thesis-data / knowledge /sources.json
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{
"_meta": {
"purpose": "Registry of every source a corpus passage may cite. A passage whose source_id is not listed here fails validation.",
"reuse_rule": "CC BY sources may be paraphrased or quoted with attribution. Sources without a confirmed open licence are paraphrased only, never copied verbatim.",
"recorded": "2026-10-01",
"origin_of_source_choices": "Documents/plans/_archive/2026-09-30/2026-09-28-full-pipeline-implementation-plan/requirements/{who-iccr,bracs-knowledge,ebrains-cns-knowledge}-source-search.md",
"tiers": {
"T1": "guideline, society or government source",
"T2": "peer-reviewed journal article or review (journal, year, article type recorded)",
"T3": "Wikipedia, Libre Pathology or other community text",
"T4": "anything else"
},
"snapshot_note": "snapshot paths are repo-relative under data/datasets/knowledge-src (not tracked in git); sha256 recorded per source.",
"merged": "2026-10-01 v2 merge (base + final-ebr + tcga-bracs); tier and legitimacy fields added per source"
},
"sources": {
"iccr-lung": {
"citation": "International Collaboration on Cancer Reporting. Lung Cancer Histopathology Reporting Guide, 4th ed., v4.0, April 2023. ISBN 978-1-922324-34-4.",
"url": "https://www.iccr-cancer.org/wp-content/uploads/2023/06/ICCR-Lung-4th-ed-v4.0-hyperlink.pdf",
"license": "no explicit reuse terms found; paraphrase only",
"verification": "downloaded and read in the earlier source search; synoptic checklist, taxonomy only, no narrative criteria",
"tier": "T1",
"tier_label": "Guideline / reporting standard",
"legitimacy": "International Collaboration on Cancer Reporting (ICCR), a consortium of pathology colleges and societies; expert-panel reporting datasets used as national standards; synoptic checklist developed from the WHO 2021 taxonomy; not a journal article, no reuse licence found."
},
"pmc7698816": {
"citation": "Weng CF et al. New International Association for the Study of Lung Cancer (IASLC) Pathology Committee Grading System for the Prognostic Outcome of Advanced Lung Adenocarcinoma. Cancers 2020;12(11):3426. doi:10.3390/cancers12113426. PMC7698816",
"url": "https://pmc.ncbi.nlm.nih.gov/articles/PMC7698816/",
"license": "CC BY 4.0 (confirmed from the Europe PMC licence element and the MDPI statement; see snapshots/pmc7698816-licence-evidence.txt)",
"verification": "carried over from the existing lung criteria file | 2026-10-01 merge: Replaces the wrong author (Moreira) in APS-WSI/knowledge/sources.json. Proposal only; APS-WSI is not edited.",
"snapshot": "data/datasets/knowledge-src/tcga-bracs/snapshots/pmc7698816.txt",
"tier": "T2",
"tier_label": "Peer-reviewed journal article (retrospective cohort study)",
"legitimacy": "Cancers (2020). Europe PMC publication types: research-article, Journal Article. Indexed in PubMed Central / Europe PMC; open-access licence as recorded.",
"journal": "Cancers",
"year": 2020,
"article_type": "retrospective cohort study"
},
"pmc12308192": {
"citation": "Patel S, Adiga DS. Evaluation of TTF-1, Napsin A, p40, and p63 in the Subtyping of Non-Small Cell Lung Carcinoma: A Cross-Sectional Study from India. Iran J Pathol 2025. PMC12308192.",
"url": "https://pmc.ncbi.nlm.nih.gov/articles/PMC12308192/",
"license": "CC BY 4.0 (confirmed; see snapshots/pmc12308192-licence-evidence.txt)",
"verification": "carried over from the existing lung criteria file; single-cohort percentages, a data point and not a consensus | 2026-10-01 merge: Licence confirmation only.",
"snapshot": "data/datasets/knowledge-src/tcga-bracs/snapshots/pmc12308192.txt",
"tier": "T2",
"tier_label": "Peer-reviewed journal article (cross-sectional study (single centre, India))",
"legitimacy": "Iranian journal of pathology (2025). Europe PMC publication types: research-article, Journal Article. Indexed in PubMed Central / Europe PMC; open-access licence as recorded.",
"journal": "Iranian journal of pathology",
"year": 2025,
"article_type": "cross-sectional study (single centre, India)"
},
"bracs-paper": {
"citation": "Brancati N et al. BRACS: A Dataset for BReAst Carcinoma Subtyping in H&E Histology Images. arXiv:2111.04740 (2021); Database 2022, baac093.",
"url": "https://arxiv.org/abs/2111.04740",
"license": "Two versions, two licences. arXiv version (arXiv:2111.04740): arXiv non-exclusive distribution licence (abstract page links arxiv.org/licenses/nonexclusive-distrib/1.0/). Journal version (Database 2022, baac093, doi 10.1093/database/baac093, PMC9575967): CC BY-NC 4.0. Non-commercial research use; paraphrase with attribution.",
"verification": "full text fetched and read 2026-10-01 (section 'Subtype annotations')",
"tier": "T2",
"tier_label": "Dataset paper (journal + preprint)",
"legitimacy": "BRACS dataset paper: published peer-reviewed in Database (Oxford) 2022 baac093; the cited text is the arXiv:2111.04740 preprint of it; the dataset itself is the source of the BRACS labels used in this thesis; the \"expert definition\" statements are the authors' annotation protocol, not a guideline."
},
"pmc8833401": {
"citation": "Khoury T. Preneoplastic Low-Risk Mammary Ductal Lesions (Atypical Ductal Hyperplasia and Ductal Carcinoma In Situ Spectrum): Current Status and Future Directions. Cancers (Basel) 2022;14(3):507. doi:10.3390/cancers14030507. PMC8833401.",
"url": "https://pmc.ncbi.nlm.nih.gov/articles/PMC8833401/",
"license": "CC BY 4.0 (licence statement read on the page 2026-10-01)",
"verification": "full text fetched and read 2026-10-01",
"snapshot": "data/datasets/knowledge-src/tcga-bracs/snapshots/pmc8833401.txt",
"tier": "T2",
"tier_label": "Peer-reviewed journal article (review)",
"legitimacy": "Cancers (2022). Europe PMC publication types: review-article, Review, Journal Article. Indexed in PubMed Central / Europe PMC; open-access licence as recorded.",
"journal": "Cancers",
"year": 2022,
"article_type": "review"
},
"pmc10216527": {
"citation": "Martin KC, Ma C, Yip S. From Theory to Practice: Implementing the WHO 2021 Classification of Adult Diffuse Gliomas in Neuropathology Diagnosis. Brain Sci 2023;13(5):817. doi:10.3390/brainsci13050817. PMC10216527.",
"url": "https://pmc.ncbi.nlm.nih.gov/articles/PMC10216527/",
"license": "CC BY 4.0 (MDPI open access licence statement read on the page 2026-10-01)",
"verification": "full text fetched and read 2026-10-01",
"tier": "T2",
"tier_label": "Peer-reviewed journal article (narrative review)",
"legitimacy": "Brain sciences (2023). Europe PMC publication types: review-article, Review, Journal Article. Indexed in PubMed Central / Europe PMC; open-access licence as recorded.",
"journal": "Brain sciences",
"year": 2023,
"article_type": "narrative review"
},
"pmc9427889": {
"citation": "Torp SH, Solheim O, Skjulsvik AJ. The WHO 2021 Classification of Central Nervous System tumours: a practical update on what neurosurgeons need to know, a minireview. Acta Neurochir (Wien) 2022;164(9):2453-2464. doi:10.1007/s00701-022-05301-y. PMC9427889.",
"url": "https://pmc.ncbi.nlm.nih.gov/articles/PMC9427889/",
"license": "CC BY 4.0 (licence statement read on the page 2026-10-01)",
"verification": "full text fetched and read 2026-10-01, including its tables",
"tier": "T2",
"tier_label": "Peer-reviewed journal article (minireview)",
"legitimacy": "Acta neurochirurgica (2022). Europe PMC publication types: Research Support, Non-U.S. Gov't, review-article, Review, Journal Article. Indexed in PubMed Central / Europe PMC; open-access licence as recorded. Journal: established neurosurgery journal.",
"journal": "Acta neurochirurgica",
"year": 2022,
"article_type": "minireview"
},
"librepath-anaplastic-astrocytoma": {
"citation": "Libre Pathology, page 'Anaplastic astrocytoma', revision 48773 dated 2018-03-19",
"url": "https://librepathology.org/w/index.php?title=Anaplastic_astrocytoma&oldid=48773",
"license": "CC BY-NC-SA 3.0 (Copyrights page says NC SA 3.0)",
"verification": "raw wikitext fetched via action=raw on 2026-10-01 and read; snapshot is the raw wikitext; page may be older than current clinical practice; use: paraphrase only, non-commercial (Libre_Pathology:Copyrights says users are generally not allowed commercial use)",
"snapshot": "data/datasets/knowledge-src/final-ebr/snapshots/librepath-anaplastic-astrocytoma.txt",
"sha256": "8cad435429a6e508b422c5a9af68e66684d9fe06143c4a7f0bfbb1b68ea51ae8",
"license_note": "Commercial use generally not allowed (Libre Pathology:Copyrights); footer image alt text on one page says NC-SA 4.0, version inconsistent; paraphrase only, non-commercial use.",
"tier": "T3",
"tier_label": "Libre Pathology (community wiki)",
"legitimacy": "Libre Pathology: volunteer-edited community wiki for pathologists and trainees, not peer-reviewed, no named review board; revision 2018; widely used as a quick reference; NC-SA licence, paraphrase only. Revision predates the WHO 2021 classification, so terms and grades may be outdated."
},
"librepath-astrocytoma": {
"citation": "Libre Pathology, page 'Astrocytoma', revision 52177 dated 2022-10-17",
"url": "https://librepathology.org/w/index.php?title=Astrocytoma&oldid=52177",
"license": "CC BY-NC-SA 3.0 (Copyrights page says NC SA 3.0)",
"verification": "raw wikitext fetched via action=raw on 2026-10-01 and read; snapshot is the raw wikitext; page may be older than current clinical practice; use: paraphrase only, non-commercial (Libre_Pathology:Copyrights says users are generally not allowed commercial use)",
"snapshot": "data/datasets/knowledge-src/final-ebr/snapshots/librepath-astrocytoma.txt",
"sha256": "9da53245f48f82ca2515eda8f0d8b0c0699260c677a9951e86e75dbe9de15ea7",
"license_note": "Commercial use generally not allowed (Libre Pathology:Copyrights); footer image alt text on one page says NC-SA 4.0, version inconsistent; paraphrase only, non-commercial use.",
"tier": "T3",
"tier_label": "Libre Pathology (community wiki)",
"legitimacy": "Libre Pathology: volunteer-edited community wiki for pathologists and trainees, not peer-reviewed, no named review board; revision 2022; widely used as a quick reference; NC-SA licence, paraphrase only."
},
"librepath-brain-metastasis": {
"citation": "Libre Pathology, page 'Brain metastasis', revision 52929 dated 2024-04-26",
"url": "https://librepathology.org/w/index.php?title=Brain_metastasis&oldid=52929",
"license": "CC BY-NC-SA 3.0 (Copyrights page says NC SA 3.0)",
"verification": "raw wikitext fetched via action=raw on 2026-10-01 and read; snapshot is the raw wikitext; page may be older than current clinical practice; use: paraphrase only, non-commercial (Libre_Pathology:Copyrights says users are generally not allowed commercial use)",
"snapshot": "data/datasets/knowledge-src/final-ebr/snapshots/librepath-brain-metastasis.txt",
"sha256": "668c1a825ba0ff55fc7b9d7d91e779e32ec00b8ca7c0ed9500b0d648e183a07d",
"license_note": "Commercial use generally not allowed (Libre Pathology:Copyrights); footer image alt text on one page says NC-SA 4.0, version inconsistent; paraphrase only, non-commercial use.",
"tier": "T3",
"tier_label": "Libre Pathology (community wiki)",
"legitimacy": "Libre Pathology: volunteer-edited community wiki for pathologists and trainees, not peer-reviewed, no named review board; revision 2024; widely used as a quick reference; NC-SA licence, paraphrase only."
},
"librepath-craniopharyngioma": {
"citation": "Libre Pathology, page 'Craniopharyngioma', revision 50390 dated 2019-10-11",
"url": "https://librepathology.org/w/index.php?title=Craniopharyngioma&oldid=50390",
"license": "CC BY-NC-SA 3.0 (Copyrights page says NC SA 3.0)",
"verification": "raw wikitext fetched via action=raw on 2026-10-01 and read; snapshot is the raw wikitext; page may be older than current clinical practice; use: paraphrase only, non-commercial (Libre_Pathology:Copyrights says users are generally not allowed commercial use)",
"snapshot": "data/datasets/knowledge-src/final-ebr/snapshots/librepath-craniopharyngioma.txt",
"sha256": "6145b7a697d72d6e49ce248d8901ea77ed391d4f85b7a9ae34eeb264be841690",
"license_note": "Commercial use generally not allowed (Libre Pathology:Copyrights); footer image alt text on one page says NC-SA 4.0, version inconsistent; paraphrase only, non-commercial use.",
"tier": "T3",
"tier_label": "Libre Pathology (community wiki)",
"legitimacy": "Libre Pathology: volunteer-edited community wiki for pathologists and trainees, not peer-reviewed, no named review board; revision 2019; widely used as a quick reference; NC-SA licence, paraphrase only. Revision predates the WHO 2021 classification, so terms and grades may be outdated."
},
"librepath-ependymoma": {
"citation": "Libre Pathology, page 'Ependymoma', revision 52127 dated 2022-09-19",
"url": "https://librepathology.org/w/index.php?title=Ependymoma&oldid=52127",
"license": "CC BY-NC-SA 3.0 (Copyrights page says NC SA 3.0)",
"verification": "raw wikitext fetched via action=raw on 2026-10-01 and read; snapshot is the raw wikitext; page may be older than current clinical practice; use: paraphrase only, non-commercial (Libre_Pathology:Copyrights says users are generally not allowed commercial use)",
"snapshot": "data/datasets/knowledge-src/final-ebr/snapshots/librepath-ependymoma.txt",
"sha256": "c9c1386f9e143d5f9deb4b0b6aed0d835e27779b537333fec1fff20b0425b204",
"license_note": "Commercial use generally not allowed (Libre Pathology:Copyrights); footer image alt text on one page says NC-SA 4.0, version inconsistent; paraphrase only, non-commercial use.",
"tier": "T3",
"tier_label": "Libre Pathology (community wiki)",
"legitimacy": "Libre Pathology: volunteer-edited community wiki for pathologists and trainees, not peer-reviewed, no named review board; revision 2022; widely used as a quick reference; NC-SA licence, paraphrase only."
},
"librepath-ganglioglioma": {
"citation": "Libre Pathology, page 'Ganglioglioma', revision 51932 dated 2022-04-04",
"url": "https://librepathology.org/w/index.php?title=Ganglioglioma&oldid=51932",
"license": "CC BY-NC-SA 3.0 (Copyrights page says NC SA 3.0)",
"verification": "raw wikitext fetched via action=raw on 2026-10-01 and read; snapshot is the raw wikitext; page may be older than current clinical practice; use: paraphrase only, non-commercial (Libre_Pathology:Copyrights says users are generally not allowed commercial use)",
"snapshot": "data/datasets/knowledge-src/final-ebr/snapshots/librepath-ganglioglioma.txt",
"sha256": "aaa1917ffeb938e4edaed76e3b29b82920e3c674292bfa395149dc71054c8882",
"license_note": "Commercial use generally not allowed (Libre Pathology:Copyrights); footer image alt text on one page says NC-SA 4.0, version inconsistent; paraphrase only, non-commercial use.",
"tier": "T3",
"tier_label": "Libre Pathology (community wiki)",
"legitimacy": "Libre Pathology: volunteer-edited community wiki for pathologists and trainees, not peer-reviewed, no named review board; revision 2022; widely used as a quick reference; NC-SA licence, paraphrase only."
},
"librepath-hemangioblastoma": {
"citation": "Libre Pathology, page 'Hemangioblastoma', revision 53495 dated 2025-03-19",
"url": "https://librepathology.org/w/index.php?title=Hemangioblastoma&oldid=53495",
"license": "CC BY-NC-SA 3.0 (Copyrights page says NC SA 3.0)",
"verification": "raw wikitext fetched via action=raw on 2026-10-01 and read; snapshot is the raw wikitext; page may be older than current clinical practice; use: paraphrase only, non-commercial (Libre_Pathology:Copyrights says users are generally not allowed commercial use)",
"snapshot": "data/datasets/knowledge-src/final-ebr/snapshots/librepath-hemangioblastoma.txt",
"sha256": "8fba6dc1764a8271980eef58d64fc446d82ee4ef5a45c644fef1378d0a1cbf76",
"license_note": "Commercial use generally not allowed (Libre Pathology:Copyrights); footer image alt text on one page says NC-SA 4.0, version inconsistent; paraphrase only, non-commercial use.",
"tier": "T3",
"tier_label": "Libre Pathology (community wiki)",
"legitimacy": "Libre Pathology: volunteer-edited community wiki for pathologists and trainees, not peer-reviewed, no named review board; revision 2025; widely used as a quick reference; NC-SA licence, paraphrase only."
},
"librepath-hemangioma": {
"citation": "Libre Pathology, page 'Hemangioma', revision 52047 dated 2022-05-16",
"url": "https://librepathology.org/w/index.php?title=Hemangioma&oldid=52047",
"license": "CC BY-NC-SA 3.0 (Copyrights page says NC SA 3.0)",
"verification": "raw wikitext fetched via action=raw on 2026-10-01 and read; snapshot is the raw wikitext; page may be older than current clinical practice; use: paraphrase only, non-commercial (Libre_Pathology:Copyrights says users are generally not allowed commercial use)",
"snapshot": "data/datasets/knowledge-src/final-ebr/snapshots/librepath-hemangioma.txt",
"sha256": "2792a5aff6cd89b03a6db36933f383acbc539e50cdbf6867e308107db7010355",
"license_note": "Commercial use generally not allowed (Libre Pathology:Copyrights); footer image alt text on one page says NC-SA 4.0, version inconsistent; paraphrase only, non-commercial use.",
"tier": "T3",
"tier_label": "Libre Pathology (community wiki)",
"legitimacy": "Libre Pathology: volunteer-edited community wiki for pathologists and trainees, not peer-reviewed, no named review board; revision 2022; widely used as a quick reference; NC-SA licence, paraphrase only."
},
"librepath-lch": {
"citation": "Libre Pathology, page 'Langerhans cell histiocytosis', revision 43918 dated 2016-04-25",
"url": "https://librepathology.org/w/index.php?title=Langerhans_cell_histiocytosis&oldid=43918",
"license": "CC BY-NC-SA 3.0 (Copyrights page says NC SA 3.0)",
"verification": "raw wikitext fetched via action=raw on 2026-10-01 and read; snapshot is the raw wikitext; page may be older than current clinical practice; use: paraphrase only, non-commercial (Libre_Pathology:Copyrights says users are generally not allowed commercial use)",
"snapshot": "data/datasets/knowledge-src/final-ebr/snapshots/librepath-lch.txt",
"sha256": "e60dda5397efaaf6afef135f35e40e5c1ff50ace4fe9a8fcda069f9a366f7b82",
"license_note": "Commercial use generally not allowed (Libre Pathology:Copyrights); footer image alt text on one page says NC-SA 4.0, version inconsistent; paraphrase only, non-commercial use.",
"tier": "T3",
"tier_label": "Libre Pathology (community wiki)",
"legitimacy": "Libre Pathology: volunteer-edited community wiki for pathologists and trainees, not peer-reviewed, no named review board; revision 2016; widely used as a quick reference; NC-SA licence, paraphrase only. Revision predates the WHO 2021 classification, so terms and grades may be outdated."
},
"librepath-lipoma": {
"citation": "Libre Pathology, page 'Lipoma', revision 49652 dated 2018-12-10",
"url": "https://librepathology.org/w/index.php?title=Lipoma&oldid=49652",
"license": "CC BY-NC-SA 3.0 (Copyrights page says NC SA 3.0)",
"verification": "raw wikitext fetched via action=raw on 2026-10-01 and read; snapshot is the raw wikitext; page may be older than current clinical practice; use: paraphrase only, non-commercial (Libre_Pathology:Copyrights says users are generally not allowed commercial use)",
"snapshot": "data/datasets/knowledge-src/final-ebr/snapshots/librepath-lipoma.txt",
"sha256": "fe7428f4e3c53fde7653e0396c2bd7df09511148ff951d92517e8d87cba1d772",
"license_note": "Commercial use generally not allowed (Libre Pathology:Copyrights); footer image alt text on one page says NC-SA 4.0, version inconsistent; paraphrase only, non-commercial use.",
"tier": "T3",
"tier_label": "Libre Pathology (community wiki)",
"legitimacy": "Libre Pathology: volunteer-edited community wiki for pathologists and trainees, not peer-reviewed, no named review board; revision 2018; widely used as a quick reference; NC-SA licence, paraphrase only. Revision predates the WHO 2021 classification, so terms and grades may be outdated."
},
"librepath-medulloblastoma": {
"citation": "Libre Pathology, page 'Medulloblastoma', revision 50503 dated 2019-11-20",
"url": "https://librepathology.org/w/index.php?title=Medulloblastoma&oldid=50503",
"license": "CC BY-NC-SA 3.0 (Copyrights page says NC SA 3.0)",
"verification": "raw wikitext fetched via action=raw on 2026-10-01 and read; snapshot is the raw wikitext; page may be older than current clinical practice; use: paraphrase only, non-commercial (Libre_Pathology:Copyrights says users are generally not allowed commercial use)",
"snapshot": "data/datasets/knowledge-src/final-ebr/snapshots/librepath-medulloblastoma.txt",
"sha256": "835f5391e93315fcb5b89638c2c881aba88f63d22870e89ee8972f25a82e37cd",
"license_note": "Commercial use generally not allowed (Libre Pathology:Copyrights); footer image alt text on one page says NC-SA 4.0, version inconsistent; paraphrase only, non-commercial use.",
"tier": "T3",
"tier_label": "Libre Pathology (community wiki)",
"legitimacy": "Libre Pathology: volunteer-edited community wiki for pathologists and trainees, not peer-reviewed, no named review board; revision 2019; widely used as a quick reference; NC-SA licence, paraphrase only. Revision predates the WHO 2021 classification, so terms and grades may be outdated."
},
"librepath-meningioma": {
"citation": "Libre Pathology, page 'Meningioma', revision 52129 dated 2022-09-19",
"url": "https://librepathology.org/w/index.php?title=Meningioma&oldid=52129",
"license": "CC BY-NC-SA 3.0 (Copyrights page says NC SA 3.0)",
"verification": "raw wikitext fetched via action=raw on 2026-10-01 and read; snapshot is the raw wikitext; page may be older than current clinical practice; use: paraphrase only, non-commercial (Libre_Pathology:Copyrights says users are generally not allowed commercial use)",
"snapshot": "data/datasets/knowledge-src/final-ebr/snapshots/librepath-meningioma.txt",
"sha256": "f6c29931a632fb67a8fdf92fe4194196ca595c35018c63a59c0d4a2e1fae3aaa",
"license_note": "Commercial use generally not allowed (Libre Pathology:Copyrights); footer image alt text on one page says NC-SA 4.0, version inconsistent; paraphrase only, non-commercial use.",
"tier": "T3",
"tier_label": "Libre Pathology (community wiki)",
"legitimacy": "Libre Pathology: volunteer-edited community wiki for pathologists and trainees, not peer-reviewed, no named review board; revision 2022; widely used as a quick reference; NC-SA licence, paraphrase only."
},
"librepath-neuropath-tumours": {
"citation": "Libre Pathology, page 'Neuropathology tumours', revision 52004 dated 2022-04-14",
"url": "https://librepathology.org/w/index.php?title=Neuropathology_tumours&oldid=52004",
"license": "CC BY-NC-SA 3.0 (Copyrights page says NC SA 3.0)",
"verification": "raw wikitext fetched via action=raw on 2026-10-01 and read; snapshot is the raw wikitext; page may be older than current clinical practice; use: paraphrase only, non-commercial (Libre_Pathology:Copyrights says users are generally not allowed commercial use)",
"snapshot": "data/datasets/knowledge-src/final-ebr/snapshots/librepath-neuropath-tumours.txt",
"sha256": "1ae786132b80fb3e6b78b83b76314093965f84d5e5c1d3f49947f461378e349b",
"license_note": "Commercial use generally not allowed (Libre Pathology:Copyrights); footer image alt text on one page says NC-SA 4.0, version inconsistent; paraphrase only, non-commercial use.",
"tier": "T3",
"tier_label": "Libre Pathology (community wiki)",
"legitimacy": "Libre Pathology: volunteer-edited community wiki for pathologists and trainees, not peer-reviewed, no named review board; revision 2022; widely used as a quick reference; NC-SA licence, paraphrase only."
},
"librepath-pilocytic": {
"citation": "Libre Pathology, page 'Pilocytic astrocytoma', revision 47235 dated 2017-04-10",
"url": "https://librepathology.org/w/index.php?title=Pilocytic_astrocytoma&oldid=47235",
"license": "CC BY-NC-SA 3.0 (Copyrights page says NC SA 3.0)",
"verification": "raw wikitext fetched via action=raw on 2026-10-01 and read; snapshot is the raw wikitext; page may be older than current clinical practice; use: paraphrase only, non-commercial (Libre_Pathology:Copyrights says users are generally not allowed commercial use)",
"snapshot": "data/datasets/knowledge-src/final-ebr/snapshots/librepath-pilocytic.txt",
"sha256": "14c25017df408a67f9e5c9f80f5f93d7a900a10653bf0dd2c8b970d11b741d12",
"license_note": "Commercial use generally not allowed (Libre Pathology:Copyrights); footer image alt text on one page says NC-SA 4.0, version inconsistent; paraphrase only, non-commercial use.",
"tier": "T3",
"tier_label": "Libre Pathology (community wiki)",
"legitimacy": "Libre Pathology: volunteer-edited community wiki for pathologists and trainees, not peer-reviewed, no named review board; revision 2017; widely used as a quick reference; NC-SA licence, paraphrase only. Revision predates the WHO 2021 classification, so terms and grades may be outdated."
},
"librepath-pituitary-gland": {
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"license_note": "Commercial use generally not allowed (Libre Pathology:Copyrights); footer image alt text on one page says NC-SA 4.0, version inconsistent; paraphrase only, non-commercial use.",
"tier": "T3",
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},
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"citation": "Wei S et al. Isocitrate Dehydrogenase-Mutant Astrocytomas: Risk Stratification and Therapeutic Advance. MedComm 2026. PMC13042621. doi:10.1002/mco2.70686",
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"license": "CC BY 4.0 (read from the Europe PMC full-text XML licence element, 2026-10-01)",
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"citation": "Guo X et al. Histological and molecular glioblastoma, IDH-wildtype: a real-world landscape using the 2021 WHO classification of central nervous system tumors. Front Oncol 2023. PMC10358772. doi:10.3389/fonc.2023.1200815",
"url": "https://pmc.ncbi.nlm.nih.gov/articles/PMC10358772/",
"license": "CC BY 4.0 (read from the Europe PMC full-text XML licence element, 2026-10-01)",
"verification": "full text fetched via Europe PMC REST fullTextXML on 2026-10-01 and read; snapshot is the extracted text; added in the depth pass",
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"journal": "Frontiers in oncology",
"year": 2023,
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"citation": "Keric N et al. Treatment outcome of IDH1/2 wildtype CNS WHO grade 4 glioma histologically diagnosed as WHO grade II or III astrocytomas. J Neurooncol 2024. PMC10978634. doi:10.1007/s11060-024-04585-7",
"url": "https://pmc.ncbi.nlm.nih.gov/articles/PMC10978634/",
"license": "CC BY 4.0 (read from the Europe PMC full-text XML licence element, 2026-10-01)",
"verification": "full text fetched via Europe PMC REST fullTextXML on 2026-10-01 and read; snapshot is the extracted text; added in the depth pass",
"snapshot": "data/datasets/knowledge-src/final-ebr/snapshots/pmc10978634.txt",
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"tier": "T2",
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"legitimacy": "Journal of neuro-oncology (2024). Europe PMC publication types: research-article, Multicenter Study, Journal Article. Indexed in PubMed Central / Europe PMC; open-access licence as recorded. Journal: established neuro-oncology journal.",
"journal": "Journal of neuro-oncology",
"year": 2024,
"article_type": "multicentre retrospective study"
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"citation": "Franceschi E et al. Adult Medulloblastoma: Updates on Current Management and Future Perspectives. Cancers 2022. PMC9367316. doi:10.3390/cancers14153708",
"url": "https://pmc.ncbi.nlm.nih.gov/articles/PMC9367316/",
"license": "CC BY 4.0 (read from the Europe PMC full-text XML licence element, 2026-10-01)",
"verification": "full text fetched via Europe PMC REST fullTextXML on 2026-10-01 and read; snapshot is the extracted text; added in the depth pass",
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"journal": "Cancers",
"year": 2022,
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"citation": "McKinney RA, Wang G. Langerhans Cell Histiocytosis and Other Histiocytic Lesions. Head Neck Pathol 2025. PMC11861498. doi:10.1007/s12105-025-01766-2",
"url": "https://pmc.ncbi.nlm.nih.gov/articles/PMC11861498/",
"license": "CC BY 4.0 (read from the Europe PMC full-text XML licence element, 2026-10-01)",
"verification": "full text fetched via Europe PMC REST fullTextXML on 2026-10-01 and read; snapshot is the extracted text; added in the depth pass",
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"journal": "Head and neck pathology",
"year": 2025,
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"citation": "Calero Martinez S et al. Confocal Laser Endomicroscopy in Brain Metastasis Surgery: A Systematic Review of the Evidence at the Tumor-Brain Interface. J Clin Med 2026. PMC13301885",
"url": "https://pmc.ncbi.nlm.nih.gov/articles/PMC13301885/",
"license": "CC BY 4.0 (read from the Europe PMC full-text XML licence element, 2026-10-01)",
"verification": "full text fetched via Europe PMC REST fullTextXML on 2026-10-01 and read; snapshot is the extracted text; added in the depth pass",
"snapshot": "data/datasets/knowledge-src/final-ebr/snapshots/pmc13301885.txt",
"sha256": "235eafbe60ef287c674184d2951f2ac23571bcc08090fcfeb61c5224263856cb",
"tier": "T2",
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"journal": "Journal of clinical medicine",
"year": 2026,
"article_type": "systematic review"
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"citation": "Yetisgin E et al. Diagnostic Pitfalls of Oligodendroglioma-like Morphology: Integrated Reappraisal of 23 Non-Oligodendroglial Central Nervous System Tumors. Diagnostics 2026. PMC13564585. doi:10.3390/diagnostics16172723",
"url": "https://pmc.ncbi.nlm.nih.gov/articles/PMC13564585/",
"license": "CC BY 4.0 (read from the Europe PMC full-text XML licence element, 2026-10-01)",
"verification": "full text fetched via Europe PMC REST fullTextXML on 2026-10-01 and read; snapshot is the extracted text; added in the depth pass",
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"legitimacy": "Diagnostics (Basel, Switzerland) (2026). Europe PMC publication types: research-article, Journal Article. Indexed in PubMed Central / Europe PMC; open-access licence as recorded.",
"journal": "Diagnostics (Basel, Switzerland)",
"year": 2026,
"article_type": "retrospective reappraisal of 23 cases"
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"bracs-paper-arxiv": {
"citation": "Brancati N et al. BRACS: A Dataset for BReAst Carcinoma Subtyping in H&E Histology Images. arXiv:2111.04740 (2021).",
"url": "https://arxiv.org/pdf/2111.04740",
"license": "Two versions, two licences. arXiv version (arXiv:2111.04740): arXiv non-exclusive distribution licence (abstract page links arxiv.org/licenses/nonexclusive-distrib/1.0/). Journal version (Database 2022, baac093, doi 10.1093/database/baac093, PMC9575967): CC BY-NC 4.0. Non-commercial research use; paraphrase with attribution.",
"verification": "PDF fetched 2026-10-01 and converted with pdftotext; snapshot is the extracted text (same paper as base id bracs-paper)",
"snapshot": "data/datasets/knowledge-src/tcga-bracs/snapshots/bracs-paper-arxiv.txt",
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},
"librepath-adh": {
"citation": "Libre Pathology, page 'Atypical ductal hyperplasia', revision 44033 dated 2016-04-30",
"url": "https://librepathology.org/w/index.php?title=Atypical_ductal_hyperplasia&oldid=44033",
"license": "CC BY-NC-SA 3.0 (Copyrights page says NC SA 3.0)",
"verification": "raw wikitext fetched via the MediaWiki API on 2026-10-01 and read; snapshot is the raw wikitext; page may be older than current practice",
"snapshot": "data/datasets/knowledge-src/tcga-bracs/snapshots/librepath-adh.txt",
"sha256": "6f59e1c4135a71b2275cee80f2b6556ec7633ec0b708925fd2af6b4926ed6ba0",
"license_note": "Commercial use generally not allowed (Libre Pathology:Copyrights); footer image alt text on one page says NC-SA 4.0, version inconsistent; paraphrase only, non-commercial use.",
"tier": "T3",
"tier_label": "Libre Pathology (community wiki)",
"legitimacy": "Libre Pathology: volunteer-edited community wiki for pathologists and trainees, not peer-reviewed, no named review board; revision 2016; widely used as a quick reference; NC-SA licence, paraphrase only. Revision predates the WHO 2021 classification, so terms and grades may be outdated."
},
"librepath-breast-pathology": {
"citation": "Libre Pathology, page 'Breast pathology', revision 45259 dated 2016-07-01",
"url": "https://librepathology.org/w/index.php?title=Breast_pathology&oldid=45259",
"license": "CC BY-NC-SA 3.0 (Copyrights page says NC SA 3.0)",
"verification": "raw wikitext fetched via the MediaWiki API on 2026-10-01 and read; snapshot is the raw wikitext; page may be older than current practice",
"snapshot": "data/datasets/knowledge-src/tcga-bracs/snapshots/librepath-breast-pathology.txt",
"sha256": "8131f6fcc77d7615b558065b1437723dcd5be4d5a6b11a86028571fdd3ab4e45",
"license_note": "Commercial use generally not allowed (Libre Pathology:Copyrights); footer image alt text on one page says NC-SA 4.0, version inconsistent; paraphrase only, non-commercial use.",
"tier": "T3",
"tier_label": "Libre Pathology (community wiki)",
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},
"librepath-dcis": {
"citation": "Libre Pathology, page 'Ductal carcinoma in situ', revision 44398 dated 2016-05-12",
"url": "https://librepathology.org/w/index.php?title=Ductal_carcinoma_in_situ&oldid=44398",
"license": "CC BY-NC-SA 3.0 (Copyrights page says NC SA 3.0)",
"verification": "raw wikitext fetched via the MediaWiki API on 2026-10-01 and read; snapshot is the raw wikitext; page may be older than current practice",
"snapshot": "data/datasets/knowledge-src/tcga-bracs/snapshots/librepath-dcis.txt",
"sha256": "e421ea212eec11d2726a010e4baa89cc84a9ecf74c12c5cc06435e8bc4e28b7e",
"license_note": "Commercial use generally not allowed (Libre Pathology:Copyrights); footer image alt text on one page says NC-SA 4.0, version inconsistent; paraphrase only, non-commercial use.",
"tier": "T3",
"tier_label": "Libre Pathology (community wiki)",
"legitimacy": "Libre Pathology: volunteer-edited community wiki for pathologists and trainees, not peer-reviewed, no named review board; revision 2016; widely used as a quick reference; NC-SA licence, paraphrase only. Revision predates the WHO 2021 classification, so terms and grades may be outdated."
},
"librepath-fibroadenoma": {
"citation": "Libre Pathology, page 'Fibroadenoma', revision 51069 dated 2021-01-05",
"url": "https://librepathology.org/w/index.php?title=Fibroadenoma&oldid=51069",
"license": "CC BY-NC-SA 3.0 (Copyrights page says NC SA 3.0)",
"verification": "raw wikitext fetched via the MediaWiki API on 2026-10-01 and read; snapshot is the raw wikitext; page may be older than current practice",
"snapshot": "data/datasets/knowledge-src/tcga-bracs/snapshots/librepath-fibroadenoma.txt",
"sha256": "1d6626c0aad01eccfa8e1262d41d7a6fbb00b46c478de88bedafddf1b831c9fd",
"license_note": "Commercial use generally not allowed (Libre Pathology:Copyrights); footer image alt text on one page says NC-SA 4.0, version inconsistent; paraphrase only, non-commercial use.",
"tier": "T3",
"tier_label": "Libre Pathology (community wiki)",
"legitimacy": "Libre Pathology: volunteer-edited community wiki for pathologists and trainees, not peer-reviewed, no named review board; revision 2021; widely used as a quick reference; NC-SA licence, paraphrase only."
},
"librepath-fibrocystic-breast-changes": {
"citation": "Libre Pathology, page 'Fibrocystic breast changes', revision 40567 dated 2015-10-14",
"url": "https://librepathology.org/w/index.php?title=Fibrocystic_breast_changes&oldid=40567",
"license": "CC BY-NC-SA 3.0 (Copyrights page says NC SA 3.0)",
"verification": "raw wikitext fetched via the MediaWiki API on 2026-10-01 and read; snapshot is the raw wikitext; page may be older than current practice",
"snapshot": "data/datasets/knowledge-src/tcga-bracs/snapshots/librepath-fibrocystic-breast-changes.txt",
"sha256": "3ab4fc08e14315db52b5b2d6b7fd16264a8620d6074bcef14cd3fd5ed8a7d6fe",
"license_note": "Commercial use generally not allowed (Libre Pathology:Copyrights); footer image alt text on one page says NC-SA 4.0, version inconsistent; paraphrase only, non-commercial use.",
"tier": "T3",
"tier_label": "Libre Pathology (community wiki)",
"legitimacy": "Libre Pathology: volunteer-edited community wiki for pathologists and trainees, not peer-reviewed, no named review board; revision 2015; widely used as a quick reference; NC-SA licence, paraphrase only. Revision predates the WHO 2021 classification, so terms and grades may be outdated."
},
"librepath-flat-epithelial-atypia": {
"citation": "Libre Pathology, page 'Flat epithelial atypia', revision 44056 dated 2016-05-01",
"url": "https://librepathology.org/w/index.php?title=Flat_epithelial_atypia&oldid=44056",
"license": "CC BY-NC-SA 3.0 (Copyrights page says NC SA 3.0)",
"verification": "raw wikitext fetched via the MediaWiki API on 2026-10-01 and read; snapshot is the raw wikitext; page may be older than current practice",
"snapshot": "data/datasets/knowledge-src/tcga-bracs/snapshots/librepath-flat-epithelial-atypia.txt",
"sha256": "ed2659f4237af7617ec2d063bd72625326d8b91a17f5c0ec337534c11f51f690",
"license_note": "Commercial use generally not allowed (Libre Pathology:Copyrights); footer image alt text on one page says NC-SA 4.0, version inconsistent; paraphrase only, non-commercial use.",
"tier": "T3",
"tier_label": "Libre Pathology (community wiki)",
"legitimacy": "Libre Pathology: volunteer-edited community wiki for pathologists and trainees, not peer-reviewed, no named review board; revision 2016; widely used as a quick reference; NC-SA licence, paraphrase only. Revision predates the WHO 2021 classification, so terms and grades may be outdated."
},
"librepath-florid-epithelial-hyperplasia": {
"citation": "Libre Pathology, page 'Florid epithelial hyperplasia', revision 51409 dated 2021-09-02",
"url": "https://librepathology.org/w/index.php?title=Florid_epithelial_hyperplasia&oldid=51409",
"license": "CC BY-NC-SA 3.0 (Copyrights page says NC SA 3.0)",
"verification": "raw wikitext fetched via the MediaWiki API on 2026-10-01 and read; snapshot is the raw wikitext; page may be older than current practice",
"snapshot": "data/datasets/knowledge-src/tcga-bracs/snapshots/librepath-florid-epithelial-hyperplasia.txt",
"sha256": "ee9b53a0ab6a681acfcf96a76fa18b94608c63d5ee9bd307e85b93c4ec5a764d",
"license_note": "Commercial use generally not allowed (Libre Pathology:Copyrights); footer image alt text on one page says NC-SA 4.0, version inconsistent; paraphrase only, non-commercial use.",
"tier": "T3",
"tier_label": "Libre Pathology (community wiki)",
"legitimacy": "Libre Pathology: volunteer-edited community wiki for pathologists and trainees, not peer-reviewed, no named review board; revision 2021; widely used as a quick reference; NC-SA licence, paraphrase only."
},
"librepath-idc-breast": {
"citation": "Libre Pathology, page 'Invasive ductal carcinoma of the breast', revision 49465 dated 2018-09-29",
"url": "https://librepathology.org/w/index.php?title=Invasive_ductal_carcinoma_of_the_breast&oldid=49465",
"license": "CC BY-NC-SA 3.0 (Copyrights page says NC SA 3.0)",
"verification": "raw wikitext fetched via the MediaWiki API on 2026-10-01 and read; snapshot is the raw wikitext; page may be older than current practice",
"snapshot": "data/datasets/knowledge-src/tcga-bracs/snapshots/librepath-idc-breast.txt",
"sha256": "e33c4569847b9982154f89d98d968d7c9a3cd4b628b413e9d2aed445fb3d7128",
"license_note": "Commercial use generally not allowed (Libre Pathology:Copyrights); footer image alt text on one page says NC-SA 4.0, version inconsistent; paraphrase only, non-commercial use.",
"tier": "T3",
"tier_label": "Libre Pathology (community wiki)",
"legitimacy": "Libre Pathology: volunteer-edited community wiki for pathologists and trainees, not peer-reviewed, no named review board; revision 2018; widely used as a quick reference; NC-SA licence, paraphrase only. Revision predates the WHO 2021 classification, so terms and grades may be outdated."
},
"librepath-intraductal-papilloma-breast": {
"citation": "Libre Pathology, page 'Intraductal papilloma of the breast', revision 44312 dated 2016-05-09",
"url": "https://librepathology.org/w/index.php?title=Intraductal_papilloma_of_the_breast&oldid=44312",
"license": "CC BY-NC-SA 3.0 (Copyrights page says NC SA 3.0)",
"verification": "raw wikitext fetched via the MediaWiki API on 2026-10-01 and read; snapshot is the raw wikitext; page may be older than current practice",
"snapshot": "data/datasets/knowledge-src/tcga-bracs/snapshots/librepath-intraductal-papilloma-breast.txt",
"sha256": "487e03b95c7d65a56341a9f7abbda89060770116bb274aac97560ff410b082bd",
"license_note": "Commercial use generally not allowed (Libre Pathology:Copyrights); footer image alt text on one page says NC-SA 4.0, version inconsistent; paraphrase only, non-commercial use.",
"tier": "T3",
"tier_label": "Libre Pathology (community wiki)",
"legitimacy": "Libre Pathology: volunteer-edited community wiki for pathologists and trainees, not peer-reviewed, no named review board; revision 2016; widely used as a quick reference; NC-SA licence, paraphrase only. Revision predates the WHO 2021 classification, so terms and grades may be outdated."
},
"librepath-luad": {
"citation": "Libre Pathology, page 'Adenocarcinoma of the lung', revision 51777 dated 2022-01-11",
"url": "https://librepathology.org/w/index.php?title=Adenocarcinoma_of_the_lung&oldid=51777",
"license": "CC BY-NC-SA 3.0 (Copyrights page says NC SA 3.0)",
"verification": "raw wikitext fetched via the MediaWiki API on 2026-10-01 and read; snapshot is the raw wikitext; page may be older than current practice",
"snapshot": "data/datasets/knowledge-src/tcga-bracs/snapshots/librepath-luad.txt",
"sha256": "d9cab475231fc10fd79509b3beae6087ee5bf5e05a19ad1a1ad79eadd6905fe2",
"license_note": "Commercial use generally not allowed (Libre Pathology:Copyrights); footer image alt text on one page says NC-SA 4.0, version inconsistent; paraphrase only, non-commercial use.",
"tier": "T3",
"tier_label": "Libre Pathology (community wiki)",
"legitimacy": "Libre Pathology: volunteer-edited community wiki for pathologists and trainees, not peer-reviewed, no named review board; revision 2022; widely used as a quick reference; NC-SA licence, paraphrase only."
},
"librepath-lung-scc": {
"citation": "Libre Pathology, page 'Squamous cell carcinoma of the lung', revision 46525 dated 2016-12-20",
"url": "https://librepathology.org/w/index.php?title=Squamous_cell_carcinoma_of_the_lung&oldid=46525",
"license": "CC BY-NC-SA 3.0 (Copyrights page says NC SA 3.0)",
"verification": "raw wikitext fetched via the MediaWiki API on 2026-10-01 and read; snapshot is the raw wikitext; page may be older than current practice",
"snapshot": "data/datasets/knowledge-src/tcga-bracs/snapshots/librepath-lung-scc.txt",
"sha256": "c5e019286a80a9d8719d23edc7f34d6238dee3a382a533a9f4e401488d4346f4",
"license_note": "Commercial use generally not allowed (Libre Pathology:Copyrights); footer image alt text on one page says NC-SA 4.0, version inconsistent; paraphrase only, non-commercial use.",
"tier": "T3",
"tier_label": "Libre Pathology (community wiki)",
"legitimacy": "Libre Pathology: volunteer-edited community wiki for pathologists and trainees, not peer-reviewed, no named review board; revision 2016; widely used as a quick reference; NC-SA licence, paraphrase only. Revision predates the WHO 2021 classification, so terms and grades may be outdated."
},
"librepath-non-invasive-breast-carcinoma": {
"citation": "Libre Pathology, page 'Non-invasive breast carcinoma', revision 46815 dated 2017-01-23",
"url": "https://librepathology.org/w/index.php?title=Non-invasive_breast_carcinoma&oldid=46815",
"license": "CC BY-NC-SA 3.0 (Copyrights page says NC SA 3.0)",
"verification": "raw wikitext fetched via the MediaWiki API on 2026-10-01 and read; snapshot is the raw wikitext; page may be older than current practice",
"snapshot": "data/datasets/knowledge-src/tcga-bracs/snapshots/librepath-non-invasive-breast-carcinoma.txt",
"sha256": "6e5117b91c9f278fff1fc3c4167d313a6dc1d25aa15311621ed7131ae2ba6a48",
"license_note": "Commercial use generally not allowed (Libre Pathology:Copyrights); footer image alt text on one page says NC-SA 4.0, version inconsistent; paraphrase only, non-commercial use.",
"tier": "T3",
"tier_label": "Libre Pathology (community wiki)",
"legitimacy": "Libre Pathology: volunteer-edited community wiki for pathologists and trainees, not peer-reviewed, no named review board; revision 2017; widely used as a quick reference; NC-SA licence, paraphrase only. Revision predates the WHO 2021 classification, so terms and grades may be outdated."
},
"librepath-sclerosing-adenosis-breast": {
"citation": "Libre Pathology, page 'Sclerosing adenosis of the breast', revision 45869 dated 2016-09-08",
"url": "https://librepathology.org/w/index.php?title=Sclerosing_adenosis_of_the_breast&oldid=45869",
"license": "CC BY-NC-SA 3.0 (Copyrights page says NC SA 3.0)",
"verification": "raw wikitext fetched via the MediaWiki API on 2026-10-01 and read; snapshot is the raw wikitext; page may be older than current practice",
"snapshot": "data/datasets/knowledge-src/tcga-bracs/snapshots/librepath-sclerosing-adenosis-breast.txt",
"sha256": "1e227fa7af17ea44bd05da63767ea72770edef569a9b1371a8b9a2bc8442c098",
"license_note": "Commercial use generally not allowed (Libre Pathology:Copyrights); footer image alt text on one page says NC-SA 4.0, version inconsistent; paraphrase only, non-commercial use.",
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"verification": "HTML fetched 2026-10-01; snapshot is the page body text plus the footer alt text; licence evidence only, no passage cites it",
"snapshot": "data/datasets/knowledge-src/tcga-bracs/snapshots/librepath-licence-page-tcga-bracs.txt",
"sha256": "fb4cd48e636e44ed076dce3a11ecc4fce2529287bec004b0b6f5e4083b07606f",
"license_note": "Commercial use generally not allowed (Libre Pathology:Copyrights); footer image alt text on one page says NC-SA 4.0, version inconsistent; paraphrase only, non-commercial use.",
"tier": "T3",
"tier_label": "Libre Pathology licence page (record only)",
"legitimacy": "Licence evidence page for Libre Pathology; no passage cites it; kept so the NC-SA wording is traceable."
}
}
}