Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261013T115045Z-figure-strengthening-154/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/strengthening_20261013/disease_metrics/source_snapshot/plans/paired_finetune_intradataset_20260927/scores_contrast/imperial_eskd/pooled/headline.csv

@@ -0,0 +1,7 @@
+dataset,design,unit,arm,label,role,condition,pearson_r,spearman_r,partial_r,broadcast_pearson_r,broadcast_spearman_r,splithalf_r_AB,splithalf_r_AB_sd,splithalf_spearman_AB,sb_reliability,noise_free_ceiling,r_generated_vs_halfB,r_broadcast_vs_halfB,welch_top50,welch_top50_max,welch_top50_chance,welch_top50_broadcast,welch_top50_broadcast_chance,welch_n_sig_obs,welch_n_sig_gen,welch_n_sig_broadcast_per_type,welch_types_scored,limma_top50,limma_top50_max,limma_top50_chance,limma_top50_broadcast,limma_top50_broadcast_chance,limma_n_sig_obs,limma_n_sig_gen,limma_n_sig_broadcast_per_type,limma_types_scored,limma_fbe_top50,limma_fbe_top50_max,limma_fbe_top50_chance,limma_fbe_top50_broadcast,limma_fbe_top50_broadcast_chance,limma_fbe_n_sig_obs,limma_fbe_n_sig_gen,limma_fbe_n_sig_broadcast_per_type,limma_fbe_types_scored,cat50,cat50_chance,cat100,cat100_chance,rbo,rbo_up_down,cat_types,broadcast_cat50,broadcast_cat50_chance,broadcast_cat100,broadcast_cat100_chance,broadcast_rbo,broadcast_rbo_up_down,broadcast_cat_types,repro_pass
+imperial_eskd,pooled,pooled,pseudo_full__cal,sc-only fine-tune (+ calibration),other,conditions_pooled_cal.npz@79135860,0.8081921526275624,0.5808088433033695,0.6295019503502952,0.6901082987421676,0.4479806299502819,0.895725697380963,0.00229684690007292,0.7113574423831496,0.9434803243393834,0.9711000682817799,0.7945519633779939,0.6772902978661455,129,250,2.990374100420532,97,2.267067150501121,2472,2803,2083,5,114,250,2.990374100420532,72,2.267067150501121,4880,5540,2099,5,119,250,11.369177696785687,75,5.684095928468326,3140,1945,1732,5,0.28,0.005980748200841064,0.354,0.011961496401682129,0.40112324832234975,0.3289569563642371,5,0.2,0.004534134301002241,0.21600000000000003,0.009068268602004482,0.26393246228254874,0.2092578068827716,5,True
+imperial_eskd,pooled,pooled,pseudo_full__raw,"sc-only fine-tune, real bulk",other,conditions_pooled_raw.npz@7fbfb797,0.46880822702400493,0.18031931967724504,0.2392139976562123,0.6606053132085035,0.35891872041480566,0.895725697380963,0.00229684690007292,0.7113574423831496,0.9434803243393834,0.9711000682817799,0.46000379546943365,0.6478884695946181,54,250,2.8766987764307466,84,2.267067150501121,2472,3164,2242,5,83,250,2.8766987764307466,63,2.267067150501121,4880,6213,2104,5,89,250,10.555329971206202,66,5.693941050474507,3140,2252,1817,5,0.16799999999999998,0.005753397552861494,0.2,0.011506795105722988,0.22343214925933466,0.1872001509484859,5,0.16799999999999998,0.004534134301002241,0.21399999999999997,0.009068268602004482,0.1772937462567108,0.17125505414813655,5,True
+imperial_eskd,pooled,pooled,real_lora__raw,"LoRA, all training pairs",lora,conditions_pooled_raw.npz@7fbfb797,0.8187448084273437,0.6312082116419333,0.6899314750539278,0.6606053132085035,0.35891872041480566,0.895725697380963,0.00229684690007292,0.7113574423831496,0.9434803243393834,0.9711000682817799,0.8058407411844704,0.6478884695946181,143,250,2.986051630616731,84,2.267067150501121,2472,3005,2242,5,122,250,2.986051630616731,63,2.267067150501121,4880,4500,2104,5,123,250,9.605241724411044,66,5.693941050474507,3140,1973,1817,5,0.196,0.005972103261233463,0.304,0.011944206522466926,0.4129612127401643,0.30734466567928065,5,0.16799999999999998,0.004534134301002241,0.21399999999999997,0.009068268602004482,0.1772937462567108,0.17125505414813655,5,True
+imperial_eskd,pooled,pooled,zs__cal,Zero-shot + calibration,zs_cal,conditions_pooled_cal.npz@79135860,0.6787028713891314,0.37457257965605567,0.41180392471305144,0.6901082987421676,0.4479806299502819,0.895725697380963,0.00229684690007292,0.7113574423831496,0.9434803243393834,0.9711000682817799,0.6669352779810005,0.6772902978661455,111,250,2.9792716689909833,97,2.267067150501121,2472,3564,2083,5,101,250,2.9792716689909833,72,2.267067150501121,4880,6469,2099,5,98,250,11.749006455810251,75,5.684095928468326,3140,2832,1732,5,0.156,0.005958543337981966,0.23400000000000004,0.011917086675963933,0.26345362049840915,0.20585679805399945,5,0.2,0.004534134301002241,0.21600000000000003,0.009068268602004482,0.26393246228254874,0.2092578068827716,5,True
+imperial_eskd,pooled,pooled,zs__pseudo,"Zero-shot, sc pseudobulk input (reference)",other,conditions_pooled_pseudo.npz@34f4b1ba,0.6815503704232228,0.3628067160710757,0.37307106435697424,0.7786330186973096,0.6557630225764625,0.895725697380963,0.00229684690007292,0.7113574423831496,0.9434803243393834,0.9711000682817799,0.6696195124862332,0.7658808115942666,101,250,3.007298322537988,112,2.2282051345256852,2472,2293,1922,5,102,250,3.007298322537988,86,2.2282051345256852,4880,5056,1039,5,93,250,12.932804597772492,85,5.502573824104944,3140,1948,838,5,0.20800000000000002,0.006014596645075975,0.3,0.01202919329015195,0.2968218880550046,0.24976675721692954,5,0.348,0.004456410269051371,0.368,0.008912820538102741,0.4518621242297166,0.3607078209964744,5,True
+imperial_eskd,pooled,pooled,zs__raw,"Zero-shot, real bulk",zs_raw,conditions_pooled_raw.npz@7fbfb797,0.6439837621001347,0.4638753514684214,0.43172144888499,0.6606053132085035,0.35891872041480566,0.895725697380963,0.00229684690007292,0.7113574423831496,0.9434803243393834,0.9711000682817799,0.6363202166530278,0.6478884695946181,106,250,2.798812557527124,84,2.267067150501121,2472,4575,2242,5,96,250,2.798812557527124,63,2.267067150501121,4880,9429,2104,5,111,250,9.117562319377903,66,5.693941050474507,3140,3595,1817,5,0.096,0.005597625115054248,0.192,0.011195250230108497,0.26054242920954035,0.20237872094764975,5,0.16799999999999998,0.004534134301002241,0.21399999999999997,0.009068268602004482,0.1772937462567108,0.17125505414813655,5,True

paper-releases/pbisc-diffusion/updates/20261013T115045Z-figure-strengthening-154/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/strengthening_20261013/disease_metrics/source_snapshot/plans/paired_finetune_intradataset_20260927/scores_contrast/imperial_eskd/pooled/manifest.json

@@ -0,0 +1,684 @@
+{
+ "schema": "paired_ft_contrast_extra.v1",
+ "dataset": "imperial_eskd",
+ "design": "pooled",
+ "unit": "pooled",
+ "written_utc": "2026-10-02T06:54:34.424435+00:00",
+ "command": [
+  "tools/contrast_extra.py",
+  "--design",
+  "pooled",
+  "--dataset",
+  "imperial_eskd",
+  "--threads",
+  "4"
+ ],
+ "threads": 4,
+ "donors": [
+  "C20_1004",
+  "C20_1404",
+  "C21_1004",
+  "C21_1704",
+  "C21_2504",
+  "C23_2204",
+  "C31_1304",
+  "C31_2004",
+  "C31_2704",
+  "C33_1401",
+  "C33_1601",
+  "C33_1901",
+  "C34_1404",
+  "C34_2104",
+  "C34_2504",
+  "C36_1504",
+  "C36_1704",
+  "C36_2104",
+  "C40_1504",
+  "C40_2204",
+  "C40_0105",
+  "C42_1504",
+  "C42_2204",
+  "C42_2704",
+  "C58_1604",
+  "C58_2501",
+  "C58_2901",
+  "C58_0102",
+  "C58_0402",
+  "C58_1003",
+  "C60_2504",
+  "C63_1704",
+  "C63_2404",
+  "C63_2904",
+  "C65_1704",
+  "C65_2104",
+  "C65_2504",
+  "C69_1804",
+  "C82_2504",
+  "C85_2004",
+  "C93_2104",
+  "C93_2704",
+  "C93_0405",
+  "C101_0601",
+  "C101_1101",
+  "C101_1301",
+  "C101_1801",
+  "C101_2001",
+  "C101_2502",
+  "C103_2204",
+  "C104_2204",
+  "C106_2204",
+  "C108_2204",
+  "C108_1501",
+  "C108_1801",
+  "C108_2201",
+  "C113_0605",
+  "C123_2404",
+  "C123_2904",
+  "C123_0505",
+  "C124_2404",
+  "C124_2704",
+  "C124_0105",
+  "C126_2504",
+  "C126_3004",
+  "C126_0605",
+  "C127_2504",
+  "C127_0405",
+  "C127_1105",
+  "C128_2504",
+  "C128_0405",
+  "C128_1105",
+  "C132_2804",
+  "C132_0205",
+  "C132_1105",
+  "C137_3004",
+  "C137_2502",
+  "C138_3004",
+  "C138_2301",
+  "C138_3001",
+  "C138_0202",
+  "C138_0402",
+  "C140_3004",
+  "C140_2801",
+  "C140_3001",
+  "C140_0202",
+  "C140_0402",
+  "C140_0602",
+  "C140_0902",
+  "C140_1103",
+  "C141_2001",
+  "C141_2201",
+  "C141_3001",
+  "C141_0202",
+  "C142_3004",
+  "C145_3004",
+  "C145_0701",
+  "C145_1201",
+  "C145_1401",
+  "C145_1901",
+  "C145_2301",
+  "C146_3004",
+  "C146_1201",
+  "C146_1401",
+  "C146_1601",
+  "C146_1901",
+  "C146_2301",
+  "C146_2701",
+  "C146_2502",
+  "C147_3004",
+  "C147_1401",
+  "C147_1901",
+  "C152_0405",
+  "C161_1105",
+  "C164_1105",
+  "C167_1205",
+  "C168_1205",
+  "C168_2001",
+  "C168_2301",
+  "C168_3001",
+  "C168_0202",
+  "C168_0403",
+  "C169_1205",
+  "C169_2001",
+  "C169_2301",
+  "C169_0202",
+  "C169_0403",
+  "C170_1205",
+  "C170_2301",
+  "C170_0202",
+  "C170_0402",
+  "C170_0403",
+  "C187_2605",
+  "C187_1201",
+  "C187_1401",
+  "C187_1901",
+  "C187_2301",
+  "C187_2502",
+  "C190_2605",
+  "C190_2901",
+  "C190_0102",
+  "C190_0302",
+  "C190_0502",
+  "C190_0802",
+  "C190_1002",
+  "C190_0903",
+  "C193_2605",
+  "C195_2605",
+  "C197_2605",
+  "C212_2705",
+  "C214_2705",
+  "C234_2805",
+  "C237_2805",
+  "C238_2905",
+  "C240_2905",
+  "C246_2905",
+  "C251_2905"
+ ],
+ "n_samples": 157,
+ "contrast": {
+  "case_groups": [
+   "covid_positive"
+  ],
+  "control_groups": [
+   "covid_negative"
+  ],
+  "n_case_donors": 113,
+  "n_control_donors": 34
+ },
+ "calls": {
+  "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/imperial_eskd/pooled": {
+   "arms": [
+    "pseudo_full__cal",
+    "pseudo_full__raw",
+    "real_lora__raw",
+    "zs__cal",
+    "zs__pseudo",
+    "zs__raw"
+   ],
+   "summary_sha256": "b302d03ecf5631785a2d59766f79163d390f89cc94214a1b5f5782fe33ed4848",
+   "contrast_csv_sha256": "d0eddadd651debbf1db0cc536ad82473ce0c5bcbee91feddfe5fbec3d1ada0f4"
+  }
+ },
+ "notes": {
+  "source_tree": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores"
+ },
+ "reference_sha256": "34b4caa3f8a60b46d5faf58f09cdaa5622bcce19e4c45d9902a711fead96375e",
+ "deg_reference": {
+  "source": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scoring_cache/imperial_eskd/deg_reference.npz",
+  "sha256": "8fada1ace7530b79bfc5c5201b9cb60399ff77d083dd8b53b13cfbe900cda55c"
+ },
+ "gene_exclusion": null,
+ "n_genes_disease_scores": 5927,
+ "genes_per_type": {
+  "T cell": 3031,
+  "B cell": 3184,
+  "Monocyte": 2877,
+  "NK cell": 2964
+ },
+ "arms": {
+  "pseudo_full__cal": {
+   "call": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/imperial_eskd/pooled",
+   "npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/imperial_eskd/pooled/pseudo_full__cal.npz",
+   "npz_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/_fetch_tmp/generated/imperial_eskd/pooled/pseudo_full__cal.npz",
+   "npz_sha256": "73dc9ca72ade5ad819a5486a1d8b70d6ff90eb75562dc36c777dd8c2157df8d3",
+   "receipt_verified": true,
+   "condition": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/imperial_eskd/pooled/conditions_pooled_cal.npz",
+   "condition_sha256": "79135860513d3de98f65d3736a7b7bd14528fc9a1c5c543776da29d38256df51",
+   "condition_label": "conditions_pooled_cal.npz@79135860",
+   "condition_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/_fetch_tmp/generated/imperial_eskd/pooled/conditions_pooled_cal.npz",
+   "condition_key": "bcast:79135860513d3de9",
+   "n_generated_cells": 235500,
+   "label": "sc-only fine-tune (+ calibration)",
+   "seconds": 66.5
+  },
+  "pseudo_full__raw": {
+   "call": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/imperial_eskd/pooled",
+   "npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/imperial_eskd/pooled/pseudo_full__raw.npz",
+   "npz_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/_fetch_tmp/generated/imperial_eskd/pooled/pseudo_full__raw.npz",
+   "npz_sha256": "dd476571399f26f38710055a322456f03a119e0334e0243ea89534d5fb26948c",
+   "receipt_verified": true,
+   "condition": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/imperial_eskd/pooled/conditions_pooled_raw.npz",
+   "condition_sha256": "7fbfb797c40ba266a5a22a572250f7df20b3119772eb426fb9a794de2f36ca46",
+   "condition_label": "conditions_pooled_raw.npz@7fbfb797",
+   "condition_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/_fetch_tmp/generated/imperial_eskd/pooled/conditions_pooled_raw.npz",
+   "condition_key": "bcast:7fbfb797c40ba266",
+   "n_generated_cells": 235500,
+   "label": "sc-only fine-tune, real bulk",
+   "seconds": 65.4
+  },
+  "real_lora__raw": {
+   "call": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/imperial_eskd/pooled",
+   "npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/imperial_eskd/pooled/real_lora__raw.npz",
+   "npz_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/_fetch_tmp/generated/imperial_eskd/pooled/real_lora__raw.npz",
+   "npz_sha256": "a22e55bb165143447e0311a91cc03e87fb7b90ae5bc1cd15635c97ade7200166",
+   "receipt_verified": true,
+   "condition": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/imperial_eskd/pooled/conditions_pooled_raw.npz",
+   "condition_sha256": "7fbfb797c40ba266a5a22a572250f7df20b3119772eb426fb9a794de2f36ca46",
+   "condition_label": "conditions_pooled_raw.npz@7fbfb797",
+   "condition_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/_fetch_tmp/generated/imperial_eskd/pooled/conditions_pooled_raw.npz",
+   "condition_key": "bcast:7fbfb797c40ba266",
+   "n_generated_cells": 235500,
+   "label": "LoRA, all training pairs",
+   "seconds": 67.5
+  },
+  "zs__cal": {
+   "call": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/imperial_eskd/pooled",
+   "npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/imperial_eskd/pooled/zs__cal.npz",
+   "npz_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/_fetch_tmp/generated/imperial_eskd/pooled/zs__cal.npz",
+   "npz_sha256": "3017737d059087ff77681faae2cb29ba44292c0b51f66ebc639d5633fa3e6fc1",
+   "receipt_verified": true,
+   "condition": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/imperial_eskd/pooled/conditions_pooled_cal.npz",
+   "condition_sha256": "79135860513d3de98f65d3736a7b7bd14528fc9a1c5c543776da29d38256df51",
+   "condition_label": "conditions_pooled_cal.npz@79135860",
+   "condition_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/_fetch_tmp/generated/imperial_eskd/pooled/conditions_pooled_cal.npz",
+   "condition_key": "bcast:79135860513d3de9",
+   "n_generated_cells": 235500,
+   "label": "Zero-shot + calibration",
+   "seconds": 68.4
+  },
+  "zs__pseudo": {
+   "call": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/imperial_eskd/pooled",
+   "npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/imperial_eskd/pooled/zs__pseudo.npz",
+   "npz_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/_fetch_tmp/generated/imperial_eskd/pooled/zs__pseudo.npz",
+   "npz_sha256": "464542acee650779d0e87c5f9bec3158f0ce7866f56f21c102c89861d6ece6aa",
+   "receipt_verified": true,
+   "condition": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/imperial_eskd/pooled/conditions_pooled_pseudo.npz",
+   "condition_sha256": "34f4b1ba6a109ee37b0ae414bbe54f1146b4f960dbfa407ad781a6c5d859323f",
+   "condition_label": "conditions_pooled_pseudo.npz@34f4b1ba",
+   "condition_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/_fetch_tmp/generated/imperial_eskd/pooled/conditions_pooled_pseudo.npz",
+   "condition_key": "bcast:34f4b1ba6a109ee3",
+   "n_generated_cells": 235500,
+   "label": "Zero-shot, sc pseudobulk input (reference)",
+   "seconds": 69.0
+  },
+  "zs__raw": {
+   "call": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/imperial_eskd/pooled",
+   "npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/imperial_eskd/pooled/zs__raw.npz",
+   "npz_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/_fetch_tmp/generated/imperial_eskd/pooled/zs__raw.npz",
+   "npz_sha256": "048a82bf2502a8734b4f6e76af23f83a637738a533014e168cd78faf43fb0992",
+   "receipt_verified": true,
+   "condition": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/imperial_eskd/pooled/conditions_pooled_raw.npz",
+   "condition_sha256": "7fbfb797c40ba266a5a22a572250f7df20b3119772eb426fb9a794de2f36ca46",
+   "condition_label": "conditions_pooled_raw.npz@7fbfb797",
+   "condition_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/_fetch_tmp/generated/imperial_eskd/pooled/conditions_pooled_raw.npz",
+   "condition_key": "bcast:7fbfb797c40ba266",
+   "n_generated_cells": 235500,
+   "label": "Zero-shot, real bulk",
+   "seconds": 71.8
+  }
+ },
+ "observed_cells": {
+  "inputs_sha256": {
+   "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/imperial_eskd/cells_panel6k.npz": "d648fa1b9efa15f02c5500c85795d33c39cc88857560bf8f0aae41f6d43a3de7",
+   "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/imperial_eskd/cells_obs.parquet": "58d685b6b9510cd07bcabe61f90a1567b9d483efe3c1c035305fd3525682aa97"
+  },
+  "labels_sha256": "b7451fb96819132a1b72d739ebe95a78674a764769ee80746975adaed55cf67f",
+  "n_cells_4types_scored": 494503
+ },
+ "params": {
+  "split_seeds": [
+   20260926,
+   20260927,
+   20260928,
+   20260929,
+   20260930
+  ],
+  "split_rule": "per scored sample x contrast type: permutation from default_rng([seed, uint64 LE of sha256('<sample>|<type>')[:8]]) of its cells in canonical order; half A = first floor(n/2) positions, half B = the rest",
+  "cat_ks": [
+   10,
+   20,
+   50,
+   100,
+   200,
+   500
+  ],
+  "rbo_p": 0.98,
+  "limma_filters": [
+   "nonzero",
+   "filterByExpr"
+  ],
+  "primary_filter": "nonzero",
+  "fdr": 0.05,
+  "top_n": 50,
+  "min_detect_frac": 0.01,
+  "poisson_seed": 20260916,
+  "repro_tol": 1e-09
+ },
+ "limma": {
+  "rscript": "/home/sj_server_1/miniforge3/bin/Rscript",
+  "versions": [
+   "R version 4.5.2 (2025-10-31)",
+   "limma 3.66.0",
+   "edgeR 4.8.1"
+  ],
+  "n_jobs": 76,
+  "n_not_ok": 0,
+  "seconds": 52.7,
+  "job_matrices": {
+   "obs|T cell": {
+    "key": "obs|T cell",
+    "n_samples": 147,
+    "n_case": 113,
+    "n_control": 34,
+    "n_zero_library_dropped": 0,
+    "defined": true
+   },
+   "obs|B cell": {
+    "key": "obs|B cell",
+    "n_samples": 147,
+    "n_case": 113,
+    "n_control": 34,
+    "n_zero_library_dropped": 0,
+    "defined": true
+   },
+   "obs|Monocyte": {
+    "key": "obs|Monocyte",
+    "n_samples": 146,
+    "n_case": 112,
+    "n_control": 34,
+    "n_zero_library_dropped": 0,
+    "defined": true
+   },
+   "obs|NK cell": {
+    "key": "obs|NK cell",
+    "n_samples": 147,
+    "n_case": 113,
+    "n_control": 34,
+    "n_zero_library_dropped": 0,
+    "defined": true
+   },
+   "obs|DC": {
+    "key": "obs|DC",
+    "n_samples": 147,
+    "n_case": 113,
+    "n_control": 34,
+    "n_zero_library_dropped": 0,
+    "defined": true
+   },
+   "gen:pseudo_full__cal|T cell": {
+    "key": "gen:pseudo_full__cal|T cell",
+    "n_samples": 147,
+    "n_case": 113,
+    "n_control": 34,
+    "n_zero_library_dropped": 0,
+    "defined": true
+   },
+   "gen:pseudo_full__cal|B cell": {
+    "key": "gen:pseudo_full__cal|B cell",
+    "n_samples": 147,
+    "n_case": 113,
+    "n_control": 34,
+    "n_zero_library_dropped": 0,
+    "defined": true
+   },
+   "gen:pseudo_full__cal|Monocyte": {
+    "key": "gen:pseudo_full__cal|Monocyte",
+    "n_samples": 147,
+    "n_case": 113,
+    "n_control": 34,
+    "n_zero_library_dropped": 0,
+    "defined": true
+   },
+   "gen:pseudo_full__cal|NK cell": {
+    "key": "gen:pseudo_full__cal|NK cell",
+    "n_samples": 147,
+    "n_case": 113,
+    "n_control": 34,
+    "n_zero_library_dropped": 0,
+    "defined": true
+   },
+   "gen:pseudo_full__cal|DC": {
+    "key": "gen:pseudo_full__cal|DC",
+    "n_samples": 147,
+    "n_case": 113,
+    "n_control": 34,
+    "n_zero_library_dropped": 0,
+    "defined": true
+   },
+   "bcast:79135860513d3de9": {
+    "key": "bcast:79135860513d3de9",
+    "n_samples": 147,
+    "n_case": 113,
+    "n_control": 34,
+    "n_zero_library_dropped": 0,
+    "defined": true
+   },
+   "gen:pseudo_full__raw|T cell": {
+    "key": "gen:pseudo_full__raw|T cell",
+    "n_samples": 147,
+    "n_case": 113,
+    "n_control": 34,
+    "n_zero_library_dropped": 0,
+    "defined": true
+   },
+   "gen:pseudo_full__raw|B cell": {
+    "key": "gen:pseudo_full__raw|B cell",
+    "n_samples": 147,
+    "n_case": 113,
+    "n_control": 34,
+    "n_zero_library_dropped": 0,
+    "defined": true
+   },
+   "gen:pseudo_full__raw|Monocyte": {
+    "key": "gen:pseudo_full__raw|Monocyte",
+    "n_samples": 147,
+    "n_case": 113,
+    "n_control": 34,
+    "n_zero_library_dropped": 0,
+    "defined": true
+   },
+   "gen:pseudo_full__raw|NK cell": {
+    "key": "gen:pseudo_full__raw|NK cell",
+    "n_samples": 147,
+    "n_case": 113,
+    "n_control": 34,
+    "n_zero_library_dropped": 0,
+    "defined": true
+   },
+   "gen:pseudo_full__raw|DC": {
+    "key": "gen:pseudo_full__raw|DC",
+    "n_samples": 147,
+    "n_case": 113,
+    "n_control": 34,
+    "n_zero_library_dropped": 0,
+    "defined": true
+   },
+   "bcast:7fbfb797c40ba266": {
+    "key": "bcast:7fbfb797c40ba266",
+    "n_samples": 147,
+    "n_case": 113,
+    "n_control": 34,
+    "n_zero_library_dropped": 0,
+    "defined": true
+   },
+   "gen:real_lora__raw|T cell": {
+    "key": "gen:real_lora__raw|T cell",
+    "n_samples": 147,
+    "n_case": 113,
+    "n_control": 34,
+    "n_zero_library_dropped": 0,
+    "defined": true
+   },
+   "gen:real_lora__raw|B cell": {
+    "key": "gen:real_lora__raw|B cell",
+    "n_samples": 147,
+    "n_case": 113,
+    "n_control": 34,
+    "n_zero_library_dropped": 0,
+    "defined": true
+   },
+   "gen:real_lora__raw|Monocyte": {
+    "key": "gen:real_lora__raw|Monocyte",
+    "n_samples": 147,
+    "n_case": 113,
+    "n_control": 34,
+    "n_zero_library_dropped": 0,
+    "defined": true
+   },
+   "gen:real_lora__raw|NK cell": {
+    "key": "gen:real_lora__raw|NK cell",
+    "n_samples": 147,
+    "n_case": 113,
+    "n_control": 34,
+    "n_zero_library_dropped": 0,
+    "defined": true
+   },
+   "gen:real_lora__raw|DC": {
+    "key": "gen:real_lora__raw|DC",
+    "n_samples": 147,
+    "n_case": 113,
+    "n_control": 34,
+    "n_zero_library_dropped": 0,
+    "defined": true
+   },
+   "gen:zs__cal|T cell": {
+    "key": "gen:zs__cal|T cell",
+    "n_samples": 147,
+    "n_case": 113,
+    "n_control": 34,
+    "n_zero_library_dropped": 0,
+    "defined": true
+   },
+   "gen:zs__cal|B cell": {
+    "key": "gen:zs__cal|B cell",
+    "n_samples": 147,
+    "n_case": 113,
+    "n_control": 34,
+    "n_zero_library_dropped": 0,
+    "defined": true
+   },
+   "gen:zs__cal|Monocyte": {
+    "key": "gen:zs__cal|Monocyte",
+    "n_samples": 147,
+    "n_case": 113,
+    "n_control": 34,
+    "n_zero_library_dropped": 0,
+    "defined": true
+   },
+   "gen:zs__cal|NK cell": {
+    "key": "gen:zs__cal|NK cell",
+    "n_samples": 147,
+    "n_case": 113,
+    "n_control": 34,
+    "n_zero_library_dropped": 0,
+    "defined": true
+   },
+   "gen:zs__cal|DC": {
+    "key": "gen:zs__cal|DC",
+    "n_samples": 146,
+    "n_case": 112,
+    "n_control": 34,
+    "n_zero_library_dropped": 0,
+    "defined": true
+   },
+   "gen:zs__pseudo|T cell": {
+    "key": "gen:zs__pseudo|T cell",
+    "n_samples": 147,
+    "n_case": 113,
+    "n_control": 34,
+    "n_zero_library_dropped": 0,
+    "defined": true
+   },
+   "gen:zs__pseudo|B cell": {
+    "key": "gen:zs__pseudo|B cell",
+    "n_samples": 147,
+    "n_case": 113,
+    "n_control": 34,
+    "n_zero_library_dropped": 0,
+    "defined": true
+   },
+   "gen:zs__pseudo|Monocyte": {
+    "key": "gen:zs__pseudo|Monocyte",
+    "n_samples": 147,
+    "n_case": 113,
+    "n_control": 34,
+    "n_zero_library_dropped": 0,
+    "defined": true
+   },
+   "gen:zs__pseudo|NK cell": {
+    "key": "gen:zs__pseudo|NK cell",
+    "n_samples": 147,
+    "n_case": 113,
+    "n_control": 34,
+    "n_zero_library_dropped": 0,
+    "defined": true
+   },
+   "gen:zs__pseudo|DC": {
+    "key": "gen:zs__pseudo|DC",
+    "n_samples": 147,
+    "n_case": 113,
+    "n_control": 34,
+    "n_zero_library_dropped": 0,
+    "defined": true
+   },
+   "bcast:34f4b1ba6a109ee3": {
+    "key": "bcast:34f4b1ba6a109ee3",
+    "n_samples": 147,
+    "n_case": 113,
+    "n_control": 34,
+    "n_zero_library_dropped": 0,
+    "defined": true
+   },
+   "gen:zs__raw|T cell": {
+    "key": "gen:zs__raw|T cell",
+    "n_samples": 147,
+    "n_case": 113,
+    "n_control": 34,
+    "n_zero_library_dropped": 0,
+    "defined": true
+   },
+   "gen:zs__raw|B cell": {
+    "key": "gen:zs__raw|B cell",
+    "n_samples": 147,
+    "n_case": 113,
+    "n_control": 34,
+    "n_zero_library_dropped": 0,
+    "defined": true
+   },
+   "gen:zs__raw|Monocyte": {
+    "key": "gen:zs__raw|Monocyte",
+    "n_samples": 147,
+    "n_case": 113,
+    "n_control": 34,
+    "n_zero_library_dropped": 0,
+    "defined": true
+   },
+   "gen:zs__raw|NK cell": {
+    "key": "gen:zs__raw|NK cell",
+    "n_samples": 147,
+    "n_case": 113,
+    "n_control": 34,
+    "n_zero_library_dropped": 0,
+    "defined": true
+   },
+   "gen:zs__raw|DC": {
+    "key": "gen:zs__raw|DC",
+    "n_samples": 147,
+    "n_case": 113,
+    "n_control": 34,
+    "n_zero_library_dropped": 0,
+    "defined": true
+   }
+  }
+ },
+ "repro_all_pass": true,
+ "split_half_seconds": 16.7,
+ "fetched_from_server2": [
+  "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/_fetch_tmp/generated/imperial_eskd/pooled/conditions_pooled_cal.npz",
+  "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/_fetch_tmp/generated/imperial_eskd/pooled/conditions_pooled_pseudo.npz",
+  "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/_fetch_tmp/generated/imperial_eskd/pooled/conditions_pooled_raw.npz",
+  "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/_fetch_tmp/generated/imperial_eskd/pooled/pseudo_full__cal.npz",
+  "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/_fetch_tmp/generated/imperial_eskd/pooled/pseudo_full__raw.npz",
+  "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/_fetch_tmp/generated/imperial_eskd/pooled/real_lora__raw.npz",
+  "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/_fetch_tmp/generated/imperial_eskd/pooled/zs__cal.npz",
+  "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/_fetch_tmp/generated/imperial_eskd/pooled/zs__pseudo.npz",
+  "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/_fetch_tmp/generated/imperial_eskd/pooled/zs__raw.npz"
+ ],
+ "code_sha256": {
+  "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/contrast_extra.py": "b1ae7ded945177e61c1b2971c419c3adf5f9eb5e8868d427d1ba9d0f15fbf482",
+  "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/contrast_extra_limma.R": "f0685f68ddfc00c01fc842073950981c176d980194de2aa70e324f197989f7dc",
+  "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/ft_common.py": "4a6366b0f22208cd58714fc0261b8840c643b9d4569704d560cfd93534cbc747",
+  "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/score_ft.py": "ec5f40b4cea6d5062d0138f3b934abb6465e34cbfeac869c8a0906924c033aec",
+  "/home/sj_server_1/PBISC/immun-pbmc-fm/bulk2sc-paper/scripts/evaluate_generated_vs_truth.py": "48b12d794782b840838853e93e0fc55fab00532c4b3698f4588e926b985d2881"
+ },
+ "seconds": 481.6
+}

paper-releases/pbisc-diffusion/updates/20261013T115045Z-figure-strengthening-154/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/strengthening_20261013/disease_metrics/source_snapshot/plans/paired_finetune_intradataset_20260927/scores_contrast/imperial_eskd/pooled/rbo.csv

@@ -0,0 +1,61 @@
+dataset,design,unit,arm,predictor,celltype,p,rbo_ext_t_desc,rbo_ext_t_asc,rbo_ext_mean_up_down,pred_defined,len_obs,len_pred
+imperial_eskd,pooled,pooled,pseudo_full__cal,generated:pseudo_full__cal,T cell,0.98,0.44962365440862856,0.3414182073833059,0.39552093089596724,True,5755,4715
+imperial_eskd,pooled,pooled,pseudo_full__cal,broadcast:conditions_pooled_cal.npz@79135860,T cell,0.98,0.31144239993264694,0.2200057564724045,0.26572407820252575,True,5755,5823
+imperial_eskd,pooled,pooled,pseudo_full__cal,generated:pseudo_full__cal,B cell,0.98,0.3564918848369574,0.2259827658369892,0.2912373253369733,True,5645,4057
+imperial_eskd,pooled,pooled,pseudo_full__cal,broadcast:conditions_pooled_cal.npz@79135860,B cell,0.98,0.23721853167462625,0.15781548639125598,0.19751700903294112,True,5645,5823
+imperial_eskd,pooled,pooled,pseudo_full__cal,generated:pseudo_full__cal,Monocyte,0.98,0.35203212048111543,0.21109315340346171,0.28156263694228856,True,5631,4202
+imperial_eskd,pooled,pooled,pseudo_full__cal,broadcast:conditions_pooled_cal.npz@79135860,Monocyte,0.98,0.26228595194444176,0.07433960231981705,0.16831277713212942,True,5631,5823
+imperial_eskd,pooled,pooled,pseudo_full__cal,generated:pseudo_full__cal,NK cell,0.98,0.4599926447390592,0.2921676530903364,0.37608014891469776,True,5591,4062
+imperial_eskd,pooled,pooled,pseudo_full__cal,broadcast:conditions_pooled_cal.npz@79135860,NK cell,0.98,0.25450926025279574,0.20529886219222507,0.2299040612225104,True,5591,5823
+imperial_eskd,pooled,pooled,pseudo_full__cal,generated:pseudo_full__cal,DC,0.98,0.38747593714598827,0.21329154231652897,0.30038373973125865,True,5437,3957
+imperial_eskd,pooled,pooled,pseudo_full__cal,broadcast:conditions_pooled_cal.npz@79135860,DC,0.98,0.2542061676082331,0.11545605003926951,0.1848311088237513,True,5437,5823
+imperial_eskd,pooled,pooled,pseudo_full__raw,generated:pseudo_full__raw,T cell,0.98,0.23062977153989417,0.07189438274701603,0.1512620771434551,True,5755,4790
+imperial_eskd,pooled,pooled,pseudo_full__raw,broadcast:conditions_pooled_raw.npz@7fbfb797,T cell,0.98,0.18575025132194545,0.22974251893661754,0.2077463851292815,True,5755,5823
+imperial_eskd,pooled,pooled,pseudo_full__raw,generated:pseudo_full__raw,B cell,0.98,0.31739976708319567,0.1992917142856745,0.25834574068443505,True,5645,4263
+imperial_eskd,pooled,pooled,pseudo_full__raw,broadcast:conditions_pooled_raw.npz@7fbfb797,B cell,0.98,0.16594807245181317,0.19845485793489823,0.1822014651933557,True,5645,5823
+imperial_eskd,pooled,pooled,pseudo_full__raw,generated:pseudo_full__raw,Monocyte,0.98,0.20448146638073378,0.08523529714488107,0.1448583817628074,True,5631,4358
+imperial_eskd,pooled,pooled,pseudo_full__raw,broadcast:conditions_pooled_raw.npz@7fbfb797,Monocyte,0.98,0.18767760214073972,0.07101896399052536,0.12934828306563254,True,5631,5823
+imperial_eskd,pooled,pooled,pseudo_full__raw,generated:pseudo_full__raw,NK cell,0.98,0.27986209989394206,0.18524556470087405,0.23255383229740806,True,5591,4537
+imperial_eskd,pooled,pooled,pseudo_full__raw,broadcast:conditions_pooled_raw.npz@7fbfb797,NK cell,0.98,0.17629725759418896,0.2123595577649776,0.1943284076795833,True,5591,5823
+imperial_eskd,pooled,pooled,pseudo_full__raw,generated:pseudo_full__raw,DC,0.98,0.08478764139890761,0.21317380430974037,0.14898072285432398,True,5437,3904
+imperial_eskd,pooled,pooled,pseudo_full__raw,broadcast:conditions_pooled_raw.npz@7fbfb797,DC,0.98,0.17079554777486666,0.11450591157079283,0.14265072967282974,True,5437,5823
+imperial_eskd,pooled,pooled,real_lora__raw,generated:real_lora__raw,T cell,0.98,0.40569326780795684,0.2551219269519392,0.330407597379948,True,5755,4722
+imperial_eskd,pooled,pooled,real_lora__raw,broadcast:conditions_pooled_raw.npz@7fbfb797,T cell,0.98,0.18575025132194545,0.22974251893661754,0.2077463851292815,True,5755,5823
+imperial_eskd,pooled,pooled,real_lora__raw,generated:real_lora__raw,B cell,0.98,0.42271229228997137,0.024290282578822726,0.22350128743439704,True,5645,4215
+imperial_eskd,pooled,pooled,real_lora__raw,broadcast:conditions_pooled_raw.npz@7fbfb797,B cell,0.98,0.16594807245181317,0.19845485793489823,0.1822014651933557,True,5645,5823
+imperial_eskd,pooled,pooled,real_lora__raw,generated:real_lora__raw,Monocyte,0.98,0.35556790886226164,0.15376054551154147,0.25466422718690157,True,5631,4096
+imperial_eskd,pooled,pooled,real_lora__raw,broadcast:conditions_pooled_raw.npz@7fbfb797,Monocyte,0.98,0.18767760214073972,0.07101896399052536,0.12934828306563254,True,5631,5823
+imperial_eskd,pooled,pooled,real_lora__raw,generated:real_lora__raw,NK cell,0.98,0.5253660006665455,0.268507137584456,0.39693656912550074,True,5591,4163
+imperial_eskd,pooled,pooled,real_lora__raw,broadcast:conditions_pooled_raw.npz@7fbfb797,NK cell,0.98,0.17629725759418896,0.2123595577649776,0.1943284076795833,True,5591,5823
+imperial_eskd,pooled,pooled,real_lora__raw,generated:real_lora__raw,DC,0.98,0.35546659407408626,0.3069607004652254,0.33121364726965585,True,5437,3836
+imperial_eskd,pooled,pooled,real_lora__raw,broadcast:conditions_pooled_raw.npz@7fbfb797,DC,0.98,0.17079554777486666,0.11450591157079283,0.14265072967282974,True,5437,5823
+imperial_eskd,pooled,pooled,zs__cal,generated:zs__cal,T cell,0.98,0.1835340610510185,0.06370044803480635,0.12361725454291242,True,5755,4812
+imperial_eskd,pooled,pooled,zs__cal,broadcast:conditions_pooled_cal.npz@79135860,T cell,0.98,0.31144239993264694,0.2200057564724045,0.26572407820252575,True,5755,5823
+imperial_eskd,pooled,pooled,zs__cal,generated:zs__cal,B cell,0.98,0.261325416028486,0.1292318872970767,0.19527865166278136,True,5645,4052
+imperial_eskd,pooled,pooled,zs__cal,broadcast:conditions_pooled_cal.npz@79135860,B cell,0.98,0.23721853167462625,0.15781548639125598,0.19751700903294112,True,5645,5823
+imperial_eskd,pooled,pooled,zs__cal,generated:zs__cal,Monocyte,0.98,0.24971457395554397,0.13566226298260914,0.19268841846907656,True,5631,4469
+imperial_eskd,pooled,pooled,zs__cal,broadcast:conditions_pooled_cal.npz@79135860,Monocyte,0.98,0.26228595194444176,0.07433960231981705,0.16831277713212942,True,5631,5823
+imperial_eskd,pooled,pooled,zs__cal,generated:zs__cal,NK cell,0.98,0.3159293115116976,0.23734242440020428,0.27663586795595096,True,5591,4095
+imperial_eskd,pooled,pooled,zs__cal,broadcast:conditions_pooled_cal.npz@79135860,NK cell,0.98,0.25450926025279574,0.20529886219222507,0.2299040612225104,True,5591,5823
+imperial_eskd,pooled,pooled,zs__cal,generated:zs__cal,DC,0.98,0.30676473994529974,0.17536285533325222,0.241063797639276,True,5437,3744
+imperial_eskd,pooled,pooled,zs__cal,broadcast:conditions_pooled_cal.npz@79135860,DC,0.98,0.2542061676082331,0.11545605003926951,0.1848311088237513,True,5437,5823
+imperial_eskd,pooled,pooled,zs__pseudo,generated:zs__pseudo,T cell,0.98,0.32108325304942315,0.15225663188316177,0.23666994246629247,True,5755,4771
+imperial_eskd,pooled,pooled,zs__pseudo,broadcast:conditions_pooled_pseudo.npz@34f4b1ba,T cell,0.98,0.5257509519651382,0.35397928088193986,0.43986511642353904,True,5755,5851
+imperial_eskd,pooled,pooled,zs__pseudo,generated:zs__pseudo,B cell,0.98,0.24767463479494634,0.22331861412470344,0.2354966244598249,True,5645,4054
+imperial_eskd,pooled,pooled,zs__pseudo,broadcast:conditions_pooled_pseudo.npz@34f4b1ba,B cell,0.98,0.4549234337390199,0.1963368081580748,0.3256301209485474,True,5645,5851
+imperial_eskd,pooled,pooled,zs__pseudo,generated:zs__pseudo,Monocyte,0.98,0.3365473334683838,0.180578585539865,0.2585629595041244,True,5631,4360
+imperial_eskd,pooled,pooled,zs__pseudo,broadcast:conditions_pooled_pseudo.npz@34f4b1ba,Monocyte,0.98,0.349347779866988,0.17186263022888684,0.26060520504793744,True,5631,5851
+imperial_eskd,pooled,pooled,zs__pseudo,generated:zs__pseudo,NK cell,0.98,0.3413541669370233,0.24309554327340913,0.29222485510521623,True,5591,4157
+imperial_eskd,pooled,pooled,zs__pseudo,broadcast:conditions_pooled_pseudo.npz@34f4b1ba,NK cell,0.98,0.49481584237552584,0.3503810523554965,0.42259844736551117,True,5591,5851
+imperial_eskd,pooled,pooled,zs__pseudo,generated:zs__pseudo,DC,0.98,0.23745005202524652,0.21430875707313277,0.22587940454918964,True,5437,3645
+imperial_eskd,pooled,pooled,zs__pseudo,broadcast:conditions_pooled_pseudo.npz@34f4b1ba,DC,0.98,0.43447261320191083,0.27520781719176335,0.35484021519683706,True,5437,5851
+imperial_eskd,pooled,pooled,zs__raw,generated:zs__raw,T cell,0.98,0.2054121836155527,0.1641951061524673,0.18480364488401,True,5755,4908
+imperial_eskd,pooled,pooled,zs__raw,broadcast:conditions_pooled_raw.npz@7fbfb797,T cell,0.98,0.18575025132194545,0.22974251893661754,0.2077463851292815,True,5755,5823
+imperial_eskd,pooled,pooled,zs__raw,generated:zs__raw,B cell,0.98,0.3834154774281316,0.12018176488967201,0.2517986211589018,True,5645,4315
+imperial_eskd,pooled,pooled,zs__raw,broadcast:conditions_pooled_raw.npz@7fbfb797,B cell,0.98,0.16594807245181317,0.19845485793489823,0.1822014651933557,True,5645,5823
+imperial_eskd,pooled,pooled,zs__raw,generated:zs__raw,Monocyte,0.98,0.23528025620680054,0.1288726559575156,0.18207645608215806,True,5631,5028
+imperial_eskd,pooled,pooled,zs__raw,broadcast:conditions_pooled_raw.npz@7fbfb797,Monocyte,0.98,0.18767760214073972,0.07101896399052536,0.12934828306563254,True,5631,5823
+imperial_eskd,pooled,pooled,zs__raw,generated:zs__raw,NK cell,0.98,0.32182700101629974,0.09551953743368516,0.20867326922499246,True,5591,4452
+imperial_eskd,pooled,pooled,zs__raw,broadcast:conditions_pooled_raw.npz@7fbfb797,NK cell,0.98,0.17629725759418896,0.2123595577649776,0.1943284076795833,True,5591,5823
+imperial_eskd,pooled,pooled,zs__raw,generated:zs__raw,DC,0.98,0.15677722778091718,0.2123059989954559,0.18454161338818653,True,5437,3957
+imperial_eskd,pooled,pooled,zs__raw,broadcast:conditions_pooled_raw.npz@7fbfb797,DC,0.98,0.17079554777486666,0.11450591157079283,0.14265072967282974,True,5437,5823

paper-releases/pbisc-diffusion/updates/20261013T115045Z-figure-strengthening-154/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/strengthening_20261013/disease_metrics/source_snapshot/plans/paired_finetune_intradataset_20260927/scores_contrast/imperial_eskd/scsemi_cv_20261002/pooled/cat.csv

@@ -0,0 +1,61 @@
+dataset,design,unit,arm,predictor,celltype,k,k_eff,cat_same_sign,cat_any_sign,chance_same_sign,chance_any_sign,G_both,pred_defined,n_tested_obs,n_tested_pred
+imperial_eskd,scored,scsemi_cv_20261002/pooled,scsemi__raw,generated:scsemi__raw,T cell,10,10,0.0,0.0,0.001223091976516634,0.002446183953033268,4088,True,5755,4088
+imperial_eskd,scored,scsemi_cv_20261002/pooled,scsemi__raw,generated:scsemi__raw,T cell,20,20,0.0,0.0,0.002446183953033268,0.004892367906066536,4088,True,5755,4088
+imperial_eskd,scored,scsemi_cv_20261002/pooled,scsemi__raw,generated:scsemi__raw,T cell,50,50,0.16,0.16,0.00611545988258317,0.01223091976516634,4088,True,5755,4088
+imperial_eskd,scored,scsemi_cv_20261002/pooled,scsemi__raw,generated:scsemi__raw,T cell,100,100,0.23,0.23,0.01223091976516634,0.02446183953033268,4088,True,5755,4088
+imperial_eskd,scored,scsemi_cv_20261002/pooled,scsemi__raw,generated:scsemi__raw,T cell,200,200,0.285,0.285,0.02446183953033268,0.04892367906066536,4088,True,5755,4088
+imperial_eskd,scored,scsemi_cv_20261002/pooled,scsemi__raw,generated:scsemi__raw,T cell,500,500,0.274,0.288,0.0611545988258317,0.1223091976516634,4088,True,5755,4088
+imperial_eskd,scored,scsemi_cv_20261002/pooled,scsemi__raw,broadcast:conditions_pooled_raw.npz@7fbfb797,T cell,10,10,0.0,0.0,0.000884016973125884,0.001768033946251768,5656,True,5755,5823
+imperial_eskd,scored,scsemi_cv_20261002/pooled,scsemi__raw,broadcast:conditions_pooled_raw.npz@7fbfb797,T cell,20,20,0.1,0.1,0.001768033946251768,0.003536067892503536,5656,True,5755,5823
+imperial_eskd,scored,scsemi_cv_20261002/pooled,scsemi__raw,broadcast:conditions_pooled_raw.npz@7fbfb797,T cell,50,50,0.2,0.2,0.00442008486562942,0.00884016973125884,5656,True,5755,5823
+imperial_eskd,scored,scsemi_cv_20261002/pooled,scsemi__raw,broadcast:conditions_pooled_raw.npz@7fbfb797,T cell,100,100,0.25,0.25,0.00884016973125884,0.01768033946251768,5656,True,5755,5823
+imperial_eskd,scored,scsemi_cv_20261002/pooled,scsemi__raw,broadcast:conditions_pooled_raw.npz@7fbfb797,T cell,200,200,0.315,0.315,0.01768033946251768,0.03536067892503536,5656,True,5755,5823
+imperial_eskd,scored,scsemi_cv_20261002/pooled,scsemi__raw,broadcast:conditions_pooled_raw.npz@7fbfb797,T cell,500,500,0.346,0.35,0.0442008486562942,0.0884016973125884,5656,True,5755,5823
+imperial_eskd,scored,scsemi_cv_20261002/pooled,scsemi__raw,generated:scsemi__raw,B cell,10,10,0.1,0.1,0.0017129153819801302,0.0034258307639602604,2919,True,5645,2919
+imperial_eskd,scored,scsemi_cv_20261002/pooled,scsemi__raw,generated:scsemi__raw,B cell,20,20,0.15,0.15,0.0034258307639602604,0.006851661527920521,2919,True,5645,2919
+imperial_eskd,scored,scsemi_cv_20261002/pooled,scsemi__raw,generated:scsemi__raw,B cell,50,50,0.18,0.18,0.00856457690990065,0.0171291538198013,2919,True,5645,2919
+imperial_eskd,scored,scsemi_cv_20261002/pooled,scsemi__raw,generated:scsemi__raw,B cell,100,100,0.12,0.12,0.0171291538198013,0.0342583076396026,2919,True,5645,2919
+imperial_eskd,scored,scsemi_cv_20261002/pooled,scsemi__raw,generated:scsemi__raw,B cell,200,200,0.1,0.105,0.0342583076396026,0.0685166152792052,2919,True,5645,2919
+imperial_eskd,scored,scsemi_cv_20261002/pooled,scsemi__raw,generated:scsemi__raw,B cell,500,500,0.12,0.142,0.08564576909900651,0.17129153819801302,2919,True,5645,2919
+imperial_eskd,scored,scsemi_cv_20261002/pooled,scsemi__raw,broadcast:conditions_pooled_raw.npz@7fbfb797,B cell,10,10,0.1,0.1,0.0009012256669069935,0.001802451333813987,5548,True,5645,5823
+imperial_eskd,scored,scsemi_cv_20261002/pooled,scsemi__raw,broadcast:conditions_pooled_raw.npz@7fbfb797,B cell,20,20,0.1,0.1,0.001802451333813987,0.003604902667627974,5548,True,5645,5823
+imperial_eskd,scored,scsemi_cv_20261002/pooled,scsemi__raw,broadcast:conditions_pooled_raw.npz@7fbfb797,B cell,50,50,0.18,0.18,0.004506128334534967,0.009012256669069935,5548,True,5645,5823
+imperial_eskd,scored,scsemi_cv_20261002/pooled,scsemi__raw,broadcast:conditions_pooled_raw.npz@7fbfb797,B cell,100,100,0.22,0.22,0.009012256669069935,0.01802451333813987,5548,True,5645,5823
+imperial_eskd,scored,scsemi_cv_20261002/pooled,scsemi__raw,broadcast:conditions_pooled_raw.npz@7fbfb797,B cell,200,200,0.24,0.24,0.01802451333813987,0.03604902667627974,5548,True,5645,5823
+imperial_eskd,scored,scsemi_cv_20261002/pooled,scsemi__raw,broadcast:conditions_pooled_raw.npz@7fbfb797,B cell,500,500,0.244,0.246,0.04506128334534967,0.09012256669069935,5548,True,5645,5823
+imperial_eskd,scored,scsemi_cv_20261002/pooled,scsemi__raw,generated:scsemi__raw,Monocyte,10,10,0.1,0.1,0.0021777003484320556,0.004355400696864111,2296,True,5631,2297
+imperial_eskd,scored,scsemi_cv_20261002/pooled,scsemi__raw,generated:scsemi__raw,Monocyte,20,20,0.15,0.15,0.004355400696864111,0.008710801393728223,2296,True,5631,2297
+imperial_eskd,scored,scsemi_cv_20261002/pooled,scsemi__raw,generated:scsemi__raw,Monocyte,50,50,0.16,0.16,0.01088850174216028,0.02177700348432056,2296,True,5631,2297
+imperial_eskd,scored,scsemi_cv_20261002/pooled,scsemi__raw,generated:scsemi__raw,Monocyte,100,100,0.2,0.2,0.02177700348432056,0.04355400696864112,2296,True,5631,2297
+imperial_eskd,scored,scsemi_cv_20261002/pooled,scsemi__raw,generated:scsemi__raw,Monocyte,200,200,0.235,0.24,0.04355400696864112,0.08710801393728224,2296,True,5631,2297
+imperial_eskd,scored,scsemi_cv_20261002/pooled,scsemi__raw,generated:scsemi__raw,Monocyte,500,500,0.246,0.272,0.10888501742160278,0.21777003484320556,2296,True,5631,2297
+imperial_eskd,scored,scsemi_cv_20261002/pooled,scsemi__raw,broadcast:conditions_pooled_raw.npz@7fbfb797,Monocyte,10,10,0.0,0.0,0.0009031791907514451,0.0018063583815028901,5536,True,5631,5823
+imperial_eskd,scored,scsemi_cv_20261002/pooled,scsemi__raw,broadcast:conditions_pooled_raw.npz@7fbfb797,Monocyte,20,20,0.05,0.05,0.0018063583815028901,0.0036127167630057803,5536,True,5631,5823
+imperial_eskd,scored,scsemi_cv_20261002/pooled,scsemi__raw,broadcast:conditions_pooled_raw.npz@7fbfb797,Monocyte,50,50,0.14,0.14,0.004515895953757226,0.009031791907514452,5536,True,5631,5823
+imperial_eskd,scored,scsemi_cv_20261002/pooled,scsemi__raw,broadcast:conditions_pooled_raw.npz@7fbfb797,Monocyte,100,100,0.22,0.22,0.009031791907514452,0.018063583815028903,5536,True,5631,5823
+imperial_eskd,scored,scsemi_cv_20261002/pooled,scsemi__raw,broadcast:conditions_pooled_raw.npz@7fbfb797,Monocyte,200,200,0.255,0.255,0.018063583815028903,0.036127167630057806,5536,True,5631,5823
+imperial_eskd,scored,scsemi_cv_20261002/pooled,scsemi__raw,broadcast:conditions_pooled_raw.npz@7fbfb797,Monocyte,500,500,0.274,0.28,0.045158959537572256,0.09031791907514451,5536,True,5631,5823
+imperial_eskd,scored,scsemi_cv_20261002/pooled,scsemi__raw,generated:scsemi__raw,NK cell,10,10,0.0,0.0,0.001504664459825459,0.003009328919650918,3323,True,5591,3323
+imperial_eskd,scored,scsemi_cv_20261002/pooled,scsemi__raw,generated:scsemi__raw,NK cell,20,20,0.2,0.2,0.003009328919650918,0.006018657839301836,3323,True,5591,3323
+imperial_eskd,scored,scsemi_cv_20261002/pooled,scsemi__raw,generated:scsemi__raw,NK cell,50,50,0.36,0.36,0.007523322299127295,0.01504664459825459,3323,True,5591,3323
+imperial_eskd,scored,scsemi_cv_20261002/pooled,scsemi__raw,generated:scsemi__raw,NK cell,100,100,0.35,0.35,0.01504664459825459,0.03009328919650918,3323,True,5591,3323
+imperial_eskd,scored,scsemi_cv_20261002/pooled,scsemi__raw,generated:scsemi__raw,NK cell,200,200,0.335,0.335,0.03009328919650918,0.06018657839301836,3323,True,5591,3323
+imperial_eskd,scored,scsemi_cv_20261002/pooled,scsemi__raw,generated:scsemi__raw,NK cell,500,500,0.232,0.246,0.07523322299127294,0.15046644598254588,3323,True,5591,3323
+imperial_eskd,scored,scsemi_cv_20261002/pooled,scsemi__raw,broadcast:conditions_pooled_raw.npz@7fbfb797,NK cell,10,10,0.2,0.2,0.0009100837277029487,0.0018201674554058974,5494,True,5591,5823
+imperial_eskd,scored,scsemi_cv_20261002/pooled,scsemi__raw,broadcast:conditions_pooled_raw.npz@7fbfb797,NK cell,20,20,0.15,0.15,0.0018201674554058974,0.0036403349108117948,5494,True,5591,5823
+imperial_eskd,scored,scsemi_cv_20261002/pooled,scsemi__raw,broadcast:conditions_pooled_raw.npz@7fbfb797,NK cell,50,50,0.18,0.18,0.004550418638514743,0.009100837277029487,5494,True,5591,5823
+imperial_eskd,scored,scsemi_cv_20261002/pooled,scsemi__raw,broadcast:conditions_pooled_raw.npz@7fbfb797,NK cell,100,100,0.21,0.21,0.009100837277029487,0.018201674554058973,5494,True,5591,5823
+imperial_eskd,scored,scsemi_cv_20261002/pooled,scsemi__raw,broadcast:conditions_pooled_raw.npz@7fbfb797,NK cell,200,200,0.31,0.31,0.018201674554058973,0.03640334910811795,5494,True,5591,5823
+imperial_eskd,scored,scsemi_cv_20261002/pooled,scsemi__raw,broadcast:conditions_pooled_raw.npz@7fbfb797,NK cell,500,500,0.346,0.352,0.04550418638514744,0.09100837277029487,5494,True,5591,5823
+imperial_eskd,scored,scsemi_cv_20261002/pooled,scsemi__raw,generated:scsemi__raw,DC,10,10,0.0,0.0,0.00275178866263071,0.00550357732526142,1817,True,5437,1818
+imperial_eskd,scored,scsemi_cv_20261002/pooled,scsemi__raw,generated:scsemi__raw,DC,20,20,0.25,0.25,0.00550357732526142,0.01100715465052284,1817,True,5437,1818
+imperial_eskd,scored,scsemi_cv_20261002/pooled,scsemi__raw,generated:scsemi__raw,DC,50,50,0.14,0.14,0.01375894331315355,0.0275178866263071,1817,True,5437,1818
+imperial_eskd,scored,scsemi_cv_20261002/pooled,scsemi__raw,generated:scsemi__raw,DC,100,100,0.15,0.15,0.0275178866263071,0.0550357732526142,1817,True,5437,1818
+imperial_eskd,scored,scsemi_cv_20261002/pooled,scsemi__raw,generated:scsemi__raw,DC,200,200,0.19,0.195,0.0550357732526142,0.1100715465052284,1817,True,5437,1818
+imperial_eskd,scored,scsemi_cv_20261002/pooled,scsemi__raw,generated:scsemi__raw,DC,500,500,0.17,0.204,0.1375894331315355,0.275178866263071,1817,True,5437,1818
+imperial_eskd,scored,scsemi_cv_20261002/pooled,scsemi__raw,broadcast:conditions_pooled_raw.npz@7fbfb797,DC,10,10,0.1,0.1,0.0009356287425149701,0.0018712574850299401,5344,True,5437,5823
+imperial_eskd,scored,scsemi_cv_20261002/pooled,scsemi__raw,broadcast:conditions_pooled_raw.npz@7fbfb797,DC,20,20,0.05,0.05,0.0018712574850299401,0.0037425149700598802,5344,True,5437,5823
+imperial_eskd,scored,scsemi_cv_20261002/pooled,scsemi__raw,broadcast:conditions_pooled_raw.npz@7fbfb797,DC,50,50,0.14,0.14,0.00467814371257485,0.0093562874251497,5344,True,5437,5823
+imperial_eskd,scored,scsemi_cv_20261002/pooled,scsemi__raw,broadcast:conditions_pooled_raw.npz@7fbfb797,DC,100,100,0.17,0.17,0.0093562874251497,0.0187125748502994,5344,True,5437,5823
+imperial_eskd,scored,scsemi_cv_20261002/pooled,scsemi__raw,broadcast:conditions_pooled_raw.npz@7fbfb797,DC,200,200,0.225,0.225,0.0187125748502994,0.0374251497005988,5344,True,5437,5823
+imperial_eskd,scored,scsemi_cv_20261002/pooled,scsemi__raw,broadcast:conditions_pooled_raw.npz@7fbfb797,DC,500,500,0.258,0.26,0.046781437125748504,0.09356287425149701,5344,True,5437,5823