Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/ji2025_chili/fewshot3/SPLIT.json

@@ -0,0 +1,76 @@
+{
+ "dataset": "ji2025_chili",
+ "kind": "fewshot",
+ "idx": 3,
+ "reference": [
+  "N038_BC",
+  "N038_AC",
+  "N147_TOL",
+  "N150_BC",
+  "N001_TOL",
+  "N001_FU1",
+  "N018_BC",
+  "N018_AC"
+ ],
+ "mixture": [
+  "N064_TOL",
+  "N064_FU1",
+  "N032_AC",
+  "N055_AC",
+  "N136_TOL",
+  "N136_FU1",
+  "N138_TOL",
+  "N138_FU1",
+  "N128_BC",
+  "N128_AC",
+  "N129_BC",
+  "N129_AC",
+  "N158_AC",
+  "N159_BC",
+  "N002_TOL",
+  "N002_FU1",
+  "N005_BC",
+  "N005_AC",
+  "N012_TOL",
+  "N012_FU1",
+  "N022_TOL",
+  "N022_FU1",
+  "N035_TOL",
+  "N043_TOL",
+  "N043_FU1"
+ ],
+ "train_donors": [
+  "N001",
+  "N018",
+  "N038",
+  "N147",
+  "N150"
+ ],
+ "run_json_check": true,
+ "n_reference_samples": 8,
+ "n_mixture_samples": 25,
+ "reference_cells": 29190,
+ "states": 29,
+ "states_merged_minor": 1,
+ "types": [
+  "B cell",
+  "DC",
+  "Monocyte",
+  "NK cell",
+  "Other",
+  "T cell"
+ ],
+ "missing_types": [],
+ "bp_axis_genes": 5736,
+ "genes_kept": 5689,
+ "genes_dropped_not_bulk_valid": 0,
+ "genes_dropped_zero_reference": 47,
+ "aggregates_sha256": "ab2d1c650eea9381badef93975c96714399d8f538655888c433321af04663247",
+ "files": {
+  "reference.tsv.gz": "07c0f825ba6ab60c0a958447cfe9ef9451d0717d07969d93a917741c59b3655d",
+  "state_types.tsv": "f858877ad11696d0b741135b222fb4d22ddc1a9671cf696c262d9f1620ea80c8",
+  "mixture.tsv.gz": "8faeeaf19106de897ab52d3981c344dba54433f6a0dd0603ebee1af19a5b87d7"
+ },
+ "tool_sha256": "70832dddc182ad1955d44d228bd08240649f355c2bc4f41856eea62e24620afc",
+ "common_sha256": "23599c7dc2bade09c3e0f6a613a4a63670adab6d1d1e8468ef175c89bd6e2ebf"
+}

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/ji2025_chili/fewshot3/state_types.tsv

@@ -0,0 +1,30 @@
+state	type	n_cells
+B cell|Effector B cell	B cell	187
+B cell|Memory B cell	B cell	262
+B cell|Naive B cell	B cell	280
+B cell|Plasma cell	B cell	68
+B cell|Transitional B cell	B cell	80
+DC|ASDC	DC	21
+DC|cDC2	DC	414
+DC|pDC	DC	164
+Monocyte|CD14 monocyte	Monocyte	5841
+Monocyte|CD16 monocyte	Monocyte	1222
+Monocyte|Intermediate monocyte	Monocyte	458
+NK cell|CD56bright NK cell	NK cell	416
+NK cell|CD56dim NK cell	NK cell	3249
+NK cell|Proliferating NK cell	NK cell	879
+Other|Erythrocyte	Other	104
+Other|ILC	Other	83
+Other|Platelet	Other	286
+Other|Progenitor cell	Other	142
+T cell|CD8aa	T cell	264
+T cell|DN T cell	T cell	342
+T cell|MAIT	T cell	208
+T cell|Memory CD4 T cell	T cell	3003
+T cell|Memory CD8 T cell	T cell	4510
+T cell|Naive CD4 T cell	T cell	3960
+T cell|Naive CD8 T cell	T cell	637
+T cell|Proliferating T cell	T cell	65
+T cell|Treg	T cell	1254
+T cell|gdT	T cell	779
+DC|minor	DC	12

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/ji2025_chili/fewshot3_full/SPLIT.json

@@ -0,0 +1,77 @@
+{
+ "dataset": "ji2025_chili",
+ "kind": "fewshot",
+ "idx": 3,
+ "reference": [
+  "N038_BC",
+  "N038_AC",
+  "N147_TOL",
+  "N150_BC",
+  "N001_TOL",
+  "N001_FU1",
+  "N018_BC",
+  "N018_AC"
+ ],
+ "mixture": [
+  "N064_TOL",
+  "N064_FU1",
+  "N032_AC",
+  "N055_AC",
+  "N136_TOL",
+  "N136_FU1",
+  "N138_TOL",
+  "N138_FU1",
+  "N128_BC",
+  "N128_AC",
+  "N129_BC",
+  "N129_AC",
+  "N158_AC",
+  "N159_BC",
+  "N002_TOL",
+  "N002_FU1",
+  "N005_BC",
+  "N005_AC",
+  "N012_TOL",
+  "N012_FU1",
+  "N022_TOL",
+  "N022_FU1",
+  "N035_TOL",
+  "N043_TOL",
+  "N043_FU1"
+ ],
+ "train_donors": [
+  "N001",
+  "N018",
+  "N038",
+  "N147",
+  "N150"
+ ],
+ "run_json_check": true,
+ "n_reference_samples": 8,
+ "n_mixture_samples": 25,
+ "reference_cells": 29190,
+ "states": 29,
+ "states_merged_minor": 1,
+ "types": [
+  "B cell",
+  "DC",
+  "Monocyte",
+  "NK cell",
+  "Other",
+  "T cell"
+ ],
+ "missing_types": [],
+ "bp_axis_genes": 18172,
+ "genes_kept": 15802,
+ "genes_dropped_not_bulk_valid": 30,
+ "genes_dropped_zero_reference": 2340,
+ "gene_mode": "full",
+ "aggregates_sha256": "0dfbed64479372c0b0cca489dd54f65c6290d9a89da4f1a09d4accaa7140d35f",
+ "files": {
+  "reference.tsv.gz": "1652c9ea2d60ca41db01a90c02c7a3c17ebe13648b8b1be7658c92cb95421222",
+  "state_types.tsv": "f858877ad11696d0b741135b222fb4d22ddc1a9671cf696c262d9f1620ea80c8",
+  "mixture.tsv.gz": "1e3ab6cf8c69186afba597e128740c71f6d6ea331e15460716f2350ea280ad75"
+ },
+ "tool_sha256": "bb7df6866fa6c477bb1ddcf0e520d615346852be91adcb4d0bfdc2fac51e8bf0",
+ "common_sha256": "6f6e873744fff7d06ff3495b058bdceaa572fce7a932eb0fc6addb74f0711875"
+}

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/ji2025_chili/fewshot3_full/state_types.tsv

@@ -0,0 +1,30 @@
+state	type	n_cells
+B cell|Effector B cell	B cell	187
+B cell|Memory B cell	B cell	262
+B cell|Naive B cell	B cell	280
+B cell|Plasma cell	B cell	68
+B cell|Transitional B cell	B cell	80
+DC|ASDC	DC	21
+DC|cDC2	DC	414
+DC|pDC	DC	164
+Monocyte|CD14 monocyte	Monocyte	5841
+Monocyte|CD16 monocyte	Monocyte	1222
+Monocyte|Intermediate monocyte	Monocyte	458
+NK cell|CD56bright NK cell	NK cell	416
+NK cell|CD56dim NK cell	NK cell	3249
+NK cell|Proliferating NK cell	NK cell	879
+Other|Erythrocyte	Other	104
+Other|ILC	Other	83
+Other|Platelet	Other	286
+Other|Progenitor cell	Other	142
+T cell|CD8aa	T cell	264
+T cell|DN T cell	T cell	342
+T cell|MAIT	T cell	208
+T cell|Memory CD4 T cell	T cell	3003
+T cell|Memory CD8 T cell	T cell	4510
+T cell|Naive CD4 T cell	T cell	3960
+T cell|Naive CD8 T cell	T cell	637
+T cell|Proliferating T cell	T cell	65
+T cell|Treg	T cell	1254
+T cell|gdT	T cell	779
+DC|minor	DC	12