Archive 4 checkpoints (1-4)
Browse files- paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/ji2025_chili/fewshot_n5/draw1/limma/versions.txt +3 -0
- paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/ji2025_chili/fewshot_n5/draw1/manifest.json +505 -0
- paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/ji2025_chili/fewshot_n5/draw1/rbo.csv +51 -0
- paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/ji2025_chili/fewshot_n5/draw1/repro.json +53 -0
paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/ji2025_chili/fewshot_n5/draw1/limma/versions.txt
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
R version 4.5.2 (2025-10-31)
|
| 2 |
+
limma 3.66.0
|
| 3 |
+
edgeR 4.8.1
|
paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/ji2025_chili/fewshot_n5/draw1/manifest.json
ADDED
|
@@ -0,0 +1,505 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema": "paired_ft_contrast_extra.v1",
|
| 3 |
+
"dataset": "ji2025_chili",
|
| 4 |
+
"design": "fewshot",
|
| 5 |
+
"unit": "fewshot_n5/draw1",
|
| 6 |
+
"written_utc": "2026-10-02T06:30:36.448930+00:00",
|
| 7 |
+
"command": [
|
| 8 |
+
"tools/contrast_extra.py",
|
| 9 |
+
"--design",
|
| 10 |
+
"fewshot",
|
| 11 |
+
"--dataset",
|
| 12 |
+
"ji2025_chili",
|
| 13 |
+
"--draws",
|
| 14 |
+
"0,1,2,3,4",
|
| 15 |
+
"--threads",
|
| 16 |
+
"4"
|
| 17 |
+
],
|
| 18 |
+
"threads": 4,
|
| 19 |
+
"donors": [
|
| 20 |
+
"N064_TOL",
|
| 21 |
+
"N064_FU1",
|
| 22 |
+
"N032_AC",
|
| 23 |
+
"N038_BC",
|
| 24 |
+
"N038_AC",
|
| 25 |
+
"N055_AC",
|
| 26 |
+
"N138_TOL",
|
| 27 |
+
"N138_FU1",
|
| 28 |
+
"N129_BC",
|
| 29 |
+
"N129_AC",
|
| 30 |
+
"N147_TOL",
|
| 31 |
+
"N158_AC",
|
| 32 |
+
"N001_TOL",
|
| 33 |
+
"N001_FU1",
|
| 34 |
+
"N002_TOL",
|
| 35 |
+
"N002_FU1",
|
| 36 |
+
"N005_BC",
|
| 37 |
+
"N005_AC",
|
| 38 |
+
"N012_TOL",
|
| 39 |
+
"N012_FU1",
|
| 40 |
+
"N018_BC",
|
| 41 |
+
"N018_AC",
|
| 42 |
+
"N022_TOL",
|
| 43 |
+
"N022_FU1",
|
| 44 |
+
"N043_TOL",
|
| 45 |
+
"N043_FU1"
|
| 46 |
+
],
|
| 47 |
+
"n_samples": 26,
|
| 48 |
+
"contrast": {
|
| 49 |
+
"case_groups": [
|
| 50 |
+
"TOL",
|
| 51 |
+
"FU1"
|
| 52 |
+
],
|
| 53 |
+
"control_groups": [
|
| 54 |
+
"BC",
|
| 55 |
+
"AC"
|
| 56 |
+
],
|
| 57 |
+
"n_case_donors": 15,
|
| 58 |
+
"n_control_donors": 11
|
| 59 |
+
},
|
| 60 |
+
"calls": {
|
| 61 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ji2025_chili/fewshot_n5/draw1": {
|
| 62 |
+
"arms": [
|
| 63 |
+
"zs_raw",
|
| 64 |
+
"zs_pseudo",
|
| 65 |
+
"zs_cal",
|
| 66 |
+
"lora5"
|
| 67 |
+
],
|
| 68 |
+
"summary_sha256": "6c5f319e3feef981536f1b51c0bb505f7f0fb6f5248f756a8801490d00213db4",
|
| 69 |
+
"contrast_csv_sha256": "da24f11bb9b53e6bb86f8f842c2bb511258dd10a661da756f10db70a73094e74"
|
| 70 |
+
},
|
| 71 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ji2025_chili/fewshot_n5/draw1_scsemi5": {
|
| 72 |
+
"arms": [
|
| 73 |
+
"scsemi5"
|
| 74 |
+
],
|
| 75 |
+
"summary_sha256": "06bd7823d1048b6dd4763e8bb73ec0b3f15fc68dc332002a96c9f0067afc2bb8",
|
| 76 |
+
"contrast_csv_sha256": "9dda2f03b4a17fa6ce6e2c6b5b9226206a83cfe8d2ee45d4564f571ecb271c6e"
|
| 77 |
+
}
|
| 78 |
+
},
|
| 79 |
+
"notes": {
|
| 80 |
+
"source_tree": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores"
|
| 81 |
+
},
|
| 82 |
+
"reference_sha256": "19c30f56db699eb4f5a642927c1cd6e173212b877c29ff20d84e60a5ecccef6d",
|
| 83 |
+
"deg_reference": {
|
| 84 |
+
"source": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scoring_cache/ji2025_chili/deg_reference.npz",
|
| 85 |
+
"sha256": "4f5eb8c8389ef1308ce3ec44be8be024cedb97de37351d109d9070c818df5a9e"
|
| 86 |
+
},
|
| 87 |
+
"gene_exclusion": null,
|
| 88 |
+
"n_genes_disease_scores": 5752,
|
| 89 |
+
"genes_per_type": {
|
| 90 |
+
"T cell": 3013,
|
| 91 |
+
"B cell": 3263,
|
| 92 |
+
"Monocyte": 3157,
|
| 93 |
+
"NK cell": 3047
|
| 94 |
+
},
|
| 95 |
+
"arms": {
|
| 96 |
+
"zs_raw": {
|
| 97 |
+
"call": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ji2025_chili/fewshot_n5/draw1",
|
| 98 |
+
"npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ji2025_chili/fewshot_n5/zs__raw_all.npz",
|
| 99 |
+
"npz_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ji2025_chili/fewshot_n5/zs__raw_all.npz",
|
| 100 |
+
"npz_sha256": "0d37cb4c8f0f60d75cefb35c8ec7c79c0d1cac6c891bda9205cfb1e195dd7da0",
|
| 101 |
+
"receipt_verified": true,
|
| 102 |
+
"condition": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/ji2025_chili/fewshot_n5/all_usable_raw.npz",
|
| 103 |
+
"condition_sha256": "78d8ac589dee9315807163c174fafde76bd890710e96c512773dfaf9151e5b86",
|
| 104 |
+
"condition_label": "all_usable_raw.npz@78d8ac58",
|
| 105 |
+
"condition_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/ji2025_chili/fewshot_n5/all_usable_raw.npz",
|
| 106 |
+
"condition_key": "bcast:78d8ac589dee9315",
|
| 107 |
+
"n_generated_cells": 39000,
|
| 108 |
+
"label": "Zero-shot, real bulk",
|
| 109 |
+
"seconds": 0.9
|
| 110 |
+
},
|
| 111 |
+
"zs_pseudo": {
|
| 112 |
+
"call": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ji2025_chili/fewshot_n5/draw1",
|
| 113 |
+
"npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ji2025_chili/fewshot_n5/zs__pseudo_all.npz",
|
| 114 |
+
"npz_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ji2025_chili/fewshot_n5/zs__pseudo_all.npz",
|
| 115 |
+
"npz_sha256": "d54f99d9b64e6b113160f858dc6049e3454393fb0211f0bb1ffffddefdbbe11b",
|
| 116 |
+
"receipt_verified": true,
|
| 117 |
+
"condition": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/ji2025_chili/fewshot_n5/all_usable_pseudo.npz",
|
| 118 |
+
"condition_sha256": "49033eab3e3c50d073fe36ebfddb99f34ccf1d47b2125852ab343242d148ddc9",
|
| 119 |
+
"condition_label": "all_usable_pseudo.npz@49033eab",
|
| 120 |
+
"condition_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/ji2025_chili/fewshot_n5/all_usable_pseudo.npz",
|
| 121 |
+
"condition_key": "bcast:49033eab3e3c50d0",
|
| 122 |
+
"n_generated_cells": 39000,
|
| 123 |
+
"label": "Zero-shot, sc pseudobulk input (reference)",
|
| 124 |
+
"seconds": 1.2
|
| 125 |
+
},
|
| 126 |
+
"zs_cal": {
|
| 127 |
+
"call": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ji2025_chili/fewshot_n5/draw1",
|
| 128 |
+
"npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ji2025_chili/fewshot_n5/draw1/zs__cal.npz",
|
| 129 |
+
"npz_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ji2025_chili/fewshot_n5/draw1/zs__cal.npz",
|
| 130 |
+
"npz_sha256": "83f99ddd9abfe1f11f5565f57d51bcf3b6d45580794ed431cb353bce19c18751",
|
| 131 |
+
"receipt_verified": true,
|
| 132 |
+
"condition": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/ji2025_chili/fewshot_n5/draw1/test_cal.npz",
|
| 133 |
+
"condition_sha256": "79890ab3b647143499307219e94c5489041c476a2ba08be9b5de944da6f0b7c9",
|
| 134 |
+
"condition_label": "test_cal.npz@79890ab3",
|
| 135 |
+
"condition_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/ji2025_chili/fewshot_n5/draw1/test_cal.npz",
|
| 136 |
+
"condition_key": "bcast:79890ab3b6471434",
|
| 137 |
+
"n_generated_cells": 39000,
|
| 138 |
+
"label": "Zero-shot + calibration",
|
| 139 |
+
"seconds": 4.6
|
| 140 |
+
},
|
| 141 |
+
"lora5": {
|
| 142 |
+
"call": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ji2025_chili/fewshot_n5/draw1",
|
| 143 |
+
"npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ji2025_chili/fewshot_n5/draw1/lora__raw.npz",
|
| 144 |
+
"npz_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ji2025_chili/fewshot_n5/draw1/lora__raw.npz",
|
| 145 |
+
"npz_sha256": "5de9e6e7579e0551f4ac9b9758591983e3b7f180d31b07b8e45a62d7e357d48f",
|
| 146 |
+
"receipt_verified": true,
|
| 147 |
+
"condition": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/ji2025_chili/fewshot_n5/draw1/test_raw.npz",
|
| 148 |
+
"condition_sha256": "0c873c5de82a9be4c2aba3f1670dddf902c32b351a99677e819367a603fb3bb4",
|
| 149 |
+
"condition_label": "test_raw.npz@0c873c5d",
|
| 150 |
+
"condition_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/ji2025_chili/fewshot_n5/draw1/test_raw.npz",
|
| 151 |
+
"condition_key": "bcast:0c873c5de82a9be4",
|
| 152 |
+
"n_generated_cells": 39000,
|
| 153 |
+
"label": "LoRA, 5 donors",
|
| 154 |
+
"seconds": 7.0
|
| 155 |
+
},
|
| 156 |
+
"scsemi5": {
|
| 157 |
+
"call": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ji2025_chili/fewshot_n5/draw1_scsemi5",
|
| 158 |
+
"npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ji2025_chili/fewshot_n5/draw1/scsemi5__raw.npz",
|
| 159 |
+
"npz_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ji2025_chili/fewshot_n5/draw1/scsemi5__raw.npz",
|
| 160 |
+
"npz_sha256": "facafaebc40b1ae1af965b09a7736ce11ccce65d32d500beca388522f7a88283",
|
| 161 |
+
"receipt_verified": true,
|
| 162 |
+
"condition": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/ji2025_chili/fewshot_n5/draw1/test_raw.npz",
|
| 163 |
+
"condition_sha256": "0c873c5de82a9be4c2aba3f1670dddf902c32b351a99677e819367a603fb3bb4",
|
| 164 |
+
"condition_label": "test_raw.npz@0c873c5d",
|
| 165 |
+
"condition_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/ji2025_chili/fewshot_n5/draw1/test_raw.npz",
|
| 166 |
+
"condition_key": "bcast:0c873c5de82a9be4",
|
| 167 |
+
"n_generated_cells": 39000,
|
| 168 |
+
"label": "scSemiProfiler, 5 donors",
|
| 169 |
+
"seconds": 4.0
|
| 170 |
+
}
|
| 171 |
+
},
|
| 172 |
+
"observed_cells": {
|
| 173 |
+
"inputs_sha256": {
|
| 174 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/ji2025_chili/cells_panel6k.npz": "86a539c63a4544c52a75cd614126bf2f2ee85ef3313763ccb89291e70573140b",
|
| 175 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/ji2025_chili/cells_obs.parquet": "406ce4a632f8ec20f9c22ecd5cec1ac37fb747565d659c751036a489e11a70d5"
|
| 176 |
+
},
|
| 177 |
+
"labels_sha256": "15f939ad216a7bbb08cf65e11809ef90057c4d2e31ad36bf3b3b70b1d5a49ff7",
|
| 178 |
+
"n_cells_4types_scored": 102036
|
| 179 |
+
},
|
| 180 |
+
"params": {
|
| 181 |
+
"split_seeds": [
|
| 182 |
+
20260926,
|
| 183 |
+
20260927,
|
| 184 |
+
20260928,
|
| 185 |
+
20260929,
|
| 186 |
+
20260930
|
| 187 |
+
],
|
| 188 |
+
"split_rule": "per scored sample x contrast type: permutation from default_rng([seed, uint64 LE of sha256('<sample>|<type>')[:8]]) of its cells in canonical order; half A = first floor(n/2) positions, half B = the rest",
|
| 189 |
+
"cat_ks": [
|
| 190 |
+
10,
|
| 191 |
+
20,
|
| 192 |
+
50,
|
| 193 |
+
100,
|
| 194 |
+
200,
|
| 195 |
+
500
|
| 196 |
+
],
|
| 197 |
+
"rbo_p": 0.98,
|
| 198 |
+
"limma_filters": [
|
| 199 |
+
"nonzero",
|
| 200 |
+
"filterByExpr"
|
| 201 |
+
],
|
| 202 |
+
"primary_filter": "nonzero",
|
| 203 |
+
"fdr": 0.05,
|
| 204 |
+
"top_n": 50,
|
| 205 |
+
"min_detect_frac": 0.01,
|
| 206 |
+
"poisson_seed": 20260916,
|
| 207 |
+
"repro_tol": 1e-09
|
| 208 |
+
},
|
| 209 |
+
"limma": {
|
| 210 |
+
"rscript": "/home/sj_server_1/miniforge3/bin/Rscript",
|
| 211 |
+
"versions": [
|
| 212 |
+
"R version 4.5.2 (2025-10-31)",
|
| 213 |
+
"limma 3.66.0",
|
| 214 |
+
"edgeR 4.8.1"
|
| 215 |
+
],
|
| 216 |
+
"n_jobs": 68,
|
| 217 |
+
"n_not_ok": 0,
|
| 218 |
+
"seconds": 7.7,
|
| 219 |
+
"job_matrices": {
|
| 220 |
+
"obs|T cell": {
|
| 221 |
+
"key": "obs|T cell",
|
| 222 |
+
"n_samples": 26,
|
| 223 |
+
"n_case": 15,
|
| 224 |
+
"n_control": 11,
|
| 225 |
+
"n_zero_library_dropped": 0,
|
| 226 |
+
"defined": true
|
| 227 |
+
},
|
| 228 |
+
"obs|B cell": {
|
| 229 |
+
"key": "obs|B cell",
|
| 230 |
+
"n_samples": 26,
|
| 231 |
+
"n_case": 15,
|
| 232 |
+
"n_control": 11,
|
| 233 |
+
"n_zero_library_dropped": 0,
|
| 234 |
+
"defined": true
|
| 235 |
+
},
|
| 236 |
+
"obs|Monocyte": {
|
| 237 |
+
"key": "obs|Monocyte",
|
| 238 |
+
"n_samples": 26,
|
| 239 |
+
"n_case": 15,
|
| 240 |
+
"n_control": 11,
|
| 241 |
+
"n_zero_library_dropped": 0,
|
| 242 |
+
"defined": true
|
| 243 |
+
},
|
| 244 |
+
"obs|NK cell": {
|
| 245 |
+
"key": "obs|NK cell",
|
| 246 |
+
"n_samples": 26,
|
| 247 |
+
"n_case": 15,
|
| 248 |
+
"n_control": 11,
|
| 249 |
+
"n_zero_library_dropped": 0,
|
| 250 |
+
"defined": true
|
| 251 |
+
},
|
| 252 |
+
"obs|DC": {
|
| 253 |
+
"key": "obs|DC",
|
| 254 |
+
"n_samples": 24,
|
| 255 |
+
"n_case": 13,
|
| 256 |
+
"n_control": 11,
|
| 257 |
+
"n_zero_library_dropped": 0,
|
| 258 |
+
"defined": true
|
| 259 |
+
},
|
| 260 |
+
"gen:zs_raw|T cell": {
|
| 261 |
+
"key": "gen:zs_raw|T cell",
|
| 262 |
+
"n_samples": 26,
|
| 263 |
+
"n_case": 15,
|
| 264 |
+
"n_control": 11,
|
| 265 |
+
"n_zero_library_dropped": 0,
|
| 266 |
+
"defined": true
|
| 267 |
+
},
|
| 268 |
+
"gen:zs_raw|B cell": {
|
| 269 |
+
"key": "gen:zs_raw|B cell",
|
| 270 |
+
"n_samples": 26,
|
| 271 |
+
"n_case": 15,
|
| 272 |
+
"n_control": 11,
|
| 273 |
+
"n_zero_library_dropped": 0,
|
| 274 |
+
"defined": true
|
| 275 |
+
},
|
| 276 |
+
"gen:zs_raw|Monocyte": {
|
| 277 |
+
"key": "gen:zs_raw|Monocyte",
|
| 278 |
+
"n_samples": 26,
|
| 279 |
+
"n_case": 15,
|
| 280 |
+
"n_control": 11,
|
| 281 |
+
"n_zero_library_dropped": 0,
|
| 282 |
+
"defined": true
|
| 283 |
+
},
|
| 284 |
+
"gen:zs_raw|NK cell": {
|
| 285 |
+
"key": "gen:zs_raw|NK cell",
|
| 286 |
+
"n_samples": 26,
|
| 287 |
+
"n_case": 15,
|
| 288 |
+
"n_control": 11,
|
| 289 |
+
"n_zero_library_dropped": 0,
|
| 290 |
+
"defined": true
|
| 291 |
+
},
|
| 292 |
+
"gen:zs_raw|DC": {
|
| 293 |
+
"key": "gen:zs_raw|DC",
|
| 294 |
+
"n_samples": 26,
|
| 295 |
+
"n_case": 15,
|
| 296 |
+
"n_control": 11,
|
| 297 |
+
"n_zero_library_dropped": 0,
|
| 298 |
+
"defined": true
|
| 299 |
+
},
|
| 300 |
+
"bcast:78d8ac589dee9315": {
|
| 301 |
+
"key": "bcast:78d8ac589dee9315",
|
| 302 |
+
"n_samples": 26,
|
| 303 |
+
"n_case": 15,
|
| 304 |
+
"n_control": 11,
|
| 305 |
+
"n_zero_library_dropped": 0,
|
| 306 |
+
"defined": true
|
| 307 |
+
},
|
| 308 |
+
"gen:zs_pseudo|T cell": {
|
| 309 |
+
"key": "gen:zs_pseudo|T cell",
|
| 310 |
+
"n_samples": 26,
|
| 311 |
+
"n_case": 15,
|
| 312 |
+
"n_control": 11,
|
| 313 |
+
"n_zero_library_dropped": 0,
|
| 314 |
+
"defined": true
|
| 315 |
+
},
|
| 316 |
+
"gen:zs_pseudo|B cell": {
|
| 317 |
+
"key": "gen:zs_pseudo|B cell",
|
| 318 |
+
"n_samples": 26,
|
| 319 |
+
"n_case": 15,
|
| 320 |
+
"n_control": 11,
|
| 321 |
+
"n_zero_library_dropped": 0,
|
| 322 |
+
"defined": true
|
| 323 |
+
},
|
| 324 |
+
"gen:zs_pseudo|Monocyte": {
|
| 325 |
+
"key": "gen:zs_pseudo|Monocyte",
|
| 326 |
+
"n_samples": 26,
|
| 327 |
+
"n_case": 15,
|
| 328 |
+
"n_control": 11,
|
| 329 |
+
"n_zero_library_dropped": 0,
|
| 330 |
+
"defined": true
|
| 331 |
+
},
|
| 332 |
+
"gen:zs_pseudo|NK cell": {
|
| 333 |
+
"key": "gen:zs_pseudo|NK cell",
|
| 334 |
+
"n_samples": 26,
|
| 335 |
+
"n_case": 15,
|
| 336 |
+
"n_control": 11,
|
| 337 |
+
"n_zero_library_dropped": 0,
|
| 338 |
+
"defined": true
|
| 339 |
+
},
|
| 340 |
+
"gen:zs_pseudo|DC": {
|
| 341 |
+
"key": "gen:zs_pseudo|DC",
|
| 342 |
+
"n_samples": 26,
|
| 343 |
+
"n_case": 15,
|
| 344 |
+
"n_control": 11,
|
| 345 |
+
"n_zero_library_dropped": 0,
|
| 346 |
+
"defined": true
|
| 347 |
+
},
|
| 348 |
+
"bcast:49033eab3e3c50d0": {
|
| 349 |
+
"key": "bcast:49033eab3e3c50d0",
|
| 350 |
+
"n_samples": 26,
|
| 351 |
+
"n_case": 15,
|
| 352 |
+
"n_control": 11,
|
| 353 |
+
"n_zero_library_dropped": 0,
|
| 354 |
+
"defined": true
|
| 355 |
+
},
|
| 356 |
+
"gen:zs_cal|T cell": {
|
| 357 |
+
"key": "gen:zs_cal|T cell",
|
| 358 |
+
"n_samples": 26,
|
| 359 |
+
"n_case": 15,
|
| 360 |
+
"n_control": 11,
|
| 361 |
+
"n_zero_library_dropped": 0,
|
| 362 |
+
"defined": true
|
| 363 |
+
},
|
| 364 |
+
"gen:zs_cal|B cell": {
|
| 365 |
+
"key": "gen:zs_cal|B cell",
|
| 366 |
+
"n_samples": 26,
|
| 367 |
+
"n_case": 15,
|
| 368 |
+
"n_control": 11,
|
| 369 |
+
"n_zero_library_dropped": 0,
|
| 370 |
+
"defined": true
|
| 371 |
+
},
|
| 372 |
+
"gen:zs_cal|Monocyte": {
|
| 373 |
+
"key": "gen:zs_cal|Monocyte",
|
| 374 |
+
"n_samples": 26,
|
| 375 |
+
"n_case": 15,
|
| 376 |
+
"n_control": 11,
|
| 377 |
+
"n_zero_library_dropped": 0,
|
| 378 |
+
"defined": true
|
| 379 |
+
},
|
| 380 |
+
"gen:zs_cal|NK cell": {
|
| 381 |
+
"key": "gen:zs_cal|NK cell",
|
| 382 |
+
"n_samples": 26,
|
| 383 |
+
"n_case": 15,
|
| 384 |
+
"n_control": 11,
|
| 385 |
+
"n_zero_library_dropped": 0,
|
| 386 |
+
"defined": true
|
| 387 |
+
},
|
| 388 |
+
"gen:zs_cal|DC": {
|
| 389 |
+
"key": "gen:zs_cal|DC",
|
| 390 |
+
"n_samples": 26,
|
| 391 |
+
"n_case": 15,
|
| 392 |
+
"n_control": 11,
|
| 393 |
+
"n_zero_library_dropped": 0,
|
| 394 |
+
"defined": true
|
| 395 |
+
},
|
| 396 |
+
"bcast:79890ab3b6471434": {
|
| 397 |
+
"key": "bcast:79890ab3b6471434",
|
| 398 |
+
"n_samples": 26,
|
| 399 |
+
"n_case": 15,
|
| 400 |
+
"n_control": 11,
|
| 401 |
+
"n_zero_library_dropped": 0,
|
| 402 |
+
"defined": true
|
| 403 |
+
},
|
| 404 |
+
"gen:lora5|T cell": {
|
| 405 |
+
"key": "gen:lora5|T cell",
|
| 406 |
+
"n_samples": 26,
|
| 407 |
+
"n_case": 15,
|
| 408 |
+
"n_control": 11,
|
| 409 |
+
"n_zero_library_dropped": 0,
|
| 410 |
+
"defined": true
|
| 411 |
+
},
|
| 412 |
+
"gen:lora5|B cell": {
|
| 413 |
+
"key": "gen:lora5|B cell",
|
| 414 |
+
"n_samples": 26,
|
| 415 |
+
"n_case": 15,
|
| 416 |
+
"n_control": 11,
|
| 417 |
+
"n_zero_library_dropped": 0,
|
| 418 |
+
"defined": true
|
| 419 |
+
},
|
| 420 |
+
"gen:lora5|Monocyte": {
|
| 421 |
+
"key": "gen:lora5|Monocyte",
|
| 422 |
+
"n_samples": 26,
|
| 423 |
+
"n_case": 15,
|
| 424 |
+
"n_control": 11,
|
| 425 |
+
"n_zero_library_dropped": 0,
|
| 426 |
+
"defined": true
|
| 427 |
+
},
|
| 428 |
+
"gen:lora5|NK cell": {
|
| 429 |
+
"key": "gen:lora5|NK cell",
|
| 430 |
+
"n_samples": 26,
|
| 431 |
+
"n_case": 15,
|
| 432 |
+
"n_control": 11,
|
| 433 |
+
"n_zero_library_dropped": 0,
|
| 434 |
+
"defined": true
|
| 435 |
+
},
|
| 436 |
+
"gen:lora5|DC": {
|
| 437 |
+
"key": "gen:lora5|DC",
|
| 438 |
+
"n_samples": 26,
|
| 439 |
+
"n_case": 15,
|
| 440 |
+
"n_control": 11,
|
| 441 |
+
"n_zero_library_dropped": 0,
|
| 442 |
+
"defined": true
|
| 443 |
+
},
|
| 444 |
+
"bcast:0c873c5de82a9be4": {
|
| 445 |
+
"key": "bcast:0c873c5de82a9be4",
|
| 446 |
+
"n_samples": 26,
|
| 447 |
+
"n_case": 15,
|
| 448 |
+
"n_control": 11,
|
| 449 |
+
"n_zero_library_dropped": 0,
|
| 450 |
+
"defined": true
|
| 451 |
+
},
|
| 452 |
+
"gen:scsemi5|T cell": {
|
| 453 |
+
"key": "gen:scsemi5|T cell",
|
| 454 |
+
"n_samples": 26,
|
| 455 |
+
"n_case": 15,
|
| 456 |
+
"n_control": 11,
|
| 457 |
+
"n_zero_library_dropped": 0,
|
| 458 |
+
"defined": true
|
| 459 |
+
},
|
| 460 |
+
"gen:scsemi5|B cell": {
|
| 461 |
+
"key": "gen:scsemi5|B cell",
|
| 462 |
+
"n_samples": 26,
|
| 463 |
+
"n_case": 15,
|
| 464 |
+
"n_control": 11,
|
| 465 |
+
"n_zero_library_dropped": 0,
|
| 466 |
+
"defined": true
|
| 467 |
+
},
|
| 468 |
+
"gen:scsemi5|Monocyte": {
|
| 469 |
+
"key": "gen:scsemi5|Monocyte",
|
| 470 |
+
"n_samples": 26,
|
| 471 |
+
"n_case": 15,
|
| 472 |
+
"n_control": 11,
|
| 473 |
+
"n_zero_library_dropped": 0,
|
| 474 |
+
"defined": true
|
| 475 |
+
},
|
| 476 |
+
"gen:scsemi5|NK cell": {
|
| 477 |
+
"key": "gen:scsemi5|NK cell",
|
| 478 |
+
"n_samples": 25,
|
| 479 |
+
"n_case": 15,
|
| 480 |
+
"n_control": 10,
|
| 481 |
+
"n_zero_library_dropped": 0,
|
| 482 |
+
"defined": true
|
| 483 |
+
},
|
| 484 |
+
"gen:scsemi5|DC": {
|
| 485 |
+
"key": "gen:scsemi5|DC",
|
| 486 |
+
"n_samples": 26,
|
| 487 |
+
"n_case": 15,
|
| 488 |
+
"n_control": 11,
|
| 489 |
+
"n_zero_library_dropped": 0,
|
| 490 |
+
"defined": true
|
| 491 |
+
}
|
| 492 |
+
}
|
| 493 |
+
},
|
| 494 |
+
"repro_all_pass": true,
|
| 495 |
+
"split_half_seconds": 2.3,
|
| 496 |
+
"fetched_from_server2": [],
|
| 497 |
+
"code_sha256": {
|
| 498 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/contrast_extra.py": "b1ae7ded945177e61c1b2971c419c3adf5f9eb5e8868d427d1ba9d0f15fbf482",
|
| 499 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/contrast_extra_limma.R": "f0685f68ddfc00c01fc842073950981c176d980194de2aa70e324f197989f7dc",
|
| 500 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/ft_common.py": "4a6366b0f22208cd58714fc0261b8840c643b9d4569704d560cfd93534cbc747",
|
| 501 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/score_ft.py": "ec5f40b4cea6d5062d0138f3b934abb6465e34cbfeac869c8a0906924c033aec",
|
| 502 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/bulk2sc-paper/scripts/evaluate_generated_vs_truth.py": "48b12d794782b840838853e93e0fc55fab00532c4b3698f4588e926b985d2881"
|
| 503 |
+
},
|
| 504 |
+
"seconds": 28.0
|
| 505 |
+
}
|
paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/ji2025_chili/fewshot_n5/draw1/rbo.csv
ADDED
|
@@ -0,0 +1,51 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
dataset,design,unit,arm,predictor,celltype,p,rbo_ext_t_desc,rbo_ext_t_asc,rbo_ext_mean_up_down,pred_defined,len_obs,len_pred
|
| 2 |
+
ji2025_chili,fewshot,fewshot_n5/draw1,zs_raw,generated:zs_raw,T cell,0.98,0.023509561962043353,0.005758394965957806,0.01463397846400058,True,5685,4217
|
| 3 |
+
ji2025_chili,fewshot,fewshot_n5/draw1,zs_raw,broadcast:all_usable_raw.npz@78d8ac58,T cell,0.98,0.07636306949082143,0.038057151985551305,0.05721011073818637,True,5685,5501
|
| 4 |
+
ji2025_chili,fewshot,fewshot_n5/draw1,zs_raw,generated:zs_raw,B cell,0.98,0.002159990258640856,0.01652562679351086,0.009342808526075858,True,5377,3129
|
| 5 |
+
ji2025_chili,fewshot,fewshot_n5/draw1,zs_raw,broadcast:all_usable_raw.npz@78d8ac58,B cell,0.98,0.016141885790970693,0.001322666408667756,0.008732276099819225,True,5377,5501
|
| 6 |
+
ji2025_chili,fewshot,fewshot_n5/draw1,zs_raw,generated:zs_raw,Monocyte,0.98,0.024658685564284355,0.018918171520083463,0.021788428542183907,True,5696,4298
|
| 7 |
+
ji2025_chili,fewshot,fewshot_n5/draw1,zs_raw,broadcast:all_usable_raw.npz@78d8ac58,Monocyte,0.98,0.0951402813350227,0.03736291800625566,0.06625159967063918,True,5696,5501
|
| 8 |
+
ji2025_chili,fewshot,fewshot_n5/draw1,zs_raw,generated:zs_raw,NK cell,0.98,0.0053912823025307945,0.011987700999137884,0.008689491650834338,True,5494,2894
|
| 9 |
+
ji2025_chili,fewshot,fewshot_n5/draw1,zs_raw,broadcast:all_usable_raw.npz@78d8ac58,NK cell,0.98,0.02418059376212792,0.017484775114107353,0.020832684438117637,True,5494,5501
|
| 10 |
+
ji2025_chili,fewshot,fewshot_n5/draw1,zs_raw,generated:zs_raw,DC,0.98,3.771096420184438e-06,0.0029625274948771175,0.001483149295648651,True,5096,2119
|
| 11 |
+
ji2025_chili,fewshot,fewshot_n5/draw1,zs_raw,broadcast:all_usable_raw.npz@78d8ac58,DC,0.98,0.06788097654627431,0.01762735457717403,0.04275416556172417,True,5096,5501
|
| 12 |
+
ji2025_chili,fewshot,fewshot_n5/draw1,zs_pseudo,generated:zs_pseudo,T cell,0.98,0.01817482136008281,0.022050601529103788,0.020112711444593298,True,5685,4208
|
| 13 |
+
ji2025_chili,fewshot,fewshot_n5/draw1,zs_pseudo,broadcast:all_usable_pseudo.npz@49033eab,T cell,0.98,0.31053401310322837,0.353959669739166,0.3322468414211972,True,5685,5748
|
| 14 |
+
ji2025_chili,fewshot,fewshot_n5/draw1,zs_pseudo,generated:zs_pseudo,B cell,0.98,0.00933788675681502,0.005451136597245204,0.007394511677030112,True,5377,3298
|
| 15 |
+
ji2025_chili,fewshot,fewshot_n5/draw1,zs_pseudo,broadcast:all_usable_pseudo.npz@49033eab,B cell,0.98,0.06993493576512681,0.14309541622749147,0.10651517599630914,True,5377,5748
|
| 16 |
+
ji2025_chili,fewshot,fewshot_n5/draw1,zs_pseudo,generated:zs_pseudo,Monocyte,0.98,0.07859423552021895,0.03683818874530244,0.057716212132760694,True,5696,3860
|
| 17 |
+
ji2025_chili,fewshot,fewshot_n5/draw1,zs_pseudo,broadcast:all_usable_pseudo.npz@49033eab,Monocyte,0.98,0.1512776615331642,0.045586623730705975,0.09843214263193509,True,5696,5748
|
| 18 |
+
ji2025_chili,fewshot,fewshot_n5/draw1,zs_pseudo,generated:zs_pseudo,NK cell,0.98,0.024739866386840833,0.005179469135751623,0.014959667761296229,True,5494,3749
|
| 19 |
+
ji2025_chili,fewshot,fewshot_n5/draw1,zs_pseudo,broadcast:all_usable_pseudo.npz@49033eab,NK cell,0.98,0.24299000950087565,0.4234694208326391,0.33322971516675737,True,5494,5748
|
| 20 |
+
ji2025_chili,fewshot,fewshot_n5/draw1,zs_pseudo,generated:zs_pseudo,DC,0.98,0.0020037183839516277,0.021695720026806767,0.011849719205379198,True,5096,3343
|
| 21 |
+
ji2025_chili,fewshot,fewshot_n5/draw1,zs_pseudo,broadcast:all_usable_pseudo.npz@49033eab,DC,0.98,0.08420171497562028,0.3881374247454751,0.23616956986054768,True,5096,5748
|
| 22 |
+
ji2025_chili,fewshot,fewshot_n5/draw1,zs_cal,generated:zs_cal,T cell,0.98,0.025118503341195763,0.017969485030869623,0.021543994186032693,True,5685,4250
|
| 23 |
+
ji2025_chili,fewshot,fewshot_n5/draw1,zs_cal,broadcast:test_cal.npz@79890ab3,T cell,0.98,0.06021807522316149,0.03622721069552165,0.048222642959341575,True,5685,5501
|
| 24 |
+
ji2025_chili,fewshot,fewshot_n5/draw1,zs_cal,generated:zs_cal,B cell,0.98,0.0017333786875629545,0.009210872144522953,0.005472125416042954,True,5377,3373
|
| 25 |
+
ji2025_chili,fewshot,fewshot_n5/draw1,zs_cal,broadcast:test_cal.npz@79890ab3,B cell,0.98,0.014520127408135018,0.0009667344375301681,0.007743430922832593,True,5377,5501
|
| 26 |
+
ji2025_chili,fewshot,fewshot_n5/draw1,zs_cal,generated:zs_cal,Monocyte,0.98,0.04551254950676303,0.018829795943744156,0.03217117272525359,True,5696,3796
|
| 27 |
+
ji2025_chili,fewshot,fewshot_n5/draw1,zs_cal,broadcast:test_cal.npz@79890ab3,Monocyte,0.98,0.10299994060934849,0.03795448213863987,0.07047721137399418,True,5696,5501
|
| 28 |
+
ji2025_chili,fewshot,fewshot_n5/draw1,zs_cal,generated:zs_cal,NK cell,0.98,0.02082260919049847,0.004729108506279535,0.012775858848389002,True,5494,3141
|
| 29 |
+
ji2025_chili,fewshot,fewshot_n5/draw1,zs_cal,broadcast:test_cal.npz@79890ab3,NK cell,0.98,0.02139530769125066,0.01683334517790238,0.01911432643457652,True,5494,5501
|
| 30 |
+
ji2025_chili,fewshot,fewshot_n5/draw1,zs_cal,generated:zs_cal,DC,0.98,0.028134918057419005,0.0423106535999367,0.035222785828677855,True,5096,2390
|
| 31 |
+
ji2025_chili,fewshot,fewshot_n5/draw1,zs_cal,broadcast:test_cal.npz@79890ab3,DC,0.98,0.07207767897296821,0.018832653888420845,0.04545516643069453,True,5096,5501
|
| 32 |
+
ji2025_chili,fewshot,fewshot_n5/draw1,lora5,generated:lora5,T cell,0.98,0.045263089503688424,0.08270038070376372,0.06398173510372607,True,5685,4260
|
| 33 |
+
ji2025_chili,fewshot,fewshot_n5/draw1,lora5,broadcast:test_raw.npz@0c873c5d,T cell,0.98,0.07636306949082143,0.038057151985551305,0.05721011073818637,True,5685,5501
|
| 34 |
+
ji2025_chili,fewshot,fewshot_n5/draw1,lora5,generated:lora5,B cell,0.98,0.027933089707015395,0.0030977318199556254,0.015515410763485511,True,5377,3301
|
| 35 |
+
ji2025_chili,fewshot,fewshot_n5/draw1,lora5,broadcast:test_raw.npz@0c873c5d,B cell,0.98,0.016141885790970693,0.001322666408667756,0.008732276099819225,True,5377,5501
|
| 36 |
+
ji2025_chili,fewshot,fewshot_n5/draw1,lora5,generated:lora5,Monocyte,0.98,0.21282869557774964,0.08537360420278252,0.14910114989026607,True,5696,3886
|
| 37 |
+
ji2025_chili,fewshot,fewshot_n5/draw1,lora5,broadcast:test_raw.npz@0c873c5d,Monocyte,0.98,0.0951402813350227,0.03736291800625566,0.06625159967063918,True,5696,5501
|
| 38 |
+
ji2025_chili,fewshot,fewshot_n5/draw1,lora5,generated:lora5,NK cell,0.98,0.024058646912018623,0.18208771272604493,0.10307317981903177,True,5494,3702
|
| 39 |
+
ji2025_chili,fewshot,fewshot_n5/draw1,lora5,broadcast:test_raw.npz@0c873c5d,NK cell,0.98,0.02418059376212792,0.017484775114107353,0.020832684438117637,True,5494,5501
|
| 40 |
+
ji2025_chili,fewshot,fewshot_n5/draw1,lora5,generated:lora5,DC,0.98,0.002766500325522763,0.04457370660116081,0.023670103463341786,True,5096,3207
|
| 41 |
+
ji2025_chili,fewshot,fewshot_n5/draw1,lora5,broadcast:test_raw.npz@0c873c5d,DC,0.98,0.06788097654627431,0.01762735457717403,0.04275416556172417,True,5096,5501
|
| 42 |
+
ji2025_chili,fewshot,fewshot_n5/draw1,scsemi5,generated:scsemi5,T cell,0.98,0.006858966299522327,0.00965023413697653,0.008254600218249428,True,5685,2092
|
| 43 |
+
ji2025_chili,fewshot,fewshot_n5/draw1,scsemi5,broadcast:test_raw.npz@0c873c5d,T cell,0.98,0.07636306949082143,0.038057151985551305,0.05721011073818637,True,5685,5501
|
| 44 |
+
ji2025_chili,fewshot,fewshot_n5/draw1,scsemi5,generated:scsemi5,B cell,0.98,0.013444741818410183,0.08433588511717144,0.04889031346779081,True,5377,966
|
| 45 |
+
ji2025_chili,fewshot,fewshot_n5/draw1,scsemi5,broadcast:test_raw.npz@0c873c5d,B cell,0.98,0.016141885790970693,0.001322666408667756,0.008732276099819225,True,5377,5501
|
| 46 |
+
ji2025_chili,fewshot,fewshot_n5/draw1,scsemi5,generated:scsemi5,Monocyte,0.98,0.05516962003635389,0.024760030672041692,0.03996482535419779,True,5696,1355
|
| 47 |
+
ji2025_chili,fewshot,fewshot_n5/draw1,scsemi5,broadcast:test_raw.npz@0c873c5d,Monocyte,0.98,0.0951402813350227,0.03736291800625566,0.06625159967063918,True,5696,5501
|
| 48 |
+
ji2025_chili,fewshot,fewshot_n5/draw1,scsemi5,generated:scsemi5,NK cell,0.98,0.02176595887321604,0.060672392250707974,0.04121917556196201,True,5494,1279
|
| 49 |
+
ji2025_chili,fewshot,fewshot_n5/draw1,scsemi5,broadcast:test_raw.npz@0c873c5d,NK cell,0.98,0.02418059376212792,0.017484775114107353,0.020832684438117637,True,5494,5501
|
| 50 |
+
ji2025_chili,fewshot,fewshot_n5/draw1,scsemi5,generated:scsemi5,DC,0.98,0.004659787209741091,0.3209181934056254,0.16278899030768323,True,5096,716
|
| 51 |
+
ji2025_chili,fewshot,fewshot_n5/draw1,scsemi5,broadcast:test_raw.npz@0c873c5d,DC,0.98,0.06788097654627431,0.01762735457717403,0.04275416556172417,True,5096,5501
|
paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/ji2025_chili/fewshot_n5/draw1/repro.json
ADDED
|
@@ -0,0 +1,53 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"arms": {
|
| 3 |
+
"zs_raw": {
|
| 4 |
+
"contrast_max_abs_diff": 9.71445146547012e-17,
|
| 5 |
+
"contrast_all_equal": true,
|
| 6 |
+
"n_genes_equal": true,
|
| 7 |
+
"welch_lists_equal": true,
|
| 8 |
+
"welch_counts_equal": true,
|
| 9 |
+
"pass": true
|
| 10 |
+
},
|
| 11 |
+
"zs_pseudo": {
|
| 12 |
+
"contrast_max_abs_diff": 9.71445146547012e-17,
|
| 13 |
+
"contrast_all_equal": true,
|
| 14 |
+
"n_genes_equal": true,
|
| 15 |
+
"welch_lists_equal": true,
|
| 16 |
+
"welch_counts_equal": true,
|
| 17 |
+
"pass": true
|
| 18 |
+
},
|
| 19 |
+
"zs_cal": {
|
| 20 |
+
"contrast_max_abs_diff": 9.71445146547012e-17,
|
| 21 |
+
"contrast_all_equal": true,
|
| 22 |
+
"n_genes_equal": true,
|
| 23 |
+
"welch_lists_equal": true,
|
| 24 |
+
"welch_counts_equal": true,
|
| 25 |
+
"pass": true
|
| 26 |
+
},
|
| 27 |
+
"lora5": {
|
| 28 |
+
"contrast_max_abs_diff": 9.020562075079397e-17,
|
| 29 |
+
"contrast_all_equal": true,
|
| 30 |
+
"n_genes_equal": true,
|
| 31 |
+
"welch_lists_equal": true,
|
| 32 |
+
"welch_counts_equal": true,
|
| 33 |
+
"pass": true
|
| 34 |
+
},
|
| 35 |
+
"scsemi5": {
|
| 36 |
+
"contrast_max_abs_diff": 9.020562075079397e-17,
|
| 37 |
+
"contrast_all_equal": true,
|
| 38 |
+
"n_genes_equal": true,
|
| 39 |
+
"welch_lists_equal": true,
|
| 40 |
+
"welch_counts_equal": true,
|
| 41 |
+
"pass": true
|
| 42 |
+
}
|
| 43 |
+
},
|
| 44 |
+
"observed_split_half_full_aggregates": {
|
| 45 |
+
"n_equal": true,
|
| 46 |
+
"det_equal": true,
|
| 47 |
+
"sum_equal_float32": true,
|
| 48 |
+
"cp10k_max_abs_diff_float32": 0.0,
|
| 49 |
+
"cp10k_equal_float32": true
|
| 50 |
+
},
|
| 51 |
+
"comparable_with_scorer": true,
|
| 52 |
+
"all_pass": true
|
| 53 |
+
}
|