| data_type,target,description,accession,database,pipeline_script |
| ChIP-seq,Zelda,Zelda ChIP-seq from WT staged embryos,GSE30757,GEO,scripts/01_chipseq/chipseq_pipeline.sh |
| ChIP-seq,Clamp,Clamp ChIP-seq from WT staged embryos,GSE152598,GEO,scripts/01_chipseq/chipseq_pipeline.sh |
| ChIP-seq,Histone modifications,"H3K4me3, H3K27me3, H3K27ac etc. ChIP-seq from staged embryos",GSE58935,GEO,scripts/01_chipseq/chipseq_pipeline.sh |
| ChIP-seq,Pol II,Pol II ChIP-seq from staged embryos,GSE62925,GEO,scripts/01_chipseq/chipseq_pipeline.sh |
| ChIP-seq,H4K16ac,H4K16ac ChIP-seq from WT staged embryos,GSE130335,GEO,scripts/01_chipseq/chipseq_pipeline.sh |
| ChIP-seq,GAF,GAF ChIP-seq from staged embryos,GSE152773,GEO,scripts/01_chipseq/chipseq_pipeline.sh |
| ChIP-seq,ORC2,ORC2 ChIP-seq from WT staged embryos,GSE38293,GEO,scripts/01_chipseq/chipseq_pipeline.sh |
| ATAC-seq,Chromatin accessibility,ATAC-seq from staged embryos,GSE83851,GEO,scripts/02_atacseq/atacseq_pipeline.sh |
| Hi-C,3D genome,Hi-C from staged embryos (MboI),E-MTAB-4918,ArrayExpress,scripts/04_hic/juicer_run.sh |
| RNA-seq,Transcriptome,Single-embryo RNA-seq during ZGA,GSE154502,GEO,scripts/05_rnaseq/rnaseq_pipeline.sh |
|
|
