| { |
| "_meta": { |
| "purpose": "Label space of each dataset view and how well the corpus covers each label. coverage is one of: covered (histology or grading content), partial (taxonomy, grade or genetics only, no morphology text), uncovered (no free source read).", |
| "recorded": "2026-10-01", |
| "label_sources": "TCGA: catalog slides table. BRACS: bracs-slide-labels.csv on the thesis drive. EBR-coarse30: MahmoodLab Patho-Bench ebrains/diagnosis config (30 classes, labels only, CC BY-NC-ND 4.0, not redistributed here beyond the class names)." |
| }, |
| "datasets": { |
| "tcga-nsclc": { |
| "labels": { |
| "LUAD": { |
| "entity": "lung:LUAD", |
| "coverage": "covered" |
| }, |
| "LUSC": { |
| "entity": "lung:LUSC", |
| "coverage": "covered" |
| } |
| } |
| }, |
| "bracs-fine": { |
| "labels": { |
| "N": { |
| "entity": "breast:N", |
| "coverage": "covered" |
| }, |
| "PB": { |
| "entity": "breast:PB", |
| "coverage": "covered" |
| }, |
| "UDH": { |
| "entity": "breast:UDH", |
| "coverage": "covered" |
| }, |
| "FEA": { |
| "entity": "breast:FEA", |
| "coverage": "covered" |
| }, |
| "ADH": { |
| "entity": "breast:ADH", |
| "coverage": "covered" |
| }, |
| "DCIS": { |
| "entity": "breast:DCIS", |
| "coverage": "covered" |
| }, |
| "IC": { |
| "entity": "breast:IC", |
| "coverage": "covered" |
| } |
| } |
| }, |
| "bracs-coarse": { |
| "labels": { |
| "benign": { |
| "entity": "breast:group-benign", |
| "members": [ |
| "N", |
| "PB", |
| "UDH" |
| ], |
| "coverage": "covered" |
| }, |
| "atypical": { |
| "entity": "breast:group-atypical", |
| "members": [ |
| "FEA", |
| "ADH" |
| ], |
| "coverage": "covered" |
| }, |
| "malignant": { |
| "entity": "breast:group-malignant", |
| "members": [ |
| "DCIS", |
| "IC" |
| ], |
| "coverage": "covered" |
| } |
| } |
| }, |
| "ebr-coarse30": { |
| "labels": { |
| "Glioblastoma IDH-wildtype": { |
| "entity": "cns:gbm-idh-wt", |
| "coverage": "covered" |
| }, |
| "Gliosarcoma": { |
| "entity": "cns:gliosarcoma", |
| "coverage": "partial" |
| }, |
| "Transitional meningioma": { |
| "entity": "cns:meningioma-transitional", |
| "coverage": "partial" |
| }, |
| "Anaplastic meningioma": { |
| "entity": "cns:meningioma-anaplastic", |
| "coverage": "partial" |
| }, |
| "Pituitary adenoma": { |
| "entity": "cns:pituitary-adenoma", |
| "coverage": "partial" |
| }, |
| "Oligodendroglioma IDH-mutant and 1p/19q codeleted": { |
| "entity": "cns:oligodendroglioma", |
| "coverage": "covered" |
| }, |
| "Haemangioma": { |
| "entity": "cns:haemangioma", |
| "coverage": "partial" |
| }, |
| "Ganglioglioma": { |
| "entity": "cns:ganglioglioma", |
| "coverage": "partial" |
| }, |
| "Pilocytic astrocytoma": { |
| "entity": "cns:pilocytic-astrocytoma", |
| "coverage": "partial" |
| }, |
| "Schwannoma": { |
| "entity": "cns:schwannoma", |
| "coverage": "partial" |
| }, |
| "Anaplastic oligodendroglioma IDH-mutant and 1p/19q codeleted": { |
| "entity": "cns:oligodendroglioma", |
| "coverage": "covered", |
| "note": "legacy name; grade 3 of the same type in CNS5" |
| }, |
| "Fibrous meningioma": { |
| "entity": "cns:meningioma-fibrous", |
| "coverage": "partial" |
| }, |
| "Anaplastic astrocytoma IDH-wildtype": { |
| "entity": "cns:anaplastic-astrocytoma-idh-wt-legacy", |
| "coverage": "partial", |
| "note": "legacy name; under CNS5 an IDH-wildtype astrocytic tumour with a GBM molecular criterion is glioblastoma, see the naming passage" |
| }, |
| "Angiomatous meningioma": { |
| "entity": "cns:meningioma-angiomatous", |
| "coverage": "partial" |
| }, |
| "Haemangioblastoma": { |
| "entity": "cns:haemangioblastoma", |
| "coverage": "partial" |
| }, |
| "Adamantinomatous craniopharyngioma": { |
| "entity": "cns:craniopharyngioma-adamantinomatous", |
| "coverage": "partial" |
| }, |
| "Anaplastic astrocytoma IDH-mutant": { |
| "entity": "cns:astrocytoma-idh-mutant", |
| "coverage": "covered", |
| "note": "legacy name; grade 3 of astrocytoma IDH-mutant in CNS5" |
| }, |
| "Glioblastoma IDH-mutant": { |
| "entity": "cns:astrocytoma-idh-mutant", |
| "coverage": "covered", |
| "note": "legacy name; grade 4 of astrocytoma IDH-mutant in CNS5" |
| }, |
| "Diffuse astrocytoma IDH-mutant": { |
| "entity": "cns:astrocytoma-idh-mutant", |
| "coverage": "covered", |
| "note": "grade 2" |
| }, |
| "Ependymoma": { |
| "entity": "cns:ependymoma", |
| "coverage": "partial" |
| }, |
| "Anaplastic ependymoma": { |
| "entity": "cns:ependymoma", |
| "coverage": "partial", |
| "note": "legacy name" |
| }, |
| "Atypical meningioma": { |
| "entity": "cns:meningioma-atypical", |
| "coverage": "partial" |
| }, |
| "Metastatic tumours": { |
| "entity": "cns:metastasis", |
| "coverage": "partial" |
| }, |
| "Meningothelial meningioma": { |
| "entity": "cns:meningioma-meningothelial", |
| "coverage": "partial" |
| }, |
| "Langerhans cell histiocytosis": { |
| "entity": "cns:lch", |
| "coverage": "partial" |
| }, |
| "Diffuse large B-cell lymphoma of the CNS": { |
| "entity": "cns:cns-dlbcl", |
| "coverage": "partial" |
| }, |
| "Secretory meningioma": { |
| "entity": "cns:meningioma-secretory", |
| "coverage": "partial" |
| }, |
| "Haemangiopericytoma": { |
| "entity": "cns:haemangiopericytoma", |
| "coverage": "partial" |
| }, |
| "Lipoma": { |
| "entity": "cns:lipoma", |
| "coverage": "partial" |
| }, |
| "Medulloblastoma non-WNT/non-SHH": { |
| "entity": "cns:medulloblastoma", |
| "coverage": "partial" |
| } |
| } |
| } |
| } |
| } |
|
|
