Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261008T050202Z-scsemi-imperial-deck/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/imperial_eskd/scsemi_cv_20261002/pooled/headline.csv

@@ -0,0 +1,2 @@
+dataset,design,unit,arm,label,role,condition,pearson_r,spearman_r,partial_r,broadcast_pearson_r,broadcast_spearman_r,splithalf_r_AB,splithalf_r_AB_sd,splithalf_spearman_AB,sb_reliability,noise_free_ceiling,r_generated_vs_halfB,r_broadcast_vs_halfB,welch_top50,welch_top50_max,welch_top50_chance,welch_top50_broadcast,welch_top50_broadcast_chance,welch_n_sig_obs,welch_n_sig_gen,welch_n_sig_broadcast_per_type,welch_types_scored,limma_top50,limma_top50_max,limma_top50_chance,limma_top50_broadcast,limma_top50_broadcast_chance,limma_n_sig_obs,limma_n_sig_gen,limma_n_sig_broadcast_per_type,limma_types_scored,limma_fbe_top50,limma_fbe_top50_max,limma_fbe_top50_chance,limma_fbe_top50_broadcast,limma_fbe_top50_broadcast_chance,limma_fbe_n_sig_obs,limma_fbe_n_sig_gen,limma_fbe_n_sig_broadcast_per_type,limma_fbe_types_scored,cat50,cat50_chance,cat100,cat100_chance,rbo,rbo_up_down,cat_types,broadcast_cat50,broadcast_cat50_chance,broadcast_cat100,broadcast_cat100_chance,broadcast_rbo,broadcast_rbo_up_down,broadcast_cat_types,repro_pass
+imperial_eskd,scored,scsemi_cv_20261002/pooled,scsemi__raw,"scSemiProfiler, all training pairs (5-fold CV)",scsemi,conditions_pooled_raw.npz@7fbfb797,0.7053598964433999,0.4381901977790693,0.538089704477334,0.6606053132085035,0.35891872041480566,0.895725697380963,0.00229684690007292,0.7113574423831496,0.9434803243393834,0.9711000682817799,0.697096246420857,0.6478884695946181,87,250,4.685080414692495,84,2.267067150501121,2472,634,2242,5,63,250,4.111019221705437,63,2.267067150501121,4880,3153,2104,5,64,250,35.676750362129695,66,5.693941050474507,3140,415,1817,5,0.2,0.00937016082938499,0.21000000000000002,0.01874032165876998,0.2774986735246147,0.19664520671336763,5,0.16799999999999998,0.004534134301002241,0.21399999999999997,0.009068268602004482,0.1772937462567108,0.17125505414813655,5,True

paper-releases/pbisc-diffusion/updates/20261008T050202Z-scsemi-imperial-deck/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/imperial_eskd/scsemi_cv_20261002/pooled/limma/jobs.csv

@@ -0,0 +1,23 @@
+job,offset,n_samples,is_case,filter
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+obs|T cell|filterByExpr,0,147,111111111111111111111111011111111111010111111110000111111111111111111111100111101111111111001111101111110110000011110111011101111011111100000000000,filterByExpr
+obs|B cell|nonzero,871269,147,111111111111111111111111011111111111010111111110000111111111111111111111100111101111111111001111101111110110000011110111011101111011111100000000000,nonzero
+obs|B cell|filterByExpr,871269,147,111111111111111111111111011111111111010111111110000111111111111111111111100111101111111111001111101111110110000011110111011101111011111100000000000,filterByExpr
+obs|Monocyte|nonzero,1742538,146,11111111111111111111111011111111111010111111110000111111111111111111111100111101111111111001111101111110110000011110111011101111011111100000000000,nonzero
+obs|Monocyte|filterByExpr,1742538,146,11111111111111111111111011111111111010111111110000111111111111111111111100111101111111111001111101111110110000011110111011101111011111100000000000,filterByExpr
+obs|NK cell|nonzero,2607880,147,111111111111111111111111011111111111010111111110000111111111111111111111100111101111111111001111101111110110000011110111011101111011111100000000000,nonzero
+obs|NK cell|filterByExpr,2607880,147,111111111111111111111111011111111111010111111110000111111111111111111111100111101111111111001111101111110110000011110111011101111011111100000000000,filterByExpr
+obs|DC|nonzero,3479149,147,111111111111111111111111011111111111010111111110000111111111111111111111100111101111111111001111101111110110000011110111011101111011111100000000000,nonzero
+obs|DC|filterByExpr,3479149,147,111111111111111111111111011111111111010111111110000111111111111111111111100111101111111111001111101111110110000011110111011101111011111100000000000,filterByExpr
+gen:scsemi__raw|T cell|nonzero,4350418,147,111111111111111111111111011111111111010111111110000111111111111111111111100111101111111111001111101111110110000011110111011101111011111100000000000,nonzero
+gen:scsemi__raw|T cell|filterByExpr,4350418,147,111111111111111111111111011111111111010111111110000111111111111111111111100111101111111111001111101111110110000011110111011101111011111100000000000,filterByExpr
+gen:scsemi__raw|B cell|nonzero,5221687,146,11111111111111111111111011111111111010111111110000111111111111111111111100111101111111111001111101111110110000011110111011101111011111100000000000,nonzero
+gen:scsemi__raw|B cell|filterByExpr,5221687,146,11111111111111111111111011111111111010111111110000111111111111111111111100111101111111111001111101111110110000011110111011101111011111100000000000,filterByExpr
+gen:scsemi__raw|Monocyte|nonzero,6087029,145,1111111111111111111111011111111111010111111110000111111111111111111111100111101111111111001111101111110110000011110111011101111011111100000000000,nonzero
+gen:scsemi__raw|Monocyte|filterByExpr,6087029,145,1111111111111111111111011111111111010111111110000111111111111111111111100111101111111111001111101111110110000011110111011101111011111100000000000,filterByExpr
+gen:scsemi__raw|NK cell|nonzero,6946444,144,111111111111111111111011111111111010111111110000111111111111111111111100111101111111111001111101111110110000011110111011101111011111100000000000,nonzero
+gen:scsemi__raw|NK cell|filterByExpr,6946444,144,111111111111111111111011111111111010111111110000111111111111111111111100111101111111111001111101111110110000011110111011101111011111100000000000,filterByExpr
+gen:scsemi__raw|DC|nonzero,7799932,146,11111111111111111111111011111111111010111111110000111111111111111111111100111101111111111001111101111110110000011110111011101111011111100000000000,nonzero
+gen:scsemi__raw|DC|filterByExpr,7799932,146,11111111111111111111111011111111111010111111110000111111111111111111111100111101111111111001111101111110110000011110111011101111011111100000000000,filterByExpr
+bcast:7fbfb797c40ba266|nonzero,8665274,147,111111111111111111111111011111111111010111111110000111111111111111111111100111101111111111001111101111110110000011110111011101111011111100000000000,nonzero
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paper-releases/pbisc-diffusion/updates/20261008T050202Z-scsemi-imperial-deck/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/imperial_eskd/scsemi_cv_20261002/pooled/limma/limma_status.csv

@@ -0,0 +1,23 @@
+"job","status","n_tested","n_sig_fdr05","seconds"
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+"obs|T cell|filterByExpr","ok",3443,683,0.493
+"obs|B cell|nonzero","ok",5645,128,0.782
+"obs|B cell|filterByExpr","ok",2505,284,0.352
+"obs|Monocyte|nonzero","ok",5631,1588,0.75
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+"obs|NK cell|nonzero","ok",5591,530,0.732
+"obs|NK cell|filterByExpr","ok",2418,653,0.332
+"obs|DC|nonzero","ok",5437,2065,0.731
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+"gen:scsemi__raw|T cell|filterByExpr","ok",533,108,0.103
+"gen:scsemi__raw|B cell|nonzero","ok",2919,20,0.321
+"gen:scsemi__raw|B cell|filterByExpr","ok",260,33,0.069
+"gen:scsemi__raw|Monocyte|nonzero","ok",2297,1560,0.292
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+"gen:scsemi__raw|NK cell|filterByExpr","ok",419,112,0.087
+"gen:scsemi__raw|DC|nonzero","ok",1818,1423,0.245
+"gen:scsemi__raw|DC|filterByExpr","ok",220,54,0.063
+"bcast:7fbfb797c40ba266|nonzero","ok",5823,2104,0.879
+"bcast:7fbfb797c40ba266|filterByExpr","ok",4133,1817,0.551

paper-releases/pbisc-diffusion/updates/20261008T050202Z-scsemi-imperial-deck/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/imperial_eskd/scsemi_cv_20261002/pooled/manifest.json

@@ -0,0 +1,384 @@
+{
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+ "dataset": "imperial_eskd",
+ "design": "scored",
+ "unit": "scsemi_cv_20261002/pooled",
+ "written_utc": "2026-10-08T04:49:14.262202+00:00",
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+ "contrast": {
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+  "n_case_donors": 113,
+  "n_control_donors": 34
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+ "calls": {
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+   "condition_sha256": "7fbfb797c40ba266a5a22a572250f7df20b3119772eb426fb9a794de2f36ca46",
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+   "condition_key": "bcast:7fbfb797c40ba266",
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+   "label": "scSemiProfiler, all training pairs (5-fold CV)",
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+ "observed_cells": {
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+ "limma": {
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