Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261001T023742Z-deck-calibration-giroux-sexgenes/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/data/sex_linked_genes/chrY_nonPAR_genes.csv

@@ -0,0 +1,44 @@
+gene_id,symbol,chromosome,reason,start,end,tukiainen_status,tukiainen_region,tukiainen_mapped_by
+ENSG00000184895,SRY,chrY,chrY non-PAR,2786855,2787682,,,
+ENSG00000129824,RPS4Y1,chrY,chrY non-PAR,2841402,2932000,,,
+ENSG00000067646,ZFY,chrY,chrY non-PAR,2935201,2982579,,,
+ENSG00000176679,TGIF2LY,chrY,chrY non-PAR,3579067,3580041,,,
+ENSG00000099715,PCDH11Y,chrY,chrY non-PAR,5000085,5742224,,,
+ENSG00000168757,TSPY2,chrY,chrY non-PAR,6246223,6249020,,,
+ENSG00000099721,AMELY,chrY,chrY non-PAR,6865918,6911752,,,
+ENSG00000092377,TBL1Y,chrY,chrY non-PAR,6910562,7101970,,,
+ENSG00000233803,TSPY4,chrY,chrY non-PAR,9337464,9340286,,,
+ENSG00000229549,TSPY8,chrY,chrY non-PAR,9357797,9360599,,,
+ENSG00000228927,TSPY3,chrY,chrY non-PAR,9398421,9401223,,,
+ENSG00000258992,TSPY1,chrY,chrY non-PAR,9466955,9469749,,,
+ENSG00000238074,TSPY9,chrY,chrY non-PAR,9487267,9490088,,,
+ENSG00000236424,TSPY10,chrY,chrY non-PAR,9527880,9530683,,,
+ENSG00000114374,USP9Y,chrY,chrY non-PAR,12537650,12860852,,,
+ENSG00000067048,DDX3Y,chrY,chrY non-PAR,12904108,12920478,,,
+ENSG00000183878,UTY,chrY,chrY non-PAR,13234577,13480673,,,
+ENSG00000154620,TMSB4Y,chrY,chrY non-PAR,13702892,13707652,,,
+ENSG00000129864,VCY,chrY,chrY non-PAR,13985772,13986473,,,
+ENSG00000129862,VCY1B,chrY,chrY non-PAR,14056227,14056958,,,
+ENSG00000165246,NLGN4Y,chrY,chrY non-PAR,14522573,14845654,,,
+ENSG00000129873,CDY2B,chrY,chrY non-PAR,17878260,17880220,,,
+ENSG00000182415,CDY2A,chrY,chrY non-PAR,18025787,18027746,,,
+ENSG00000172468,HSFY1,chrY,chrY non-PAR,18546691,18588963,,,
+ENSG00000169953,HSFY2,chrY,chrY non-PAR,18731440,18773735,,,
+ENSG00000012817,KDM5D,chrY,chrY non-PAR,19702298,19745148,,,
+ENSG00000198692,EIF1AY,chrY,chrY non-PAR,20575694,20593154,,,
+ENSG00000280969,RPS4Y2,chrY,chrY non-PAR,20756108,20781032,,,
+ENSG00000242875,RBMY1B,chrY,chrY non-PAR,21511338,21560066,,,
+ENSG00000234414,RBMY1A1,chrY,chrY non-PAR,21534855,21549330,,,
+ENSG00000244395,RBMY1D,chrY,chrY non-PAR,21880076,21894526,,,
+ENSG00000242389,RBMY1E,chrY,chrY non-PAR,21900656,21918055,,,
+ENSG00000169800,RBMY1F,chrY,chrY non-PAR,22162882,22182989,,,
+ENSG00000226941,RBMY1J,chrY,chrY non-PAR,22403410,22417881,,,
+ENSG00000183753,BPY2,chrY,chrY non-PAR,22973819,23005465,,,
+ENSG00000188120,DAZ1,chrY,chrY non-PAR,23129355,23199010,,,
+ENSG00000205944,DAZ2,chrY,chrY non-PAR,23219447,23291356,,,
+ENSG00000172352,CDY1B,chrY,chrY non-PAR,24045229,24048019,,,
+ENSG00000183795,BPY2B,chrY,chrY non-PAR,24607560,24639207,,,
+ENSG00000187191,DAZ3,chrY,chrY non-PAR,24763069,24813492,,,
+ENSG00000205916,DAZ4,chrY,chrY non-PAR,24833843,24907040,,,
+ENSG00000185894,BPY2C,chrY,chrY non-PAR,25030901,25062548,,,
+ENSG00000172288,CDY1,chrY,chrY non-PAR,25622117,25624902,,,

paper-releases/pbisc-diffusion/updates/20261001T023742Z-deck-calibration-giroux-sexgenes/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/data/sex_linked_genes/par_genes_on_axis.csv

@@ -0,0 +1,40 @@
+gene_id,symbol,chromosome,start,end,par
+ENSG00000182378,PLCXD1,chrX,276322,303358,PAR#1
+ENSG00000178605,GTPBP6,chrX,293785,318862,PAR#1
+ENSG00000167393,PPP2R3B,chrX,333933,387213,PAR#1
+ENSG00000185960,SHOX,chrX,624344,659411,PAR#1
+ENSG00000205755,CRLF2,chrX,1190490,1212723,PAR#1
+ENSG00000198223,CSF2RA,chrX,1268779,1325373,PAR#1
+ENSG00000185291,IL3RA,chrX,1335025,1382689,PAR#1
+ENSG00000169100,SLC25A6,chrX,1350030,1392929,PAR#1
+ENSG00000169093,ASMTL,chrX,1403126,1453786,PAR#1
+ENSG00000182162,P2RY8,chrX,1462572,1537207,PAR#1
+ENSG00000197976,AKAP17A,chrX,1591592,1602532,PAR#1
+ENSG00000196433,ASMT,chrX,1615059,1643081,PAR#1
+ENSG00000169084,DHRSX,chrX,2217548,2502805,PAR#1
+ENSG00000214717,ZBED1,chrX,2486169,2502862,PAR#1
+ENSG00000002586,CD99,chrX,2690988,2741312,PAR#1
+ENSG00000124343,XG,chrX,2751798,2816500,boundary
+ENSG00000185973,TMLHE,chrX,155414745,155719107,boundary
+ENSG00000168939,SPRY3,chrX,155612298,155782459,boundary
+ENSG00000124333,VAMP7,chrX,155881227,155943769,PAR#2
+ENSG00000124334,IL9R,chrX,155997651,156013017,PAR#2
+ENSG00000182484,WASH6P,chrX,156020826,156025710,PAR#2
+ENSG00000292344,PLCXD1,chrY,276322,303358,PAR#1
+ENSG00000292358,GTPBP6,chrY,293785,318862,PAR#1
+ENSG00000292327,PPP2R3B,chrY,333933,387213,PAR#1
+ENSG00000292354,SHOX,chrY,624344,659411,PAR#1
+ENSG00000292363,CRLF2,chrY,1190490,1212723,PAR#1
+ENSG00000292357,CSF2RA,chrY,1268779,1325373,PAR#1
+ENSG00000292332,IL3RA,chrY,1335025,1382689,PAR#1
+ENSG00000292334,SLC25A6,chrY,1350030,1392929,PAR#1
+ENSG00000292339,ASMTL,chrY,1403126,1453786,PAR#1
+ENSG00000292333,P2RY8,chrY,1462572,1537207,PAR#1
+ENSG00000292343,AKAP17A,chrY,1591592,1602532,PAR#1
+ENSG00000292336,ASMT,chrY,1615059,1643081,PAR#1
+ENSG00000292338,DHRSX,chrY,2217548,2502805,PAR#1
+ENSG00000292345,ZBED1,chrY,2486169,2502862,PAR#1
+ENSG00000292348,CD99,chrY,2690988,2741312,PAR#1
+ENSG00000292366,VAMP7,chrY,57067747,57130289,PAR#2
+ENSG00000292373,IL9R,chrY,57184171,57199537,PAR#2
+ENSG00000292372,WASH6P,chrY,57207346,57212230,PAR#2

paper-releases/pbisc-diffusion/updates/20261001T023742Z-deck-calibration-giroux-sexgenes/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/data/sex_linked_genes/sex_linked_genes_exclude.csv

@@ -0,0 +1,197 @@
+gene_id,symbol,chromosome,reason,start,end,tukiainen_status,tukiainen_region,tukiainen_mapped_by
+ENSG00000124343,XG,chrX,chrX XCI escape (Tukiainen 2017: Escape),2751798,2816500,Escape,nonPAR,ensembl id
+ENSG00000056998,GYG2,chrX,chrX XCI escape (Tukiainen 2017: Escape),2828571,2911025,Escape,nonPAR,ensembl id
+ENSG00000006756,ARSD,chrX,chrX XCI escape (Tukiainen 2017: Escape),2903972,2929405,Escape,nonPAR,ensembl id
+ENSG00000157399,ARSL,chrX,chrX XCI escape (Tukiainen 2017: Escape),2932983,2968475,Escape,nonPAR,ensembl id
+ENSG00000205667,ARSH,chrX,chrX XCI escape (Tukiainen 2017: Escape),3006546,3034111,Escape,nonPAR,ensembl id
+ENSG00000062096,ARSF,chrX,chrX XCI escape (Tukiainen 2017: Escape),3040235,3112822,Escape,nonPAR,ensembl id
+ENSG00000101825,MXRA5,chrX,chrX XCI escape (Tukiainen 2017: Escape),3308228,3347100,Escape,nonPAR,ensembl id
+ENSG00000183943,PRKX,chrX,chrX XCI escape (Tukiainen 2017: Escape),3604340,3713657,Escape,nonPAR,ensembl id
+ENSG00000146938,NLGN4X,chrX,chrX XCI escape (Tukiainen 2017: Variable),5840637,6228883,Variable,nonPAR,ensembl id
+ENSG00000130021,PUDP,chrX,chrX XCI escape (Tukiainen 2017: Escape),6667865,7148184,Escape,nonPAR,ensembl id
+ENSG00000101846,STS,chrX,chrX XCI escape (Tukiainen 2017: Escape),7147237,7804358,Escape,nonPAR,ensembl id
+ENSG00000006757,PNPLA4,chrX,chrX XCI escape (Tukiainen 2017: Escape),7898247,7927739,Escape,nonPAR,ensembl id
+ENSG00000011201,ANOS1,chrX,chrX XCI escape (Tukiainen 2017: Escape),8528874,8732195,Escape,nonPAR,ensembl id
+ENSG00000177138,FAM9B,chrX,chrX XCI escape (Tukiainen 2017: Variable),9024232,9295682,Variable,nonPAR,ensembl id
+ENSG00000101849,TBL1X,chrX,chrX XCI escape (Tukiainen 2017: Variable),9463258,9741723,Variable,nonPAR,ensembl id
+ENSG00000101850,GPR143,chrX,chrX XCI escape (Tukiainen 2017: Variable),9724039,9786297,Variable,nonPAR,ensembl id
+ENSG00000146950,SHROOM2,chrX,chrX XCI escape (Tukiainen 2017: Variable),9786378,9949443,Variable,nonPAR,ensembl id
+ENSG00000005302,MSL3,chrX,chrX XCI escape (Tukiainen 2017: Escape),11757788,11776782,Escape,nonPAR,ensembl id
+ENSG00000187268,FAM9C,chrX,chrX XCI escape (Tukiainen 2017: Escape),13035617,13044682,Escape,nonPAR,ensembl id
+ENSG00000176896,TCEANC,chrX,chrX XCI escape (Tukiainen 2017: Escape),13653078,13681964,Escape,nonPAR,ensembl id
+ENSG00000123595,RAB9A,chrX,chrX XCI escape (Tukiainen 2017: Escape),13689117,13712064,Escape,nonPAR,ensembl id
+ENSG00000196459,TRAPPC2,chrX,chrX XCI escape (Tukiainen 2017: Escape),13712244,13734638,Escape,nonPAR,ensembl id
+ENSG00000046651,OFD1,chrX,chrX XCI escape (Tukiainen 2017: Escape),13734667,13777955,Escape,nonPAR,ensembl id
+ENSG00000046653,GPM6B,chrX,chrX XCI escape (Tukiainen 2017: Escape),13770691,13938838,Escape,nonPAR,ensembl id
+ENSG00000046647,GEMIN8,chrX,chrX XCI escape (Tukiainen 2017: Escape),13998099,14029928,Escape,nonPAR,ensembl id
+ENSG00000165192,ASB11,chrX,chrX XCI escape (Tukiainen 2017: Variable),15281486,15315658,Variable,nonPAR,ensembl id
+ENSG00000087842,PIR,chrX,chrX XCI escape (Tukiainen 2017: Variable),15384799,15493635,Variable,nonPAR,ensembl id
+ENSG00000102010,BMX,chrX,chrX XCI escape (Tukiainen 2017: Variable),15464246,15556529,Variable,nonPAR,ensembl id
+ENSG00000130234,ACE2,chrX,chrX XCI escape (Tukiainen 2017: Escape),15494290,15607236,Escape,nonPAR,ensembl id
+ENSG00000147003,CLTRN,chrX,chrX XCI escape (Tukiainen 2017: Escape),15627084,15675377,Escape,nonPAR,ensembl id
+ENSG00000169239,CA5B,chrX,chrX XCI escape (Tukiainen 2017: Escape),15688830,15788411,Escape,nonPAR,ensembl id
+ENSG00000169249,ZRSR2,chrX,chrX XCI escape (Tukiainen 2017: Escape),15790106,15830694,Escape,nonPAR,ensembl id
+ENSG00000182287,AP1S2,chrX,chrX XCI escape (Tukiainen 2017: Escape),15812775,15855705,Escape,nonPAR,ensembl id
+ENSG00000126010,GRPR,chrX,chrX XCI escape (Tukiainen 2017: Variable),16123545,16159474,Variable,nonPAR,ensembl id
+ENSG00000047230,CTPS2,chrX,chrX XCI escape (Tukiainen 2017: Variable),16580088,16712984,Variable,nonPAR,ensembl id
+ENSG00000169895,SYAP1,chrX,chrX XCI escape (Tukiainen 2017: Escape),16719545,16765340,Escape,nonPAR,ensembl id
+ENSG00000086712,TXLNG,chrX,chrX XCI escape (Tukiainen 2017: Escape),16786415,16844519,Escape,nonPAR,ensembl id
+ENSG00000102054,RBBP7,chrX,chrX XCI escape (Tukiainen 2017: Variable),16838236,16870415,Variable,nonPAR,ensembl id
+ENSG00000188158,NHS,chrX,chrX XCI escape (Tukiainen 2017: Variable),17375200,17735994,Variable,nonPAR,ensembl id
+ENSG00000177324,BEND2,chrX,chrX XCI escape (Tukiainen 2017: Variable),18162931,18220886,Variable,nonPAR,ensembl id
+ENSG00000086717,PPEF1,chrX,chrX XCI escape (Tukiainen 2017: Variable),18675909,18828342,Variable,nonPAR,ensembl id
+ENSG00000180815,MAP3K15,chrX,chrX XCI escape (Tukiainen 2017: Variable),19360056,19515513,Variable,nonPAR,ensembl id
+ENSG00000173674,EIF1AX,chrX,chrX XCI escape (Tukiainen 2017: Escape),20124519,20141982,Escape,nonPAR,ensembl id
+ENSG00000149970,CNKSR2,chrX,chrX XCI escape (Tukiainen 2017: Variable),21372801,21654701,Variable,nonPAR,ensembl id
+ENSG00000102174,PHEX,chrX,chrX XCI escape (Tukiainen 2017: Variable),22032293,22494713,Variable,nonPAR,ensembl id
+ENSG00000165186,PTCHD1,chrX,chrX XCI escape (Tukiainen 2017: Variable),23334076,23404374,Variable,nonPAR,ensembl id
+ENSG00000130741,EIF2S3,chrX,chrX XCI escape (Tukiainen 2017: Escape),24054628,24078810,Escape,nonPAR,ensembl id
+ENSG00000005889,ZFX,chrX,chrX XCI escape (Tukiainen 2017: Escape),24148970,24216255,Escape,nonPAR,ensembl id
+ENSG00000169306,IL1RAPL1,chrX,chrX XCI escape (Tukiainen 2017: Variable),28587123,29958600,Variable,nonPAR,ensembl id
+ENSG00000169297,NR0B1,chrX,chrX XCI escape (Tukiainen 2017: Escape),30304206,30309394,Escape,nonPAR,ensembl id
+ENSG00000120280,TASL,chrX,chrX XCI escape (Tukiainen 2017: Variable),30557703,30577921,Variable,nonPAR,ensembl id
+ENSG00000165164,CFAP47,chrX,chrX XCI escape (Tukiainen 2017: Escape),35919727,36385881,Escape,nonPAR,ensembl id
+ENSG00000147036,LANCL3,chrX,chrX XCI escape (Tukiainen 2017: Variable),37571565,37684463,Variable,nonPAR,ensembl id
+ENSG00000047597,XK,chrX,chrX XCI escape (Tukiainen 2017: Variable),37685558,37732130,Variable,nonPAR,ensembl id
+ENSG00000101955,SRPX,chrX,chrX XCI escape (Tukiainen 2017: Variable),38149336,38220941,Variable,nonPAR,ensembl id
+ENSG00000036473,OTC,chrX,chrX XCI escape (Tukiainen 2017: Variable),38327598,38424632,Variable,nonPAR,ensembl id
+ENSG00000182220,ATP6AP2,chrX,chrX XCI escape (Tukiainen 2017: new call),40579372,40607713,Inactive,nonPAR,ensembl id
+ENSG00000185753,CXorf38,chrX,chrX XCI escape (Tukiainen 2017: Escape),40626921,40647572,Escape,nonPAR,ensembl id
+ENSG00000180182,MED14,chrX,chrX XCI escape (Tukiainen 2017: Escape),40648305,40735924,Escape,nonPAR,ensembl id
+ENSG00000124486,USP9X,chrX,chrX XCI escape (Tukiainen 2017: Escape),41085346,41236579,Escape,nonPAR,ensembl id
+ENSG00000215301,DDX3X,chrX,chrX XCI escape (Tukiainen 2017: Escape),41333348,41364472,Escape,nonPAR,ensembl id
+ENSG00000189221,MAOA,chrX,chrX XCI escape (Tukiainen 2017: Escape),43654907,43746821,Escape,nonPAR,ensembl id
+ENSG00000124479,NDP,chrX,chrX XCI escape (Tukiainen 2017: Variable),43948772,43973603,Variable,nonPAR,ensembl id
+ENSG00000183690,EFHC2,chrX,chrX XCI escape (Tukiainen 2017: Variable),44145243,44343850,Variable,nonPAR,ensembl id
+ENSG00000069509,FUNDC1,chrX,chrX XCI escape (Tukiainen 2017: Escape),44522431,44543013,Escape,nonPAR,ensembl id
+ENSG00000147050,KDM6A,chrX,chrX XCI escape (Tukiainen 2017: Escape),44873130,45114135,Escape,nonPAR,ensembl id
+ENSG00000130985,UBA1,chrX,chrX XCI escape (Tukiainen 2017: Escape),47190713,47215173,Escape,nonPAR,ensembl id
+ENSG00000102225,CDK16,chrX,chrX XCI escape (Tukiainen 2017: Escape),47217860,47230000,Escape,nonPAR,ensembl id
+ENSG00000147117,ZNF157,chrX,chrX XCI escape (Tukiainen 2017: Variable),47366479,47414624,Variable,nonPAR,ensembl id
+ENSG00000102265,TIMP1,chrX,chrX XCI escape (Tukiainen 2017: Variable),47582227,47586793,Variable,nonPAR,ensembl id
+ENSG00000102317,RBM3,chrX,chrX XCI escape (Tukiainen 2017: Variable),48574056,48581162,Variable,nonPAR,ensembl id
+ENSG00000015285,WAS,chrX,chrX XCI escape (Tukiainen 2017: Variable),48676593,48691431,Variable,nonPAR,ensembl id
+ENSG00000102103,PQBP1,chrX,chrX XCI escape (Tukiainen 2017: Variable),48890197,48903640,Variable,nonPAR,ensembl id
+ENSG00000126012,KDM5C,chrX,chrX XCI escape (Tukiainen 2017: Escape),53176277,53225422,Escape,nonPAR,ensembl id
+ENSG00000124313,IQSEC2,chrX,chrX XCI escape (Tukiainen 2017: Escape),53225828,53321396,Escape,nonPAR,ensembl id
+ENSG00000072501,SMC1A,chrX,chrX XCI escape (Tukiainen 2017: Escape),53361522,53422750,Escape,nonPAR,ensembl id
+ENSG00000158423,RIBC1,chrX,chrX XCI escape (Tukiainen 2017: Escape),53421951,53431624,Escape,nonPAR,ensembl id
+ENSG00000155659,VSIG4,chrX,chrX XCI escape (Tukiainen 2017: Variable),66021738,66040146,Variable,nonPAR,ensembl id
+ENSG00000184210,DGAT2L6,chrX,chrX XCI escape (Tukiainen 2017: Variable),70177483,70205704,Variable,nonPAR,ensembl id
+ENSG00000184481,FOXO4,chrX,chrX XCI escape (Tukiainen 2017: Variable),71095839,71103535,Variable,nonPAR,ensembl id
+ENSG00000204165,CXorf65,chrX,chrX XCI escape (Tukiainen 2017: Variable),71103889,71106788,Variable,nonPAR,ensembl id
+ENSG00000204131,NHSL2,chrX,chrX XCI escape (Tukiainen 2017: Variable),71910834,72161750,Variable,nonPAR,ensembl id
+ENSG00000198034,RPS4X,chrX,chrX XCI escape (Tukiainen 2017: Escape),72255661,72277344,Escape,nonPAR,ensembl id
+ENSG00000198934,MAGEE1,chrX,chrX XCI escape (Tukiainen 2017: Variable),76427710,76431342,Variable,nonPAR,ensembl id
+ENSG00000131174,COX7B,chrX,chrX XCI escape (Tukiainen 2017: Variable),77895727,77907555,Variable,nonPAR,ensembl id
+ENSG00000165240,ATP7A,chrX,chrX XCI escape (Tukiainen 2017: Variable),77910688,78050395,Variable,nonPAR,ensembl id
+ENSG00000078589,P2RY10,chrX,chrX XCI escape (Tukiainen 2017: Variable),78945332,78963727,Variable,nonPAR,ensembl id
+ENSG00000147138,GPR174,chrX,chrX XCI escape (Tukiainen 2017: Variable),79144664,79175318,Variable,nonPAR,ensembl id
+ENSG00000198157,HMGN5,chrX,chrX XCI escape (Tukiainen 2017: Variable),81112915,81202016,Variable,nonPAR,ensembl id
+ENSG00000131171,SH3BGRL,chrX,chrX XCI escape (Tukiainen 2017: Variable),81201852,81298872,Variable,nonPAR,ensembl id
+ENSG00000147180,ZNF711,chrX,chrX XCI escape (Tukiainen 2017: Variable),85243839,85273771,Variable,nonPAR,ensembl id
+ENSG00000124429,POF1B,chrX,chrX XCI escape (Tukiainen 2017: Variable),85276746,85379755,Variable,nonPAR,ensembl id
+ENSG00000188419,CHM,chrX,chrX XCI escape (Tukiainen 2017: new call),85861180,86047561,Inactive,nonPAR,ensembl id
+ENSG00000126733,DACH2,chrX,chrX XCI escape (Tukiainen 2017: Variable),86148451,86832604,Variable,nonPAR,ensembl id
+ENSG00000102290,PCDH11X,chrX,chrX XCI escape (Tukiainen 2017: Variable),91779261,92623230,Variable,nonPAR,ensembl id
+ENSG00000186310,NAP1L3,chrX,chrX XCI escape (Tukiainen 2017: Escape),93670930,93673578,Escape,nonPAR,ensembl id
+ENSG00000165194,PCDH19,chrX,chrX XCI escape (Tukiainen 2017: Escape),100291644,100410296,Escape,nonPAR,ensembl id
+ENSG00000000003,TSPAN6,chrX,chrX XCI escape (Tukiainen 2017: Variable),100627080,100639991,Variable,nonPAR,ensembl id
+ENSG00000102359,SRPX2,chrX,chrX XCI escape (Tukiainen 2017: Variable),100644195,100675788,Variable,nonPAR,ensembl id
+ENSG00000102362,SYTL4,chrX,chrX XCI escape (Tukiainen 2017: Escape),100671783,100732154,Escape,nonPAR,ensembl id
+ENSG00000007952,NOX1,chrX,chrX XCI escape (Tukiainen 2017: Escape),100843324,100874464,Escape,nonPAR,ensembl id
+ENSG00000182489,XKRX,chrX,chrX XCI escape (Tukiainen 2017: Variable),100886924,100929433,Variable,nonPAR,ensembl id
+ENSG00000102387,TAF7L,chrX,chrX XCI escape (Tukiainen 2017: Escape),101268253,101293057,Escape,nonPAR,ensembl id
+ENSG00000166432,ZMAT1,chrX,chrX XCI escape (Tukiainen 2017: Variable),101882288,101932090,Variable,nonPAR,ensembl id
+ENSG00000147206,NXF3,chrX,chrX XCI escape (Tukiainen 2017: Variable),103074798,103093143,Variable,nonPAR,ensembl id
+ENSG00000185222,TCEAL9,chrX,chrX XCI escape (Tukiainen 2017: Variable),103356162,103358696,Variable,nonPAR,ensembl id
+ENSG00000189108,IL1RAPL2,chrX,chrX XCI escape (Tukiainen 2017: Variable),104566194,105769728,Variable,nonPAR,ensembl id
+ENSG00000198088,NUP62CL,chrX,chrX XCI escape (Tukiainen 2017: Variable),107122726,107245108,Variable,nonPAR,ensembl id
+ENSG00000080572,DNAAF6,chrX,chrX XCI escape (Tukiainen 2017: Escape),107206606,107244247,Escape,nonPAR,ensembl id
+ENSG00000147234,FRMPD3,chrX,chrX XCI escape (Tukiainen 2017: Variable),107449652,107605255,Variable,nonPAR,ensembl id
+ENSG00000080561,MID2,chrX,chrX XCI escape (Tukiainen 2017: Variable),107825730,107931637,Variable,nonPAR,ensembl id
+ENSG00000197565,COL4A6,chrX,chrX XCI escape (Tukiainen 2017: Variable),108155297,108439497,Variable,nonPAR,ensembl id
+ENSG00000243978,RTL9,chrX,chrX XCI escape (Tukiainen 2017: Variable),110358848,110456334,Variable,nonPAR,ensembl id
+ENSG00000101901,ALG13,chrX,chrX XCI escape (Tukiainen 2017: Variable),111665811,111766130,Variable,nonPAR,ensembl id
+ENSG00000072315,TRPC5,chrX,chrX XCI escape (Tukiainen 2017: Variable),111768011,112082776,Variable,nonPAR,ensembl id
+ENSG00000187823,RTL4,chrX,chrX XCI escape (Tukiainen 2017: Escape),112082965,112458566,Escape,nonPAR,ensembl id
+ENSG00000147246,HTR2C,chrX,chrX XCI escape (Tukiainen 2017: Escape),114584073,114910074,Escape,nonPAR,ensembl id
+ENSG00000102024,PLS3,chrX,chrX XCI escape (Tukiainen 2017: Variable),115560914,115651439,Variable,nonPAR,ensembl id
+ENSG00000250423,KIAA1210,chrX,chrX XCI escape (Tukiainen 2017: Variable),119078635,119150579,Variable,nonPAR,ensembl id
+ENSG00000186471,AKAP14,chrX,chrX XCI escape (Tukiainen 2017: Variable),119895837,119920720,Variable,nonPAR,ensembl id
+ENSG00000125675,GRIA3,chrX,chrX XCI escape (Tukiainen 2017: Variable),123184023,123490915,Variable,nonPAR,ensembl id
+ENSG00000183918,SH2D1A,chrX,chrX XCI escape (Tukiainen 2017: Variable),124227868,124373197,Variable,nonPAR,ensembl id
+ENSG00000183631,PRR32,chrX,chrX XCI escape (Tukiainen 2017: Escape),126819710,126821786,Escape,nonPAR,ensembl id
+ENSG00000056277,ZNF280C,chrX,chrX XCI escape (Tukiainen 2017: Variable),130202699,130268923,Variable,nonPAR,ensembl id
+ENSG00000134597,RBMX2,chrX,chrX XCI escape (Tukiainen 2017: new call),130401922,130462404,Inactive,nonPAR,ensembl id
+ENSG00000165694,FRMD7,chrX,chrX XCI escape (Tukiainen 2017: Variable),132076990,132128020,Variable,nonPAR,ensembl id
+ENSG00000171004,HS6ST2,chrX,chrX XCI escape (Tukiainen 2017: Escape),132626015,132961395,Escape,nonPAR,ensembl id
+ENSG00000170965,PLAC1,chrX,chrX XCI escape (Tukiainen 2017: Variable),134565835,134764355,Variable,nonPAR,ensembl id
+ENSG00000156504,PABIR2,chrX,chrX XCI escape (Tukiainen 2017: Variable),134769513,134797259,Variable,nonPAR,ensembl id
+ENSG00000022267,FHL1,chrX,chrX XCI escape (Tukiainen 2017: new call),136146702,136211359,Inactive,nonPAR,ensembl id
+ENSG00000129680,MAP7D3,chrX,chrX XCI escape (Tukiainen 2017: new call),136213220,136256482,Inactive,nonPAR,ensembl id
+ENSG00000156920,ADGRG4,chrX,chrX XCI escape (Tukiainen 2017: Escape),136300963,136416890,Escape,nonPAR,ensembl id
+ENSG00000102243,VGLL1,chrX,chrX XCI escape (Tukiainen 2017: Escape),136532135,136556807,Escape,nonPAR,ensembl id
+ENSG00000102245,CD40LG,chrX,chrX XCI escape (Tukiainen 2017: Variable),136648139,136660390,Variable,nonPAR,ensembl id
+ENSG00000129682,FGF13,chrX,chrX XCI escape (Tukiainen 2017: Variable),138614727,139222777,Variable,nonPAR,ensembl id
+ENSG00000101981,F9,chrX,chrX XCI escape (Tukiainen 2017: Variable),139530731,139568549,Variable,nonPAR,ensembl id
+ENSG00000165509,MAGEC3,chrX,chrX XCI escape (Tukiainen 2017: Escape),141838316,141898234,Escape,nonPAR,ensembl id
+ENSG00000155966,AFF2,chrX,chrX XCI escape (Tukiainen 2017: Variable),148500611,149000663,Variable,nonPAR,ensembl id
+ENSG00000102287,GABRE,chrX,chrX XCI escape (Tukiainen 2017: Variable),151953123,151974694,Variable,nonPAR,ensembl id
+ENSG00000011677,GABRA3,chrX,chrX XCI escape (Tukiainen 2017: Variable),152166042,152451425,Variable,nonPAR,ensembl id
+ENSG00000198883,PNMA5,chrX,chrX XCI escape (Tukiainen 2017: Variable),152988824,152994116,Variable,nonPAR,ensembl id
+ENSG00000183837,PNMA3,chrX,chrX XCI escape (Tukiainen 2017: Variable),153056409,153060467,Variable,nonPAR,ensembl id
+ENSG00000130822,PNCK,chrX,chrX XCI escape (Tukiainen 2017: Variable),153669730,153689033,Variable,nonPAR,ensembl id
+ENSG00000198753,PLXNB3,chrX,chrX XCI escape (Tukiainen 2017: Escape),153764179,153779346,Escape,nonPAR,ensembl id
+ENSG00000184343,SRPK3,chrX,chrX XCI escape (Tukiainen 2017: Variable),153781001,153785768,Variable,nonPAR,ensembl id
+ENSG00000198910,L1CAM,chrX,chrX XCI escape (Tukiainen 2017: Variable),153861511,153886204,Variable,nonPAR,ensembl id
+ENSG00000126895,AVPR2,chrX,chrX XCI escape (Tukiainen 2017: Variable),153902531,153907169,Variable,nonPAR,ensembl id
+ENSG00000089820,ARHGAP4,chrX,chrX XCI escape (Tukiainen 2017: Variable),153907367,153934999,Variable,nonPAR,ensembl id
+ENSG00000102030,NAA10,chrX,chrX XCI escape (Tukiainen 2017: Variable),153928799,153935083,Variable,nonPAR,ensembl id
+ENSG00000102032,RENBP,chrX,chrX XCI escape (Tukiainen 2017: Escape),153935269,153944688,Escape,nonPAR,ensembl id
+ENSG00000172534,HCFC1,chrX,chrX XCI escape (Tukiainen 2017: Variable),153946434,153972427,Variable,nonPAR,ensembl id
+ENSG00000269335,IKBKG,chrX,chrX XCI escape (Tukiainen 2017: Escape),154541179,154568543,Escape,nonPAR,unique chrX symbol (GENCODE v50)
+ENSG00000155962,CLIC2,chrX,chrX XCI escape (Tukiainen 2017: new call),155272944,155334824,Inactive,nonPAR,ensembl id
+ENSG00000184895,SRY,chrY,chrY non-PAR,2786855,2787682,,,
+ENSG00000129824,RPS4Y1,chrY,chrY non-PAR,2841402,2932000,,,
+ENSG00000067646,ZFY,chrY,chrY non-PAR,2935201,2982579,,,
+ENSG00000176679,TGIF2LY,chrY,chrY non-PAR,3579067,3580041,,,
+ENSG00000099715,PCDH11Y,chrY,chrY non-PAR,5000085,5742224,,,
+ENSG00000168757,TSPY2,chrY,chrY non-PAR,6246223,6249020,,,
+ENSG00000099721,AMELY,chrY,chrY non-PAR,6865918,6911752,,,
+ENSG00000092377,TBL1Y,chrY,chrY non-PAR,6910562,7101970,,,
+ENSG00000233803,TSPY4,chrY,chrY non-PAR,9337464,9340286,,,
+ENSG00000229549,TSPY8,chrY,chrY non-PAR,9357797,9360599,,,
+ENSG00000228927,TSPY3,chrY,chrY non-PAR,9398421,9401223,,,
+ENSG00000258992,TSPY1,chrY,chrY non-PAR,9466955,9469749,,,
+ENSG00000238074,TSPY9,chrY,chrY non-PAR,9487267,9490088,,,
+ENSG00000236424,TSPY10,chrY,chrY non-PAR,9527880,9530683,,,
+ENSG00000114374,USP9Y,chrY,chrY non-PAR,12537650,12860852,,,
+ENSG00000067048,DDX3Y,chrY,chrY non-PAR,12904108,12920478,,,
+ENSG00000183878,UTY,chrY,chrY non-PAR,13234577,13480673,,,
+ENSG00000154620,TMSB4Y,chrY,chrY non-PAR,13702892,13707652,,,
+ENSG00000129864,VCY,chrY,chrY non-PAR,13985772,13986473,,,
+ENSG00000129862,VCY1B,chrY,chrY non-PAR,14056227,14056958,,,
+ENSG00000165246,NLGN4Y,chrY,chrY non-PAR,14522573,14845654,,,
+ENSG00000129873,CDY2B,chrY,chrY non-PAR,17878260,17880220,,,
+ENSG00000182415,CDY2A,chrY,chrY non-PAR,18025787,18027746,,,
+ENSG00000172468,HSFY1,chrY,chrY non-PAR,18546691,18588963,,,
+ENSG00000169953,HSFY2,chrY,chrY non-PAR,18731440,18773735,,,
+ENSG00000012817,KDM5D,chrY,chrY non-PAR,19702298,19745148,,,
+ENSG00000198692,EIF1AY,chrY,chrY non-PAR,20575694,20593154,,,
+ENSG00000280969,RPS4Y2,chrY,chrY non-PAR,20756108,20781032,,,
+ENSG00000242875,RBMY1B,chrY,chrY non-PAR,21511338,21560066,,,
+ENSG00000234414,RBMY1A1,chrY,chrY non-PAR,21534855,21549330,,,
+ENSG00000244395,RBMY1D,chrY,chrY non-PAR,21880076,21894526,,,
+ENSG00000242389,RBMY1E,chrY,chrY non-PAR,21900656,21918055,,,
+ENSG00000169800,RBMY1F,chrY,chrY non-PAR,22162882,22182989,,,
+ENSG00000226941,RBMY1J,chrY,chrY non-PAR,22403410,22417881,,,
+ENSG00000183753,BPY2,chrY,chrY non-PAR,22973819,23005465,,,
+ENSG00000188120,DAZ1,chrY,chrY non-PAR,23129355,23199010,,,
+ENSG00000205944,DAZ2,chrY,chrY non-PAR,23219447,23291356,,,
+ENSG00000172352,CDY1B,chrY,chrY non-PAR,24045229,24048019,,,
+ENSG00000183795,BPY2B,chrY,chrY non-PAR,24607560,24639207,,,
+ENSG00000187191,DAZ3,chrY,chrY non-PAR,24763069,24813492,,,
+ENSG00000205916,DAZ4,chrY,chrY non-PAR,24833843,24907040,,,
+ENSG00000185894,BPY2C,chrY,chrY non-PAR,25030901,25062548,,,
+ENSG00000172288,CDY1,chrY,chrY non-PAR,25622117,25624902,,,

paper-releases/pbisc-diffusion/updates/20261001T023742Z-deck-calibration-giroux-sexgenes/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/data/sex_linked_genes/sources/GCF_000001405.40_GRCh38.p14_assembly_regions.txt

@@ -0,0 +1,614 @@
+# Region Report
+# Assembly name:  GRCh38.p14
+# Description:    Genome Reference Consortium Human Build 38 patch release 14 (GRCh38.p14)
+# Organism name:  Homo sapiens (human)
+# Taxid:          9606
+# BioProject:     PRJNA31257
+# Submitter:      Genome Reference Consortium
+# Date:           2022-02-03
+# Synonyms:       hg38	
+# Assembly type:  haploid-with-alt-loci
+# Release type:   patch
+# Assembly level: Chromosome
+# Genome representation: full
+# RefSeq category: Reference Genome
+# GenBank assembly accession: GCA_000001405.29
+# RefSeq assembly accession: GCF_000001405.40
+# RefSeq assembly and GenBank assemblies identical: no
+#
+## Assembly-Units:
+## GenBank Unit Accession	RefSeq Unit Accession	Assembly-Unit name
+## GCA_000001305.2	GCF_000001305.16	Primary Assembly
+## GCA_000005045.27	GCF_000005045.26	PATCHES
+## GCA_000001315.2	GCF_000001315.3	ALT_REF_LOCI_1
+## GCA_000001325.2	GCF_000001325.3	ALT_REF_LOCI_2
+## GCA_000001335.2	GCF_000001335.2	ALT_REF_LOCI_3
+## GCA_000001345.2	GCF_000001345.2	ALT_REF_LOCI_4
+## GCA_000001355.2	GCF_000001355.2	ALT_REF_LOCI_5
+## GCA_000001365.2	GCF_000001365.3	ALT_REF_LOCI_6
+## GCA_000001375.2	GCF_000001375.2	ALT_REF_LOCI_7
+## GCA_000510225.1	GCF_000510225.1	ALT_REF_LOCI_8
+## GCA_000510235.1	GCF_000510235.1	ALT_REF_LOCI_9
+## GCA_000509915.1	GCF_000509915.1	ALT_REF_LOCI_10
+## GCA_000509925.1	GCF_000509925.1	ALT_REF_LOCI_11
+## GCA_000509935.1	GCF_000509935.1	ALT_REF_LOCI_12
+## GCA_000509945.1	GCF_000509945.1	ALT_REF_LOCI_13
+## GCA_000509955.1	GCF_000509955.1	ALT_REF_LOCI_14
+## GCA_000509965.1	GCF_000509965.1	ALT_REF_LOCI_15
+## GCA_000509975.1	GCF_000509975.1	ALT_REF_LOCI_16
+## GCA_000509985.1	GCF_000509985.1	ALT_REF_LOCI_17
+## GCA_000509995.1	GCF_000509995.1	ALT_REF_LOCI_18
+## GCA_000510005.1	GCF_000510005.1	ALT_REF_LOCI_19
+## GCA_000510015.1	GCF_000510015.1	ALT_REF_LOCI_20
+## GCA_000510025.1	GCF_000510025.1	ALT_REF_LOCI_21
+## GCA_000510035.1	GCF_000510035.1	ALT_REF_LOCI_22
+## GCA_000510045.1	GCF_000510045.1	ALT_REF_LOCI_23
+## GCA_000510055.1	GCF_000510055.1	ALT_REF_LOCI_24
+## GCA_000510065.1	GCF_000510065.1	ALT_REF_LOCI_25
+## GCA_000510075.1	GCF_000510075.1	ALT_REF_LOCI_26
+## GCA_000510085.1	GCF_000510085.1	ALT_REF_LOCI_27
+## GCA_000510095.1	GCF_000510095.1	ALT_REF_LOCI_28
+## GCA_000510105.1	GCF_000510105.1	ALT_REF_LOCI_29
+## GCA_000510125.1	GCF_000510125.1	ALT_REF_LOCI_30
+## GCA_000510135.1	GCF_000510135.1	ALT_REF_LOCI_31
+## GCA_000510145.1	GCF_000510145.1	ALT_REF_LOCI_32
+## GCA_000510155.1	GCF_000510155.1	ALT_REF_LOCI_33
+## GCA_000510165.1	GCF_000510165.1	ALT_REF_LOCI_34
+## GCA_000510175.1	GCF_000510175.1	ALT_REF_LOCI_35
+## GCA_000006015.1	GCF_000006015.1	non-nuclear
+#
+# Region-Name	Chromosome	Chromosome-Start	Chromosome-Stop	Scaffold-Role	Scaffold-GenBank-Accn	Scaffold-RefSeq-Accn	Assembly-Unit
+REGION108	1	2448811	2791270	alt-scaffold	KI270762.1	NT_187515.1	ALT_REF_LOCI_1
+PRAME_REGION_1	1	12818488	13312803	alt-scaffold	KI270766.1	NT_187517.1	ALT_REF_LOCI_1
+PRAME_REGION_1	1	12818488	13312803	fix-patch	KQ031383.1	NW_012132914.1	PATCHES
+PRAME_REGION_1	1	12818488	13312803	novel-patch	KQ983255.1	NW_015495298.1	PATCHES
+REGION200	1	16195864	17460319	fix-patch	MU273333.1	NW_025791756.1	PATCHES
+REGION200	1	16195864	17460319	fix-patch	KN538361.1	NW_011332688.1	PATCHES
+REGION228	1	23237486	23579959	novel-patch	KQ458383.1	NW_014040926.1	PATCHES
+REGION189	1	26512383	26678582	fix-patch	KN196473.1	NW_009646195.1	PATCHES
+REGION246	1	28206357	28366763	novel-patch	KZ208904.1	NW_018654706.1	PATCHES
+REGION261	1	29545040	29590578	fix-patch	KZ559100.1	NW_019805487.1	PATCHES
+REGION109	1	30352191	30456601	alt-scaffold	KI270760.1	NT_187514.1	ALT_REF_LOCI_1
+FOXO6	1	41250328	41436604	fix-patch	KN196472.1	NW_009646194.1	PATCHES
+REGION247	1	72287734	72419130	novel-patch	KZ208905.1	NW_018654707.1	PATCHES
+REGION229	1	103909381	104045121	novel-patch	KQ458382.1	NW_014040925.1	PATCHES
+REGION240	1	107987825	108539424	novel-patch	KV880763.1	NW_017852928.1	PATCHES
+REGION190	1	112909422	113029606	fix-patch	KN196474.1	NW_009646196.1	PATCHES
+REGION304	1	120382304	120906271	novel-patch	MU273330.1	NW_025791753.1	PATCHES
+CEN1	1	122026460	125184587	CEN	na	na	na
+1Q21	1	144488706	144674781	alt-scaffold	KI270765.1	NT_187520.1	ALT_REF_LOCI_1
+REGION2	1	153700531	153865738	alt-scaffold	GL383518.1	NW_003315905.1	ALT_REF_LOCI_1
+MTX1	1	155210382	155305245	alt-scaffold	GL383519.1	NW_003315906.1	ALT_REF_LOCI_1
+REGION305	1	156441444	156653375	fix-patch	MU273335.1	NW_025791758.1	PATCHES
+REGION306	1	159248175	159498620	fix-patch	MU273336.1	NW_025791759.1	PATCHES
+REGION307	1	196150325	197082310	novel-patch	MU273331.1	NW_025791754.1	PATCHES
+REGION3	1	198370083	198725175	alt-scaffold	GL383520.2	NW_003315907.2	ALT_REF_LOCI_1
+REGION199	1	210220259	210677001	fix-patch	KN538360.1	NW_011332687.1	PATCHES
+RNA5S_REGION_1	1	228408802	228753027	fix-patch	KZ208906.1	NW_018654708.1	PATCHES
+REGION110	1	234163457	234211370	alt-scaffold	KI270764.1	NT_187521.1	ALT_REF_LOCI_1
+TBCE	1	235360200	235568613	novel-patch	KQ458384.1	NW_014040927.1	PATCHES
+REGION111	1	242987893	243895211	alt-scaffold	KI270763.1	NT_187519.1	ALT_REF_LOCI_1
+REGION112	1	245305697	245727576	alt-scaffold	KI270759.1	NT_187516.1	ALT_REF_LOCI_1
+REGION308	1	247233558	247443983	fix-patch	MU273334.1	NW_025791757.1	PATCHES
+OLFACTORY_REGION_3	1	248352027	248693469	alt-scaffold	KI270761.1	NT_187518.1	ALT_REF_LOCI_1
+OLFACTORY_REGION_3	1	248352027	248693469	alt-scaffold	KI270892.1	NT_187646.1	ALT_REF_LOCI_2
+OLFACTORY_REGION_3	1	248352027	248693469	novel-patch	MU273332.1	NW_025791755.1	PATCHES
+REGION113	2	728878	860300	alt-scaffold	KI270770.1	NT_187525.1	ALT_REF_LOCI_1
+REGION114	2	1204935	1273724	alt-scaffold	KI270773.1	NT_187526.1	ALT_REF_LOCI_1
+REGION115	2	1315177	1541254	alt-scaffold	KI270774.1	NT_187529.1	ALT_REF_LOCI_1
+REGION121	2	3391898	3511146	alt-scaffold	KI270769.1	NT_187522.1	ALT_REF_LOCI_1
+REGION275	2	16105575	16187687	fix-patch	ML143342.1	NW_021159988.1	PATCHES
+APOB	2	20949331	21194057	fix-patch	MU273344.1	NW_025791767.1	PATCHES
+REGION309	2	21681752	21853976	fix-patch	MU273345.1	NW_025791768.1	PATCHES
+REGION4	2	36225959	36363315	alt-scaffold	GL383521.1	NW_003315908.1	ALT_REF_LOCI_1
+REGION310	2	73330506	73819906	fix-patch	MU273343.1	NW_025791766.1	PATCHES
+TGOLN2	2	85073815	85358733	novel-patch	MU273340.1	NW_025791763.1	PATCHES
+IGK	2	88891175	89330679	fix-patch	KQ031384.1	NW_012132915.1	PATCHES
+REGION116	2	90218337	90402511	alt-scaffold	KI270772.1	NT_187524.1	ALT_REF_LOCI_1
+REGION116	2	90218337	90402511	alt-scaffold	KI270894.1	NT_187648.1	ALT_REF_LOCI_2
+CEN2	2	92188146	94090557	CEN	na	na	na
+REGION311	2	95237897	95669507	novel-patch	MU273337.1	NW_025791760.1	PATCHES
+REGION312	2	97025303	98029056	fix-patch	MU273342.1	NW_025791765.1	PATCHES
+REGION117	2	115908855	116040717	alt-scaffold	KI270775.1	NT_187531.1	ALT_REF_LOCI_1
+REGION118	2	116874515	116981849	alt-scaffold	KI270771.1	NT_187530.1	ALT_REF_LOCI_1
+REGION248	2	126189128	126361783	novel-patch	KZ208907.1	NW_018654709.1	PATCHES
+REGION313	2	129827759	130324004	novel-patch	MU273339.1	NW_025791762.1	PATCHES
+REGION119	2	131697037	131806107	alt-scaffold	KI270768.1	NT_187528.1	ALT_REF_LOCI_1
+REGION44	2	148934069	149024119	alt-scaffold	GL582966.2	NW_003571033.2	ALT_REF_LOCI_1
+SPC25	2	168830363	168937194	alt-scaffold	GL383522.1	NW_003315909.1	ALT_REF_LOCI_1
+REGION314	2	171569828	172096484	novel-patch	MU273338.1	NW_025791761.1	PATCHES
+COL3A1	2	188895041	189015421	fix-patch	MU273341.1	NW_025791764.1	PATCHES
+REGION233	2	205890983	206421450	novel-patch	KQ983256.1	NW_015495299.1	PATCHES
+REGION249	2	208007848	208142067	novel-patch	KZ208908.1	NW_018654710.1	PATCHES
+REGION201	2	233054663	233420161	fix-patch	KN538363.1	NW_011332690.1	PATCHES
+REGION276	2	238772758	238918045	fix-patch	ML143341.1	NW_021159987.1	PATCHES
+REGION202	2	239696904	239905046	fix-patch	KN538362.1	NW_011332689.1	PATCHES
+REGION120	2	241787903	242117508	alt-scaffold	KI270767.1	NT_187523.1	ALT_REF_LOCI_1
+REGION120	2	241787903	242117508	alt-scaffold	KI270776.1	NT_187527.1	ALT_REF_LOCI_1
+REGION120	2	241787903	242117508	alt-scaffold	KI270893.1	NT_187647.1	ALT_REF_LOCI_2
+REGION73	3	11815268	11986497	alt-scaffold	JH636055.2	NW_003871060.2	ALT_REF_LOCI_1
+REGION235	3	16687511	17099186	fix-patch	KV766192.1	NW_017363813.1	PATCHES
+REGION122	3	20277967	20382602	alt-scaffold	KI270783.1	NT_187535.1	ALT_REF_LOCI_1
+REGION315	3	32634346	32933084	fix-patch	MU273347.1	NW_025791770.1	PATCHES
+REGION316	3	37430162	37903219	fix-patch	MU273348.1	NW_025791771.1	PATCHES
+REGION192	3	44474647	44925818	fix-patch	KN196475.1	NW_009646197.1	PATCHES
+SLC25A26	3	66023201	66396803	fix-patch	KQ031385.1	NW_012132916.1	PATCHES
+RYBP	3	72325441	72740399	fix-patch	KN538364.1	NW_011332691.1	PATCHES
+REGION277	3	75363639	75568796	novel-patch	ML143343.1	NW_021159989.1	PATCHES
+REGION250	3	84799968	84960626	novel-patch	KZ208909.1	NW_018654711.1	PATCHES
+REGION210	3	90528825	90699772	fix-patch	KQ031386.1	NW_012132917.1	PATCHES
+CEN3	3	90772459	93655574	CEN	na	na	na
+REGION191	3	91247723	91553319	fix-patch	KN196476.1	NW_009646198.1	PATCHES
+REGION262	3	94896163	94997637	fix-patch	KZ559104.1	NW_019805491.1	PATCHES
+REGION263	3	112116711	112302325	novel-patch	KZ559105.1	NW_019805492.1	PATCHES
+REGION123	3	125665519	125883802	alt-scaffold	KI270780.1	NT_187537.1	ALT_REF_LOCI_1
+REGION264	3	128137812	128433766	novel-patch	KZ559103.1	NW_019805490.1	PATCHES
+REGION5	3	151589366	151759498	alt-scaffold	GL383526.1	NW_003315913.1	ALT_REF_LOCI_1
+REGION124	3	154111571	154282042	alt-scaffold	KI270777.1	NT_187533.1	ALT_REF_LOCI_1
+REGION125	3	166300784	166544173	alt-scaffold	KI270778.1	NT_187536.1	ALT_REF_LOCI_1
+REGION265	3	175333210	175524240	novel-patch	KZ559102.1	NW_019805489.1	PATCHES
+REGION266	3	176115490	176274065	novel-patch	KZ559101.1	NW_019805488.1	PATCHES
+REGION126	3	184425340	184533338	alt-scaffold	KI270781.1	NT_187538.1	ALT_REF_LOCI_1
+REGION317	3	187190322	187659631	fix-patch	MU273346.1	NW_025791769.1	PATCHES
+MUCIN_REGION_2	3	195629504	195827492	alt-scaffold	KI270779.1	NT_187532.1	ALT_REF_LOCI_1
+MUCIN_REGION_2	3	195629504	195827492	alt-scaffold	KI270895.1	NT_187649.1	ALT_REF_LOCI_2
+MUCIN_REGION_2	3	195629504	195827492	alt-scaffold	KI270924.1	NT_187678.1	ALT_REF_LOCI_3
+MUCIN_REGION_2	3	195629504	195827492	alt-scaffold	KI270934.1	NT_187688.1	ALT_REF_LOCI_4
+MUCIN_REGION_2	3	195629504	195827492	alt-scaffold	KI270935.1	NT_187689.1	ALT_REF_LOCI_5
+MUCIN_REGION_2	3	195629504	195827492	alt-scaffold	KI270936.1	NT_187690.1	ALT_REF_LOCI_6
+MUCIN_REGION_2	3	195629504	195827492	alt-scaffold	KI270937.1	NT_187691.1	ALT_REF_LOCI_7
+REGION127	3	197397856	197558882	alt-scaffold	KI270782.1	NT_187534.1	ALT_REF_LOCI_1
+REGION128	3	198047549	198235559	alt-scaffold	KI270784.1	NT_187539.1	ALT_REF_LOCI_1
+REGION282	4	1421767	1660835	fix-patch	ML143344.1	NW_021159990.1	PATCHES
+REGION279	4	8728948	8923891	fix-patch	ML143347.1	NW_021159993.1	PATCHES
+REGION222	4	14931450	15019028	novel-patch	KQ090013.1	NW_013171799.1	PATCHES
+REGION129	4	21521367	21734410	alt-scaffold	KI270790.1	NT_187540.1	ALT_REF_LOCI_1
+GBA3	4	22678208	22883898	fix-patch	MU273351.1	NW_025791774.1	PATCHES
+REGION280	4	31788957	31855391	fix-patch	ML143346.1	NW_021159992.1	PATCHES
+REGION278	4	32810823	32942229	fix-patch	ML143348.1	NW_021159994.1	PATCHES
+REGION6	4	34517955	34883858	alt-scaffold	GL383528.1	NW_003315915.1	ALT_REF_LOCI_1
+REGION281	4	49074722	49336924	fix-patch	ML143345.1	NW_021159991.1	PATCHES
+CEN4	4	49708101	51743951	CEN	na	na	na
+REGION130	4	55678095	55785754	alt-scaffold	KI270787.1	NT_187541.1	ALT_REF_LOCI_1
+REGION283	4	58666869	58984981	fix-patch	ML143349.1	NW_021159995.1	PATCHES
+REGION223	4	65880454	66040277	novel-patch	KQ090014.1	NW_013171800.1	PATCHES
+UGT2B17	4	68306359	69010457	alt-scaffold	GL000257.2	NT_167250.2	ALT_REF_LOCI_1
+REGION224	4	69959865	70191926	novel-patch	KQ090015.1	NW_013171801.1	PATCHES
+REGION131	4	120164199	120317014	alt-scaffold	KI270788.1	NT_187544.1	ALT_REF_LOCI_1
+PRSS48	4	151063270	151371951	novel-patch	MU273349.1	NW_025791772.1	PATCHES
+REGION236	4	154079465	154493046	novel-patch	KV766193.1	NW_017363814.1	PATCHES
+REGION7	4	155835378	155987264	alt-scaffold	GL383527.1	NW_003315914.1	ALT_REF_LOCI_1
+REGION132	4	186920392	187048061	alt-scaffold	KI270785.1	NT_187542.1	ALT_REF_LOCI_1
+REGION133	4	188341423	188542359	alt-scaffold	KI270789.1	NT_187545.1	ALT_REF_LOCI_1
+REGION318	4	188991774	189102649	fix-patch	MU273350.1	NW_025791773.1	PATCHES
+REGION134	4	189361858	190204555	alt-scaffold	KI270786.1	NT_187543.1	ALT_REF_LOCI_1
+REGION134	4	189361858	190204555	alt-scaffold	KI270896.1	NT_187650.1	ALT_REF_LOCI_2
+REGION134	4	189361858	190204555	alt-scaffold	KI270925.1	NT_187679.1	ALT_REF_LOCI_3
+REGION134	4	189361858	190204555	fix-patch	KQ983257.1	NW_015495300.1	PATCHES
+REGION134	4	189361858	190204555	novel-patch	KQ983258.1	NW_015495301.1	PATCHES
+REGION135	5	502435	626896	alt-scaffold	KI270793.1	NT_187550.1	ALT_REF_LOCI_1
+SLC12A7	5	981494	1161361	alt-scaffold	KI270792.1	NT_187548.1	ALT_REF_LOCI_1
+SLC6A3	5	1318299	1509772	alt-scaffold	KI270791.1	NT_187547.1	ALT_REF_LOCI_1
+REGION251	5	3768476	3899281	novel-patch	KZ208910.1	NW_018654712.1	PATCHES
+UBE2QL1	5	6297827	6504595	fix-patch	MU273353.1	NW_025791776.1	PATCHES
+REGION9	5	12681426	12744010	alt-scaffold	GL383532.1	NW_003315920.1	ALT_REF_LOCI_1
+REGION193	5	21098347	21230960	novel-patch	KN196477.1	NW_009646199.1	PATCHES
+GUSBP1	5	21448370	21713081	novel-patch	KV575243.1	NW_016107297.1	PATCHES
+PRDM9	5	23369984	23672469	novel-patch	MU273356.1	NW_025791779.1	PATCHES
+REGION61	5	29036498	29254469	alt-scaffold	GL949742.1	NW_003571036.1	ALT_REF_LOCI_1
+REGION136	5	33800665	33963236	alt-scaffold	KI270794.1	NT_187551.1	ALT_REF_LOCI_1
+CEN5	5	46485901	50059807	CEN	na	na	na
+SMA	5	69216819	71614443	alt-scaffold	GL339449.2	NW_003315917.2	ALT_REF_LOCI_1
+SMA	5	69216819	71614443	alt-scaffold	KI270897.1	NT_187651.1	ALT_REF_LOCI_2
+MCTP1	5	95169857	95254491	alt-scaffold	GL383530.1	NW_003315918.1	ALT_REF_LOCI_1
+REGION137	5	125279466	125444151	alt-scaffold	KI270796.1	NT_187549.1	ALT_REF_LOCI_1
+ECSCR	5	139409472	139500161	fix-patch	ML143350.1	NW_021159996.1	PATCHES
+PCDHB@	5	140764825	141273156	fix-patch	MU273355.1	NW_025791778.1	PATCHES
+REGION8	5	162373667	162541648	alt-scaffold	GL383531.1	NW_003315919.1	ALT_REF_LOCI_1
+REGION138	5	177865465	177996111	alt-scaffold	KI270795.1	NT_187546.1	ALT_REF_LOCI_1
+REGION138	5	177865465	177996111	alt-scaffold	KI270898.1	NT_187652.1	ALT_REF_LOCI_2
+REGION234	5	179235294	179907499	fix-patch	KV575244.1	NW_016107298.1	PATCHES
+REGION319	5	181448822	181478259	fix-patch	MU273352.1	NW_025791775.1	PATCHES
+GCNT2	6	10489117	10731912	fix-patch	KZ208911.1	NW_018654713.1	PATCHES
+REGION225	6	13101650	13179113	novel-patch	KQ090017.1	NW_013171803.1	PATCHES
+REGION320	6	26453821	26859000	novel-patch	MU273357.1	NW_025791780.1	PATCHES
+MHC	6	28510120	33480577	alt-scaffold	GL000250.2	NT_167244.2	ALT_REF_LOCI_1
+MHC	6	28510120	33480577	alt-scaffold	GL000251.2	NT_113891.3	ALT_REF_LOCI_2
+MHC	6	28510120	33480577	alt-scaffold	GL000252.2	NT_167245.2	ALT_REF_LOCI_3
+MHC	6	28510120	33480577	alt-scaffold	GL000253.2	NT_167246.2	ALT_REF_LOCI_4
+MHC	6	28510120	33480577	alt-scaffold	GL000254.2	NT_167247.2	ALT_REF_LOCI_5
+MHC	6	28510120	33480577	alt-scaffold	GL000255.2	NT_167248.2	ALT_REF_LOCI_6
+MHC	6	28510120	33480577	alt-scaffold	GL000256.2	NT_167249.2	ALT_REF_LOCI_7
+MHC	6	28510120	33480577	alt-scaffold	KI270758.1	NT_187692.1	ALT_REF_LOCI_8
+CEN6	6	58553889	59829934	CEN	na	na	na
+REGION211	6	61123605	61470683	fix-patch	KQ031387.1	NW_012132918.1	PATCHES
+REGION139	6	65774814	65944033	alt-scaffold	KI270800.1	NT_187555.1	ALT_REF_LOCI_1
+REGION194	6	67533466	67796090	fix-patch	KN196478.1	NW_009646200.1	PATCHES
+REGION140	6	68262879	68402208	alt-scaffold	KI270799.1	NT_187554.1	ALT_REF_LOCI_1
+REGION10	6	79350008	79446911	alt-scaffold	GL383533.1	NW_003315921.1	ALT_REF_LOCI_1
+REGION214	6	82140389	82375901	fix-patch	KQ090016.1	NW_013171802.1	PATCHES
+CASP8AP2	6	89804656	89941739	fix-patch	KV766194.1	NW_017363815.1	PATCHES
+REGION284	6	95012984	95133130	fix-patch	ML143351.1	NW_021159997.1	PATCHES
+REGION141	6	127654803	128521146	alt-scaffold	KI270801.1	NT_187556.1	ALT_REF_LOCI_1
+REGION142	6	166220580	166285980	alt-scaffold	KI270802.1	NT_187557.1	ALT_REF_LOCI_1
+REGION99	6	168796076	168951646	alt-scaffold	KB021644.2	NW_004166862.2	ALT_REF_LOCI_1
+REGION143	6	169724799	169919706	alt-scaffold	KI270797.1	NT_187552.1	ALT_REF_LOCI_1
+REGION144	6	170272763	170535221	alt-scaffold	KI270798.1	NT_187553.1	ALT_REF_LOCI_1
+REGION145	7	10001	279542	alt-scaffold	KI270804.1	NT_187558.1	ALT_REF_LOCI_1
+REGION145	7	10001	279542	alt-scaffold	KI270899.1	NT_187653.1	ALT_REF_LOCI_2
+REGION145	7	10001	279542	fix-patch	ML143352.1	NW_021159998.1	PATCHES
+REGION267	7	9026358	9192359	novel-patch	KZ559106.1	NW_019805493.1	PATCHES
+REGION321	7	54005772	54470182	novel-patch	MU273358.1	NW_025791781.1	PATCHES
+CEN7	7	58169654	60828234	CEN	na	na	na
+HET7	7	61377789	61528020	HET	na	na	na
+REGION146	7	76500982	76722751	alt-scaffold	KI270809.1	NT_187561.1	ALT_REF_LOCI_1
+REGION241	7	99092372	99228806	fix-patch	KV880764.1	NW_017852929.1	PATCHES
+REGION147	7	103086563	103242097	alt-scaffold	KI270806.1	NT_187559.1	ALT_REF_LOCI_1
+REGION242	7	107154479	107622612	fix-patch	KV880765.1	NW_017852930.1	PATCHES
+REGION11	7	141633409	141746583	alt-scaffold	GL383534.2	NW_003315922.2	ALT_REF_LOCI_1
+TRB	7	142038121	143088503	alt-scaffold	KI270803.1	NT_187562.1	ALT_REF_LOCI_1
+REGION252	7	143380637	144630931	fix-patch	KZ208912.1	NW_018654714.1	PATCHES
+REGION252	7	143380637	144630931	novel-patch	KZ208913.1	NW_018654715.1	PATCHES
+REGION148	7	148214874	148487860	alt-scaffold	KI270808.1	NT_187564.1	ALT_REF_LOCI_1
+REGION212	7	154422352	154602937	fix-patch	KQ031388.1	NW_012132919.1	PATCHES
+REGION149	7	157697532	157820586	alt-scaffold	KI270807.1	NT_187563.1	ALT_REF_LOCI_1
+REGION150	7	158267495	158477174	alt-scaffold	KI270805.1	NT_187560.1	ALT_REF_LOCI_1
+REGION151	8	718410	2817440	alt-scaffold	KI270811.1	NT_187565.1	ALT_REF_LOCI_1
+REGION151	8	718410	2817440	alt-scaffold	KI270812.1	NT_187568.1	ALT_REF_LOCI_1
+REGION151	8	718410	2817440	alt-scaffold	KI270818.1	NT_187572.1	ALT_REF_LOCI_1
+REGION151	8	718410	2817440	alt-scaffold	KI270821.1	NT_187576.1	ALT_REF_LOCI_1
+REGION151	8	718410	2817440	alt-scaffold	KI270900.1	NT_187654.1	ALT_REF_LOCI_2
+REGION151	8	718410	2817440	alt-scaffold	KI270901.1	NT_187655.1	ALT_REF_LOCI_2
+REGION151	8	718410	2817440	alt-scaffold	KI270926.1	NT_187680.1	ALT_REF_LOCI_3
+REGION322	8	6064671	6494266	fix-patch	MU273362.1	NW_025791785.1	PATCHES
+DEFENSIN_REGION_1	8	6604731	13171905	alt-scaffold	KI270813.1	NT_187570.1	ALT_REF_LOCI_1
+DEFENSIN_REGION_1	8	6604731	13171905	fix-patch	KZ208915.1	NW_018654717.1	PATCHES
+REGION243	8	21395510	21659610	fix-patch	KV880767.1	NW_017852932.1	PATCHES
+ADAM5	8	39094318	39873856	alt-scaffold	KI270822.1	NT_187577.1	ALT_REF_LOCI_1
+CEN8	8	44033745	45877265	CEN	na	na	na
+REGION323	8	48065378	48214652	fix-patch	MU273359.1	NW_025791782.1	PATCHES
+REGION244	8	57022151	57173350	fix-patch	KV880766.1	NW_017852931.1	PATCHES
+REGION152	8	57173351	57303398	alt-scaffold	KI270814.1	NT_187566.1	ALT_REF_LOCI_1
+REGION324	8	124465412	124571955	fix-patch	MU273361.1	NW_025791784.1	PATCHES
+REGION153	8	128554723	128925740	alt-scaffold	KI270810.1	NT_187567.1	ALT_REF_LOCI_1
+REGION268	8	129724678	129818699	novel-patch	KZ559107.1	NW_019805494.1	PATCHES
+REGION154	8	141333447	141540817	alt-scaffold	KI270819.1	NT_187574.1	ALT_REF_LOCI_1
+REGION154	8	141333447	141540817	fix-patch	MU273363.1	NW_025791786.1	PATCHES
+REGION155	8	141766834	141800272	alt-scaffold	KI270820.1	NT_187575.1	ALT_REF_LOCI_1
+REGION156	8	143009713	143163398	alt-scaffold	KI270817.1	NT_187573.1	ALT_REF_LOCI_1
+REGION157	8	143509961	143828794	alt-scaffold	KI270816.1	NT_187571.1	ALT_REF_LOCI_1
+SLC39A4	8	144269398	144434518	fix-patch	KZ208914.1	NW_018654716.1	PATCHES
+REGION158	8	144628750	144757761	alt-scaffold	KI270815.1	NT_187569.1	ALT_REF_LOCI_1
+REGION325	8	145042560	145078636	fix-patch	MU273360.1	NW_025791783.1	PATCHES
+REGION14	9	7428994	7577169	alt-scaffold	GL383539.1	NW_003315928.1	ALT_REF_LOCI_1
+REGION226	9	8983671	9142737	novel-patch	KQ090018.1	NW_013171804.1	PATCHES
+REGION227	9	24949709	25079413	novel-patch	KQ090019.1	NW_013171805.1	PATCHES
+CEN9	9	43236168	45518558	CEN	na	na	na
+CNTNAP3C	9	61281967	61468808	fix-patch	MU273366.1	NW_025791789.1	PATCHES
+REGION13	9	69413743	69477097	alt-scaffold	GL383540.1	NW_003315929.1	ALT_REF_LOCI_1
+MAMDC2	9	70024113	70189318	alt-scaffold	GL383541.1	NW_003315930.1	ALT_REF_LOCI_1
+AFCT10	9	70701802	70719794	na	na	na	na
+REGION15	9	88179047	88227980	alt-scaffold	GL383542.1	NW_003315931.1	ALT_REF_LOCI_1
+REGION326	9	88519456	88854463	fix-patch	MU273364.1	NW_025791787.1	PATCHES
+ASPN	9	92165272	92647523	fix-patch	MU273365.1	NW_025791788.1	PATCHES
+LPPR1	9	100948798	101378291	alt-scaffold	KI270823.1	NT_187578.1	ALT_REF_LOCI_1
+ABO	9	133174055	133504070	fix-patch	KN196479.1	NW_009646201.1	PATCHES
+REGION285	9	134176072	134201322	fix-patch	ML143353.1	NW_021159999.1	PATCHES
+REGION16	10	27285655	27417608	alt-scaffold	GL383545.1	NW_003315934.1	ALT_REF_LOCI_1
+REGION290	10	38363173	38781896	fix-patch	ML143354.1	NW_021160000.1	PATCHES
+REGION205	10	38918270	39338430	fix-patch	KN538367.1	NW_011332694.1	PATCHES
+CEN10	10	39686683	41593521	CEN	na	na	na
+REGION159	10	42103240	42298939	alt-scaffold	KI270824.1	NT_187579.1	ALT_REF_LOCI_1
+REGION18	10	45175233	45468971	alt-scaffold	GL383546.1	NW_003315935.1	ALT_REF_LOCI_1
+REGION298	10	47739150	48074662	fix-patch	ML143355.1	NW_021160001.1	PATCHES
+REGION216	10	65503225	65684914	novel-patch	KQ090020.1	NW_013171806.1	PATCHES
+REGION195	10	74797382	75073121	fix-patch	KN196480.1	NW_009646202.1	PATCHES
+REGION160	10	77761309	77931226	na	na	na	na
+PTEN	10	87784179	88048756	fix-patch	KQ090021.1	NW_013171807.1	PATCHES
+PNLIPRP2	10	116589005	116785266	fix-patch	MU273367.1	NW_025791790.1	PATCHES
+REGION204	10	124109957	124195365	fix-patch	KN538366.1	NW_011332693.1	PATCHES
+REGION203	10	131588434	131607480	fix-patch	KN538365.1	NW_011332692.1	PATCHES
+REGION104	11	470360	678681	alt-scaffold	KI270832.1	NT_187586.1	ALT_REF_LOCI_1
+MUCIN_REGION_1	11	937258	1207515	alt-scaffold	KI270902.1	NT_187656.1	ALT_REF_LOCI_2
+MUCIN_REGION_1	11	937258	1207515	alt-scaffold	KI270927.1	NT_187681.1	ALT_REF_LOCI_3
+MUCIN_REGION_1	11	937258	1207515	fix-patch	KQ759759.2	NW_015148966.2	PATCHES
+KRTAP_REGION_2	11	1265735	1740879	alt-scaffold	KI270830.1	NT_187584.1	ALT_REF_LOCI_1
+KRTAP_REGION_2	11	1265735	1740879	alt-scaffold	KI270903.1	NT_187657.1	ALT_REF_LOCI_2
+KRTAP_REGION_2	11	1265735	1740879	fix-patch	MU273369.1	NW_025791792.1	PATCHES
+REGION302	11	1809498	2077600	fix-patch	ML143358.1	NW_021160004.1	PATCHES
+REGION105	11	2767814	3065846	alt-scaffold	KI270831.1	NT_187585.1	ALT_REF_LOCI_1
+OR52E1	11	5003681	5126401	fix-patch	MU273371.1	NW_025791794.1	PATCHES
+OLFACTORY_REGION_2	11	7779133	7972558	alt-scaffold	KI270829.1	NT_187583.1	ALT_REF_LOCI_1
+OLFACTORY_REGION_2	11	7779133	7972558	novel-patch	KN538368.1	NW_011332695.1	PATCHES
+REGION288	11	18251175	18419476	fix-patch	ML143360.1	NW_021160006.1	PATCHES
+REGION19	11	25170407	25319080	alt-scaffold	GL383547.1	NW_003315936.1	ALT_REF_LOCI_1
+REGION269	11	47572175	47847277	fix-patch	KZ559109.1	NW_019805496.1	PATCHES
+REGION270	11	49535823	49841095	fix-patch	KZ559108.1	NW_019805495.1	PATCHES
+OLFACTORY_REGION_4	11	49958373	50099251	fix-patch	KV766195.1	NW_017363816.1	PATCHES
+CEN11	11	51078349	54425074	CEN	na	na	na
+OLFACTORY_REGION_1	11	56189252	56873567	alt-scaffold	JH159136.1	NW_003871073.1	ALT_REF_LOCI_1
+OLFACTORY_REGION_1	11	56189252	56873567	alt-scaffold	JH159137.1	NW_003871074.1	ALT_REF_LOCI_1
+OLFACTORY_REGION_1	11	56189252	56873567	fix-patch	MU273370.1	NW_025791793.1	PATCHES
+REGION271	11	59910346	60087289	novel-patch	KZ559111.1	NW_019805498.1	PATCHES
+REGION106	11	69165291	69229344	alt-scaffold	KI270827.1	NT_187582.1	ALT_REF_LOCI_1
+PPFIA1	11	70244180	70455787	fix-patch	ML143359.1	NW_021160005.1	PATCHES
+REGION286	11	87928891	88117772	fix-patch	ML143357.1	NW_021160003.1	PATCHES
+REGION272	11	90093878	90364703	novel-patch	KZ559110.1	NW_019805497.1	PATCHES
+REGION215	11	92232311	92410192	fix-patch	KQ090022.1	NW_013171808.1	PATCHES
+REGION287	11	96542549	96587148	fix-patch	ML143356.1	NW_021160002.1	PATCHES
+CASP12	11	104700868	104962061	novel-patch	MU273368.1	NW_025791791.1	PATCHES
+SLC37A4	11	118978401	119087276	fix-patch	KN196481.1	NW_009646203.1	PATCHES
+REGION107	11	134773600	134962792	alt-scaffold	KI270826.1	NT_187581.1	ALT_REF_LOCI_1
+REGION50	12	10001	173298	alt-scaffold	GL877875.1	NW_003571049.1	ALT_REF_LOCI_1
+REGION217	12	1033530	1135924	novel-patch	KQ090023.1	NW_013171809.1	PATCHES
+REGION253	12	1657857	2698722	fix-patch	KZ208916.1	NW_018654718.1	PATCHES
+C1R	12	7071546	7264845	fix-patch	ML143362.1	NW_021160008.1	PATCHES
+PRH1_PRR4	12	10801295	11377386	alt-scaffold	GL877876.1	NW_003571050.1	ALT_REF_LOCI_1
+PRH1_PRR4	12	10801295	11377386	alt-scaffold	KI270837.1	NT_187588.1	ALT_REF_LOCI_1
+PRH1_PRR4	12	10801295	11377386	alt-scaffold	KI270904.1	NT_187658.1	ALT_REF_LOCI_2
+REGION206	12	12031003	12572035	fix-patch	KN538369.1	NW_011332696.1	PATCHES
+REGION196	12	17717409	17928910	fix-patch	KN196482.1	NW_009646204.1	PATCHES
+REGION21	12	27996034	28110778	alt-scaffold	GL383549.1	NW_003315938.1	ALT_REF_LOCI_1
+OVOS2	12	31111480	31347345	alt-scaffold	KI270835.1	NT_187587.1	ALT_REF_LOCI_1
+CEN12	12	34769408	37185252	CEN	na	na	na
+REGION327	12	53276241	53380787	fix-patch	MU273372.1	NW_025791795.1	PATCHES
+REGION22	12	57932737	58092755	alt-scaffold	GL383550.2	NW_003315939.2	ALT_REF_LOCI_1
+REGION23	12	58929265	59060870	alt-scaffold	GL383552.1	NW_003315941.1	ALT_REF_LOCI_1
+REGION255	12	86094144	86261655	novel-patch	KZ208918.1	NW_018654720.1	PATCHES
+REGION232	12	86768210	87083988	fix-patch	KQ759760.1	NW_015148967.1	PATCHES
+REGION24	12	101111599	101258295	alt-scaffold	GL383553.2	NW_003315942.2	ALT_REF_LOCI_1
+REGION254	12	121594225	121658918	fix-patch	KZ208917.1	NW_018654719.1	PATCHES
+REGION207	12	122057735	122145576	fix-patch	KN538370.1	NW_011332697.1	PATCHES
+REGION161	12	123826509	123945954	alt-scaffold	KI270834.1	NT_187590.1	ALT_REF_LOCI_1
+REGION20	12	126227198	126405474	alt-scaffold	GL383551.1	NW_003315940.1	ALT_REF_LOCI_1
+REGION273	12	127053477	127193247	novel-patch	KZ559112.1	NW_019805499.1	PATCHES
+REGION162	12	130323076	130394967	alt-scaffold	KI270833.1	NT_187589.1	ALT_REF_LOCI_1
+REGION163	12	131543020	131584984	alt-scaffold	KI270836.1	NT_187591.1	ALT_REF_LOCI_1
+GALNT9	12	132092972	132391208	fix-patch	ML143361.1	NW_021160007.1	PATCHES
+NOR_CHR_13	13	15590088	16000000	fix-patch	ML143366.1	NW_021160012.1	PATCHES
+CEN13	13	16000001	18051248	CEN	na	na	na
+BAGE5	13	18171249	18358106	fix-patch	KN538372.1	NW_011332699.1	PATCHES
+REGION164	13	18698351	18884136	alt-scaffold	KI270840.1	NT_187594.1	ALT_REF_LOCI_1
+REGION165	13	25652362	25828680	alt-scaffold	KI270839.1	NT_187593.1	ALT_REF_LOCI_1
+REGION166	13	70341886	70442876	alt-scaffold	KI270843.1	NT_187597.1	ALT_REF_LOCI_1
+REGION218	13	84294441	84452423	novel-patch	KQ090024.1	NW_013171810.1	PATCHES
+REGION197	13	86200738	86292877	fix-patch	ML143363.1	NW_021160009.1	PATCHES
+REGION197	13	86200738	86292877	fix-patch	KN196483.1	NW_009646205.1	PATCHES
+AFCT12	13	86252980	86269524	na	na	na	na
+REGION167	13	89598964	89764093	alt-scaffold	KI270841.1	NT_187595.1	ALT_REF_LOCI_1
+REGION208	13	100900735	101049613	fix-patch	KN538373.1	NW_011332700.1	PATCHES
+REGION219	13	108604134	108722945	novel-patch	KQ090025.1	NW_013171811.1	PATCHES
+AFCT11	13	111753856	111793441	na	na	na	na
+REGION289	13	111786909	111851680	fix-patch	ML143364.1	NW_021160010.1	PATCHES
+REGION168	13	112182875	112505943	alt-scaffold	KI270838.1	NT_187592.1	ALT_REF_LOCI_1
+REGION169	13	113649178	113763795	alt-scaffold	KI270842.1	NT_187596.1	ALT_REF_LOCI_1
+REGION169	13	113649178	113763795	fix-patch	ML143365.1	NW_021160011.1	PATCHES
+REGION209	13	113936976	114147229	fix-patch	KN538371.1	NW_011332698.1	PATCHES
+NOR_CHR_14	14	15600817	16000000	fix-patch	ML143367.1	NW_021160013.1	PATCHES
+CEN14	14	16000001	18173523	CEN	na	na	na
+OR4Q2_OR11H7	14	19797319	20519964	fix-patch	MU273373.1	NW_025791796.1	PATCHES
+REGION256	14	23699022	24389954	fix-patch	KZ208920.1	NW_018654722.1	PATCHES
+REGION291	14	46309691	46567274	novel-patch	ML143368.1	NW_021160014.1	PATCHES
+REGION257	14	63664049	63829157	novel-patch	KZ208919.1	NW_018654721.1	PATCHES
+REGION170	14	91535865	91854371	alt-scaffold	KI270844.1	NT_187598.1	ALT_REF_LOCI_1
+IGH	14	92885439	94394539	alt-scaffold	KI270847.1	NT_187601.1	ALT_REF_LOCI_1
+SERPIN_REGION_1	14	104449322	104622880	alt-scaffold	KI270845.1	NT_187599.1	ALT_REF_LOCI_1
+REGION171	14	105533003	106860219	alt-scaffold	KI270846.1	NT_187600.1	ALT_REF_LOCI_1
+NOR_CHR_15	15	16603485	17000000	fix-patch	ML143372.1	NW_021160018.1	PATCHES
+CEN15	15	17000001	19725254	CEN	na	na	na
+PRADER_WILLI	15	19775255	24552710	alt-scaffold	KI270852.1	NT_187602.1	ALT_REF_LOCI_1
+PRADER_WILLI	15	19775255	24552710	alt-scaffold	KI270848.1	NT_187603.1	ALT_REF_LOCI_1
+PRADER_WILLI	15	19775255	24552710	alt-scaffold	KI270851.1	NT_187604.1	ALT_REF_LOCI_1
+PRADER_WILLI	15	19775255	24552710	alt-scaffold	KI270906.1	NT_187659.1	ALT_REF_LOCI_2
+PRADER_WILLI	15	19775255	24552710	fix-patch	ML143371.1	NW_021160017.1	PATCHES
+REGION25	15	27865714	32946929	alt-scaffold	GL383554.1	NW_003315943.1	ALT_REF_LOCI_1
+REGION25	15	27865714	32946929	alt-scaffold	KI270905.1	NT_187660.1	ALT_REF_LOCI_2
+REGION25	15	27865714	32946929	novel-patch	KQ031389.1	NW_012132920.1	PATCHES
+REGION328	15	34261291	34457915	novel-patch	MU273375.1	NW_025791798.1	PATCHES
+TRIM69	15	44676664	44913053	alt-scaffold	KI270849.1	NT_187605.1	ALT_REF_LOCI_1
+MEGF11	15	65908183	66284818	alt-scaffold	GL383555.2	NW_003315944.2	ALT_REF_LOCI_1
+REGION299	15	74172576	74539995	fix-patch	ML143370.1	NW_021160016.1	PATCHES
+REGION172	15	82289984	82641774	alt-scaffold	KI270850.1	NT_187606.1	ALT_REF_LOCI_1
+REGION329	15	83394207	84662728	fix-patch	MU273374.1	NW_025791797.1	PATCHES
+REGION303	15	101893864	101981189	fix-patch	ML143369.1	NW_021160015.1	PATCHES
+RAB11FIP3	16	400855	531525	alt-scaffold	KI270854.1	NT_187610.1	ALT_REF_LOCI_1
+REGION173	16	1871895	2021571	alt-scaffold	KI270856.1	NT_187609.1	ALT_REF_LOCI_1
+REGION173	16	1871895	2021571	fix-patch	MU273376.1	NW_025791799.1	PATCHES
+REGION221	16	2820536	2873621	novel-patch	KQ090026.1	NW_013171812.1	PATCHES
+PAM16	16	4299637	4530534	alt-scaffold	KI270855.1	NT_187608.1	ALT_REF_LOCI_1
+REGION174	16	14427144	16998739	alt-scaffold	KI270853.1	NT_187607.1	ALT_REF_LOCI_1
+FRA16A	16	16998740	17478916	fix-patch	KZ559113.1	NW_019805500.1	PATCHES
+REGION245	16	21176310	22760988	fix-patch	KV880768.1	NW_017852933.1	PATCHES
+SLC5A11	16	24749301	25017484	fix-patch	ML143373.1	NW_021160019.1	PATCHES
+AFCT13	16	34339330	34521510	na	na	na	na
+CEN16	16	36311159	38280682	CEN	na	na	na
+REGION26	16	55772981	55968548	alt-scaffold	GL383556.1	NW_003315945.1	ALT_REF_LOCI_1
+SNTB2	16	69140151	69224690	alt-scaffold	GL383557.1	NW_003315946.1	ALT_REF_LOCI_1
+REGION220	16	71137292	71399966	novel-patch	KQ090027.1	NW_013171813.1	PATCHES
+CTRB1_CTRB2	16	75169811	75248387	novel-patch	KZ208921.1	NW_018654723.1	PATCHES
+REGION213	16	75930096	76091406	novel-patch	KQ031390.1	NW_012132921.1	PATCHES
+REGION330	16	80951762	81286736	fix-patch	MU273377.1	NW_025791800.1	PATCHES
+DOC2B_RPH3AL	17	60001	402637	alt-scaffold	GL383563.3	NW_003315952.3	ALT_REF_LOCI_1
+DOC2B_RPH3AL	17	60001	402637	alt-scaffold	KI270907.1	NT_187662.1	ALT_REF_LOCI_2
+RFLNB	17	402638	722442	fix-patch	KV766196.1	NW_017363817.1	PATCHES
+ABR	17	960754	1449331	alt-scaffold	KI270862.1	NT_187613.1	ALT_REF_LOCI_1
+ABR	17	960754	1449331	alt-scaffold	KI270910.1	NT_187664.1	ALT_REF_LOCI_2
+WDR81	17	1569973	1767739	alt-scaffold	KI270861.1	NT_187611.1	ALT_REF_LOCI_1
+REGION300	17	7244673	7379543	fix-patch	ML143374.1	NW_021160020.1	PATCHES
+POLR2A	17	7379544	7534268	fix-patch	KV575245.1	NW_016107299.1	PATCHES
+REGION238	17	18239627	18506313	novel-patch	KV766198.1	NW_017363819.1	PATCHES
+CEN17	17	22813680	26885980	CEN	na	na	na
+NF1	17	30920827	31459679	fix-patch	MU273380.1	NW_025791803.1	PATCHES
+CCL5_TBC1D3	17	35765469	38841755	alt-scaffold	KI270857.1	NT_187614.1	ALT_REF_LOCI_1
+CCL5_TBC1D3	17	35765469	38841755	alt-scaffold	KI270909.1	NT_187661.1	ALT_REF_LOCI_2
+KRTAP_REGION_1	17	40850733	41432935	alt-scaffold	GL383564.2	NW_003315953.2	ALT_REF_LOCI_1
+KRTAP_REGION_1	17	40850733	41432935	alt-scaffold	JH159146.1	NW_003871091.1	ALT_REF_LOCI_1
+KRTAP_REGION_1	17	40850733	41432935	alt-scaffold	JH159147.1	NW_003871092.1	ALT_REF_LOCI_1
+KRTAP_REGION_1	17	40850733	41432935	alt-scaffold	JH159148.1	NW_003871093.1	ALT_REF_LOCI_2
+KRTAP_REGION_1	17	40850733	41432935	novel-patch	MU273378.1	NW_025791801.1	PATCHES
+MAPT	17	45309498	46903773	alt-scaffold	GL000258.2	NT_167251.2	ALT_REF_LOCI_1
+MAPT	17	45309498	46903773	alt-scaffold	KI270908.1	NT_187663.1	ALT_REF_LOCI_2
+REGION237	17	52434177	52673566	novel-patch	KV766197.1	NW_017363818.1	PATCHES
+REGION28	17	70306278	70524219	alt-scaffold	GL383565.1	NW_003315954.1	ALT_REF_LOCI_1
+REGION175	17	71584518	71819311	alt-scaffold	KI270858.1	NT_187615.1	ALT_REF_LOCI_1
+REGION176	17	72833331	72935743	alt-scaffold	KI270859.1	NT_187616.1	ALT_REF_LOCI_1
+REGION176	17	72833331	72935743	novel-patch	KZ559114.1	NW_019805501.1	PATCHES
+CD300H	17	74423553	74596161	fix-patch	MU273383.1	NW_025791806.1	PATCHES
+REGION30	17	77220730	77299326	alt-scaffold	GL383566.1	NW_003315955.1	ALT_REF_LOCI_1
+REGION331	17	79977090	80210172	fix-patch	MU273379.1	NW_025791802.1	PATCHES
+REGION332	17	81345363	81531421	fix-patch	MU273382.1	NW_025791805.1	PATCHES
+REGION301	17	81736740	81843202	fix-patch	ML143375.1	NW_021160021.1	PATCHES
+B3GNTL1	17	82922720	83103577	alt-scaffold	KI270860.1	NT_187612.1	ALT_REF_LOCI_1
+REGION333	17	83103578	83247441	fix-patch	MU273381.1	NW_025791804.1	PATCHES
+REGION274	18	1744182	1884837	novel-patch	KZ559116.1	NW_019805503.1	PATCHES
+CEN18	18	15460900	20861206	CEN	na	na	na
+REGION230	18	22388680	22588100	novel-patch	KQ458385.1	NW_014040928.1	PATCHES
+REGION177	18	43667277	43773892	alt-scaffold	KI270864.1	NT_187618.1	ALT_REF_LOCI_1
+SLC14A2_AS1	18	45379886	45610729	fix-patch	KZ559115.1	NW_019805502.1	PATCHES
+CTIF	18	48514982	48918117	fix-patch	KQ090028.1	NW_013171814.1	PATCHES
+REGION31	18	50292194	50574792	alt-scaffold	GL383567.1	NW_003315956.1	ALT_REF_LOCI_1
+REGION32	18	51662936	51821642	alt-scaffold	GL383570.1	NW_003315959.1	ALT_REF_LOCI_1
+REGION33	18	67423723	67552551	alt-scaffold	GL383571.1	NW_003315960.1	ALT_REF_LOCI_1
+REGION258	18	70423088	70510260	fix-patch	KZ208922.1	NW_018654724.1	PATCHES
+REGION34	18	72933122	73024781	alt-scaffold	GL383568.1	NW_003315957.1	ALT_REF_LOCI_1
+REGION35	18	78493467	78664469	alt-scaffold	GL383569.1	NW_003315958.1	ALT_REF_LOCI_1
+REGION35	18	78493467	78664469	alt-scaffold	KI270912.1	NT_187665.1	ALT_REF_LOCI_2
+REGION36	18	78934886	79088997	alt-scaffold	GL383572.1	NW_003315961.1	ALT_REF_LOCI_1
+REGION36	18	78934886	79088997	alt-scaffold	KI270911.1	NT_187666.1	ALT_REF_LOCI_2
+REGION178	18	79563122	79725366	alt-scaffold	KI270863.1	NT_187617.1	ALT_REF_LOCI_1
+ELANE	19	821158	881412	alt-scaffold	KI270868.1	NT_187622.1	ALT_REF_LOCI_1
+SBNO2	19	1107414	1158195	alt-scaffold	KI270865.1	NT_187621.1	ALT_REF_LOCI_1
+FUT3	19	5826400	5915642	novel-patch	MU273387.1	NW_025791810.1	PATCHES
+MUC16	19	8765058	9083986	fix-patch	MU273384.1	NW_025791807.1	PATCHES
+SAMD1	19	13788160	14281006	fix-patch	ML143376.1	NW_021160022.1	PATCHES
+ZNF66	19	20663141	21042381	alt-scaffold	GL383573.1	NW_003315962.1	ALT_REF_LOCI_1
+REGION37	19	21648290	21809032	alt-scaffold	GL383575.2	NW_003315964.2	ALT_REF_LOCI_1
+REGION39	19	22120850	22300666	alt-scaffold	GL383576.1	NW_003315965.1	ALT_REF_LOCI_1
+CEN19	19	24498981	27190874	CEN	na	na	na
+REGION38	19	34152260	34300950	alt-scaffold	GL383574.1	NW_003315963.1	ALT_REF_LOCI_1
+GPI	19	34350807	34392977	alt-scaffold	KI270866.1	NT_187619.1	ALT_REF_LOCI_1
+REGION231	19	38590365	38995717	fix-patch	KQ458386.1	NW_014040929.1	PATCHES
+IFNL4	19	39219618	39357436	fix-patch	MU273385.1	NW_025791808.1	PATCHES
+FCGBP	19	39740125	40095774	fix-patch	KN196484.1	NW_009646206.1	PATCHES
+CEACAM_REGION_1	19	41456581	41682000	alt-scaffold	KI270867.1	NT_187620.1	ALT_REF_LOCI_1
+LRC_KIR	19	54025634	55084318	alt-scaffold	GL949746.1	NW_003571054.1	ALT_REF_LOCI_1
+LRC_KIR	19	54025634	55084318	alt-scaffold	KI270882.1	NT_187636.1	ALT_REF_LOCI_10
+LRC_KIR	19	54025634	55084318	alt-scaffold	KI270883.1	NT_187637.1	ALT_REF_LOCI_11
+LRC_KIR	19	54025634	55084318	alt-scaffold	KI270884.1	NT_187638.1	ALT_REF_LOCI_12
+LRC_KIR	19	54025634	55084318	alt-scaffold	KI270885.1	NT_187639.1	ALT_REF_LOCI_13
+LRC_KIR	19	54025634	55084318	alt-scaffold	KI270886.1	NT_187640.1	ALT_REF_LOCI_14
+LRC_KIR	19	54025634	55084318	alt-scaffold	KI270887.1	NT_187641.1	ALT_REF_LOCI_15
+LRC_KIR	19	54025634	55084318	alt-scaffold	KI270888.1	NT_187642.1	ALT_REF_LOCI_16
+LRC_KIR	19	54025634	55084318	alt-scaffold	KI270889.1	NT_187643.1	ALT_REF_LOCI_17
+LRC_KIR	19	54025634	55084318	alt-scaffold	KI270890.1	NT_187644.1	ALT_REF_LOCI_18
+LRC_KIR	19	54025634	55084318	alt-scaffold	KI270891.1	NT_187645.1	ALT_REF_LOCI_19
+LRC_KIR	19	54025634	55084318	alt-scaffold	GL949747.2	NW_003571055.2	ALT_REF_LOCI_2
+LRC_KIR	19	54025634	55084318	alt-scaffold	KI270914.1	NT_187668.1	ALT_REF_LOCI_20
+LRC_KIR	19	54025634	55084318	alt-scaffold	KI270915.1	NT_187669.1	ALT_REF_LOCI_21
+LRC_KIR	19	54025634	55084318	alt-scaffold	KI270916.1	NT_187670.1	ALT_REF_LOCI_22
+LRC_KIR	19	54025634	55084318	alt-scaffold	KI270917.1	NT_187671.1	ALT_REF_LOCI_23
+LRC_KIR	19	54025634	55084318	alt-scaffold	KI270918.1	NT_187672.1	ALT_REF_LOCI_24
+LRC_KIR	19	54025634	55084318	alt-scaffold	KI270919.1	NT_187673.1	ALT_REF_LOCI_25
+LRC_KIR	19	54025634	55084318	alt-scaffold	KI270920.1	NT_187674.1	ALT_REF_LOCI_26
+LRC_KIR	19	54025634	55084318	alt-scaffold	KI270921.1	NT_187675.1	ALT_REF_LOCI_27
+LRC_KIR	19	54025634	55084318	alt-scaffold	KI270922.1	NT_187676.1	ALT_REF_LOCI_28
+LRC_KIR	19	54025634	55084318	alt-scaffold	KI270923.1	NT_187677.1	ALT_REF_LOCI_29
+LRC_KIR	19	54025634	55084318	alt-scaffold	GL949748.2	NW_003571056.2	ALT_REF_LOCI_3
+LRC_KIR	19	54025634	55084318	alt-scaffold	KI270929.1	NT_187683.1	ALT_REF_LOCI_30
+LRC_KIR	19	54025634	55084318	alt-scaffold	KI270930.1	NT_187684.1	ALT_REF_LOCI_31
+LRC_KIR	19	54025634	55084318	alt-scaffold	KI270931.1	NT_187685.1	ALT_REF_LOCI_32
+LRC_KIR	19	54025634	55084318	alt-scaffold	KI270932.1	NT_187686.1	ALT_REF_LOCI_33
+LRC_KIR	19	54025634	55084318	alt-scaffold	KI270933.1	NT_187687.1	ALT_REF_LOCI_34
+LRC_KIR	19	54025634	55084318	alt-scaffold	GL000209.2	NT_113949.2	ALT_REF_LOCI_35
+LRC_KIR	19	54025634	55084318	alt-scaffold	GL949749.2	NW_003571057.2	ALT_REF_LOCI_4
+LRC_KIR	19	54025634	55084318	alt-scaffold	GL949750.2	NW_003571058.2	ALT_REF_LOCI_5
+LRC_KIR	19	54025634	55084318	alt-scaffold	GL949751.2	NW_003571059.2	ALT_REF_LOCI_6
+LRC_KIR	19	54025634	55084318	alt-scaffold	GL949752.1	NW_003571060.1	ALT_REF_LOCI_7
+LRC_KIR	19	54025634	55084318	alt-scaffold	GL949753.2	NW_003571061.2	ALT_REF_LOCI_8
+LRC_KIR	19	54025634	55084318	alt-scaffold	KI270938.1	NT_187693.1	ALT_REF_LOCI_9
+LRC_KIR	19	54025634	55084318	novel-patch	KV575254.1	NW_016107308.1	PATCHES
+LRC_KIR	19	54025634	55084318	novel-patch	KV575246.1	NW_016107300.1	PATCHES
+LRC_KIR	19	54025634	55084318	novel-patch	KV575256.1	NW_016107310.1	PATCHES
+LRC_KIR	19	54025634	55084318	novel-patch	KV575253.1	NW_016107307.1	PATCHES
+LRC_KIR	19	54025634	55084318	novel-patch	KV575252.1	NW_016107306.1	PATCHES
+LRC_KIR	19	54025634	55084318	novel-patch	KV575255.1	NW_016107309.1	PATCHES
+LRC_KIR	19	54025634	55084318	novel-patch	KV575259.1	NW_016107313.1	PATCHES
+LRC_KIR	19	54025634	55084318	novel-patch	KV575247.1	NW_016107301.1	PATCHES
+LRC_KIR	19	54025634	55084318	novel-patch	KV575248.1	NW_016107302.1	PATCHES
+LRC_KIR	19	54025634	55084318	novel-patch	KV575250.1	NW_016107304.1	PATCHES
+LRC_KIR	19	54025634	55084318	novel-patch	KV575249.1	NW_016107303.1	PATCHES
+LRC_KIR	19	54025634	55084318	novel-patch	KV575257.1	NW_016107311.1	PATCHES
+LRC_KIR	19	54025634	55084318	novel-patch	KV575258.1	NW_016107312.1	PATCHES
+LRC_KIR	19	54025634	55084318	novel-patch	KV575251.1	NW_016107305.1	PATCHES
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+REGION40	20	17771102	17893471	alt-scaffold	GL383577.2	NW_003315966.2	ALT_REF_LOCI_1
+CEN20	20	26436233	30038348	CEN	na	na	na
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+REGION179	20	61886306	62008187	alt-scaffold	KI270869.1	NT_187623.1	ALT_REF_LOCI_1
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+AFCT01	21	5010001	5166246	na	na	na	na
+AFCT02	21	5966594	6161371	na	na	na	na
+AFCT03	21	6427259	6580181	na	na	na	na
+AFCT04	21	6789086	6934219	na	na	na	na
+AFCT05	21	7743701	7865746	na	na	na	na
+NOR_CHR_21	21	8310972	8472360	fix-patch	ML143377.1	NW_021160023.1	PATCHES
+CEN21	21	10864561	12915808	CEN	na	na	na
+REGION41	21	14424141	14475471	alt-scaffold	GL383578.2	NW_003315967.2	ALT_REF_LOCI_1
+REGION182	21	17146893	17310433	alt-scaffold	KI270874.1	NT_187628.1	ALT_REF_LOCI_1
+REGION183	21	17603695	17744061	alt-scaffold	KI270873.1	NT_187627.1	ALT_REF_LOCI_1
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+REGION43	21	32769079	32837937	alt-scaffold	GL383580.2	NW_003315969.2	ALT_REF_LOCI_1
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+COL18A1	21	45382766	45572481	fix-patch	MU273392.1	NW_025791815.1	PATCHES
+SPATC1L	21	46140942	46221322	alt-scaffold	KI270872.1	NT_187626.1	ALT_REF_LOCI_1
+NOR_CHR_22	22	10097632	10510000	fix-patch	ML143380.1	NW_021160026.1	PATCHES
+CEN22	22	12954789	15054318	CEN	na	na	na
+REGION292	22	16124788	16489297	fix-patch	ML143378.1	NW_021160024.1	PATCHES
+IGL	22	22373449	22624257	alt-scaffold	KI270875.1	NT_187629.1	ALT_REF_LOCI_1
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+CYP2D6	22	42077656	42253758	novel-patch	KN196485.1	NW_009646207.1	PATCHES
+CYP2D6	22	42077656	42253758	novel-patch	KN196486.1	NW_009646208.1	PATCHES
+CYP2D6	22	42077656	42253758	novel-patch	KQ458387.1	NW_014040930.1	PATCHES
+CYP2D6	22	42077656	42253758	novel-patch	KQ458388.1	NW_014040931.1	PATCHES
+CYP2D6	22	42077656	42253758	novel-patch	KQ759761.1	NW_015148968.1	PATCHES
+REGION293	22	49970785	49983074	fix-patch	ML143379.1	NW_021160025.1	PATCHES
+SHANK3	22	50663907	50764925	fix-patch	KQ759762.2	NW_015148969.2	PATCHES
+PAR#1	X	10001	2781479	PAR	na	na	na
+REGION187	X	319338	601516	alt-scaffold	KI270880.1	NT_187634.1	ALT_REF_LOCI_1
+REGION187	X	319338	601516	alt-scaffold	KI270913.1	NT_187667.1	ALT_REF_LOCI_2
+REGION239	X	4950957	5129468	novel-patch	KV766199.1	NW_017363820.1	PATCHES
+REGION294	X	37081326	37291004	fix-patch	ML143385.1	NW_021160031.1	PATCHES
+AFCT09	X	37085009	37099262	na	na	na	na
+CCDC120	X	48841166	49171542	novel-patch	MU273397.1	NW_025791820.1	PATCHES
+REGION295	X	50213756	50288885	fix-patch	ML143382.1	NW_021160028.1	PATCHES
+CENX	X	58605580	62412542	CEN	na	na	na
+REGION188	X	79965154	80097082	alt-scaffold	KI270881.1	NT_187635.1	ALT_REF_LOCI_1
+TCEAL6	X	102104912	102173721	fix-patch	MU273393.1	NW_025791816.1	PATCHES
+REGION296	X	114255137	114367567	fix-patch	ML143383.1	NW_021160029.1	PATCHES
+NKRF	X	119549000	119689565	fix-patch	MU273394.1	NW_025791817.1	PATCHES
+CT47_REGION	X	120599933	121083725	fix-patch	ML143381.1	NW_021160027.1	PATCHES
+UBE2NL	X	143714925	144009032	novel-patch	MU273396.1	NW_025791819.1	PATCHES
+REGION297	X	144422134	144483176	fix-patch	ML143384.1	NW_021160030.1	PATCHES
+REGION336	X	152384883	153004526	novel-patch	MU273395.1	NW_025791818.1	PATCHES
+PAR#2	X	155701383	156030895	PAR	na	na	na
+PAR#1	Y	10001	2781479	PAR	na	na	na
+REGION259	Y	9034110	9132718	fix-patch	KZ208923.1	NW_018654725.1	PATCHES
+TSPY	Y	9132719	9641089	fix-patch	MU273398.1	NW_025791821.1	PATCHES
+CENY	Y	10316945	10544039	CEN	na	na	na
+REGION260	Y	21578942	21828659	fix-patch	KZ208924.1	NW_018654726.1	PATCHES
+REGION198	Y	56821510	56887902	fix-patch	KN196487.1	NW_009646209.1	PATCHES
+PAR#2	Y	56887903	57217415	PAR	na	na	na
+REGION3A	HSCHR19_2_CTG3_1	1	43156	fix-patch	MU273386.1	NW_025791809.1	PATCHES
+REGION2A	HSCHR5_1_CTG1_1	1	1144418	fix-patch	MU273354.1	NW_025791777.1	PATCHES
+REGION1A	HSCHR15_4_CTG8	1	5161414	fix-patch	KN538374.1	NW_011332701.1	PATCHES