 |
+
),
|
| 831 |
+
)
|
| 832 |
+
def test_colliders(edgelist, expected):
|
| 833 |
+
G = nx.DiGraph(edgelist)
|
| 834 |
+
colliders = set(nx.dag.colliders(G))
|
| 835 |
+
assert colliders == expected
|
code/LaDi-RL-old-qwen-cod/LaDi-RL-old-qwen-cod/venv/lib64/python3.10/site-packages/networkx/algorithms/tests/test_distance_measures.py
ADDED
|
@@ -0,0 +1,774 @@
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|
| 1 |
+
import math
|
| 2 |
+
from random import Random
|
| 3 |
+
|
| 4 |
+
import pytest
|
| 5 |
+
|
| 6 |
+
import networkx as nx
|
| 7 |
+
from networkx import convert_node_labels_to_integers as cnlti
|
| 8 |
+
from networkx.algorithms.distance_measures import _extrema_bounding
|
| 9 |
+
|
| 10 |
+
|
| 11 |
+
def test__extrema_bounding_invalid_compute_kwarg():
|
| 12 |
+
G = nx.path_graph(3)
|
| 13 |
+
with pytest.raises(ValueError, match="compute must be one of"):
|
| 14 |
+
_extrema_bounding(G, compute="spam")
|
| 15 |
+
|
| 16 |
+
|
| 17 |
+
class TestDistance:
|
| 18 |
+
def setup_method(self):
|
| 19 |
+
G = cnlti(nx.grid_2d_graph(4, 4), first_label=1, ordering="sorted")
|
| 20 |
+
self.G = G
|
| 21 |
+
|
| 22 |
+
def test_eccentricity(self):
|
| 23 |
+
assert nx.eccentricity(self.G, 1) == 6
|
| 24 |
+
e = nx.eccentricity(self.G)
|
| 25 |
+
assert e[1] == 6
|
| 26 |
+
|
| 27 |
+
sp = dict(nx.shortest_path_length(self.G))
|
| 28 |
+
e = nx.eccentricity(self.G, sp=sp)
|
| 29 |
+
assert e[1] == 6
|
| 30 |
+
|
| 31 |
+
e = nx.eccentricity(self.G, v=1)
|
| 32 |
+
assert e == 6
|
| 33 |
+
|
| 34 |
+
# This behavior changed in version 1.8 (ticket #739)
|
| 35 |
+
e = nx.eccentricity(self.G, v=[1, 1])
|
| 36 |
+
assert e[1] == 6
|
| 37 |
+
e = nx.eccentricity(self.G, v=[1, 2])
|
| 38 |
+
assert e[1] == 6
|
| 39 |
+
|
| 40 |
+
# test against graph with one node
|
| 41 |
+
G = nx.path_graph(1)
|
| 42 |
+
e = nx.eccentricity(G)
|
| 43 |
+
assert e[0] == 0
|
| 44 |
+
e = nx.eccentricity(G, v=0)
|
| 45 |
+
assert e == 0
|
| 46 |
+
pytest.raises(nx.NetworkXError, nx.eccentricity, G, 1)
|
| 47 |
+
|
| 48 |
+
# test against empty graph
|
| 49 |
+
G = nx.empty_graph()
|
| 50 |
+
e = nx.eccentricity(G)
|
| 51 |
+
assert e == {}
|
| 52 |
+
|
| 53 |
+
def test_diameter(self):
|
| 54 |
+
assert nx.diameter(self.G) == 6
|
| 55 |
+
|
| 56 |
+
def test_harmonic_diameter(self):
|
| 57 |
+
assert abs(nx.harmonic_diameter(self.G) - 2.0477815699658715) < 1e-12
|
| 58 |
+
|
| 59 |
+
def test_harmonic_diameter_empty(self):
|
| 60 |
+
assert math.isnan(nx.harmonic_diameter(nx.empty_graph()))
|
| 61 |
+
|
| 62 |
+
def test_harmonic_diameter_single_node(self):
|
| 63 |
+
assert math.isnan(nx.harmonic_diameter(nx.empty_graph(1)))
|
| 64 |
+
|
| 65 |
+
def test_harmonic_diameter_discrete(self):
|
| 66 |
+
assert math.isinf(nx.harmonic_diameter(nx.empty_graph(3)))
|
| 67 |
+
|
| 68 |
+
def test_harmonic_diameter_not_strongly_connected(self):
|
| 69 |
+
DG = nx.DiGraph()
|
| 70 |
+
DG.add_edge(0, 1)
|
| 71 |
+
assert nx.harmonic_diameter(DG) == 2
|
| 72 |
+
|
| 73 |
+
def test_radius(self):
|
| 74 |
+
assert nx.radius(self.G) == 4
|
| 75 |
+
|
| 76 |
+
def test_periphery(self):
|
| 77 |
+
assert set(nx.periphery(self.G)) == {1, 4, 13, 16}
|
| 78 |
+
|
| 79 |
+
def test_center(self):
|
| 80 |
+
assert set(nx.center(self.G)) == {6, 7, 10, 11}
|
| 81 |
+
|
| 82 |
+
def test_bound_diameter(self):
|
| 83 |
+
assert nx.diameter(self.G, usebounds=True) == 6
|
| 84 |
+
|
| 85 |
+
def test_bound_radius(self):
|
| 86 |
+
assert nx.radius(self.G, usebounds=True) == 4
|
| 87 |
+
|
| 88 |
+
def test_bound_periphery(self):
|
| 89 |
+
result = {1, 4, 13, 16}
|
| 90 |
+
assert set(nx.periphery(self.G, usebounds=True)) == result
|
| 91 |
+
|
| 92 |
+
def test_bound_center(self):
|
| 93 |
+
result = {6, 7, 10, 11}
|
| 94 |
+
assert set(nx.center(self.G, usebounds=True)) == result
|
| 95 |
+
|
| 96 |
+
def test_radius_exception(self):
|
| 97 |
+
G = nx.Graph()
|
| 98 |
+
G.add_edge(1, 2)
|
| 99 |
+
G.add_edge(3, 4)
|
| 100 |
+
pytest.raises(nx.NetworkXError, nx.diameter, G)
|
| 101 |
+
|
| 102 |
+
def test_eccentricity_infinite(self):
|
| 103 |
+
with pytest.raises(nx.NetworkXError):
|
| 104 |
+
G = nx.Graph([(1, 2), (3, 4)])
|
| 105 |
+
e = nx.eccentricity(G)
|
| 106 |
+
|
| 107 |
+
def test_eccentricity_undirected_not_connected(self):
|
| 108 |
+
with pytest.raises(nx.NetworkXError):
|
| 109 |
+
G = nx.Graph([(1, 2), (3, 4)])
|
| 110 |
+
e = nx.eccentricity(G, sp=1)
|
| 111 |
+
|
| 112 |
+
def test_eccentricity_directed_weakly_connected(self):
|
| 113 |
+
with pytest.raises(nx.NetworkXError):
|
| 114 |
+
DG = nx.DiGraph([(1, 2), (1, 3)])
|
| 115 |
+
nx.eccentricity(DG)
|
| 116 |
+
|
| 117 |
+
|
| 118 |
+
class TestWeightedDistance:
|
| 119 |
+
def setup_method(self):
|
| 120 |
+
G = nx.Graph()
|
| 121 |
+
G.add_edge(0, 1, weight=0.6, cost=0.6, high_cost=6)
|
| 122 |
+
G.add_edge(0, 2, weight=0.2, cost=0.2, high_cost=2)
|
| 123 |
+
G.add_edge(2, 3, weight=0.1, cost=0.1, high_cost=1)
|
| 124 |
+
G.add_edge(2, 4, weight=0.7, cost=0.7, high_cost=7)
|
| 125 |
+
G.add_edge(2, 5, weight=0.9, cost=0.9, high_cost=9)
|
| 126 |
+
G.add_edge(1, 5, weight=0.3, cost=0.3, high_cost=3)
|
| 127 |
+
self.G = G
|
| 128 |
+
self.weight_fn = lambda v, u, e: 2
|
| 129 |
+
|
| 130 |
+
def test_eccentricity_weight_None(self):
|
| 131 |
+
assert nx.eccentricity(self.G, 1, weight=None) == 3
|
| 132 |
+
e = nx.eccentricity(self.G, weight=None)
|
| 133 |
+
assert e[1] == 3
|
| 134 |
+
|
| 135 |
+
e = nx.eccentricity(self.G, v=1, weight=None)
|
| 136 |
+
assert e == 3
|
| 137 |
+
|
| 138 |
+
# This behavior changed in version 1.8 (ticket #739)
|
| 139 |
+
e = nx.eccentricity(self.G, v=[1, 1], weight=None)
|
| 140 |
+
assert e[1] == 3
|
| 141 |
+
e = nx.eccentricity(self.G, v=[1, 2], weight=None)
|
| 142 |
+
assert e[1] == 3
|
| 143 |
+
|
| 144 |
+
def test_eccentricity_weight_attr(self):
|
| 145 |
+
assert nx.eccentricity(self.G, 1, weight="weight") == 1.5
|
| 146 |
+
e = nx.eccentricity(self.G, weight="weight")
|
| 147 |
+
assert (
|
| 148 |
+
e
|
| 149 |
+
== nx.eccentricity(self.G, weight="cost")
|
| 150 |
+
!= nx.eccentricity(self.G, weight="high_cost")
|
| 151 |
+
)
|
| 152 |
+
assert e[1] == 1.5
|
| 153 |
+
|
| 154 |
+
e = nx.eccentricity(self.G, v=1, weight="weight")
|
| 155 |
+
assert e == 1.5
|
| 156 |
+
|
| 157 |
+
# This behavior changed in version 1.8 (ticket #739)
|
| 158 |
+
e = nx.eccentricity(self.G, v=[1, 1], weight="weight")
|
| 159 |
+
assert e[1] == 1.5
|
| 160 |
+
e = nx.eccentricity(self.G, v=[1, 2], weight="weight")
|
| 161 |
+
assert e[1] == 1.5
|
| 162 |
+
|
| 163 |
+
def test_eccentricity_weight_fn(self):
|
| 164 |
+
assert nx.eccentricity(self.G, 1, weight=self.weight_fn) == 6
|
| 165 |
+
e = nx.eccentricity(self.G, weight=self.weight_fn)
|
| 166 |
+
assert e[1] == 6
|
| 167 |
+
|
| 168 |
+
e = nx.eccentricity(self.G, v=1, weight=self.weight_fn)
|
| 169 |
+
assert e == 6
|
| 170 |
+
|
| 171 |
+
# This behavior changed in version 1.8 (ticket #739)
|
| 172 |
+
e = nx.eccentricity(self.G, v=[1, 1], weight=self.weight_fn)
|
| 173 |
+
assert e[1] == 6
|
| 174 |
+
e = nx.eccentricity(self.G, v=[1, 2], weight=self.weight_fn)
|
| 175 |
+
assert e[1] == 6
|
| 176 |
+
|
| 177 |
+
def test_diameter_weight_None(self):
|
| 178 |
+
assert nx.diameter(self.G, weight=None) == 3
|
| 179 |
+
|
| 180 |
+
def test_diameter_weight_attr(self):
|
| 181 |
+
assert (
|
| 182 |
+
nx.diameter(self.G, weight="weight")
|
| 183 |
+
== nx.diameter(self.G, weight="cost")
|
| 184 |
+
== 1.6
|
| 185 |
+
!= nx.diameter(self.G, weight="high_cost")
|
| 186 |
+
)
|
| 187 |
+
|
| 188 |
+
def test_diameter_weight_fn(self):
|
| 189 |
+
assert nx.diameter(self.G, weight=self.weight_fn) == 6
|
| 190 |
+
|
| 191 |
+
def test_radius_weight_None(self):
|
| 192 |
+
assert pytest.approx(nx.radius(self.G, weight=None)) == 2
|
| 193 |
+
|
| 194 |
+
def test_radius_weight_attr(self):
|
| 195 |
+
assert (
|
| 196 |
+
pytest.approx(nx.radius(self.G, weight="weight"))
|
| 197 |
+
== pytest.approx(nx.radius(self.G, weight="cost"))
|
| 198 |
+
== 0.9
|
| 199 |
+
!= nx.radius(self.G, weight="high_cost")
|
| 200 |
+
)
|
| 201 |
+
|
| 202 |
+
def test_radius_weight_fn(self):
|
| 203 |
+
assert nx.radius(self.G, weight=self.weight_fn) == 4
|
| 204 |
+
|
| 205 |
+
def test_periphery_weight_None(self):
|
| 206 |
+
for v in set(nx.periphery(self.G, weight=None)):
|
| 207 |
+
assert nx.eccentricity(self.G, v, weight=None) == nx.diameter(
|
| 208 |
+
self.G, weight=None
|
| 209 |
+
)
|
| 210 |
+
|
| 211 |
+
def test_periphery_weight_attr(self):
|
| 212 |
+
periphery = set(nx.periphery(self.G, weight="weight"))
|
| 213 |
+
assert (
|
| 214 |
+
periphery
|
| 215 |
+
== set(nx.periphery(self.G, weight="cost"))
|
| 216 |
+
== set(nx.periphery(self.G, weight="high_cost"))
|
| 217 |
+
)
|
| 218 |
+
for v in periphery:
|
| 219 |
+
assert (
|
| 220 |
+
nx.eccentricity(self.G, v, weight="high_cost")
|
| 221 |
+
!= nx.eccentricity(self.G, v, weight="weight")
|
| 222 |
+
== nx.eccentricity(self.G, v, weight="cost")
|
| 223 |
+
== nx.diameter(self.G, weight="weight")
|
| 224 |
+
== nx.diameter(self.G, weight="cost")
|
| 225 |
+
!= nx.diameter(self.G, weight="high_cost")
|
| 226 |
+
)
|
| 227 |
+
assert nx.eccentricity(self.G, v, weight="high_cost") == nx.diameter(
|
| 228 |
+
self.G, weight="high_cost"
|
| 229 |
+
)
|
| 230 |
+
|
| 231 |
+
def test_periphery_weight_fn(self):
|
| 232 |
+
for v in set(nx.periphery(self.G, weight=self.weight_fn)):
|
| 233 |
+
assert nx.eccentricity(self.G, v, weight=self.weight_fn) == nx.diameter(
|
| 234 |
+
self.G, weight=self.weight_fn
|
| 235 |
+
)
|
| 236 |
+
|
| 237 |
+
def test_center_weight_None(self):
|
| 238 |
+
for v in set(nx.center(self.G, weight=None)):
|
| 239 |
+
assert pytest.approx(nx.eccentricity(self.G, v, weight=None)) == nx.radius(
|
| 240 |
+
self.G, weight=None
|
| 241 |
+
)
|
| 242 |
+
|
| 243 |
+
def test_center_weight_attr(self):
|
| 244 |
+
center = set(nx.center(self.G, weight="weight"))
|
| 245 |
+
assert (
|
| 246 |
+
center
|
| 247 |
+
== set(nx.center(self.G, weight="cost"))
|
| 248 |
+
!= set(nx.center(self.G, weight="high_cost"))
|
| 249 |
+
)
|
| 250 |
+
for v in center:
|
| 251 |
+
assert (
|
| 252 |
+
nx.eccentricity(self.G, v, weight="high_cost")
|
| 253 |
+
!= pytest.approx(nx.eccentricity(self.G, v, weight="weight"))
|
| 254 |
+
== pytest.approx(nx.eccentricity(self.G, v, weight="cost"))
|
| 255 |
+
== nx.radius(self.G, weight="weight")
|
| 256 |
+
== nx.radius(self.G, weight="cost")
|
| 257 |
+
!= nx.radius(self.G, weight="high_cost")
|
| 258 |
+
)
|
| 259 |
+
assert nx.eccentricity(self.G, v, weight="high_cost") == nx.radius(
|
| 260 |
+
self.G, weight="high_cost"
|
| 261 |
+
)
|
| 262 |
+
|
| 263 |
+
def test_center_weight_fn(self):
|
| 264 |
+
for v in set(nx.center(self.G, weight=self.weight_fn)):
|
| 265 |
+
assert nx.eccentricity(self.G, v, weight=self.weight_fn) == nx.radius(
|
| 266 |
+
self.G, weight=self.weight_fn
|
| 267 |
+
)
|
| 268 |
+
|
| 269 |
+
def test_bound_diameter_weight_None(self):
|
| 270 |
+
assert nx.diameter(self.G, usebounds=True, weight=None) == 3
|
| 271 |
+
|
| 272 |
+
def test_bound_diameter_weight_attr(self):
|
| 273 |
+
assert (
|
| 274 |
+
nx.diameter(self.G, usebounds=True, weight="high_cost")
|
| 275 |
+
!= nx.diameter(self.G, usebounds=True, weight="weight")
|
| 276 |
+
== nx.diameter(self.G, usebounds=True, weight="cost")
|
| 277 |
+
== 1.6
|
| 278 |
+
!= nx.diameter(self.G, usebounds=True, weight="high_cost")
|
| 279 |
+
)
|
| 280 |
+
assert nx.diameter(self.G, usebounds=True, weight="high_cost") == nx.diameter(
|
| 281 |
+
self.G, usebounds=True, weight="high_cost"
|
| 282 |
+
)
|
| 283 |
+
|
| 284 |
+
def test_bound_diameter_weight_fn(self):
|
| 285 |
+
assert nx.diameter(self.G, usebounds=True, weight=self.weight_fn) == 6
|
| 286 |
+
|
| 287 |
+
def test_bound_radius_weight_None(self):
|
| 288 |
+
assert pytest.approx(nx.radius(self.G, usebounds=True, weight=None)) == 2
|
| 289 |
+
|
| 290 |
+
def test_bound_radius_weight_attr(self):
|
| 291 |
+
assert (
|
| 292 |
+
nx.radius(self.G, usebounds=True, weight="high_cost")
|
| 293 |
+
!= pytest.approx(nx.radius(self.G, usebounds=True, weight="weight"))
|
| 294 |
+
== pytest.approx(nx.radius(self.G, usebounds=True, weight="cost"))
|
| 295 |
+
== 0.9
|
| 296 |
+
!= nx.radius(self.G, usebounds=True, weight="high_cost")
|
| 297 |
+
)
|
| 298 |
+
assert nx.radius(self.G, usebounds=True, weight="high_cost") == nx.radius(
|
| 299 |
+
self.G, usebounds=True, weight="high_cost"
|
| 300 |
+
)
|
| 301 |
+
|
| 302 |
+
def test_bound_radius_weight_fn(self):
|
| 303 |
+
assert nx.radius(self.G, usebounds=True, weight=self.weight_fn) == 4
|
| 304 |
+
|
| 305 |
+
def test_bound_periphery_weight_None(self):
|
| 306 |
+
result = {1, 3, 4}
|
| 307 |
+
assert set(nx.periphery(self.G, usebounds=True, weight=None)) == result
|
| 308 |
+
|
| 309 |
+
def test_bound_periphery_weight_attr(self):
|
| 310 |
+
result = {4, 5}
|
| 311 |
+
assert (
|
| 312 |
+
set(nx.periphery(self.G, usebounds=True, weight="weight"))
|
| 313 |
+
== set(nx.periphery(self.G, usebounds=True, weight="cost"))
|
| 314 |
+
== result
|
| 315 |
+
)
|
| 316 |
+
|
| 317 |
+
def test_bound_periphery_weight_fn(self):
|
| 318 |
+
result = {1, 3, 4}
|
| 319 |
+
assert (
|
| 320 |
+
set(nx.periphery(self.G, usebounds=True, weight=self.weight_fn)) == result
|
| 321 |
+
)
|
| 322 |
+
|
| 323 |
+
def test_bound_center_weight_None(self):
|
| 324 |
+
result = {0, 2, 5}
|
| 325 |
+
assert set(nx.center(self.G, usebounds=True, weight=None)) == result
|
| 326 |
+
|
| 327 |
+
def test_bound_center_weight_attr(self):
|
| 328 |
+
result = {0}
|
| 329 |
+
assert (
|
| 330 |
+
set(nx.center(self.G, usebounds=True, weight="weight"))
|
| 331 |
+
== set(nx.center(self.G, usebounds=True, weight="cost"))
|
| 332 |
+
== result
|
| 333 |
+
)
|
| 334 |
+
|
| 335 |
+
def test_bound_center_weight_fn(self):
|
| 336 |
+
result = {0, 2, 5}
|
| 337 |
+
assert set(nx.center(self.G, usebounds=True, weight=self.weight_fn)) == result
|
| 338 |
+
|
| 339 |
+
|
| 340 |
+
class TestResistanceDistance:
|
| 341 |
+
@classmethod
|
| 342 |
+
def setup_class(cls):
|
| 343 |
+
global np
|
| 344 |
+
np = pytest.importorskip("numpy")
|
| 345 |
+
sp = pytest.importorskip("scipy")
|
| 346 |
+
|
| 347 |
+
def setup_method(self):
|
| 348 |
+
G = nx.Graph()
|
| 349 |
+
G.add_edge(1, 2, weight=2)
|
| 350 |
+
G.add_edge(2, 3, weight=4)
|
| 351 |
+
G.add_edge(3, 4, weight=1)
|
| 352 |
+
G.add_edge(1, 4, weight=3)
|
| 353 |
+
self.G = G
|
| 354 |
+
|
| 355 |
+
def test_resistance_distance_directed_graph(self):
|
| 356 |
+
G = nx.DiGraph()
|
| 357 |
+
with pytest.raises(nx.NetworkXNotImplemented):
|
| 358 |
+
nx.resistance_distance(G)
|
| 359 |
+
|
| 360 |
+
def test_resistance_distance_empty(self):
|
| 361 |
+
G = nx.Graph()
|
| 362 |
+
with pytest.raises(nx.NetworkXError):
|
| 363 |
+
nx.resistance_distance(G)
|
| 364 |
+
|
| 365 |
+
def test_resistance_distance_not_connected(self):
|
| 366 |
+
with pytest.raises(nx.NetworkXError):
|
| 367 |
+
self.G.add_node(5)
|
| 368 |
+
nx.resistance_distance(self.G, 1, 5)
|
| 369 |
+
|
| 370 |
+
def test_resistance_distance_nodeA_not_in_graph(self):
|
| 371 |
+
with pytest.raises(nx.NetworkXError):
|
| 372 |
+
nx.resistance_distance(self.G, 9, 1)
|
| 373 |
+
|
| 374 |
+
def test_resistance_distance_nodeB_not_in_graph(self):
|
| 375 |
+
with pytest.raises(nx.NetworkXError):
|
| 376 |
+
nx.resistance_distance(self.G, 1, 9)
|
| 377 |
+
|
| 378 |
+
def test_resistance_distance(self):
|
| 379 |
+
rd = nx.resistance_distance(self.G, 1, 3, "weight", True)
|
| 380 |
+
test_data = 1 / (1 / (2 + 4) + 1 / (1 + 3))
|
| 381 |
+
assert round(rd, 5) == round(test_data, 5)
|
| 382 |
+
|
| 383 |
+
def test_resistance_distance_noinv(self):
|
| 384 |
+
rd = nx.resistance_distance(self.G, 1, 3, "weight", False)
|
| 385 |
+
test_data = 1 / (1 / (1 / 2 + 1 / 4) + 1 / (1 / 1 + 1 / 3))
|
| 386 |
+
assert round(rd, 5) == round(test_data, 5)
|
| 387 |
+
|
| 388 |
+
def test_resistance_distance_no_weight(self):
|
| 389 |
+
rd = nx.resistance_distance(self.G, 1, 3)
|
| 390 |
+
assert round(rd, 5) == 1
|
| 391 |
+
|
| 392 |
+
def test_resistance_distance_neg_weight(self):
|
| 393 |
+
self.G[2][3]["weight"] = -4
|
| 394 |
+
rd = nx.resistance_distance(self.G, 1, 3, "weight", True)
|
| 395 |
+
test_data = 1 / (1 / (2 + -4) + 1 / (1 + 3))
|
| 396 |
+
assert round(rd, 5) == round(test_data, 5)
|
| 397 |
+
|
| 398 |
+
def test_multigraph(self):
|
| 399 |
+
G = nx.MultiGraph()
|
| 400 |
+
G.add_edge(1, 2, weight=2)
|
| 401 |
+
G.add_edge(2, 3, weight=4)
|
| 402 |
+
G.add_edge(3, 4, weight=1)
|
| 403 |
+
G.add_edge(1, 4, weight=3)
|
| 404 |
+
rd = nx.resistance_distance(G, 1, 3, "weight", True)
|
| 405 |
+
assert np.isclose(rd, 1 / (1 / (2 + 4) + 1 / (1 + 3)))
|
| 406 |
+
|
| 407 |
+
def test_resistance_distance_div0(self):
|
| 408 |
+
with pytest.raises(ZeroDivisionError):
|
| 409 |
+
self.G[1][2]["weight"] = 0
|
| 410 |
+
nx.resistance_distance(self.G, 1, 3, "weight")
|
| 411 |
+
|
| 412 |
+
def test_resistance_distance_same_node(self):
|
| 413 |
+
assert nx.resistance_distance(self.G, 1, 1) == 0
|
| 414 |
+
|
| 415 |
+
def test_resistance_distance_only_nodeA(self):
|
| 416 |
+
rd = nx.resistance_distance(self.G, nodeA=1)
|
| 417 |
+
test_data = {}
|
| 418 |
+
test_data[1] = 0
|
| 419 |
+
test_data[2] = 0.75
|
| 420 |
+
test_data[3] = 1
|
| 421 |
+
test_data[4] = 0.75
|
| 422 |
+
assert type(rd) == dict
|
| 423 |
+
assert sorted(rd.keys()) == sorted(test_data.keys())
|
| 424 |
+
for key in rd:
|
| 425 |
+
assert np.isclose(rd[key], test_data[key])
|
| 426 |
+
|
| 427 |
+
def test_resistance_distance_only_nodeB(self):
|
| 428 |
+
rd = nx.resistance_distance(self.G, nodeB=1)
|
| 429 |
+
test_data = {}
|
| 430 |
+
test_data[1] = 0
|
| 431 |
+
test_data[2] = 0.75
|
| 432 |
+
test_data[3] = 1
|
| 433 |
+
test_data[4] = 0.75
|
| 434 |
+
assert type(rd) == dict
|
| 435 |
+
assert sorted(rd.keys()) == sorted(test_data.keys())
|
| 436 |
+
for key in rd:
|
| 437 |
+
assert np.isclose(rd[key], test_data[key])
|
| 438 |
+
|
| 439 |
+
def test_resistance_distance_all(self):
|
| 440 |
+
rd = nx.resistance_distance(self.G)
|
| 441 |
+
assert type(rd) == dict
|
| 442 |
+
assert round(rd[1][3], 5) == 1
|
| 443 |
+
|
| 444 |
+
|
| 445 |
+
class TestEffectiveGraphResistance:
|
| 446 |
+
@classmethod
|
| 447 |
+
def setup_class(cls):
|
| 448 |
+
global np
|
| 449 |
+
np = pytest.importorskip("numpy")
|
| 450 |
+
sp = pytest.importorskip("scipy")
|
| 451 |
+
|
| 452 |
+
def setup_method(self):
|
| 453 |
+
G = nx.Graph()
|
| 454 |
+
G.add_edge(1, 2, weight=2)
|
| 455 |
+
G.add_edge(1, 3, weight=1)
|
| 456 |
+
G.add_edge(2, 3, weight=4)
|
| 457 |
+
self.G = G
|
| 458 |
+
|
| 459 |
+
def test_effective_graph_resistance_directed_graph(self):
|
| 460 |
+
G = nx.DiGraph()
|
| 461 |
+
with pytest.raises(nx.NetworkXNotImplemented):
|
| 462 |
+
nx.effective_graph_resistance(G)
|
| 463 |
+
|
| 464 |
+
def test_effective_graph_resistance_empty(self):
|
| 465 |
+
G = nx.Graph()
|
| 466 |
+
with pytest.raises(nx.NetworkXError):
|
| 467 |
+
nx.effective_graph_resistance(G)
|
| 468 |
+
|
| 469 |
+
def test_effective_graph_resistance_not_connected(self):
|
| 470 |
+
G = nx.Graph([(1, 2), (3, 4)])
|
| 471 |
+
RG = nx.effective_graph_resistance(G)
|
| 472 |
+
assert np.isinf(RG)
|
| 473 |
+
|
| 474 |
+
def test_effective_graph_resistance(self):
|
| 475 |
+
RG = nx.effective_graph_resistance(self.G, "weight", True)
|
| 476 |
+
rd12 = 1 / (1 / (1 + 4) + 1 / 2)
|
| 477 |
+
rd13 = 1 / (1 / (1 + 2) + 1 / 4)
|
| 478 |
+
rd23 = 1 / (1 / (2 + 4) + 1 / 1)
|
| 479 |
+
assert np.isclose(RG, rd12 + rd13 + rd23)
|
| 480 |
+
|
| 481 |
+
def test_effective_graph_resistance_noinv(self):
|
| 482 |
+
RG = nx.effective_graph_resistance(self.G, "weight", False)
|
| 483 |
+
rd12 = 1 / (1 / (1 / 1 + 1 / 4) + 1 / (1 / 2))
|
| 484 |
+
rd13 = 1 / (1 / (1 / 1 + 1 / 2) + 1 / (1 / 4))
|
| 485 |
+
rd23 = 1 / (1 / (1 / 2 + 1 / 4) + 1 / (1 / 1))
|
| 486 |
+
assert np.isclose(RG, rd12 + rd13 + rd23)
|
| 487 |
+
|
| 488 |
+
def test_effective_graph_resistance_no_weight(self):
|
| 489 |
+
RG = nx.effective_graph_resistance(self.G)
|
| 490 |
+
assert np.isclose(RG, 2)
|
| 491 |
+
|
| 492 |
+
def test_effective_graph_resistance_neg_weight(self):
|
| 493 |
+
self.G[2][3]["weight"] = -4
|
| 494 |
+
RG = nx.effective_graph_resistance(self.G, "weight", True)
|
| 495 |
+
rd12 = 1 / (1 / (1 + -4) + 1 / 2)
|
| 496 |
+
rd13 = 1 / (1 / (1 + 2) + 1 / (-4))
|
| 497 |
+
rd23 = 1 / (1 / (2 + -4) + 1 / 1)
|
| 498 |
+
assert np.isclose(RG, rd12 + rd13 + rd23)
|
| 499 |
+
|
| 500 |
+
def test_effective_graph_resistance_multigraph(self):
|
| 501 |
+
G = nx.MultiGraph()
|
| 502 |
+
G.add_edge(1, 2, weight=2)
|
| 503 |
+
G.add_edge(1, 3, weight=1)
|
| 504 |
+
G.add_edge(2, 3, weight=1)
|
| 505 |
+
G.add_edge(2, 3, weight=3)
|
| 506 |
+
RG = nx.effective_graph_resistance(G, "weight", True)
|
| 507 |
+
edge23 = 1 / (1 / 1 + 1 / 3)
|
| 508 |
+
rd12 = 1 / (1 / (1 + edge23) + 1 / 2)
|
| 509 |
+
rd13 = 1 / (1 / (1 + 2) + 1 / edge23)
|
| 510 |
+
rd23 = 1 / (1 / (2 + edge23) + 1 / 1)
|
| 511 |
+
assert np.isclose(RG, rd12 + rd13 + rd23)
|
| 512 |
+
|
| 513 |
+
def test_effective_graph_resistance_div0(self):
|
| 514 |
+
with pytest.raises(ZeroDivisionError):
|
| 515 |
+
self.G[1][2]["weight"] = 0
|
| 516 |
+
nx.effective_graph_resistance(self.G, "weight")
|
| 517 |
+
|
| 518 |
+
def test_effective_graph_resistance_complete_graph(self):
|
| 519 |
+
N = 10
|
| 520 |
+
G = nx.complete_graph(N)
|
| 521 |
+
RG = nx.effective_graph_resistance(G)
|
| 522 |
+
assert np.isclose(RG, N - 1)
|
| 523 |
+
|
| 524 |
+
def test_effective_graph_resistance_path_graph(self):
|
| 525 |
+
N = 10
|
| 526 |
+
G = nx.path_graph(N)
|
| 527 |
+
RG = nx.effective_graph_resistance(G)
|
| 528 |
+
assert np.isclose(RG, (N - 1) * N * (N + 1) // 6)
|
| 529 |
+
|
| 530 |
+
|
| 531 |
+
class TestBarycenter:
|
| 532 |
+
"""Test :func:`networkx.algorithms.distance_measures.barycenter`."""
|
| 533 |
+
|
| 534 |
+
def barycenter_as_subgraph(self, g, **kwargs):
|
| 535 |
+
"""Return the subgraph induced on the barycenter of g"""
|
| 536 |
+
b = nx.barycenter(g, **kwargs)
|
| 537 |
+
assert isinstance(b, list)
|
| 538 |
+
assert set(b) <= set(g)
|
| 539 |
+
return g.subgraph(b)
|
| 540 |
+
|
| 541 |
+
def test_must_be_connected(self):
|
| 542 |
+
pytest.raises(nx.NetworkXNoPath, nx.barycenter, nx.empty_graph(5))
|
| 543 |
+
|
| 544 |
+
def test_sp_kwarg(self):
|
| 545 |
+
# Complete graph K_5. Normally it works...
|
| 546 |
+
K_5 = nx.complete_graph(5)
|
| 547 |
+
sp = dict(nx.shortest_path_length(K_5))
|
| 548 |
+
assert nx.barycenter(K_5, sp=sp) == list(K_5)
|
| 549 |
+
|
| 550 |
+
# ...but not with the weight argument
|
| 551 |
+
for u, v, data in K_5.edges.data():
|
| 552 |
+
data["weight"] = 1
|
| 553 |
+
pytest.raises(ValueError, nx.barycenter, K_5, sp=sp, weight="weight")
|
| 554 |
+
|
| 555 |
+
# ...and a corrupted sp can make it seem like K_5 is disconnected
|
| 556 |
+
del sp[0][1]
|
| 557 |
+
pytest.raises(nx.NetworkXNoPath, nx.barycenter, K_5, sp=sp)
|
| 558 |
+
|
| 559 |
+
def test_trees(self):
|
| 560 |
+
"""The barycenter of a tree is a single vertex or an edge.
|
| 561 |
+
|
| 562 |
+
See [West01]_, p. 78.
|
| 563 |
+
"""
|
| 564 |
+
prng = Random(0xDEADBEEF)
|
| 565 |
+
for i in range(50):
|
| 566 |
+
RT = nx.random_labeled_tree(prng.randint(1, 75), seed=prng)
|
| 567 |
+
b = self.barycenter_as_subgraph(RT)
|
| 568 |
+
if len(b) == 2:
|
| 569 |
+
assert b.size() == 1
|
| 570 |
+
else:
|
| 571 |
+
assert len(b) == 1
|
| 572 |
+
assert b.size() == 0
|
| 573 |
+
|
| 574 |
+
def test_this_one_specific_tree(self):
|
| 575 |
+
"""Test the tree pictured at the bottom of [West01]_, p. 78."""
|
| 576 |
+
g = nx.Graph(
|
| 577 |
+
{
|
| 578 |
+
"a": ["b"],
|
| 579 |
+
"b": ["a", "x"],
|
| 580 |
+
"x": ["b", "y"],
|
| 581 |
+
"y": ["x", "z"],
|
| 582 |
+
"z": ["y", 0, 1, 2, 3, 4],
|
| 583 |
+
0: ["z"],
|
| 584 |
+
1: ["z"],
|
| 585 |
+
2: ["z"],
|
| 586 |
+
3: ["z"],
|
| 587 |
+
4: ["z"],
|
| 588 |
+
}
|
| 589 |
+
)
|
| 590 |
+
b = self.barycenter_as_subgraph(g, attr="barycentricity")
|
| 591 |
+
assert list(b) == ["z"]
|
| 592 |
+
assert not b.edges
|
| 593 |
+
expected_barycentricity = {
|
| 594 |
+
0: 23,
|
| 595 |
+
1: 23,
|
| 596 |
+
2: 23,
|
| 597 |
+
3: 23,
|
| 598 |
+
4: 23,
|
| 599 |
+
"a": 35,
|
| 600 |
+
"b": 27,
|
| 601 |
+
"x": 21,
|
| 602 |
+
"y": 17,
|
| 603 |
+
"z": 15,
|
| 604 |
+
}
|
| 605 |
+
for node, barycentricity in expected_barycentricity.items():
|
| 606 |
+
assert g.nodes[node]["barycentricity"] == barycentricity
|
| 607 |
+
|
| 608 |
+
# Doubling weights should do nothing but double the barycentricities
|
| 609 |
+
for edge in g.edges:
|
| 610 |
+
g.edges[edge]["weight"] = 2
|
| 611 |
+
b = self.barycenter_as_subgraph(g, weight="weight", attr="barycentricity2")
|
| 612 |
+
assert list(b) == ["z"]
|
| 613 |
+
assert not b.edges
|
| 614 |
+
for node, barycentricity in expected_barycentricity.items():
|
| 615 |
+
assert g.nodes[node]["barycentricity2"] == barycentricity * 2
|
| 616 |
+
|
| 617 |
+
|
| 618 |
+
class TestKemenyConstant:
|
| 619 |
+
@classmethod
|
| 620 |
+
def setup_class(cls):
|
| 621 |
+
global np
|
| 622 |
+
np = pytest.importorskip("numpy")
|
| 623 |
+
sp = pytest.importorskip("scipy")
|
| 624 |
+
|
| 625 |
+
def setup_method(self):
|
| 626 |
+
G = nx.Graph()
|
| 627 |
+
w12 = 2
|
| 628 |
+
w13 = 3
|
| 629 |
+
w23 = 4
|
| 630 |
+
G.add_edge(1, 2, weight=w12)
|
| 631 |
+
G.add_edge(1, 3, weight=w13)
|
| 632 |
+
G.add_edge(2, 3, weight=w23)
|
| 633 |
+
self.G = G
|
| 634 |
+
|
| 635 |
+
def test_kemeny_constant_directed(self):
|
| 636 |
+
G = nx.DiGraph()
|
| 637 |
+
G.add_edge(1, 2)
|
| 638 |
+
G.add_edge(1, 3)
|
| 639 |
+
G.add_edge(2, 3)
|
| 640 |
+
with pytest.raises(nx.NetworkXNotImplemented):
|
| 641 |
+
nx.kemeny_constant(G)
|
| 642 |
+
|
| 643 |
+
def test_kemeny_constant_not_connected(self):
|
| 644 |
+
self.G.add_node(5)
|
| 645 |
+
with pytest.raises(nx.NetworkXError):
|
| 646 |
+
nx.kemeny_constant(self.G)
|
| 647 |
+
|
| 648 |
+
def test_kemeny_constant_no_nodes(self):
|
| 649 |
+
G = nx.Graph()
|
| 650 |
+
with pytest.raises(nx.NetworkXError):
|
| 651 |
+
nx.kemeny_constant(G)
|
| 652 |
+
|
| 653 |
+
def test_kemeny_constant_negative_weight(self):
|
| 654 |
+
G = nx.Graph()
|
| 655 |
+
w12 = 2
|
| 656 |
+
w13 = 3
|
| 657 |
+
w23 = -10
|
| 658 |
+
G.add_edge(1, 2, weight=w12)
|
| 659 |
+
G.add_edge(1, 3, weight=w13)
|
| 660 |
+
G.add_edge(2, 3, weight=w23)
|
| 661 |
+
with pytest.raises(nx.NetworkXError):
|
| 662 |
+
nx.kemeny_constant(G, weight="weight")
|
| 663 |
+
|
| 664 |
+
def test_kemeny_constant(self):
|
| 665 |
+
K = nx.kemeny_constant(self.G, weight="weight")
|
| 666 |
+
w12 = 2
|
| 667 |
+
w13 = 3
|
| 668 |
+
w23 = 4
|
| 669 |
+
test_data = (
|
| 670 |
+
3
|
| 671 |
+
/ 2
|
| 672 |
+
* (w12 + w13)
|
| 673 |
+
* (w12 + w23)
|
| 674 |
+
* (w13 + w23)
|
| 675 |
+
/ (
|
| 676 |
+
w12**2 * (w13 + w23)
|
| 677 |
+
+ w13**2 * (w12 + w23)
|
| 678 |
+
+ w23**2 * (w12 + w13)
|
| 679 |
+
+ 3 * w12 * w13 * w23
|
| 680 |
+
)
|
| 681 |
+
)
|
| 682 |
+
assert np.isclose(K, test_data)
|
| 683 |
+
|
| 684 |
+
def test_kemeny_constant_no_weight(self):
|
| 685 |
+
K = nx.kemeny_constant(self.G)
|
| 686 |
+
assert np.isclose(K, 4 / 3)
|
| 687 |
+
|
| 688 |
+
def test_kemeny_constant_multigraph(self):
|
| 689 |
+
G = nx.MultiGraph()
|
| 690 |
+
w12_1 = 2
|
| 691 |
+
w12_2 = 1
|
| 692 |
+
w13 = 3
|
| 693 |
+
w23 = 4
|
| 694 |
+
G.add_edge(1, 2, weight=w12_1)
|
| 695 |
+
G.add_edge(1, 2, weight=w12_2)
|
| 696 |
+
G.add_edge(1, 3, weight=w13)
|
| 697 |
+
G.add_edge(2, 3, weight=w23)
|
| 698 |
+
K = nx.kemeny_constant(G, weight="weight")
|
| 699 |
+
w12 = w12_1 + w12_2
|
| 700 |
+
test_data = (
|
| 701 |
+
3
|
| 702 |
+
/ 2
|
| 703 |
+
* (w12 + w13)
|
| 704 |
+
* (w12 + w23)
|
| 705 |
+
* (w13 + w23)
|
| 706 |
+
/ (
|
| 707 |
+
w12**2 * (w13 + w23)
|
| 708 |
+
+ w13**2 * (w12 + w23)
|
| 709 |
+
+ w23**2 * (w12 + w13)
|
| 710 |
+
+ 3 * w12 * w13 * w23
|
| 711 |
+
)
|
| 712 |
+
)
|
| 713 |
+
assert np.isclose(K, test_data)
|
| 714 |
+
|
| 715 |
+
def test_kemeny_constant_weight0(self):
|
| 716 |
+
G = nx.Graph()
|
| 717 |
+
w12 = 0
|
| 718 |
+
w13 = 3
|
| 719 |
+
w23 = 4
|
| 720 |
+
G.add_edge(1, 2, weight=w12)
|
| 721 |
+
G.add_edge(1, 3, weight=w13)
|
| 722 |
+
G.add_edge(2, 3, weight=w23)
|
| 723 |
+
K = nx.kemeny_constant(G, weight="weight")
|
| 724 |
+
test_data = (
|
| 725 |
+
3
|
| 726 |
+
/ 2
|
| 727 |
+
* (w12 + w13)
|
| 728 |
+
* (w12 + w23)
|
| 729 |
+
* (w13 + w23)
|
| 730 |
+
/ (
|
| 731 |
+
w12**2 * (w13 + w23)
|
| 732 |
+
+ w13**2 * (w12 + w23)
|
| 733 |
+
+ w23**2 * (w12 + w13)
|
| 734 |
+
+ 3 * w12 * w13 * w23
|
| 735 |
+
)
|
| 736 |
+
)
|
| 737 |
+
assert np.isclose(K, test_data)
|
| 738 |
+
|
| 739 |
+
def test_kemeny_constant_selfloop(self):
|
| 740 |
+
G = nx.Graph()
|
| 741 |
+
w11 = 1
|
| 742 |
+
w12 = 2
|
| 743 |
+
w13 = 3
|
| 744 |
+
w23 = 4
|
| 745 |
+
G.add_edge(1, 1, weight=w11)
|
| 746 |
+
G.add_edge(1, 2, weight=w12)
|
| 747 |
+
G.add_edge(1, 3, weight=w13)
|
| 748 |
+
G.add_edge(2, 3, weight=w23)
|
| 749 |
+
K = nx.kemeny_constant(G, weight="weight")
|
| 750 |
+
test_data = (
|
| 751 |
+
(2 * w11 + 3 * w12 + 3 * w13)
|
| 752 |
+
* (w12 + w23)
|
| 753 |
+
* (w13 + w23)
|
| 754 |
+
/ (
|
| 755 |
+
(w12 * w13 + w12 * w23 + w13 * w23)
|
| 756 |
+
* (w11 + 2 * w12 + 2 * w13 + 2 * w23)
|
| 757 |
+
)
|
| 758 |
+
)
|
| 759 |
+
assert np.isclose(K, test_data)
|
| 760 |
+
|
| 761 |
+
def test_kemeny_constant_complete_bipartite_graph(self):
|
| 762 |
+
# Theorem 1 in https://www.sciencedirect.com/science/article/pii/S0166218X20302912
|
| 763 |
+
n1 = 5
|
| 764 |
+
n2 = 4
|
| 765 |
+
G = nx.complete_bipartite_graph(n1, n2)
|
| 766 |
+
K = nx.kemeny_constant(G)
|
| 767 |
+
assert np.isclose(K, n1 + n2 - 3 / 2)
|
| 768 |
+
|
| 769 |
+
def test_kemeny_constant_path_graph(self):
|
| 770 |
+
# Theorem 2 in https://www.sciencedirect.com/science/article/pii/S0166218X20302912
|
| 771 |
+
n = 10
|
| 772 |
+
G = nx.path_graph(n)
|
| 773 |
+
K = nx.kemeny_constant(G)
|
| 774 |
+
assert np.isclose(K, n**2 / 3 - 2 * n / 3 + 1 / 2)
|
code/LaDi-RL-old-qwen-cod/LaDi-RL-old-qwen-cod/venv/lib64/python3.10/site-packages/networkx/algorithms/tests/test_distance_regular.py
ADDED
|
@@ -0,0 +1,85 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
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|
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|
|
|
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|
|
|
|
|
|
|
|
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|
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|
|
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|
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|
|
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|
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|
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|
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|
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|
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|
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|
|
|
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|
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|
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|
|
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|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
import pytest
|
| 2 |
+
|
| 3 |
+
import networkx as nx
|
| 4 |
+
from networkx import is_strongly_regular
|
| 5 |
+
|
| 6 |
+
|
| 7 |
+
@pytest.mark.parametrize(
|
| 8 |
+
"f", (nx.is_distance_regular, nx.intersection_array, nx.is_strongly_regular)
|
| 9 |
+
)
|
| 10 |
+
@pytest.mark.parametrize("graph_constructor", (nx.DiGraph, nx.MultiGraph))
|
| 11 |
+
def test_raises_on_directed_and_multigraphs(f, graph_constructor):
|
| 12 |
+
G = graph_constructor([(0, 1), (1, 2)])
|
| 13 |
+
with pytest.raises(nx.NetworkXNotImplemented):
|
| 14 |
+
f(G)
|
| 15 |
+
|
| 16 |
+
|
| 17 |
+
class TestDistanceRegular:
|
| 18 |
+
def test_is_distance_regular(self):
|
| 19 |
+
assert nx.is_distance_regular(nx.icosahedral_graph())
|
| 20 |
+
assert nx.is_distance_regular(nx.petersen_graph())
|
| 21 |
+
assert nx.is_distance_regular(nx.cubical_graph())
|
| 22 |
+
assert nx.is_distance_regular(nx.complete_bipartite_graph(3, 3))
|
| 23 |
+
assert nx.is_distance_regular(nx.tetrahedral_graph())
|
| 24 |
+
assert nx.is_distance_regular(nx.dodecahedral_graph())
|
| 25 |
+
assert nx.is_distance_regular(nx.pappus_graph())
|
| 26 |
+
assert nx.is_distance_regular(nx.heawood_graph())
|
| 27 |
+
assert nx.is_distance_regular(nx.cycle_graph(3))
|
| 28 |
+
# no distance regular
|
| 29 |
+
assert not nx.is_distance_regular(nx.path_graph(4))
|
| 30 |
+
|
| 31 |
+
def test_not_connected(self):
|
| 32 |
+
G = nx.cycle_graph(4)
|
| 33 |
+
nx.add_cycle(G, [5, 6, 7])
|
| 34 |
+
assert not nx.is_distance_regular(G)
|
| 35 |
+
|
| 36 |
+
def test_global_parameters(self):
|
| 37 |
+
b, c = nx.intersection_array(nx.cycle_graph(5))
|
| 38 |
+
g = nx.global_parameters(b, c)
|
| 39 |
+
assert list(g) == [(0, 0, 2), (1, 0, 1), (1, 1, 0)]
|
| 40 |
+
b, c = nx.intersection_array(nx.cycle_graph(3))
|
| 41 |
+
g = nx.global_parameters(b, c)
|
| 42 |
+
assert list(g) == [(0, 0, 2), (1, 1, 0)]
|
| 43 |
+
|
| 44 |
+
def test_intersection_array(self):
|
| 45 |
+
b, c = nx.intersection_array(nx.cycle_graph(5))
|
| 46 |
+
assert b == [2, 1]
|
| 47 |
+
assert c == [1, 1]
|
| 48 |
+
b, c = nx.intersection_array(nx.dodecahedral_graph())
|
| 49 |
+
assert b == [3, 2, 1, 1, 1]
|
| 50 |
+
assert c == [1, 1, 1, 2, 3]
|
| 51 |
+
b, c = nx.intersection_array(nx.icosahedral_graph())
|
| 52 |
+
assert b == [5, 2, 1]
|
| 53 |
+
assert c == [1, 2, 5]
|
| 54 |
+
|
| 55 |
+
|
| 56 |
+
@pytest.mark.parametrize("f", (nx.is_distance_regular, nx.is_strongly_regular))
|
| 57 |
+
def test_empty_graph_raises(f):
|
| 58 |
+
G = nx.Graph()
|
| 59 |
+
with pytest.raises(nx.NetworkXPointlessConcept, match="Graph has no nodes"):
|
| 60 |
+
f(G)
|
| 61 |
+
|
| 62 |
+
|
| 63 |
+
class TestStronglyRegular:
|
| 64 |
+
"""Unit tests for the :func:`~networkx.is_strongly_regular`
|
| 65 |
+
function.
|
| 66 |
+
|
| 67 |
+
"""
|
| 68 |
+
|
| 69 |
+
def test_cycle_graph(self):
|
| 70 |
+
"""Tests that the cycle graph on five vertices is strongly
|
| 71 |
+
regular.
|
| 72 |
+
|
| 73 |
+
"""
|
| 74 |
+
G = nx.cycle_graph(5)
|
| 75 |
+
assert is_strongly_regular(G)
|
| 76 |
+
|
| 77 |
+
def test_petersen_graph(self):
|
| 78 |
+
"""Tests that the Petersen graph is strongly regular."""
|
| 79 |
+
G = nx.petersen_graph()
|
| 80 |
+
assert is_strongly_regular(G)
|
| 81 |
+
|
| 82 |
+
def test_path_graph(self):
|
| 83 |
+
"""Tests that the path graph is not strongly regular."""
|
| 84 |
+
G = nx.path_graph(4)
|
| 85 |
+
assert not is_strongly_regular(G)
|
code/LaDi-RL-old-qwen-cod/LaDi-RL-old-qwen-cod/venv/lib64/python3.10/site-packages/networkx/algorithms/tests/test_dominance.py
ADDED
|
@@ -0,0 +1,286 @@
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|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
| 1 |
+
import pytest
|
| 2 |
+
|
| 3 |
+
import networkx as nx
|
| 4 |
+
|
| 5 |
+
|
| 6 |
+
class TestImmediateDominators:
|
| 7 |
+
def test_exceptions(self):
|
| 8 |
+
G = nx.Graph()
|
| 9 |
+
G.add_node(0)
|
| 10 |
+
pytest.raises(nx.NetworkXNotImplemented, nx.immediate_dominators, G, 0)
|
| 11 |
+
G = nx.MultiGraph(G)
|
| 12 |
+
pytest.raises(nx.NetworkXNotImplemented, nx.immediate_dominators, G, 0)
|
| 13 |
+
G = nx.DiGraph([[0, 0]])
|
| 14 |
+
pytest.raises(nx.NetworkXError, nx.immediate_dominators, G, 1)
|
| 15 |
+
|
| 16 |
+
def test_singleton(self):
|
| 17 |
+
G = nx.DiGraph()
|
| 18 |
+
G.add_node(0)
|
| 19 |
+
assert nx.immediate_dominators(G, 0) == {0: 0}
|
| 20 |
+
G.add_edge(0, 0)
|
| 21 |
+
assert nx.immediate_dominators(G, 0) == {0: 0}
|
| 22 |
+
|
| 23 |
+
def test_path(self):
|
| 24 |
+
n = 5
|
| 25 |
+
G = nx.path_graph(n, create_using=nx.DiGraph())
|
| 26 |
+
assert nx.immediate_dominators(G, 0) == {i: max(i - 1, 0) for i in range(n)}
|
| 27 |
+
|
| 28 |
+
def test_cycle(self):
|
| 29 |
+
n = 5
|
| 30 |
+
G = nx.cycle_graph(n, create_using=nx.DiGraph())
|
| 31 |
+
assert nx.immediate_dominators(G, 0) == {i: max(i - 1, 0) for i in range(n)}
|
| 32 |
+
|
| 33 |
+
def test_unreachable(self):
|
| 34 |
+
n = 5
|
| 35 |
+
assert n > 1
|
| 36 |
+
G = nx.path_graph(n, create_using=nx.DiGraph())
|
| 37 |
+
assert nx.immediate_dominators(G, n // 2) == {
|
| 38 |
+
i: max(i - 1, n // 2) for i in range(n // 2, n)
|
| 39 |
+
}
|
| 40 |
+
|
| 41 |
+
def test_irreducible1(self):
|
| 42 |
+
"""
|
| 43 |
+
Graph taken from figure 2 of "A simple, fast dominance algorithm." (2006).
|
| 44 |
+
https://hdl.handle.net/1911/96345
|
| 45 |
+
"""
|
| 46 |
+
edges = [(1, 2), (2, 1), (3, 2), (4, 1), (5, 3), (5, 4)]
|
| 47 |
+
G = nx.DiGraph(edges)
|
| 48 |
+
assert nx.immediate_dominators(G, 5) == {i: 5 for i in range(1, 6)}
|
| 49 |
+
|
| 50 |
+
def test_irreducible2(self):
|
| 51 |
+
"""
|
| 52 |
+
Graph taken from figure 4 of "A simple, fast dominance algorithm." (2006).
|
| 53 |
+
https://hdl.handle.net/1911/96345
|
| 54 |
+
"""
|
| 55 |
+
|
| 56 |
+
edges = [(1, 2), (2, 1), (2, 3), (3, 2), (4, 2), (4, 3), (5, 1), (6, 4), (6, 5)]
|
| 57 |
+
G = nx.DiGraph(edges)
|
| 58 |
+
result = nx.immediate_dominators(G, 6)
|
| 59 |
+
assert result == {i: 6 for i in range(1, 7)}
|
| 60 |
+
|
| 61 |
+
def test_domrel_png(self):
|
| 62 |
+
# Graph taken from https://commons.wikipedia.org/wiki/File:Domrel.png
|
| 63 |
+
edges = [(1, 2), (2, 3), (2, 4), (2, 6), (3, 5), (4, 5), (5, 2)]
|
| 64 |
+
G = nx.DiGraph(edges)
|
| 65 |
+
result = nx.immediate_dominators(G, 1)
|
| 66 |
+
assert result == {1: 1, 2: 1, 3: 2, 4: 2, 5: 2, 6: 2}
|
| 67 |
+
# Test postdominance.
|
| 68 |
+
result = nx.immediate_dominators(G.reverse(copy=False), 6)
|
| 69 |
+
assert result == {1: 2, 2: 6, 3: 5, 4: 5, 5: 2, 6: 6}
|
| 70 |
+
|
| 71 |
+
def test_boost_example(self):
|
| 72 |
+
# Graph taken from Figure 1 of
|
| 73 |
+
# http://www.boost.org/doc/libs/1_56_0/libs/graph/doc/lengauer_tarjan_dominator.htm
|
| 74 |
+
edges = [(0, 1), (1, 2), (1, 3), (2, 7), (3, 4), (4, 5), (4, 6), (5, 7), (6, 4)]
|
| 75 |
+
G = nx.DiGraph(edges)
|
| 76 |
+
result = nx.immediate_dominators(G, 0)
|
| 77 |
+
assert result == {0: 0, 1: 0, 2: 1, 3: 1, 4: 3, 5: 4, 6: 4, 7: 1}
|
| 78 |
+
# Test postdominance.
|
| 79 |
+
result = nx.immediate_dominators(G.reverse(copy=False), 7)
|
| 80 |
+
assert result == {0: 1, 1: 7, 2: 7, 3: 4, 4: 5, 5: 7, 6: 4, 7: 7}
|
| 81 |
+
|
| 82 |
+
|
| 83 |
+
class TestDominanceFrontiers:
|
| 84 |
+
def test_exceptions(self):
|
| 85 |
+
G = nx.Graph()
|
| 86 |
+
G.add_node(0)
|
| 87 |
+
pytest.raises(nx.NetworkXNotImplemented, nx.dominance_frontiers, G, 0)
|
| 88 |
+
G = nx.MultiGraph(G)
|
| 89 |
+
pytest.raises(nx.NetworkXNotImplemented, nx.dominance_frontiers, G, 0)
|
| 90 |
+
G = nx.DiGraph([[0, 0]])
|
| 91 |
+
pytest.raises(nx.NetworkXError, nx.dominance_frontiers, G, 1)
|
| 92 |
+
|
| 93 |
+
def test_singleton(self):
|
| 94 |
+
G = nx.DiGraph()
|
| 95 |
+
G.add_node(0)
|
| 96 |
+
assert nx.dominance_frontiers(G, 0) == {0: set()}
|
| 97 |
+
G.add_edge(0, 0)
|
| 98 |
+
assert nx.dominance_frontiers(G, 0) == {0: set()}
|
| 99 |
+
|
| 100 |
+
def test_path(self):
|
| 101 |
+
n = 5
|
| 102 |
+
G = nx.path_graph(n, create_using=nx.DiGraph())
|
| 103 |
+
assert nx.dominance_frontiers(G, 0) == {i: set() for i in range(n)}
|
| 104 |
+
|
| 105 |
+
def test_cycle(self):
|
| 106 |
+
n = 5
|
| 107 |
+
G = nx.cycle_graph(n, create_using=nx.DiGraph())
|
| 108 |
+
assert nx.dominance_frontiers(G, 0) == {i: set() for i in range(n)}
|
| 109 |
+
|
| 110 |
+
def test_unreachable(self):
|
| 111 |
+
n = 5
|
| 112 |
+
assert n > 1
|
| 113 |
+
G = nx.path_graph(n, create_using=nx.DiGraph())
|
| 114 |
+
assert nx.dominance_frontiers(G, n // 2) == {i: set() for i in range(n // 2, n)}
|
| 115 |
+
|
| 116 |
+
def test_irreducible1(self):
|
| 117 |
+
"""
|
| 118 |
+
Graph taken from figure 2 of "A simple, fast dominance algorithm." (2006).
|
| 119 |
+
https://hdl.handle.net/1911/96345
|
| 120 |
+
"""
|
| 121 |
+
edges = [(1, 2), (2, 1), (3, 2), (4, 1), (5, 3), (5, 4)]
|
| 122 |
+
G = nx.DiGraph(edges)
|
| 123 |
+
assert dict(nx.dominance_frontiers(G, 5).items()) == {
|
| 124 |
+
1: {2},
|
| 125 |
+
2: {1},
|
| 126 |
+
3: {2},
|
| 127 |
+
4: {1},
|
| 128 |
+
5: set(),
|
| 129 |
+
}
|
| 130 |
+
|
| 131 |
+
def test_irreducible2(self):
|
| 132 |
+
"""
|
| 133 |
+
Graph taken from figure 4 of "A simple, fast dominance algorithm." (2006).
|
| 134 |
+
https://hdl.handle.net/1911/96345
|
| 135 |
+
"""
|
| 136 |
+
edges = [(1, 2), (2, 1), (2, 3), (3, 2), (4, 2), (4, 3), (5, 1), (6, 4), (6, 5)]
|
| 137 |
+
G = nx.DiGraph(edges)
|
| 138 |
+
assert nx.dominance_frontiers(G, 6) == {
|
| 139 |
+
1: {2},
|
| 140 |
+
2: {1, 3},
|
| 141 |
+
3: {2},
|
| 142 |
+
4: {2, 3},
|
| 143 |
+
5: {1},
|
| 144 |
+
6: set(),
|
| 145 |
+
}
|
| 146 |
+
|
| 147 |
+
def test_domrel_png(self):
|
| 148 |
+
# Graph taken from https://commons.wikipedia.org/wiki/File:Domrel.png
|
| 149 |
+
edges = [(1, 2), (2, 3), (2, 4), (2, 6), (3, 5), (4, 5), (5, 2)]
|
| 150 |
+
G = nx.DiGraph(edges)
|
| 151 |
+
assert nx.dominance_frontiers(G, 1) == {
|
| 152 |
+
1: set(),
|
| 153 |
+
2: {2},
|
| 154 |
+
3: {5},
|
| 155 |
+
4: {5},
|
| 156 |
+
5: {2},
|
| 157 |
+
6: set(),
|
| 158 |
+
}
|
| 159 |
+
# Test postdominance.
|
| 160 |
+
result = nx.dominance_frontiers(G.reverse(copy=False), 6)
|
| 161 |
+
assert result == {1: set(), 2: {2}, 3: {2}, 4: {2}, 5: {2}, 6: set()}
|
| 162 |
+
|
| 163 |
+
def test_boost_example(self):
|
| 164 |
+
# Graph taken from Figure 1 of
|
| 165 |
+
# http://www.boost.org/doc/libs/1_56_0/libs/graph/doc/lengauer_tarjan_dominator.htm
|
| 166 |
+
edges = [(0, 1), (1, 2), (1, 3), (2, 7), (3, 4), (4, 5), (4, 6), (5, 7), (6, 4)]
|
| 167 |
+
G = nx.DiGraph(edges)
|
| 168 |
+
assert nx.dominance_frontiers(G, 0) == {
|
| 169 |
+
0: set(),
|
| 170 |
+
1: set(),
|
| 171 |
+
2: {7},
|
| 172 |
+
3: {7},
|
| 173 |
+
4: {4, 7},
|
| 174 |
+
5: {7},
|
| 175 |
+
6: {4},
|
| 176 |
+
7: set(),
|
| 177 |
+
}
|
| 178 |
+
# Test postdominance.
|
| 179 |
+
result = nx.dominance_frontiers(G.reverse(copy=False), 7)
|
| 180 |
+
expected = {
|
| 181 |
+
0: set(),
|
| 182 |
+
1: set(),
|
| 183 |
+
2: {1},
|
| 184 |
+
3: {1},
|
| 185 |
+
4: {1, 4},
|
| 186 |
+
5: {1},
|
| 187 |
+
6: {4},
|
| 188 |
+
7: set(),
|
| 189 |
+
}
|
| 190 |
+
assert result == expected
|
| 191 |
+
|
| 192 |
+
def test_discard_issue(self):
|
| 193 |
+
# https://github.com/networkx/networkx/issues/2071
|
| 194 |
+
g = nx.DiGraph()
|
| 195 |
+
g.add_edges_from(
|
| 196 |
+
[
|
| 197 |
+
("b0", "b1"),
|
| 198 |
+
("b1", "b2"),
|
| 199 |
+
("b2", "b3"),
|
| 200 |
+
("b3", "b1"),
|
| 201 |
+
("b1", "b5"),
|
| 202 |
+
("b5", "b6"),
|
| 203 |
+
("b5", "b8"),
|
| 204 |
+
("b6", "b7"),
|
| 205 |
+
("b8", "b7"),
|
| 206 |
+
("b7", "b3"),
|
| 207 |
+
("b3", "b4"),
|
| 208 |
+
]
|
| 209 |
+
)
|
| 210 |
+
df = nx.dominance_frontiers(g, "b0")
|
| 211 |
+
assert df == {
|
| 212 |
+
"b4": set(),
|
| 213 |
+
"b5": {"b3"},
|
| 214 |
+
"b6": {"b7"},
|
| 215 |
+
"b7": {"b3"},
|
| 216 |
+
"b0": set(),
|
| 217 |
+
"b1": {"b1"},
|
| 218 |
+
"b2": {"b3"},
|
| 219 |
+
"b3": {"b1"},
|
| 220 |
+
"b8": {"b7"},
|
| 221 |
+
}
|
| 222 |
+
|
| 223 |
+
def test_loop(self):
|
| 224 |
+
g = nx.DiGraph()
|
| 225 |
+
g.add_edges_from([("a", "b"), ("b", "c"), ("b", "a")])
|
| 226 |
+
df = nx.dominance_frontiers(g, "a")
|
| 227 |
+
assert df == {"a": set(), "b": set(), "c": set()}
|
| 228 |
+
|
| 229 |
+
def test_missing_immediate_doms(self):
|
| 230 |
+
# see https://github.com/networkx/networkx/issues/2070
|
| 231 |
+
g = nx.DiGraph()
|
| 232 |
+
edges = [
|
| 233 |
+
("entry_1", "b1"),
|
| 234 |
+
("b1", "b2"),
|
| 235 |
+
("b2", "b3"),
|
| 236 |
+
("b3", "exit"),
|
| 237 |
+
("entry_2", "b3"),
|
| 238 |
+
]
|
| 239 |
+
|
| 240 |
+
# entry_1
|
| 241 |
+
# |
|
| 242 |
+
# b1
|
| 243 |
+
# |
|
| 244 |
+
# b2 entry_2
|
| 245 |
+
# | /
|
| 246 |
+
# b3
|
| 247 |
+
# |
|
| 248 |
+
# exit
|
| 249 |
+
|
| 250 |
+
g.add_edges_from(edges)
|
| 251 |
+
# formerly raised KeyError on entry_2 when parsing b3
|
| 252 |
+
# because entry_2 does not have immediate doms (no path)
|
| 253 |
+
nx.dominance_frontiers(g, "entry_1")
|
| 254 |
+
|
| 255 |
+
def test_loops_larger(self):
|
| 256 |
+
# from
|
| 257 |
+
# http://ecee.colorado.edu/~waite/Darmstadt/motion.html
|
| 258 |
+
g = nx.DiGraph()
|
| 259 |
+
edges = [
|
| 260 |
+
("entry", "exit"),
|
| 261 |
+
("entry", "1"),
|
| 262 |
+
("1", "2"),
|
| 263 |
+
("2", "3"),
|
| 264 |
+
("3", "4"),
|
| 265 |
+
("4", "5"),
|
| 266 |
+
("5", "6"),
|
| 267 |
+
("6", "exit"),
|
| 268 |
+
("6", "2"),
|
| 269 |
+
("5", "3"),
|
| 270 |
+
("4", "4"),
|
| 271 |
+
]
|
| 272 |
+
|
| 273 |
+
g.add_edges_from(edges)
|
| 274 |
+
df = nx.dominance_frontiers(g, "entry")
|
| 275 |
+
answer = {
|
| 276 |
+
"entry": set(),
|
| 277 |
+
"1": {"exit"},
|
| 278 |
+
"2": {"exit", "2"},
|
| 279 |
+
"3": {"exit", "3", "2"},
|
| 280 |
+
"4": {"exit", "4", "3", "2"},
|
| 281 |
+
"5": {"exit", "3", "2"},
|
| 282 |
+
"6": {"exit", "2"},
|
| 283 |
+
"exit": set(),
|
| 284 |
+
}
|
| 285 |
+
for n in df:
|
| 286 |
+
assert set(df[n]) == set(answer[n])
|
code/LaDi-RL-old-qwen-cod/LaDi-RL-old-qwen-cod/venv/lib64/python3.10/site-packages/networkx/algorithms/tests/test_dominating.py
ADDED
|
@@ -0,0 +1,46 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
import pytest
|
| 2 |
+
|
| 3 |
+
import networkx as nx
|
| 4 |
+
|
| 5 |
+
|
| 6 |
+
def test_dominating_set():
|
| 7 |
+
G = nx.gnp_random_graph(100, 0.1)
|
| 8 |
+
D = nx.dominating_set(G)
|
| 9 |
+
assert nx.is_dominating_set(G, D)
|
| 10 |
+
D = nx.dominating_set(G, start_with=0)
|
| 11 |
+
assert nx.is_dominating_set(G, D)
|
| 12 |
+
|
| 13 |
+
|
| 14 |
+
def test_complete():
|
| 15 |
+
"""In complete graphs each node is a dominating set.
|
| 16 |
+
Thus the dominating set has to be of cardinality 1.
|
| 17 |
+
"""
|
| 18 |
+
K4 = nx.complete_graph(4)
|
| 19 |
+
assert len(nx.dominating_set(K4)) == 1
|
| 20 |
+
K5 = nx.complete_graph(5)
|
| 21 |
+
assert len(nx.dominating_set(K5)) == 1
|
| 22 |
+
|
| 23 |
+
|
| 24 |
+
def test_raise_dominating_set():
|
| 25 |
+
with pytest.raises(nx.NetworkXError):
|
| 26 |
+
G = nx.path_graph(4)
|
| 27 |
+
D = nx.dominating_set(G, start_with=10)
|
| 28 |
+
|
| 29 |
+
|
| 30 |
+
def test_is_dominating_set():
|
| 31 |
+
G = nx.path_graph(4)
|
| 32 |
+
d = {1, 3}
|
| 33 |
+
assert nx.is_dominating_set(G, d)
|
| 34 |
+
d = {0, 2}
|
| 35 |
+
assert nx.is_dominating_set(G, d)
|
| 36 |
+
d = {1}
|
| 37 |
+
assert not nx.is_dominating_set(G, d)
|
| 38 |
+
|
| 39 |
+
|
| 40 |
+
def test_wikipedia_is_dominating_set():
|
| 41 |
+
"""Example from https://en.wikipedia.org/wiki/Dominating_set"""
|
| 42 |
+
G = nx.cycle_graph(4)
|
| 43 |
+
G.add_edges_from([(0, 4), (1, 4), (2, 5)])
|
| 44 |
+
assert nx.is_dominating_set(G, {4, 3, 5})
|
| 45 |
+
assert nx.is_dominating_set(G, {0, 2})
|
| 46 |
+
assert nx.is_dominating_set(G, {1, 2})
|
code/LaDi-RL-old-qwen-cod/LaDi-RL-old-qwen-cod/venv/lib64/python3.10/site-packages/networkx/algorithms/tests/test_efficiency.py
ADDED
|
@@ -0,0 +1,58 @@
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|
| 1 |
+
"""Unit tests for the :mod:`networkx.algorithms.efficiency` module."""
|
| 2 |
+
|
| 3 |
+
import networkx as nx
|
| 4 |
+
|
| 5 |
+
|
| 6 |
+
class TestEfficiency:
|
| 7 |
+
def setup_method(self):
|
| 8 |
+
# G1 is a disconnected graph
|
| 9 |
+
self.G1 = nx.Graph()
|
| 10 |
+
self.G1.add_nodes_from([1, 2, 3])
|
| 11 |
+
# G2 is a cycle graph
|
| 12 |
+
self.G2 = nx.cycle_graph(4)
|
| 13 |
+
# G3 is the triangle graph with one additional edge
|
| 14 |
+
self.G3 = nx.lollipop_graph(3, 1)
|
| 15 |
+
|
| 16 |
+
def test_efficiency_disconnected_nodes(self):
|
| 17 |
+
"""
|
| 18 |
+
When nodes are disconnected, efficiency is 0
|
| 19 |
+
"""
|
| 20 |
+
assert nx.efficiency(self.G1, 1, 2) == 0
|
| 21 |
+
|
| 22 |
+
def test_local_efficiency_disconnected_graph(self):
|
| 23 |
+
"""
|
| 24 |
+
In a disconnected graph the efficiency is 0
|
| 25 |
+
"""
|
| 26 |
+
assert nx.local_efficiency(self.G1) == 0
|
| 27 |
+
|
| 28 |
+
def test_efficiency(self):
|
| 29 |
+
assert nx.efficiency(self.G2, 0, 1) == 1
|
| 30 |
+
assert nx.efficiency(self.G2, 0, 2) == 1 / 2
|
| 31 |
+
|
| 32 |
+
def test_global_efficiency(self):
|
| 33 |
+
assert nx.global_efficiency(self.G2) == 5 / 6
|
| 34 |
+
|
| 35 |
+
def test_global_efficiency_complete_graph(self):
|
| 36 |
+
"""
|
| 37 |
+
Tests that the average global efficiency of the complete graph is one.
|
| 38 |
+
"""
|
| 39 |
+
for n in range(2, 10):
|
| 40 |
+
G = nx.complete_graph(n)
|
| 41 |
+
assert nx.global_efficiency(G) == 1
|
| 42 |
+
|
| 43 |
+
def test_local_efficiency_complete_graph(self):
|
| 44 |
+
"""
|
| 45 |
+
Test that the local efficiency for a complete graph with at least 3
|
| 46 |
+
nodes should be one. For a graph with only 2 nodes, the induced
|
| 47 |
+
subgraph has no edges.
|
| 48 |
+
"""
|
| 49 |
+
for n in range(3, 10):
|
| 50 |
+
G = nx.complete_graph(n)
|
| 51 |
+
assert nx.local_efficiency(G) == 1
|
| 52 |
+
|
| 53 |
+
def test_using_ego_graph(self):
|
| 54 |
+
"""
|
| 55 |
+
Test that the ego graph is used when computing local efficiency.
|
| 56 |
+
For more information, see GitHub issue #2710.
|
| 57 |
+
"""
|
| 58 |
+
assert nx.local_efficiency(self.G3) == 7 / 12
|
code/LaDi-RL-old-qwen-cod/LaDi-RL-old-qwen-cod/venv/lib64/python3.10/site-packages/networkx/algorithms/tests/test_euler.py
ADDED
|
@@ -0,0 +1,314 @@
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|
|
|
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|
|
|
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|
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|
|
|
|
|
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|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
|
|
|
|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
import collections
|
| 2 |
+
|
| 3 |
+
import pytest
|
| 4 |
+
|
| 5 |
+
import networkx as nx
|
| 6 |
+
|
| 7 |
+
|
| 8 |
+
@pytest.mark.parametrize("f", (nx.is_eulerian, nx.is_semieulerian))
|
| 9 |
+
def test_empty_graph_raises(f):
|
| 10 |
+
G = nx.Graph()
|
| 11 |
+
with pytest.raises(nx.NetworkXPointlessConcept, match="Connectivity is undefined"):
|
| 12 |
+
f(G)
|
| 13 |
+
|
| 14 |
+
|
| 15 |
+
class TestIsEulerian:
|
| 16 |
+
def test_is_eulerian(self):
|
| 17 |
+
assert nx.is_eulerian(nx.complete_graph(5))
|
| 18 |
+
assert nx.is_eulerian(nx.complete_graph(7))
|
| 19 |
+
assert nx.is_eulerian(nx.hypercube_graph(4))
|
| 20 |
+
assert nx.is_eulerian(nx.hypercube_graph(6))
|
| 21 |
+
|
| 22 |
+
assert not nx.is_eulerian(nx.complete_graph(4))
|
| 23 |
+
assert not nx.is_eulerian(nx.complete_graph(6))
|
| 24 |
+
assert not nx.is_eulerian(nx.hypercube_graph(3))
|
| 25 |
+
assert not nx.is_eulerian(nx.hypercube_graph(5))
|
| 26 |
+
|
| 27 |
+
assert not nx.is_eulerian(nx.petersen_graph())
|
| 28 |
+
assert not nx.is_eulerian(nx.path_graph(4))
|
| 29 |
+
|
| 30 |
+
def test_is_eulerian2(self):
|
| 31 |
+
# not connected
|
| 32 |
+
G = nx.Graph()
|
| 33 |
+
G.add_nodes_from([1, 2, 3])
|
| 34 |
+
assert not nx.is_eulerian(G)
|
| 35 |
+
# not strongly connected
|
| 36 |
+
G = nx.DiGraph()
|
| 37 |
+
G.add_nodes_from([1, 2, 3])
|
| 38 |
+
assert not nx.is_eulerian(G)
|
| 39 |
+
G = nx.MultiDiGraph()
|
| 40 |
+
G.add_edge(1, 2)
|
| 41 |
+
G.add_edge(2, 3)
|
| 42 |
+
G.add_edge(2, 3)
|
| 43 |
+
G.add_edge(3, 1)
|
| 44 |
+
assert not nx.is_eulerian(G)
|
| 45 |
+
|
| 46 |
+
|
| 47 |
+
class TestEulerianCircuit:
|
| 48 |
+
def test_eulerian_circuit_cycle(self):
|
| 49 |
+
G = nx.cycle_graph(4)
|
| 50 |
+
|
| 51 |
+
edges = list(nx.eulerian_circuit(G, source=0))
|
| 52 |
+
nodes = [u for u, v in edges]
|
| 53 |
+
assert nodes == [0, 3, 2, 1]
|
| 54 |
+
assert edges == [(0, 3), (3, 2), (2, 1), (1, 0)]
|
| 55 |
+
|
| 56 |
+
edges = list(nx.eulerian_circuit(G, source=1))
|
| 57 |
+
nodes = [u for u, v in edges]
|
| 58 |
+
assert nodes == [1, 2, 3, 0]
|
| 59 |
+
assert edges == [(1, 2), (2, 3), (3, 0), (0, 1)]
|
| 60 |
+
|
| 61 |
+
G = nx.complete_graph(3)
|
| 62 |
+
|
| 63 |
+
edges = list(nx.eulerian_circuit(G, source=0))
|
| 64 |
+
nodes = [u for u, v in edges]
|
| 65 |
+
assert nodes == [0, 2, 1]
|
| 66 |
+
assert edges == [(0, 2), (2, 1), (1, 0)]
|
| 67 |
+
|
| 68 |
+
edges = list(nx.eulerian_circuit(G, source=1))
|
| 69 |
+
nodes = [u for u, v in edges]
|
| 70 |
+
assert nodes == [1, 2, 0]
|
| 71 |
+
assert edges == [(1, 2), (2, 0), (0, 1)]
|
| 72 |
+
|
| 73 |
+
def test_eulerian_circuit_digraph(self):
|
| 74 |
+
G = nx.DiGraph()
|
| 75 |
+
nx.add_cycle(G, [0, 1, 2, 3])
|
| 76 |
+
|
| 77 |
+
edges = list(nx.eulerian_circuit(G, source=0))
|
| 78 |
+
nodes = [u for u, v in edges]
|
| 79 |
+
assert nodes == [0, 1, 2, 3]
|
| 80 |
+
assert edges == [(0, 1), (1, 2), (2, 3), (3, 0)]
|
| 81 |
+
|
| 82 |
+
edges = list(nx.eulerian_circuit(G, source=1))
|
| 83 |
+
nodes = [u for u, v in edges]
|
| 84 |
+
assert nodes == [1, 2, 3, 0]
|
| 85 |
+
assert edges == [(1, 2), (2, 3), (3, 0), (0, 1)]
|
| 86 |
+
|
| 87 |
+
def test_multigraph(self):
|
| 88 |
+
G = nx.MultiGraph()
|
| 89 |
+
nx.add_cycle(G, [0, 1, 2, 3])
|
| 90 |
+
G.add_edge(1, 2)
|
| 91 |
+
G.add_edge(1, 2)
|
| 92 |
+
edges = list(nx.eulerian_circuit(G, source=0))
|
| 93 |
+
nodes = [u for u, v in edges]
|
| 94 |
+
assert nodes == [0, 3, 2, 1, 2, 1]
|
| 95 |
+
assert edges == [(0, 3), (3, 2), (2, 1), (1, 2), (2, 1), (1, 0)]
|
| 96 |
+
|
| 97 |
+
def test_multigraph_with_keys(self):
|
| 98 |
+
G = nx.MultiGraph()
|
| 99 |
+
nx.add_cycle(G, [0, 1, 2, 3])
|
| 100 |
+
G.add_edge(1, 2)
|
| 101 |
+
G.add_edge(1, 2)
|
| 102 |
+
edges = list(nx.eulerian_circuit(G, source=0, keys=True))
|
| 103 |
+
nodes = [u for u, v, k in edges]
|
| 104 |
+
assert nodes == [0, 3, 2, 1, 2, 1]
|
| 105 |
+
assert edges[:2] == [(0, 3, 0), (3, 2, 0)]
|
| 106 |
+
assert collections.Counter(edges[2:5]) == collections.Counter(
|
| 107 |
+
[(2, 1, 0), (1, 2, 1), (2, 1, 2)]
|
| 108 |
+
)
|
| 109 |
+
assert edges[5:] == [(1, 0, 0)]
|
| 110 |
+
|
| 111 |
+
def test_not_eulerian(self):
|
| 112 |
+
with pytest.raises(nx.NetworkXError):
|
| 113 |
+
f = list(nx.eulerian_circuit(nx.complete_graph(4)))
|
| 114 |
+
|
| 115 |
+
|
| 116 |
+
class TestIsSemiEulerian:
|
| 117 |
+
def test_is_semieulerian(self):
|
| 118 |
+
# Test graphs with Eulerian paths but no cycles return True.
|
| 119 |
+
assert nx.is_semieulerian(nx.path_graph(4))
|
| 120 |
+
G = nx.path_graph(6, create_using=nx.DiGraph)
|
| 121 |
+
assert nx.is_semieulerian(G)
|
| 122 |
+
|
| 123 |
+
# Test graphs with Eulerian cycles return False.
|
| 124 |
+
assert not nx.is_semieulerian(nx.complete_graph(5))
|
| 125 |
+
assert not nx.is_semieulerian(nx.complete_graph(7))
|
| 126 |
+
assert not nx.is_semieulerian(nx.hypercube_graph(4))
|
| 127 |
+
assert not nx.is_semieulerian(nx.hypercube_graph(6))
|
| 128 |
+
|
| 129 |
+
|
| 130 |
+
class TestHasEulerianPath:
|
| 131 |
+
def test_has_eulerian_path_cyclic(self):
|
| 132 |
+
# Test graphs with Eulerian cycles return True.
|
| 133 |
+
assert nx.has_eulerian_path(nx.complete_graph(5))
|
| 134 |
+
assert nx.has_eulerian_path(nx.complete_graph(7))
|
| 135 |
+
assert nx.has_eulerian_path(nx.hypercube_graph(4))
|
| 136 |
+
assert nx.has_eulerian_path(nx.hypercube_graph(6))
|
| 137 |
+
|
| 138 |
+
def test_has_eulerian_path_non_cyclic(self):
|
| 139 |
+
# Test graphs with Eulerian paths but no cycles return True.
|
| 140 |
+
assert nx.has_eulerian_path(nx.path_graph(4))
|
| 141 |
+
G = nx.path_graph(6, create_using=nx.DiGraph)
|
| 142 |
+
assert nx.has_eulerian_path(G)
|
| 143 |
+
|
| 144 |
+
def test_has_eulerian_path_directed_graph(self):
|
| 145 |
+
# Test directed graphs and returns False
|
| 146 |
+
G = nx.DiGraph()
|
| 147 |
+
G.add_edges_from([(0, 1), (1, 2), (0, 2)])
|
| 148 |
+
assert not nx.has_eulerian_path(G)
|
| 149 |
+
|
| 150 |
+
# Test directed graphs without isolated node returns True
|
| 151 |
+
G = nx.DiGraph()
|
| 152 |
+
G.add_edges_from([(0, 1), (1, 2), (2, 0)])
|
| 153 |
+
assert nx.has_eulerian_path(G)
|
| 154 |
+
|
| 155 |
+
# Test directed graphs with isolated node returns False
|
| 156 |
+
G.add_node(3)
|
| 157 |
+
assert not nx.has_eulerian_path(G)
|
| 158 |
+
|
| 159 |
+
@pytest.mark.parametrize("G", (nx.Graph(), nx.DiGraph()))
|
| 160 |
+
def test_has_eulerian_path_not_weakly_connected(self, G):
|
| 161 |
+
G.add_edges_from([(0, 1), (2, 3), (3, 2)])
|
| 162 |
+
assert not nx.has_eulerian_path(G)
|
| 163 |
+
|
| 164 |
+
@pytest.mark.parametrize("G", (nx.Graph(), nx.DiGraph()))
|
| 165 |
+
def test_has_eulerian_path_unbalancedins_more_than_one(self, G):
|
| 166 |
+
G.add_edges_from([(0, 1), (2, 3)])
|
| 167 |
+
assert not nx.has_eulerian_path(G)
|
| 168 |
+
|
| 169 |
+
|
| 170 |
+
class TestFindPathStart:
|
| 171 |
+
def testfind_path_start(self):
|
| 172 |
+
find_path_start = nx.algorithms.euler._find_path_start
|
| 173 |
+
# Test digraphs return correct starting node.
|
| 174 |
+
G = nx.path_graph(6, create_using=nx.DiGraph)
|
| 175 |
+
assert find_path_start(G) == 0
|
| 176 |
+
edges = [(0, 1), (1, 2), (2, 0), (4, 0)]
|
| 177 |
+
assert find_path_start(nx.DiGraph(edges)) == 4
|
| 178 |
+
|
| 179 |
+
# Test graph with no Eulerian path return None.
|
| 180 |
+
edges = [(0, 1), (1, 2), (2, 3), (2, 4)]
|
| 181 |
+
assert find_path_start(nx.DiGraph(edges)) is None
|
| 182 |
+
|
| 183 |
+
|
| 184 |
+
class TestEulerianPath:
|
| 185 |
+
def test_eulerian_path(self):
|
| 186 |
+
x = [(4, 0), (0, 1), (1, 2), (2, 0)]
|
| 187 |
+
for e1, e2 in zip(x, nx.eulerian_path(nx.DiGraph(x))):
|
| 188 |
+
assert e1 == e2
|
| 189 |
+
|
| 190 |
+
def test_eulerian_path_straight_link(self):
|
| 191 |
+
G = nx.DiGraph()
|
| 192 |
+
result = [(1, 2), (2, 3), (3, 4), (4, 5)]
|
| 193 |
+
G.add_edges_from(result)
|
| 194 |
+
assert result == list(nx.eulerian_path(G))
|
| 195 |
+
assert result == list(nx.eulerian_path(G, source=1))
|
| 196 |
+
with pytest.raises(nx.NetworkXError):
|
| 197 |
+
list(nx.eulerian_path(G, source=3))
|
| 198 |
+
with pytest.raises(nx.NetworkXError):
|
| 199 |
+
list(nx.eulerian_path(G, source=4))
|
| 200 |
+
with pytest.raises(nx.NetworkXError):
|
| 201 |
+
list(nx.eulerian_path(G, source=5))
|
| 202 |
+
|
| 203 |
+
def test_eulerian_path_multigraph(self):
|
| 204 |
+
G = nx.MultiDiGraph()
|
| 205 |
+
result = [(2, 1), (1, 2), (2, 1), (1, 2), (2, 3), (3, 4), (4, 3)]
|
| 206 |
+
G.add_edges_from(result)
|
| 207 |
+
assert result == list(nx.eulerian_path(G))
|
| 208 |
+
assert result == list(nx.eulerian_path(G, source=2))
|
| 209 |
+
with pytest.raises(nx.NetworkXError):
|
| 210 |
+
list(nx.eulerian_path(G, source=3))
|
| 211 |
+
with pytest.raises(nx.NetworkXError):
|
| 212 |
+
list(nx.eulerian_path(G, source=4))
|
| 213 |
+
|
| 214 |
+
def test_eulerian_path_eulerian_circuit(self):
|
| 215 |
+
G = nx.DiGraph()
|
| 216 |
+
result = [(1, 2), (2, 3), (3, 4), (4, 1)]
|
| 217 |
+
result2 = [(2, 3), (3, 4), (4, 1), (1, 2)]
|
| 218 |
+
result3 = [(3, 4), (4, 1), (1, 2), (2, 3)]
|
| 219 |
+
G.add_edges_from(result)
|
| 220 |
+
assert result == list(nx.eulerian_path(G))
|
| 221 |
+
assert result == list(nx.eulerian_path(G, source=1))
|
| 222 |
+
assert result2 == list(nx.eulerian_path(G, source=2))
|
| 223 |
+
assert result3 == list(nx.eulerian_path(G, source=3))
|
| 224 |
+
|
| 225 |
+
def test_eulerian_path_undirected(self):
|
| 226 |
+
G = nx.Graph()
|
| 227 |
+
result = [(1, 2), (2, 3), (3, 4), (4, 5)]
|
| 228 |
+
result2 = [(5, 4), (4, 3), (3, 2), (2, 1)]
|
| 229 |
+
G.add_edges_from(result)
|
| 230 |
+
assert list(nx.eulerian_path(G)) in (result, result2)
|
| 231 |
+
assert result == list(nx.eulerian_path(G, source=1))
|
| 232 |
+
assert result2 == list(nx.eulerian_path(G, source=5))
|
| 233 |
+
with pytest.raises(nx.NetworkXError):
|
| 234 |
+
list(nx.eulerian_path(G, source=3))
|
| 235 |
+
with pytest.raises(nx.NetworkXError):
|
| 236 |
+
list(nx.eulerian_path(G, source=2))
|
| 237 |
+
|
| 238 |
+
def test_eulerian_path_multigraph_undirected(self):
|
| 239 |
+
G = nx.MultiGraph()
|
| 240 |
+
result = [(2, 1), (1, 2), (2, 1), (1, 2), (2, 3), (3, 4)]
|
| 241 |
+
G.add_edges_from(result)
|
| 242 |
+
assert result == list(nx.eulerian_path(G))
|
| 243 |
+
assert result == list(nx.eulerian_path(G, source=2))
|
| 244 |
+
with pytest.raises(nx.NetworkXError):
|
| 245 |
+
list(nx.eulerian_path(G, source=3))
|
| 246 |
+
with pytest.raises(nx.NetworkXError):
|
| 247 |
+
list(nx.eulerian_path(G, source=1))
|
| 248 |
+
|
| 249 |
+
@pytest.mark.parametrize(
|
| 250 |
+
("graph_type", "result"),
|
| 251 |
+
(
|
| 252 |
+
(nx.MultiGraph, [(0, 1, 0), (1, 0, 1)]),
|
| 253 |
+
(nx.MultiDiGraph, [(0, 1, 0), (1, 0, 0)]),
|
| 254 |
+
),
|
| 255 |
+
)
|
| 256 |
+
def test_eulerian_with_keys(self, graph_type, result):
|
| 257 |
+
G = graph_type([(0, 1), (1, 0)])
|
| 258 |
+
answer = nx.eulerian_path(G, keys=True)
|
| 259 |
+
assert list(answer) == result
|
| 260 |
+
|
| 261 |
+
|
| 262 |
+
class TestEulerize:
|
| 263 |
+
def test_disconnected(self):
|
| 264 |
+
with pytest.raises(nx.NetworkXError):
|
| 265 |
+
G = nx.from_edgelist([(0, 1), (2, 3)])
|
| 266 |
+
nx.eulerize(G)
|
| 267 |
+
|
| 268 |
+
def test_null_graph(self):
|
| 269 |
+
with pytest.raises(nx.NetworkXPointlessConcept):
|
| 270 |
+
nx.eulerize(nx.Graph())
|
| 271 |
+
|
| 272 |
+
def test_null_multigraph(self):
|
| 273 |
+
with pytest.raises(nx.NetworkXPointlessConcept):
|
| 274 |
+
nx.eulerize(nx.MultiGraph())
|
| 275 |
+
|
| 276 |
+
def test_on_empty_graph(self):
|
| 277 |
+
with pytest.raises(nx.NetworkXError):
|
| 278 |
+
nx.eulerize(nx.empty_graph(3))
|
| 279 |
+
|
| 280 |
+
def test_on_eulerian(self):
|
| 281 |
+
G = nx.cycle_graph(3)
|
| 282 |
+
H = nx.eulerize(G)
|
| 283 |
+
assert nx.is_isomorphic(G, H)
|
| 284 |
+
|
| 285 |
+
def test_on_eulerian_multigraph(self):
|
| 286 |
+
G = nx.MultiGraph(nx.cycle_graph(3))
|
| 287 |
+
G.add_edge(0, 1)
|
| 288 |
+
H = nx.eulerize(G)
|
| 289 |
+
assert nx.is_eulerian(H)
|
| 290 |
+
|
| 291 |
+
def test_on_complete_graph(self):
|
| 292 |
+
G = nx.complete_graph(4)
|
| 293 |
+
assert nx.is_eulerian(nx.eulerize(G))
|
| 294 |
+
assert nx.is_eulerian(nx.eulerize(nx.MultiGraph(G)))
|
| 295 |
+
|
| 296 |
+
def test_on_non_eulerian_graph(self):
|
| 297 |
+
G = nx.cycle_graph(18)
|
| 298 |
+
G.add_edge(0, 18)
|
| 299 |
+
G.add_edge(18, 19)
|
| 300 |
+
G.add_edge(17, 19)
|
| 301 |
+
G.add_edge(4, 20)
|
| 302 |
+
G.add_edge(20, 21)
|
| 303 |
+
G.add_edge(21, 22)
|
| 304 |
+
G.add_edge(22, 23)
|
| 305 |
+
G.add_edge(23, 24)
|
| 306 |
+
G.add_edge(24, 25)
|
| 307 |
+
G.add_edge(25, 26)
|
| 308 |
+
G.add_edge(26, 27)
|
| 309 |
+
G.add_edge(27, 28)
|
| 310 |
+
G.add_edge(28, 13)
|
| 311 |
+
assert not nx.is_eulerian(G)
|
| 312 |
+
G = nx.eulerize(G)
|
| 313 |
+
assert nx.is_eulerian(G)
|
| 314 |
+
assert nx.number_of_edges(G) == 39
|
code/LaDi-RL-old-qwen-cod/LaDi-RL-old-qwen-cod/venv/lib64/python3.10/site-packages/networkx/algorithms/tests/test_graph_hashing.py
ADDED
|
@@ -0,0 +1,686 @@
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|
| 1 |
+
import pytest
|
| 2 |
+
|
| 3 |
+
import networkx as nx
|
| 4 |
+
from networkx.generators import directed
|
| 5 |
+
|
| 6 |
+
# Unit tests for the :func:`~networkx.weisfeiler_lehman_graph_hash` function
|
| 7 |
+
|
| 8 |
+
|
| 9 |
+
def test_empty_graph_hash():
|
| 10 |
+
"""
|
| 11 |
+
empty graphs should give hashes regardless of other params
|
| 12 |
+
"""
|
| 13 |
+
G1 = nx.empty_graph()
|
| 14 |
+
G2 = nx.empty_graph()
|
| 15 |
+
|
| 16 |
+
h1 = nx.weisfeiler_lehman_graph_hash(G1)
|
| 17 |
+
h2 = nx.weisfeiler_lehman_graph_hash(G2)
|
| 18 |
+
h3 = nx.weisfeiler_lehman_graph_hash(G2, edge_attr="edge_attr1")
|
| 19 |
+
h4 = nx.weisfeiler_lehman_graph_hash(G2, node_attr="node_attr1")
|
| 20 |
+
h5 = nx.weisfeiler_lehman_graph_hash(
|
| 21 |
+
G2, edge_attr="edge_attr1", node_attr="node_attr1"
|
| 22 |
+
)
|
| 23 |
+
h6 = nx.weisfeiler_lehman_graph_hash(G2, iterations=10)
|
| 24 |
+
|
| 25 |
+
assert h1 == h2
|
| 26 |
+
assert h1 == h3
|
| 27 |
+
assert h1 == h4
|
| 28 |
+
assert h1 == h5
|
| 29 |
+
assert h1 == h6
|
| 30 |
+
|
| 31 |
+
|
| 32 |
+
def test_directed():
|
| 33 |
+
"""
|
| 34 |
+
A directed graph with no bi-directional edges should yield different a graph hash
|
| 35 |
+
to the same graph taken as undirected if there are no hash collisions.
|
| 36 |
+
"""
|
| 37 |
+
r = 10
|
| 38 |
+
for i in range(r):
|
| 39 |
+
G_directed = nx.gn_graph(10 + r, seed=100 + i)
|
| 40 |
+
G_undirected = nx.to_undirected(G_directed)
|
| 41 |
+
|
| 42 |
+
h_directed = nx.weisfeiler_lehman_graph_hash(G_directed)
|
| 43 |
+
h_undirected = nx.weisfeiler_lehman_graph_hash(G_undirected)
|
| 44 |
+
|
| 45 |
+
assert h_directed != h_undirected
|
| 46 |
+
|
| 47 |
+
|
| 48 |
+
def test_reversed():
|
| 49 |
+
"""
|
| 50 |
+
A directed graph with no bi-directional edges should yield different a graph hash
|
| 51 |
+
to the same graph taken with edge directions reversed if there are no hash collisions.
|
| 52 |
+
Here we test a cycle graph which is the minimal counterexample
|
| 53 |
+
"""
|
| 54 |
+
G = nx.cycle_graph(5, create_using=nx.DiGraph)
|
| 55 |
+
nx.set_node_attributes(G, {n: str(n) for n in G.nodes()}, name="label")
|
| 56 |
+
|
| 57 |
+
G_reversed = G.reverse()
|
| 58 |
+
|
| 59 |
+
h = nx.weisfeiler_lehman_graph_hash(G, node_attr="label")
|
| 60 |
+
h_reversed = nx.weisfeiler_lehman_graph_hash(G_reversed, node_attr="label")
|
| 61 |
+
|
| 62 |
+
assert h != h_reversed
|
| 63 |
+
|
| 64 |
+
|
| 65 |
+
def test_isomorphic():
|
| 66 |
+
"""
|
| 67 |
+
graph hashes should be invariant to node-relabeling (when the output is reindexed
|
| 68 |
+
by the same mapping)
|
| 69 |
+
"""
|
| 70 |
+
n, r = 100, 10
|
| 71 |
+
p = 1.0 / r
|
| 72 |
+
for i in range(1, r + 1):
|
| 73 |
+
G1 = nx.erdos_renyi_graph(n, p * i, seed=200 + i)
|
| 74 |
+
G2 = nx.relabel_nodes(G1, {u: -1 * u for u in G1.nodes()})
|
| 75 |
+
|
| 76 |
+
g1_hash = nx.weisfeiler_lehman_graph_hash(G1)
|
| 77 |
+
g2_hash = nx.weisfeiler_lehman_graph_hash(G2)
|
| 78 |
+
|
| 79 |
+
assert g1_hash == g2_hash
|
| 80 |
+
|
| 81 |
+
|
| 82 |
+
def test_isomorphic_edge_attr():
|
| 83 |
+
"""
|
| 84 |
+
Isomorphic graphs with differing edge attributes should yield different graph
|
| 85 |
+
hashes if the 'edge_attr' argument is supplied and populated in the graph,
|
| 86 |
+
and there are no hash collisions.
|
| 87 |
+
The output should still be invariant to node-relabeling
|
| 88 |
+
"""
|
| 89 |
+
n, r = 100, 10
|
| 90 |
+
p = 1.0 / r
|
| 91 |
+
for i in range(1, r + 1):
|
| 92 |
+
G1 = nx.erdos_renyi_graph(n, p * i, seed=300 + i)
|
| 93 |
+
|
| 94 |
+
for a, b in G1.edges:
|
| 95 |
+
G1[a][b]["edge_attr1"] = f"{a}-{b}-1"
|
| 96 |
+
G1[a][b]["edge_attr2"] = f"{a}-{b}-2"
|
| 97 |
+
|
| 98 |
+
g1_hash_with_edge_attr1 = nx.weisfeiler_lehman_graph_hash(
|
| 99 |
+
G1, edge_attr="edge_attr1"
|
| 100 |
+
)
|
| 101 |
+
g1_hash_with_edge_attr2 = nx.weisfeiler_lehman_graph_hash(
|
| 102 |
+
G1, edge_attr="edge_attr2"
|
| 103 |
+
)
|
| 104 |
+
g1_hash_no_edge_attr = nx.weisfeiler_lehman_graph_hash(G1, edge_attr=None)
|
| 105 |
+
|
| 106 |
+
assert g1_hash_with_edge_attr1 != g1_hash_no_edge_attr
|
| 107 |
+
assert g1_hash_with_edge_attr2 != g1_hash_no_edge_attr
|
| 108 |
+
assert g1_hash_with_edge_attr1 != g1_hash_with_edge_attr2
|
| 109 |
+
|
| 110 |
+
G2 = nx.relabel_nodes(G1, {u: -1 * u for u in G1.nodes()})
|
| 111 |
+
|
| 112 |
+
g2_hash_with_edge_attr1 = nx.weisfeiler_lehman_graph_hash(
|
| 113 |
+
G2, edge_attr="edge_attr1"
|
| 114 |
+
)
|
| 115 |
+
g2_hash_with_edge_attr2 = nx.weisfeiler_lehman_graph_hash(
|
| 116 |
+
G2, edge_attr="edge_attr2"
|
| 117 |
+
)
|
| 118 |
+
|
| 119 |
+
assert g1_hash_with_edge_attr1 == g2_hash_with_edge_attr1
|
| 120 |
+
assert g1_hash_with_edge_attr2 == g2_hash_with_edge_attr2
|
| 121 |
+
|
| 122 |
+
|
| 123 |
+
def test_missing_edge_attr():
|
| 124 |
+
"""
|
| 125 |
+
If the 'edge_attr' argument is supplied but is missing from an edge in the graph,
|
| 126 |
+
we should raise a KeyError
|
| 127 |
+
"""
|
| 128 |
+
G = nx.Graph()
|
| 129 |
+
G.add_edges_from([(1, 2, {"edge_attr1": "a"}), (1, 3, {})])
|
| 130 |
+
pytest.raises(KeyError, nx.weisfeiler_lehman_graph_hash, G, edge_attr="edge_attr1")
|
| 131 |
+
|
| 132 |
+
|
| 133 |
+
def test_isomorphic_node_attr():
|
| 134 |
+
"""
|
| 135 |
+
Isomorphic graphs with differing node attributes should yield different graph
|
| 136 |
+
hashes if the 'node_attr' argument is supplied and populated in the graph, and
|
| 137 |
+
there are no hash collisions.
|
| 138 |
+
The output should still be invariant to node-relabeling
|
| 139 |
+
"""
|
| 140 |
+
n, r = 100, 10
|
| 141 |
+
p = 1.0 / r
|
| 142 |
+
for i in range(1, r + 1):
|
| 143 |
+
G1 = nx.erdos_renyi_graph(n, p * i, seed=400 + i)
|
| 144 |
+
|
| 145 |
+
for u in G1.nodes():
|
| 146 |
+
G1.nodes[u]["node_attr1"] = f"{u}-1"
|
| 147 |
+
G1.nodes[u]["node_attr2"] = f"{u}-2"
|
| 148 |
+
|
| 149 |
+
g1_hash_with_node_attr1 = nx.weisfeiler_lehman_graph_hash(
|
| 150 |
+
G1, node_attr="node_attr1"
|
| 151 |
+
)
|
| 152 |
+
g1_hash_with_node_attr2 = nx.weisfeiler_lehman_graph_hash(
|
| 153 |
+
G1, node_attr="node_attr2"
|
| 154 |
+
)
|
| 155 |
+
g1_hash_no_node_attr = nx.weisfeiler_lehman_graph_hash(G1, node_attr=None)
|
| 156 |
+
|
| 157 |
+
assert g1_hash_with_node_attr1 != g1_hash_no_node_attr
|
| 158 |
+
assert g1_hash_with_node_attr2 != g1_hash_no_node_attr
|
| 159 |
+
assert g1_hash_with_node_attr1 != g1_hash_with_node_attr2
|
| 160 |
+
|
| 161 |
+
G2 = nx.relabel_nodes(G1, {u: -1 * u for u in G1.nodes()})
|
| 162 |
+
|
| 163 |
+
g2_hash_with_node_attr1 = nx.weisfeiler_lehman_graph_hash(
|
| 164 |
+
G2, node_attr="node_attr1"
|
| 165 |
+
)
|
| 166 |
+
g2_hash_with_node_attr2 = nx.weisfeiler_lehman_graph_hash(
|
| 167 |
+
G2, node_attr="node_attr2"
|
| 168 |
+
)
|
| 169 |
+
|
| 170 |
+
assert g1_hash_with_node_attr1 == g2_hash_with_node_attr1
|
| 171 |
+
assert g1_hash_with_node_attr2 == g2_hash_with_node_attr2
|
| 172 |
+
|
| 173 |
+
|
| 174 |
+
def test_missing_node_attr():
|
| 175 |
+
"""
|
| 176 |
+
If the 'node_attr' argument is supplied but is missing from a node in the graph,
|
| 177 |
+
we should raise a KeyError
|
| 178 |
+
"""
|
| 179 |
+
G = nx.Graph()
|
| 180 |
+
G.add_nodes_from([(1, {"node_attr1": "a"}), (2, {})])
|
| 181 |
+
G.add_edges_from([(1, 2), (2, 3), (3, 1), (1, 4)])
|
| 182 |
+
pytest.raises(KeyError, nx.weisfeiler_lehman_graph_hash, G, node_attr="node_attr1")
|
| 183 |
+
|
| 184 |
+
|
| 185 |
+
def test_isomorphic_edge_attr_and_node_attr():
|
| 186 |
+
"""
|
| 187 |
+
Isomorphic graphs with differing node attributes should yield different graph
|
| 188 |
+
hashes if the 'node_attr' and 'edge_attr' argument is supplied and populated in
|
| 189 |
+
the graph, and there are no hash collisions.
|
| 190 |
+
The output should still be invariant to node-relabeling
|
| 191 |
+
"""
|
| 192 |
+
n, r = 100, 10
|
| 193 |
+
p = 1.0 / r
|
| 194 |
+
for i in range(1, r + 1):
|
| 195 |
+
G1 = nx.erdos_renyi_graph(n, p * i, seed=500 + i)
|
| 196 |
+
|
| 197 |
+
for u in G1.nodes():
|
| 198 |
+
G1.nodes[u]["node_attr1"] = f"{u}-1"
|
| 199 |
+
G1.nodes[u]["node_attr2"] = f"{u}-2"
|
| 200 |
+
|
| 201 |
+
for a, b in G1.edges:
|
| 202 |
+
G1[a][b]["edge_attr1"] = f"{a}-{b}-1"
|
| 203 |
+
G1[a][b]["edge_attr2"] = f"{a}-{b}-2"
|
| 204 |
+
|
| 205 |
+
g1_hash_edge1_node1 = nx.weisfeiler_lehman_graph_hash(
|
| 206 |
+
G1, edge_attr="edge_attr1", node_attr="node_attr1"
|
| 207 |
+
)
|
| 208 |
+
g1_hash_edge2_node2 = nx.weisfeiler_lehman_graph_hash(
|
| 209 |
+
G1, edge_attr="edge_attr2", node_attr="node_attr2"
|
| 210 |
+
)
|
| 211 |
+
g1_hash_edge1_node2 = nx.weisfeiler_lehman_graph_hash(
|
| 212 |
+
G1, edge_attr="edge_attr1", node_attr="node_attr2"
|
| 213 |
+
)
|
| 214 |
+
g1_hash_no_attr = nx.weisfeiler_lehman_graph_hash(G1)
|
| 215 |
+
|
| 216 |
+
assert g1_hash_edge1_node1 != g1_hash_no_attr
|
| 217 |
+
assert g1_hash_edge2_node2 != g1_hash_no_attr
|
| 218 |
+
assert g1_hash_edge1_node1 != g1_hash_edge2_node2
|
| 219 |
+
assert g1_hash_edge1_node2 != g1_hash_edge2_node2
|
| 220 |
+
assert g1_hash_edge1_node2 != g1_hash_edge1_node1
|
| 221 |
+
|
| 222 |
+
G2 = nx.relabel_nodes(G1, {u: -1 * u for u in G1.nodes()})
|
| 223 |
+
|
| 224 |
+
g2_hash_edge1_node1 = nx.weisfeiler_lehman_graph_hash(
|
| 225 |
+
G2, edge_attr="edge_attr1", node_attr="node_attr1"
|
| 226 |
+
)
|
| 227 |
+
g2_hash_edge2_node2 = nx.weisfeiler_lehman_graph_hash(
|
| 228 |
+
G2, edge_attr="edge_attr2", node_attr="node_attr2"
|
| 229 |
+
)
|
| 230 |
+
|
| 231 |
+
assert g1_hash_edge1_node1 == g2_hash_edge1_node1
|
| 232 |
+
assert g1_hash_edge2_node2 == g2_hash_edge2_node2
|
| 233 |
+
|
| 234 |
+
|
| 235 |
+
def test_digest_size():
|
| 236 |
+
"""
|
| 237 |
+
The hash string lengths should be as expected for a variety of graphs and
|
| 238 |
+
digest sizes
|
| 239 |
+
"""
|
| 240 |
+
n, r = 100, 10
|
| 241 |
+
p = 1.0 / r
|
| 242 |
+
for i in range(1, r + 1):
|
| 243 |
+
G = nx.erdos_renyi_graph(n, p * i, seed=1000 + i)
|
| 244 |
+
|
| 245 |
+
h16 = nx.weisfeiler_lehman_graph_hash(G)
|
| 246 |
+
h32 = nx.weisfeiler_lehman_graph_hash(G, digest_size=32)
|
| 247 |
+
|
| 248 |
+
assert h16 != h32
|
| 249 |
+
assert len(h16) == 16 * 2
|
| 250 |
+
assert len(h32) == 32 * 2
|
| 251 |
+
|
| 252 |
+
|
| 253 |
+
# Unit tests for the :func:`~networkx.weisfeiler_lehman_hash_subgraphs` function
|
| 254 |
+
|
| 255 |
+
|
| 256 |
+
def is_subiteration(a, b):
|
| 257 |
+
"""
|
| 258 |
+
returns True if that each hash sequence in 'a' is a prefix for
|
| 259 |
+
the corresponding sequence indexed by the same node in 'b'.
|
| 260 |
+
"""
|
| 261 |
+
return all(b[node][: len(hashes)] == hashes for node, hashes in a.items())
|
| 262 |
+
|
| 263 |
+
|
| 264 |
+
def hexdigest_sizes_correct(a, digest_size):
|
| 265 |
+
"""
|
| 266 |
+
returns True if all hex digest sizes are the expected length in a node:subgraph-hashes
|
| 267 |
+
dictionary. Hex digest string length == 2 * bytes digest length since each pair of hex
|
| 268 |
+
digits encodes 1 byte (https://docs.python.org/3/library/hashlib.html)
|
| 269 |
+
"""
|
| 270 |
+
hexdigest_size = digest_size * 2
|
| 271 |
+
list_digest_sizes_correct = lambda l: all(len(x) == hexdigest_size for x in l)
|
| 272 |
+
return all(list_digest_sizes_correct(hashes) for hashes in a.values())
|
| 273 |
+
|
| 274 |
+
|
| 275 |
+
def test_empty_graph_subgraph_hash():
|
| 276 |
+
""" "
|
| 277 |
+
empty graphs should give empty dict subgraph hashes regardless of other params
|
| 278 |
+
"""
|
| 279 |
+
G = nx.empty_graph()
|
| 280 |
+
|
| 281 |
+
subgraph_hashes1 = nx.weisfeiler_lehman_subgraph_hashes(G)
|
| 282 |
+
subgraph_hashes2 = nx.weisfeiler_lehman_subgraph_hashes(G, edge_attr="edge_attr")
|
| 283 |
+
subgraph_hashes3 = nx.weisfeiler_lehman_subgraph_hashes(G, node_attr="edge_attr")
|
| 284 |
+
subgraph_hashes4 = nx.weisfeiler_lehman_subgraph_hashes(G, iterations=2)
|
| 285 |
+
subgraph_hashes5 = nx.weisfeiler_lehman_subgraph_hashes(G, digest_size=64)
|
| 286 |
+
|
| 287 |
+
assert subgraph_hashes1 == {}
|
| 288 |
+
assert subgraph_hashes2 == {}
|
| 289 |
+
assert subgraph_hashes3 == {}
|
| 290 |
+
assert subgraph_hashes4 == {}
|
| 291 |
+
assert subgraph_hashes5 == {}
|
| 292 |
+
|
| 293 |
+
|
| 294 |
+
def test_directed_subgraph_hash():
|
| 295 |
+
"""
|
| 296 |
+
A directed graph with no bi-directional edges should yield different subgraph hashes
|
| 297 |
+
to the same graph taken as undirected, if all hashes don't collide.
|
| 298 |
+
"""
|
| 299 |
+
r = 10
|
| 300 |
+
for i in range(r):
|
| 301 |
+
G_directed = nx.gn_graph(10 + r, seed=100 + i)
|
| 302 |
+
G_undirected = nx.to_undirected(G_directed)
|
| 303 |
+
|
| 304 |
+
directed_subgraph_hashes = nx.weisfeiler_lehman_subgraph_hashes(G_directed)
|
| 305 |
+
undirected_subgraph_hashes = nx.weisfeiler_lehman_subgraph_hashes(G_undirected)
|
| 306 |
+
|
| 307 |
+
assert directed_subgraph_hashes != undirected_subgraph_hashes
|
| 308 |
+
|
| 309 |
+
|
| 310 |
+
def test_reversed_subgraph_hash():
|
| 311 |
+
"""
|
| 312 |
+
A directed graph with no bi-directional edges should yield different subgraph hashes
|
| 313 |
+
to the same graph taken with edge directions reversed if there are no hash collisions.
|
| 314 |
+
Here we test a cycle graph which is the minimal counterexample
|
| 315 |
+
"""
|
| 316 |
+
G = nx.cycle_graph(5, create_using=nx.DiGraph)
|
| 317 |
+
nx.set_node_attributes(G, {n: str(n) for n in G.nodes()}, name="label")
|
| 318 |
+
|
| 319 |
+
G_reversed = G.reverse()
|
| 320 |
+
|
| 321 |
+
h = nx.weisfeiler_lehman_subgraph_hashes(G, node_attr="label")
|
| 322 |
+
h_reversed = nx.weisfeiler_lehman_subgraph_hashes(G_reversed, node_attr="label")
|
| 323 |
+
|
| 324 |
+
assert h != h_reversed
|
| 325 |
+
|
| 326 |
+
|
| 327 |
+
def test_isomorphic_subgraph_hash():
|
| 328 |
+
"""
|
| 329 |
+
the subgraph hashes should be invariant to node-relabeling when the output is reindexed
|
| 330 |
+
by the same mapping and all hashes don't collide.
|
| 331 |
+
"""
|
| 332 |
+
n, r = 100, 10
|
| 333 |
+
p = 1.0 / r
|
| 334 |
+
for i in range(1, r + 1):
|
| 335 |
+
G1 = nx.erdos_renyi_graph(n, p * i, seed=200 + i)
|
| 336 |
+
G2 = nx.relabel_nodes(G1, {u: -1 * u for u in G1.nodes()})
|
| 337 |
+
|
| 338 |
+
g1_subgraph_hashes = nx.weisfeiler_lehman_subgraph_hashes(G1)
|
| 339 |
+
g2_subgraph_hashes = nx.weisfeiler_lehman_subgraph_hashes(G2)
|
| 340 |
+
|
| 341 |
+
assert g1_subgraph_hashes == {-1 * k: v for k, v in g2_subgraph_hashes.items()}
|
| 342 |
+
|
| 343 |
+
|
| 344 |
+
def test_isomorphic_edge_attr_subgraph_hash():
|
| 345 |
+
"""
|
| 346 |
+
Isomorphic graphs with differing edge attributes should yield different subgraph
|
| 347 |
+
hashes if the 'edge_attr' argument is supplied and populated in the graph, and
|
| 348 |
+
all hashes don't collide.
|
| 349 |
+
The output should still be invariant to node-relabeling
|
| 350 |
+
"""
|
| 351 |
+
n, r = 100, 10
|
| 352 |
+
p = 1.0 / r
|
| 353 |
+
for i in range(1, r + 1):
|
| 354 |
+
G1 = nx.erdos_renyi_graph(n, p * i, seed=300 + i)
|
| 355 |
+
|
| 356 |
+
for a, b in G1.edges:
|
| 357 |
+
G1[a][b]["edge_attr1"] = f"{a}-{b}-1"
|
| 358 |
+
G1[a][b]["edge_attr2"] = f"{a}-{b}-2"
|
| 359 |
+
|
| 360 |
+
g1_hash_with_edge_attr1 = nx.weisfeiler_lehman_subgraph_hashes(
|
| 361 |
+
G1, edge_attr="edge_attr1"
|
| 362 |
+
)
|
| 363 |
+
g1_hash_with_edge_attr2 = nx.weisfeiler_lehman_subgraph_hashes(
|
| 364 |
+
G1, edge_attr="edge_attr2"
|
| 365 |
+
)
|
| 366 |
+
g1_hash_no_edge_attr = nx.weisfeiler_lehman_subgraph_hashes(G1, edge_attr=None)
|
| 367 |
+
|
| 368 |
+
assert g1_hash_with_edge_attr1 != g1_hash_no_edge_attr
|
| 369 |
+
assert g1_hash_with_edge_attr2 != g1_hash_no_edge_attr
|
| 370 |
+
assert g1_hash_with_edge_attr1 != g1_hash_with_edge_attr2
|
| 371 |
+
|
| 372 |
+
G2 = nx.relabel_nodes(G1, {u: -1 * u for u in G1.nodes()})
|
| 373 |
+
|
| 374 |
+
g2_hash_with_edge_attr1 = nx.weisfeiler_lehman_subgraph_hashes(
|
| 375 |
+
G2, edge_attr="edge_attr1"
|
| 376 |
+
)
|
| 377 |
+
g2_hash_with_edge_attr2 = nx.weisfeiler_lehman_subgraph_hashes(
|
| 378 |
+
G2, edge_attr="edge_attr2"
|
| 379 |
+
)
|
| 380 |
+
|
| 381 |
+
assert g1_hash_with_edge_attr1 == {
|
| 382 |
+
-1 * k: v for k, v in g2_hash_with_edge_attr1.items()
|
| 383 |
+
}
|
| 384 |
+
assert g1_hash_with_edge_attr2 == {
|
| 385 |
+
-1 * k: v for k, v in g2_hash_with_edge_attr2.items()
|
| 386 |
+
}
|
| 387 |
+
|
| 388 |
+
|
| 389 |
+
def test_missing_edge_attr_subgraph_hash():
|
| 390 |
+
"""
|
| 391 |
+
If the 'edge_attr' argument is supplied but is missing from an edge in the graph,
|
| 392 |
+
we should raise a KeyError
|
| 393 |
+
"""
|
| 394 |
+
G = nx.Graph()
|
| 395 |
+
G.add_edges_from([(1, 2, {"edge_attr1": "a"}), (1, 3, {})])
|
| 396 |
+
pytest.raises(
|
| 397 |
+
KeyError, nx.weisfeiler_lehman_subgraph_hashes, G, edge_attr="edge_attr1"
|
| 398 |
+
)
|
| 399 |
+
|
| 400 |
+
|
| 401 |
+
def test_isomorphic_node_attr_subgraph_hash():
|
| 402 |
+
"""
|
| 403 |
+
Isomorphic graphs with differing node attributes should yield different subgraph
|
| 404 |
+
hashes if the 'node_attr' argument is supplied and populated in the graph, and
|
| 405 |
+
all hashes don't collide.
|
| 406 |
+
The output should still be invariant to node-relabeling
|
| 407 |
+
"""
|
| 408 |
+
n, r = 100, 10
|
| 409 |
+
p = 1.0 / r
|
| 410 |
+
for i in range(1, r + 1):
|
| 411 |
+
G1 = nx.erdos_renyi_graph(n, p * i, seed=400 + i)
|
| 412 |
+
|
| 413 |
+
for u in G1.nodes():
|
| 414 |
+
G1.nodes[u]["node_attr1"] = f"{u}-1"
|
| 415 |
+
G1.nodes[u]["node_attr2"] = f"{u}-2"
|
| 416 |
+
|
| 417 |
+
g1_hash_with_node_attr1 = nx.weisfeiler_lehman_subgraph_hashes(
|
| 418 |
+
G1, node_attr="node_attr1"
|
| 419 |
+
)
|
| 420 |
+
g1_hash_with_node_attr2 = nx.weisfeiler_lehman_subgraph_hashes(
|
| 421 |
+
G1, node_attr="node_attr2"
|
| 422 |
+
)
|
| 423 |
+
g1_hash_no_node_attr = nx.weisfeiler_lehman_subgraph_hashes(G1, node_attr=None)
|
| 424 |
+
|
| 425 |
+
assert g1_hash_with_node_attr1 != g1_hash_no_node_attr
|
| 426 |
+
assert g1_hash_with_node_attr2 != g1_hash_no_node_attr
|
| 427 |
+
assert g1_hash_with_node_attr1 != g1_hash_with_node_attr2
|
| 428 |
+
|
| 429 |
+
G2 = nx.relabel_nodes(G1, {u: -1 * u for u in G1.nodes()})
|
| 430 |
+
|
| 431 |
+
g2_hash_with_node_attr1 = nx.weisfeiler_lehman_subgraph_hashes(
|
| 432 |
+
G2, node_attr="node_attr1"
|
| 433 |
+
)
|
| 434 |
+
g2_hash_with_node_attr2 = nx.weisfeiler_lehman_subgraph_hashes(
|
| 435 |
+
G2, node_attr="node_attr2"
|
| 436 |
+
)
|
| 437 |
+
|
| 438 |
+
assert g1_hash_with_node_attr1 == {
|
| 439 |
+
-1 * k: v for k, v in g2_hash_with_node_attr1.items()
|
| 440 |
+
}
|
| 441 |
+
assert g1_hash_with_node_attr2 == {
|
| 442 |
+
-1 * k: v for k, v in g2_hash_with_node_attr2.items()
|
| 443 |
+
}
|
| 444 |
+
|
| 445 |
+
|
| 446 |
+
def test_missing_node_attr_subgraph_hash():
|
| 447 |
+
"""
|
| 448 |
+
If the 'node_attr' argument is supplied but is missing from a node in the graph,
|
| 449 |
+
we should raise a KeyError
|
| 450 |
+
"""
|
| 451 |
+
G = nx.Graph()
|
| 452 |
+
G.add_nodes_from([(1, {"node_attr1": "a"}), (2, {})])
|
| 453 |
+
G.add_edges_from([(1, 2), (2, 3), (3, 1), (1, 4)])
|
| 454 |
+
pytest.raises(
|
| 455 |
+
KeyError, nx.weisfeiler_lehman_subgraph_hashes, G, node_attr="node_attr1"
|
| 456 |
+
)
|
| 457 |
+
|
| 458 |
+
|
| 459 |
+
def test_isomorphic_edge_attr_and_node_attr_subgraph_hash():
|
| 460 |
+
"""
|
| 461 |
+
Isomorphic graphs with differing node attributes should yield different subgraph
|
| 462 |
+
hashes if the 'node_attr' and 'edge_attr' argument is supplied and populated in
|
| 463 |
+
the graph, and all hashes don't collide
|
| 464 |
+
The output should still be invariant to node-relabeling
|
| 465 |
+
"""
|
| 466 |
+
n, r = 100, 10
|
| 467 |
+
p = 1.0 / r
|
| 468 |
+
for i in range(1, r + 1):
|
| 469 |
+
G1 = nx.erdos_renyi_graph(n, p * i, seed=500 + i)
|
| 470 |
+
|
| 471 |
+
for u in G1.nodes():
|
| 472 |
+
G1.nodes[u]["node_attr1"] = f"{u}-1"
|
| 473 |
+
G1.nodes[u]["node_attr2"] = f"{u}-2"
|
| 474 |
+
|
| 475 |
+
for a, b in G1.edges:
|
| 476 |
+
G1[a][b]["edge_attr1"] = f"{a}-{b}-1"
|
| 477 |
+
G1[a][b]["edge_attr2"] = f"{a}-{b}-2"
|
| 478 |
+
|
| 479 |
+
g1_hash_edge1_node1 = nx.weisfeiler_lehman_subgraph_hashes(
|
| 480 |
+
G1, edge_attr="edge_attr1", node_attr="node_attr1"
|
| 481 |
+
)
|
| 482 |
+
g1_hash_edge2_node2 = nx.weisfeiler_lehman_subgraph_hashes(
|
| 483 |
+
G1, edge_attr="edge_attr2", node_attr="node_attr2"
|
| 484 |
+
)
|
| 485 |
+
g1_hash_edge1_node2 = nx.weisfeiler_lehman_subgraph_hashes(
|
| 486 |
+
G1, edge_attr="edge_attr1", node_attr="node_attr2"
|
| 487 |
+
)
|
| 488 |
+
g1_hash_no_attr = nx.weisfeiler_lehman_subgraph_hashes(G1)
|
| 489 |
+
|
| 490 |
+
assert g1_hash_edge1_node1 != g1_hash_no_attr
|
| 491 |
+
assert g1_hash_edge2_node2 != g1_hash_no_attr
|
| 492 |
+
assert g1_hash_edge1_node1 != g1_hash_edge2_node2
|
| 493 |
+
assert g1_hash_edge1_node2 != g1_hash_edge2_node2
|
| 494 |
+
assert g1_hash_edge1_node2 != g1_hash_edge1_node1
|
| 495 |
+
|
| 496 |
+
G2 = nx.relabel_nodes(G1, {u: -1 * u for u in G1.nodes()})
|
| 497 |
+
|
| 498 |
+
g2_hash_edge1_node1 = nx.weisfeiler_lehman_subgraph_hashes(
|
| 499 |
+
G2, edge_attr="edge_attr1", node_attr="node_attr1"
|
| 500 |
+
)
|
| 501 |
+
g2_hash_edge2_node2 = nx.weisfeiler_lehman_subgraph_hashes(
|
| 502 |
+
G2, edge_attr="edge_attr2", node_attr="node_attr2"
|
| 503 |
+
)
|
| 504 |
+
|
| 505 |
+
assert g1_hash_edge1_node1 == {
|
| 506 |
+
-1 * k: v for k, v in g2_hash_edge1_node1.items()
|
| 507 |
+
}
|
| 508 |
+
assert g1_hash_edge2_node2 == {
|
| 509 |
+
-1 * k: v for k, v in g2_hash_edge2_node2.items()
|
| 510 |
+
}
|
| 511 |
+
|
| 512 |
+
|
| 513 |
+
def test_iteration_depth():
|
| 514 |
+
"""
|
| 515 |
+
All nodes should have the correct number of subgraph hashes in the output when
|
| 516 |
+
using degree as initial node labels
|
| 517 |
+
Subsequent iteration depths for the same graph should be additive for each node
|
| 518 |
+
"""
|
| 519 |
+
n, r = 100, 10
|
| 520 |
+
p = 1.0 / r
|
| 521 |
+
for i in range(1, r + 1):
|
| 522 |
+
G = nx.erdos_renyi_graph(n, p * i, seed=600 + i)
|
| 523 |
+
|
| 524 |
+
depth3 = nx.weisfeiler_lehman_subgraph_hashes(G, iterations=3)
|
| 525 |
+
depth4 = nx.weisfeiler_lehman_subgraph_hashes(G, iterations=4)
|
| 526 |
+
depth5 = nx.weisfeiler_lehman_subgraph_hashes(G, iterations=5)
|
| 527 |
+
|
| 528 |
+
assert all(len(hashes) == 3 for hashes in depth3.values())
|
| 529 |
+
assert all(len(hashes) == 4 for hashes in depth4.values())
|
| 530 |
+
assert all(len(hashes) == 5 for hashes in depth5.values())
|
| 531 |
+
|
| 532 |
+
assert is_subiteration(depth3, depth4)
|
| 533 |
+
assert is_subiteration(depth4, depth5)
|
| 534 |
+
assert is_subiteration(depth3, depth5)
|
| 535 |
+
|
| 536 |
+
|
| 537 |
+
def test_iteration_depth_edge_attr():
|
| 538 |
+
"""
|
| 539 |
+
All nodes should have the correct number of subgraph hashes in the output when
|
| 540 |
+
setting initial node labels empty and using an edge attribute when aggregating
|
| 541 |
+
neighborhoods.
|
| 542 |
+
Subsequent iteration depths for the same graph should be additive for each node
|
| 543 |
+
"""
|
| 544 |
+
n, r = 100, 10
|
| 545 |
+
p = 1.0 / r
|
| 546 |
+
for i in range(1, r + 1):
|
| 547 |
+
G = nx.erdos_renyi_graph(n, p * i, seed=700 + i)
|
| 548 |
+
|
| 549 |
+
for a, b in G.edges:
|
| 550 |
+
G[a][b]["edge_attr1"] = f"{a}-{b}-1"
|
| 551 |
+
|
| 552 |
+
depth3 = nx.weisfeiler_lehman_subgraph_hashes(
|
| 553 |
+
G, edge_attr="edge_attr1", iterations=3
|
| 554 |
+
)
|
| 555 |
+
depth4 = nx.weisfeiler_lehman_subgraph_hashes(
|
| 556 |
+
G, edge_attr="edge_attr1", iterations=4
|
| 557 |
+
)
|
| 558 |
+
depth5 = nx.weisfeiler_lehman_subgraph_hashes(
|
| 559 |
+
G, edge_attr="edge_attr1", iterations=5
|
| 560 |
+
)
|
| 561 |
+
|
| 562 |
+
assert all(len(hashes) == 3 for hashes in depth3.values())
|
| 563 |
+
assert all(len(hashes) == 4 for hashes in depth4.values())
|
| 564 |
+
assert all(len(hashes) == 5 for hashes in depth5.values())
|
| 565 |
+
|
| 566 |
+
assert is_subiteration(depth3, depth4)
|
| 567 |
+
assert is_subiteration(depth4, depth5)
|
| 568 |
+
assert is_subiteration(depth3, depth5)
|
| 569 |
+
|
| 570 |
+
|
| 571 |
+
def test_iteration_depth_node_attr():
|
| 572 |
+
"""
|
| 573 |
+
All nodes should have the correct number of subgraph hashes in the output when
|
| 574 |
+
setting initial node labels to an attribute.
|
| 575 |
+
Subsequent iteration depths for the same graph should be additive for each node
|
| 576 |
+
"""
|
| 577 |
+
n, r = 100, 10
|
| 578 |
+
p = 1.0 / r
|
| 579 |
+
for i in range(1, r + 1):
|
| 580 |
+
G = nx.erdos_renyi_graph(n, p * i, seed=800 + i)
|
| 581 |
+
|
| 582 |
+
for u in G.nodes():
|
| 583 |
+
G.nodes[u]["node_attr1"] = f"{u}-1"
|
| 584 |
+
|
| 585 |
+
depth3 = nx.weisfeiler_lehman_subgraph_hashes(
|
| 586 |
+
G, node_attr="node_attr1", iterations=3
|
| 587 |
+
)
|
| 588 |
+
depth4 = nx.weisfeiler_lehman_subgraph_hashes(
|
| 589 |
+
G, node_attr="node_attr1", iterations=4
|
| 590 |
+
)
|
| 591 |
+
depth5 = nx.weisfeiler_lehman_subgraph_hashes(
|
| 592 |
+
G, node_attr="node_attr1", iterations=5
|
| 593 |
+
)
|
| 594 |
+
|
| 595 |
+
assert all(len(hashes) == 3 for hashes in depth3.values())
|
| 596 |
+
assert all(len(hashes) == 4 for hashes in depth4.values())
|
| 597 |
+
assert all(len(hashes) == 5 for hashes in depth5.values())
|
| 598 |
+
|
| 599 |
+
assert is_subiteration(depth3, depth4)
|
| 600 |
+
assert is_subiteration(depth4, depth5)
|
| 601 |
+
assert is_subiteration(depth3, depth5)
|
| 602 |
+
|
| 603 |
+
|
| 604 |
+
def test_iteration_depth_node_edge_attr():
|
| 605 |
+
"""
|
| 606 |
+
All nodes should have the correct number of subgraph hashes in the output when
|
| 607 |
+
setting initial node labels to an attribute and also using an edge attribute when
|
| 608 |
+
aggregating neighborhoods.
|
| 609 |
+
Subsequent iteration depths for the same graph should be additive for each node
|
| 610 |
+
"""
|
| 611 |
+
n, r = 100, 10
|
| 612 |
+
p = 1.0 / r
|
| 613 |
+
for i in range(1, r + 1):
|
| 614 |
+
G = nx.erdos_renyi_graph(n, p * i, seed=900 + i)
|
| 615 |
+
|
| 616 |
+
for u in G.nodes():
|
| 617 |
+
G.nodes[u]["node_attr1"] = f"{u}-1"
|
| 618 |
+
|
| 619 |
+
for a, b in G.edges:
|
| 620 |
+
G[a][b]["edge_attr1"] = f"{a}-{b}-1"
|
| 621 |
+
|
| 622 |
+
depth3 = nx.weisfeiler_lehman_subgraph_hashes(
|
| 623 |
+
G, edge_attr="edge_attr1", node_attr="node_attr1", iterations=3
|
| 624 |
+
)
|
| 625 |
+
depth4 = nx.weisfeiler_lehman_subgraph_hashes(
|
| 626 |
+
G, edge_attr="edge_attr1", node_attr="node_attr1", iterations=4
|
| 627 |
+
)
|
| 628 |
+
depth5 = nx.weisfeiler_lehman_subgraph_hashes(
|
| 629 |
+
G, edge_attr="edge_attr1", node_attr="node_attr1", iterations=5
|
| 630 |
+
)
|
| 631 |
+
|
| 632 |
+
assert all(len(hashes) == 3 for hashes in depth3.values())
|
| 633 |
+
assert all(len(hashes) == 4 for hashes in depth4.values())
|
| 634 |
+
assert all(len(hashes) == 5 for hashes in depth5.values())
|
| 635 |
+
|
| 636 |
+
assert is_subiteration(depth3, depth4)
|
| 637 |
+
assert is_subiteration(depth4, depth5)
|
| 638 |
+
assert is_subiteration(depth3, depth5)
|
| 639 |
+
|
| 640 |
+
|
| 641 |
+
def test_digest_size_subgraph_hash():
|
| 642 |
+
"""
|
| 643 |
+
The hash string lengths should be as expected for a variety of graphs and
|
| 644 |
+
digest sizes
|
| 645 |
+
"""
|
| 646 |
+
n, r = 100, 10
|
| 647 |
+
p = 1.0 / r
|
| 648 |
+
for i in range(1, r + 1):
|
| 649 |
+
G = nx.erdos_renyi_graph(n, p * i, seed=1000 + i)
|
| 650 |
+
|
| 651 |
+
digest_size16_hashes = nx.weisfeiler_lehman_subgraph_hashes(G)
|
| 652 |
+
digest_size32_hashes = nx.weisfeiler_lehman_subgraph_hashes(G, digest_size=32)
|
| 653 |
+
|
| 654 |
+
assert digest_size16_hashes != digest_size32_hashes
|
| 655 |
+
|
| 656 |
+
assert hexdigest_sizes_correct(digest_size16_hashes, 16)
|
| 657 |
+
assert hexdigest_sizes_correct(digest_size32_hashes, 32)
|
| 658 |
+
|
| 659 |
+
|
| 660 |
+
def test_initial_node_labels_subgraph_hash():
|
| 661 |
+
"""
|
| 662 |
+
Including the hashed initial label prepends an extra hash to the lists
|
| 663 |
+
"""
|
| 664 |
+
G = nx.path_graph(5)
|
| 665 |
+
nx.set_node_attributes(G, {i: int(0 < i < 4) for i in G}, "label")
|
| 666 |
+
# initial node labels:
|
| 667 |
+
# 0--1--1--1--0
|
| 668 |
+
|
| 669 |
+
without_initial_label = nx.weisfeiler_lehman_subgraph_hashes(G, node_attr="label")
|
| 670 |
+
assert all(len(v) == 3 for v in without_initial_label.values())
|
| 671 |
+
# 3 different 1 hop nhds
|
| 672 |
+
assert len({v[0] for v in without_initial_label.values()}) == 3
|
| 673 |
+
|
| 674 |
+
with_initial_label = nx.weisfeiler_lehman_subgraph_hashes(
|
| 675 |
+
G, node_attr="label", include_initial_labels=True
|
| 676 |
+
)
|
| 677 |
+
assert all(len(v) == 4 for v in with_initial_label.values())
|
| 678 |
+
# 2 different initial labels
|
| 679 |
+
assert len({v[0] for v in with_initial_label.values()}) == 2
|
| 680 |
+
|
| 681 |
+
# check hashes match otherwise
|
| 682 |
+
for u in G:
|
| 683 |
+
for a, b in zip(
|
| 684 |
+
with_initial_label[u][1:], without_initial_label[u], strict=True
|
| 685 |
+
):
|
| 686 |
+
assert a == b
|