Archive 4 checkpoints (1-4)
Browse files- paper-releases/pbisc-diffusion/updates/20261008T050202Z-scsemi-imperial-deck/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores/imperial_eskd/scsemi_cv_20261002/fold2/summary.json +549 -0
- paper-releases/pbisc-diffusion/updates/20261008T050202Z-scsemi-imperial-deck/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores/imperial_eskd/scsemi_cv_20261002/fold3/arms/scsemi__raw/deg_top50_lists.csv +2 -0
- paper-releases/pbisc-diffusion/updates/20261008T050202Z-scsemi-imperial-deck/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores/imperial_eskd/scsemi_cv_20261002/fold3/arms/scsemi__raw/generated_cells.parquet +3 -0
- paper-releases/pbisc-diffusion/updates/20261008T050202Z-scsemi-imperial-deck/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores/imperial_eskd/scsemi_cv_20261002/fold3/arms/scsemi__raw/labels/labels.manifest.json +156 -0
paper-releases/pbisc-diffusion/updates/20261008T050202Z-scsemi-imperial-deck/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores/imperial_eskd/scsemi_cv_20261002/fold2/summary.json
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| 1 |
+
{
|
| 2 |
+
"schema": "paired_ft_scores.v1",
|
| 3 |
+
"dataset": "imperial_eskd",
|
| 4 |
+
"written_utc": "2026-10-08T04:47:00.580713+00:00",
|
| 5 |
+
"command": [
|
| 6 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/score_ft.py",
|
| 7 |
+
"--dataset",
|
| 8 |
+
"imperial_eskd",
|
| 9 |
+
"--out",
|
| 10 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/imperial_eskd/scsemi_cv_20261002/fold2",
|
| 11 |
+
"--threads",
|
| 12 |
+
"8",
|
| 13 |
+
"--arm",
|
| 14 |
+
"scsemi__raw=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/imperial_eskd/fold2/scsemi__raw.npz",
|
| 15 |
+
"--case-groups",
|
| 16 |
+
"covid_positive",
|
| 17 |
+
"--control-groups",
|
| 18 |
+
"covid_negative"
|
| 19 |
+
],
|
| 20 |
+
"arms": [
|
| 21 |
+
"scsemi__raw"
|
| 22 |
+
],
|
| 23 |
+
"donors": [
|
| 24 |
+
"C31_1304",
|
| 25 |
+
"C31_2004",
|
| 26 |
+
"C31_2704",
|
| 27 |
+
"C33_1401",
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| 28 |
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"C33_1601",
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| 29 |
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"C33_1901",
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| 30 |
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"C103_2204",
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| 31 |
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"C124_2404",
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| 32 |
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"C124_2704",
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| 33 |
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"C124_0105",
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| 34 |
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"C128_2504",
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| 35 |
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"C128_0405",
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| 36 |
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"C128_1105",
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| 37 |
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"C137_3004",
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| 38 |
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"C137_2502",
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| 39 |
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"C140_3004",
|
| 40 |
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"C140_2801",
|
| 41 |
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"C140_3001",
|
| 42 |
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"C140_0202",
|
| 43 |
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"C140_0402",
|
| 44 |
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"C140_0602",
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| 45 |
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"C140_0902",
|
| 46 |
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"C140_1103",
|
| 47 |
+
"C147_3004",
|
| 48 |
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"C147_1401",
|
| 49 |
+
"C147_1901",
|
| 50 |
+
"C167_1205",
|
| 51 |
+
"C193_2605",
|
| 52 |
+
"C246_2905"
|
| 53 |
+
],
|
| 54 |
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"n_donors": 29,
|
| 55 |
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"reference": {
|
| 56 |
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"cache": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scoring_cache/imperial_eskd",
|
| 57 |
+
"reference_sha256": "34b4caa3f8a60b46d5faf58f09cdaa5622bcce19e4c45d9902a711fead96375e",
|
| 58 |
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"features_sha256": "e46e5bb1a24eae045efe75125d20e3accaa8f68a1006eb2f60d24159013d4aa7",
|
| 59 |
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"n_r1_cells": 4313,
|
| 60 |
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"pca": {
|
| 61 |
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"n_components": 50,
|
| 62 |
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"explained_variance_ratio_sum": 0.26743191480636597,
|
| 63 |
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"n_fit_cells": 4313
|
| 64 |
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},
|
| 65 |
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"r2_control": {
|
| 66 |
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"precision": 0.997681428240204,
|
| 67 |
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"coverage": 1.0,
|
| 68 |
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"density": 2.4123348017621145,
|
| 69 |
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"n_query": 4313,
|
| 70 |
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"depth_matched": {
|
| 71 |
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"precision": 0.9972177138882449,
|
| 72 |
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"coverage": 1.0,
|
| 73 |
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"density": 2.3827498261071183
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| 74 |
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}
|
| 75 |
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},
|
| 76 |
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"observed_l1_loo_null_mean": 0.5549062891012635
|
| 77 |
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},
|
| 78 |
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"contrast_definition": {
|
| 79 |
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"enabled": true,
|
| 80 |
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"rule": "explicit --case-groups / --control-groups",
|
| 81 |
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"group_source": "features groups",
|
| 82 |
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"case_groups": [
|
| 83 |
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"covid_positive"
|
| 84 |
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],
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| 85 |
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"control_groups": [
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| 86 |
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"covid_negative"
|
| 87 |
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],
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| 88 |
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"n_case_donors": 20,
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| 89 |
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"n_control_donors": 7,
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| 90 |
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"n_donors_in_neither": 2,
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| 91 |
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"case": [
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| 92 |
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true,
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| 93 |
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| 94 |
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| 120 |
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| 121 |
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],
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| 122 |
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"ctrl": [
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| 123 |
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