Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261015T141849Z-rare-cell-7k-8k-panels/diffusion/dataset/server_1/model8/plans/rare_gene_context_expansion_20261015/coordination/ilc_training_support/marker_support_overall.csv

@@ -0,0 +1,49 @@
+gene_id,gene_symbol,raw_panel_position,source_labelled_ilc_cells,measured_eligible_cells,unmeasured_cells,detected_cells,detection_fraction_among_measured,total_raw_counts,mean_raw_counts_among_measured,measured_dataset_scoped_donors,detected_dataset_scoped_donors,measured_samples,detected_samples,sentinel,in_final6k,in_7k,in_8k,measured_corrected_dataset_scoped_donors,detected_corrected_dataset_scoped_donors,measured_datasets,detected_datasets
+ENSG00000162594,IL23R,782,16439,16439,0,298,0.0181276233347527,441,0.0268264492974025,938,161,2417,229,True,True,True,True,937.0,161.0,12.0,9.0
+ENSG00000081985,IL12RB2,783,16439,16439,0,404,0.0245757041182553,790,0.048056451122331,938,146,2417,275,False,True,True,True,937.0,146.0,12.0,10.0
+ENSG00000143365,RORC,1202,16439,16439,0,567,0.0344911490966603,1023,0.0622300626558793,938,269,2417,341,True,True,True,True,937.0,269.0,12.0,11.0
+ENSG00000198821,CD247,1522,16439,16439,0,3952,0.2404039175132307,11231,0.6831924082973417,938,589,2417,1578,False,True,True,True,937.0,589.0,12.0,12.0
+ENSG00000117586,TNFSF4,1568,16439,16439,0,800,0.0486647606302086,1032,0.0627775412129691,938,268,2417,519,True,True,True,True,937.0,268.0,12.0,12.0
+ENSG00000115738,ID2,2088,16439,16439,0,5760,0.3503862765375022,16413,0.9984183952795184,938,772,2417,1440,False,True,True,True,937.0,771.0,12.0,12.0
+ENSG00000115523,GNLY,2510,16439,16439,0,3444,0.2095017945130482,42628,2.593101770180668,938,629,2417,1253,False,True,True,True,937.0,629.0,12.0,12.0
+ENSG00000115594,IL1R1,2613,16439,16439,0,4161,0.2531175862278727,8780,0.5340957479165399,938,432,2417,1310,False,True,True,True,937.0,432.0,12.0,12.0
+ENSG00000115602,IL1RL1,2615,16439,16439,0,1880,0.1143621874809903,4309,0.2621205669444613,938,17,2417,587,True,True,True,True,937.0,17.0,12.0,4.0
+ENSG00000115604,IL18R1,2616,16439,16439,0,6497,0.395218687268082,12120,0.737271123547661,938,545,2417,1738,False,True,True,True,937.0,545.0,12.0,11.0
+ENSG00000115607,IL18RAP,2617,16439,16439,0,2451,0.1490966603808017,3967,0.2413163817750471,938,404,2417,1039,False,True,True,True,937.0,404.0,12.0,12.0
+ENSG00000163600,ICOS,3038,16439,16439,0,623,0.0378976823407749,927,0.0563902913802542,938,182,2417,435,False,True,True,True,937.0,182.0,12.0,10.0
+ENSG00000132170,PPARG,3376,16439,16439,0,89,0.0054139546201107,299,0.0181884542855404,938,31,2417,70,True,True,True,True,937.0,31.0,12.0,7.0
+ENSG00000163508,EOMES,3440,16439,16439,0,340,0.0206825232678386,444,0.0270089421497658,938,169,2417,251,False,True,True,True,937.0,169.0,12.0,10.0
+ENSG00000172215,CXCR6,3561,16439,16439,0,62,0.0037715189488411,106,0.0064480807835026,938,43,2417,52,False,True,True,True,937.0,43.0,12.0,10.0
+ENSG00000056736,IL17RB,3739,16439,16439,0,176,0.0107062473386459,503,0.0305979682462436,938,50,2417,142,True,True,True,True,937.0,50.0,12.0,8.0
+ENSG00000157404,KIT,4647,16439,16439,0,4289,0.2609039479287061,7994,0.4862826205973599,938,558,2417,1210,False,True,True,True,937.0,558.0,12.0,12.0
+ENSG00000109321,AREG,4743,16439,16439,0,1106,0.0672790315712634,2353,0.1431352272036012,938,414,2417,623,True,True,True,True,937.0,414.0,12.0,12.0
+ENSG00000168685,IL7R,5266,16439,16439,0,9318,0.5668227994403553,64980,3.9527951821886975,938,837,2417,1937,False,True,True,True,937.0,836.0,12.0,12.0
+ENSG00000164400,CSF2,5606,16439,16439,0,113,0.0068738974390169,387,0.0235415779548634,938,82,2417,97,True,False,True,True,937.0,82.0,12.0,12.0
+ENSG00000113525,IL5,5613,16439,16354,85,19,0.0011617952794423,317,0.0193836370306958,932,10,2400,17,True,False,True,True,931.0,10.0,11.0,5.0
+ENSG00000169194,IL13,5615,16439,16354,85,46,0.0028127675186498,333,0.0203619909502262,932,17,2400,40,True,False,True,True,931.0,17.0,11.0,5.0
+ENSG00000081059,TCF7,5631,16439,16439,0,7148,0.4348196362309143,27744,1.687693898655636,938,743,2417,1748,False,True,True,True,937.0,743.0,12.0,12.0
+ENSG00000096264,NCR2,6526,16439,16354,85,9,0.0005503240797358,12,0.0007337654396477,932,8,2400,9,True,False,True,True,931.0,8.0,11.0,4.0
+ENSG00000112115,IL17A,6637,16439,16354,85,0,0.0,0,0.0,932,0,2400,0,True,False,True,True,931.0,0.0,11.0,0.0
+ENSG00000112116,IL17F,6638,16439,16354,85,2,0.0001222942399412,35,0.0021401491989727,932,2,2400,2,True,False,True,True,931.0,2.0,11.0,2.0
+ENSG00000112486,CCR6,7083,16439,16439,0,539,0.032787882474603,744,0.045258227386094,938,244,2417,341,True,True,True,True,937.0,244.0,12.0,12.0
+ENSG00000106546,AHR,7206,16439,16439,0,3200,0.1946590425208346,5945,0.361640002433238,938,522,2417,1284,True,True,True,True,937.0,521.0,12.0,12.0
+ENSG00000134460,IL2RA,9547,16439,16439,0,6518,0.3964961372346249,14568,0.8861852910760996,938,557,2417,1697,False,True,True,True,937.0,557.0,12.0,12.0
+ENSG00000107485,GATA3,9557,16439,16439,0,4774,0.2904069590607701,11638,0.7079506052679604,938,709,2417,1420,False,True,True,True,937.0,709.0,12.0,12.0
+ENSG00000180644,PRF1,9805,16439,16439,0,3406,0.2071902183831133,6323,0.3846341018310116,938,539,2417,1088,False,True,True,True,937.0,538.0,12.0,12.0
+ENSG00000183134,PTGDR2,10842,16439,16439,0,518,0.0315104325080601,1052,0.0639941602287243,938,201,2417,354,False,False,True,True,937.0,201.0,12.0,11.0
+ENSG00000109906,ZBTB16,11377,16439,16439,0,2159,0.1313340227507756,5062,0.3079262728876452,938,501,2417,898,False,True,True,True,937.0,501.0,12.0,12.0
+ENSG00000198851,CD3E,11414,16439,16439,0,1761,0.1071233043372467,2963,0.1802421071841352,938,436,2417,951,False,True,True,True,937.0,436.0,12.0,12.0
+ENSG00000167286,CD3D,11415,16439,16439,0,639,0.0388709775533791,973,0.0591885151164912,938,260,2417,487,False,True,True,True,937.0,260.0,12.0,12.0
+ENSG00000111796,KLRB1,11693,16439,16439,0,7389,0.4494798953707646,40967,2.492061560922197,938,894,2417,1549,False,True,True,True,937.0,894.0,12.0,12.0
+ENSG00000134539,KLRD1,11709,16439,16439,0,1838,0.1118072875479043,4753,0.2891295090942271,938,404,2417,950,False,True,True,True,937.0,404.0,12.0,12.0
+ENSG00000127318,IL22,12213,16439,16354,85,1,6.114711997064938e-05,1,6.114711997064938e-05,932,1,2400,1,True,False,True,True,931.0,1.0,11.0,1.0
+ENSG00000120659,TNFSF11,12726,16439,16439,0,1464,0.0890565119532818,2767,0.1683192408297341,938,217,2417,786,True,True,True,True,937.0,217.0,12.0,12.0
+ENSG00000100453,GZMB,13084,16439,16439,0,400,0.0243323803151043,1233,0.075004562321309,938,198,2417,277,False,True,True,True,937.0,198.0,12.0,12.0
+ENSG00000127152,BCL11B,13473,16439,16439,0,1891,0.1150313279396557,6197,0.3769694020317538,938,279,2417,822,False,True,True,True,937.0,279.0,12.0,12.0
+ENSG00000069667,RORA,13841,16439,16439,0,2375,0.1444735081209319,7814,0.475333049455563,938,446,2417,1075,False,True,True,True,937.0,446.0,12.0,12.0
+ENSG00000073861,TBX21,15769,16439,16439,0,399,0.0242715493643165,528,0.0321187420159377,938,209,2417,294,False,True,True,True,937.0,208.0,12.0,11.0
+ENSG00000096996,IL12RB1,17004,16439,16439,0,1063,0.0646633006873897,1223,0.0743962528134314,938,324,2417,659,False,False,False,True,937.0,323.0,12.0,12.0
+ENSG00000105374,NKG7,17689,16439,16439,0,2207,0.1342539083885881,8237,0.5010645416387858,938,559,2417,1041,False,True,True,True,937.0,558.0,12.0,12.0
+ENSG00000189430,NCR1,17794,16439,16439,0,935,0.0568769389865563,1160,0.0705639029138025,938,306,2417,506,False,True,True,True,937.0,306.0,12.0,12.0
+ENSG00000205755,CRLF2,19160,16439,8954,7485,57,0.0063658700022336,68,0.0075943712307348,928,46,1542,46,False,False,False,True,927.0,46.0,11.0,6.0
+ENSG00000292363,CRLF2,20027,16439,7485,8954,655,0.0875083500334001,1122,0.1498997995991983,10,10,875,337,False,True,True,True,10.0,10.0,1.0,1.0

paper-releases/pbisc-diffusion/updates/20261015T141849Z-rare-cell-7k-8k-panels/diffusion/dataset/server_1/model8/plans/rare_gene_context_expansion_20261015/coordination/ilc_training_support/native_depth_support.csv

@@ -0,0 +1,14 @@
+dataset_id,cells,dataset_scoped_source_donor_ids,samples,canonical_count_q0.0,canonical_count_q0.1,canonical_count_q0.25,canonical_count_q0.5,canonical_count_q0.75,canonical_count_q0.9,canonical_count_q1.0
+ALL,16439,938,2417,390.0,965.0,1610.0,2607.0,3598.0,4868.200000000001,28863.0
+005_A_collection_dde06e0f-ab3b-46be-96a2-a8082383c4_OneK1K_Yazar_et_al._single-cell_eQTL_mapping,350,245,245,669.0,1085.3,1501.0,2055.0,2979.25,4077.000000000001,13341.0
+006_A_collection_ced320a1-29f3-47c1-a735-513c7084d5_AIDA_Asian_Immune_Diversity_Atlas,556,278,278,2014.0,3028.0,3757.0,5019.0,6186.25,7580.0,11405.0
+009_A_Human_Immune_Health_Atlas_Human_Immune_Health_Atlas_AIFI_immune_dynamics_across_healthy_age,661,85,85,475.0,2079.0,2437.0,3029.0,3641.0,4381.0,9925.0
+010_A_collection_4a9fd4d7-d870-4265-89a5-ad51ab811d_ScaleBio_single-cell_RNA_sequencing_of_human_PBMCs,631,1,1,874.0,1998.0,2479.5,3311.0,5009.0,8684.0,16656.0
+053_B_collection_b0cf0afa-ec40-4d65-b570-ed4ceacc68_Integrated_analysis_of_multimodal_single-cell_data_CITE-seq_PBMC,85,6,17,2265.0,3049.6,3504.0,4460.0,5580.0,6636.200000000001,13384.0
+065_A_GSE271896_GSE271896_Sound_Life_deep_longitudinal_immune_profiling,4616,77,678,487.0,1951.5,2400.0,2981.5,3631.25,4456.0,19262.0
+093_C_Local_and_systemic_SARS-CoV-2_response_CELLxG_Local_and_systemic_SARS-CoV-2_response_CELLxGENE,310,50,52,493.0,1192.1,1793.75,2337.0,3033.5,4466.100000000001,9137.0
+200_A_GSE275067_Immunobiology_of_Aging_Cohort_PBMC_Profiling,1671,177,177,591.0,2270.0,2947.0,3559.0,4363.5,5375.0,9731.0
+300b_A_GSE132802_DRESS_DiHS_PBMC_only_scRNAseq,9,3,3,3024.0,3140.8,5268.0,8605.0,17097.0,18308.4,19314.0
+301_A_GSE163121_SLE_healthy_Bcell_PBMC_scRNAseq,21,3,3,1745.0,2162.0,2616.0,3660.0,3829.0,6106.0,7660.0
+302_A_GSE314010_SLE_IL36_stim_PBMC_scRNAseq,44,3,3,946.0,2265.4,3231.5,3903.5,5386.75,7488.000000000002,15828.0
+304_A_Parse_10M_PBMC_12donor_90cytokines,7485,10,875,390.0,740.4000000000001,1050.0,1654.0,2654.0,4039.6,28863.0