junidude14 commited on
Commit
0f4f47c
·
verified ·
1 Parent(s): b546c9c

Archive 4 checkpoints (1-4)

Browse files
paper-releases/pbisc-diffusion/updates/20261013T144247Z-f01-trunk4x-campaign-launch/diffusion/dataset/server_1/model8/plans/f01_trunk4x_complete_20261013/baseline_records/ji2025_chili/fold0/real_lora/RUN.json ADDED
@@ -0,0 +1,102 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "schema": "pbisc_sdd.ft_intradataset.run.v1",
3
+ "source_checkpoint": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/runs/f01_6k_1x_seed20260627/checkpoint_epoch_016.pt",
4
+ "source_checkpoint_sha256": "8c7cd0e83e2bc19fe03dfcbc084919a1e2f61be8cc8bc12f4caf543dfda91633",
5
+ "dataset_dir": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/ji2025_chili",
6
+ "condition_npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/ji2025_chili/conditions_raw_fixed.npz",
7
+ "condition_npz_sha256": "73a8fe0617391a14b876b80178cdd8ae704cfb3542be2496903eb6f3f9e48b57",
8
+ "fold": 0,
9
+ "mode": "lora",
10
+ "trainable": {
11
+ "mode": "lora",
12
+ "lora_layers": [
13
+ "time_encoder.0",
14
+ "time_encoder.2",
15
+ "condition_encoder.0",
16
+ "condition_encoder.3",
17
+ "context_mixer.2",
18
+ "down_blocks.0.input_projection",
19
+ "down_blocks.0.context_projection.1",
20
+ "down_blocks.1.input_projection",
21
+ "down_blocks.1.context_projection.1",
22
+ "down_blocks.2.input_projection",
23
+ "down_blocks.2.context_projection.1",
24
+ "down_blocks.3.input_projection",
25
+ "down_blocks.3.context_projection.1",
26
+ "up_blocks.0.input_projection",
27
+ "up_blocks.0.context_projection.1",
28
+ "up_blocks.1.input_projection",
29
+ "up_blocks.1.context_projection.1",
30
+ "up_blocks.2.input_projection",
31
+ "up_blocks.2.context_projection.1",
32
+ "output_trunk.0",
33
+ "value_head",
34
+ "active_head"
35
+ ],
36
+ "lora_rank": 16,
37
+ "lora_alpha": 16.0,
38
+ "n_trainable": 1296224,
39
+ "n_total_base": 54185184,
40
+ "trainable_tensors": 44
41
+ },
42
+ "lr": 0.0005,
43
+ "warmup": 200,
44
+ "batch_size": 256,
45
+ "ema_decay": 0.999,
46
+ "max_steps": 20000,
47
+ "steps_run": 7500,
48
+ "eval_every": 250,
49
+ "patience": 8,
50
+ "train_subset": null,
51
+ "train_donors_file": null,
52
+ "fixed_steps": null,
53
+ "selected_step": 5500,
54
+ "selected_inner_val_loss": 0.12423031528790791,
55
+ "pretrained_inner_val_loss": 0.14039964725573859,
56
+ "train_rows": [
57
+ "N064_TOL",
58
+ "N064_FU1",
59
+ "N032_AC",
60
+ "N038_BC",
61
+ "N038_AC",
62
+ "N055_AC",
63
+ "N138_TOL",
64
+ "N138_FU1",
65
+ "N129_BC",
66
+ "N129_AC",
67
+ "N147_TOL",
68
+ "N159_BC",
69
+ "N001_TOL",
70
+ "N001_FU1",
71
+ "N002_TOL",
72
+ "N002_FU1",
73
+ "N005_BC",
74
+ "N005_AC",
75
+ "N018_BC",
76
+ "N018_AC",
77
+ "N022_TOL",
78
+ "N022_FU1",
79
+ "N035_TOL"
80
+ ],
81
+ "inner_val_rows": [
82
+ "N150_BC",
83
+ "N043_TOL",
84
+ "N043_FU1"
85
+ ],
86
+ "test_rows_never_loaded_for_training": [
87
+ "N136_TOL",
88
+ "N136_FU1",
89
+ "N128_BC",
90
+ "N128_AC",
91
+ "N158_AC",
92
+ "N012_TOL",
93
+ "N012_FU1"
94
+ ],
95
+ "max_abs_weight_change": 0.8740653991699219,
96
+ "n_tensors_changed": 22,
97
+ "seed": 20260927,
98
+ "wall_seconds": 262.3,
99
+ "written_utc": "2026-09-28T05:57:30.841854+00:00",
100
+ "checkpoint_sha256": "5deef05b4061a1eddb999875f0c6fdb6a4aea03af3636f5968c1ef707deaa3da",
101
+ "reload_forward_max_abs_diff": 0.0
102
+ }
paper-releases/pbisc-diffusion/updates/20261013T144247Z-f01-trunk4x-campaign-launch/diffusion/dataset/server_1/model8/plans/f01_trunk4x_complete_20261013/baseline_records/ji2025_chili/fold1/real_lora/RUN.json ADDED
@@ -0,0 +1,102 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "schema": "pbisc_sdd.ft_intradataset.run.v1",
3
+ "source_checkpoint": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/runs/f01_6k_1x_seed20260627/checkpoint_epoch_016.pt",
4
+ "source_checkpoint_sha256": "8c7cd0e83e2bc19fe03dfcbc084919a1e2f61be8cc8bc12f4caf543dfda91633",
5
+ "dataset_dir": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/ji2025_chili",
6
+ "condition_npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/ji2025_chili/conditions_raw_fixed.npz",
7
+ "condition_npz_sha256": "73a8fe0617391a14b876b80178cdd8ae704cfb3542be2496903eb6f3f9e48b57",
8
+ "fold": 1,
9
+ "mode": "lora",
10
+ "trainable": {
11
+ "mode": "lora",
12
+ "lora_layers": [
13
+ "time_encoder.0",
14
+ "time_encoder.2",
15
+ "condition_encoder.0",
16
+ "condition_encoder.3",
17
+ "context_mixer.2",
18
+ "down_blocks.0.input_projection",
19
+ "down_blocks.0.context_projection.1",
20
+ "down_blocks.1.input_projection",
21
+ "down_blocks.1.context_projection.1",
22
+ "down_blocks.2.input_projection",
23
+ "down_blocks.2.context_projection.1",
24
+ "down_blocks.3.input_projection",
25
+ "down_blocks.3.context_projection.1",
26
+ "up_blocks.0.input_projection",
27
+ "up_blocks.0.context_projection.1",
28
+ "up_blocks.1.input_projection",
29
+ "up_blocks.1.context_projection.1",
30
+ "up_blocks.2.input_projection",
31
+ "up_blocks.2.context_projection.1",
32
+ "output_trunk.0",
33
+ "value_head",
34
+ "active_head"
35
+ ],
36
+ "lora_rank": 16,
37
+ "lora_alpha": 16.0,
38
+ "n_trainable": 1296224,
39
+ "n_total_base": 54185184,
40
+ "trainable_tensors": 44
41
+ },
42
+ "lr": 0.0005,
43
+ "warmup": 200,
44
+ "batch_size": 256,
45
+ "ema_decay": 0.999,
46
+ "max_steps": 20000,
47
+ "steps_run": 5750,
48
+ "eval_every": 250,
49
+ "patience": 8,
50
+ "train_subset": null,
51
+ "train_donors_file": null,
52
+ "fixed_steps": null,
53
+ "selected_step": 3750,
54
+ "selected_inner_val_loss": 0.10349650867283344,
55
+ "pretrained_inner_val_loss": 0.11723287310451269,
56
+ "train_rows": [
57
+ "N064_TOL",
58
+ "N064_FU1",
59
+ "N038_BC",
60
+ "N038_AC",
61
+ "N055_AC",
62
+ "N136_TOL",
63
+ "N136_FU1",
64
+ "N138_TOL",
65
+ "N138_FU1",
66
+ "N128_BC",
67
+ "N128_AC",
68
+ "N129_BC",
69
+ "N129_AC",
70
+ "N147_TOL",
71
+ "N150_BC",
72
+ "N158_AC",
73
+ "N159_BC",
74
+ "N002_TOL",
75
+ "N002_FU1",
76
+ "N012_TOL",
77
+ "N012_FU1",
78
+ "N022_TOL",
79
+ "N022_FU1"
80
+ ],
81
+ "inner_val_rows": [
82
+ "N001_TOL",
83
+ "N001_FU1",
84
+ "N018_BC",
85
+ "N018_AC"
86
+ ],
87
+ "test_rows_never_loaded_for_training": [
88
+ "N032_AC",
89
+ "N005_BC",
90
+ "N005_AC",
91
+ "N035_TOL",
92
+ "N043_TOL",
93
+ "N043_FU1"
94
+ ],
95
+ "max_abs_weight_change": 0.5407115817070007,
96
+ "n_tensors_changed": 22,
97
+ "seed": 20260927,
98
+ "wall_seconds": 222.5,
99
+ "written_utc": "2026-09-28T06:17:48.449128+00:00",
100
+ "checkpoint_sha256": "84ba266c8791a45d2a8face2662ef630afcf3a3da547d8c10e5ed853f00a43ee",
101
+ "reload_forward_max_abs_diff": 0.0
102
+ }
paper-releases/pbisc-diffusion/updates/20261013T144247Z-f01-trunk4x-campaign-launch/diffusion/dataset/server_1/model8/plans/f01_trunk4x_complete_20261013/baseline_records/ji2025_chili/fold2/real_lora/RUN.json ADDED
@@ -0,0 +1,102 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "schema": "pbisc_sdd.ft_intradataset.run.v1",
3
+ "source_checkpoint": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/runs/f01_6k_1x_seed20260627/checkpoint_epoch_016.pt",
4
+ "source_checkpoint_sha256": "8c7cd0e83e2bc19fe03dfcbc084919a1e2f61be8cc8bc12f4caf543dfda91633",
5
+ "dataset_dir": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/ji2025_chili",
6
+ "condition_npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/ji2025_chili/conditions_raw_fixed.npz",
7
+ "condition_npz_sha256": "73a8fe0617391a14b876b80178cdd8ae704cfb3542be2496903eb6f3f9e48b57",
8
+ "fold": 2,
9
+ "mode": "lora",
10
+ "trainable": {
11
+ "mode": "lora",
12
+ "lora_layers": [
13
+ "time_encoder.0",
14
+ "time_encoder.2",
15
+ "condition_encoder.0",
16
+ "condition_encoder.3",
17
+ "context_mixer.2",
18
+ "down_blocks.0.input_projection",
19
+ "down_blocks.0.context_projection.1",
20
+ "down_blocks.1.input_projection",
21
+ "down_blocks.1.context_projection.1",
22
+ "down_blocks.2.input_projection",
23
+ "down_blocks.2.context_projection.1",
24
+ "down_blocks.3.input_projection",
25
+ "down_blocks.3.context_projection.1",
26
+ "up_blocks.0.input_projection",
27
+ "up_blocks.0.context_projection.1",
28
+ "up_blocks.1.input_projection",
29
+ "up_blocks.1.context_projection.1",
30
+ "up_blocks.2.input_projection",
31
+ "up_blocks.2.context_projection.1",
32
+ "output_trunk.0",
33
+ "value_head",
34
+ "active_head"
35
+ ],
36
+ "lora_rank": 16,
37
+ "lora_alpha": 16.0,
38
+ "n_trainable": 1296224,
39
+ "n_total_base": 54185184,
40
+ "trainable_tensors": 44
41
+ },
42
+ "lr": 0.0005,
43
+ "warmup": 200,
44
+ "batch_size": 256,
45
+ "ema_decay": 0.999,
46
+ "max_steps": 20000,
47
+ "steps_run": 6250,
48
+ "eval_every": 250,
49
+ "patience": 8,
50
+ "train_subset": null,
51
+ "train_donors_file": null,
52
+ "fixed_steps": null,
53
+ "selected_step": 4250,
54
+ "selected_inner_val_loss": 0.09297323102752368,
55
+ "pretrained_inner_val_loss": 0.10534377520283063,
56
+ "train_rows": [
57
+ "N064_TOL",
58
+ "N064_FU1",
59
+ "N032_AC",
60
+ "N038_BC",
61
+ "N038_AC",
62
+ "N136_TOL",
63
+ "N136_FU1",
64
+ "N138_TOL",
65
+ "N138_FU1",
66
+ "N128_BC",
67
+ "N128_AC",
68
+ "N158_AC",
69
+ "N159_BC",
70
+ "N005_BC",
71
+ "N005_AC",
72
+ "N012_TOL",
73
+ "N012_FU1",
74
+ "N018_BC",
75
+ "N018_AC",
76
+ "N022_TOL",
77
+ "N022_FU1",
78
+ "N035_TOL",
79
+ "N043_TOL",
80
+ "N043_FU1"
81
+ ],
82
+ "inner_val_rows": [
83
+ "N129_BC",
84
+ "N129_AC",
85
+ "N147_TOL"
86
+ ],
87
+ "test_rows_never_loaded_for_training": [
88
+ "N055_AC",
89
+ "N150_BC",
90
+ "N001_TOL",
91
+ "N001_FU1",
92
+ "N002_TOL",
93
+ "N002_FU1"
94
+ ],
95
+ "max_abs_weight_change": 0.736748456954956,
96
+ "n_tensors_changed": 22,
97
+ "seed": 20260927,
98
+ "wall_seconds": 235.6,
99
+ "written_utc": "2026-09-28T06:41:31.807535+00:00",
100
+ "checkpoint_sha256": "9a4f94180c2b9405a77d9ccb435970f652c4e2a602e0a88f9a12e3d1bf9054f0",
101
+ "reload_forward_max_abs_diff": 0.0
102
+ }
paper-releases/pbisc-diffusion/updates/20261013T144247Z-f01-trunk4x-campaign-launch/diffusion/dataset/server_1/model8/plans/f01_trunk4x_complete_20261013/baseline_records/ji2025_chili/fold3/real_lora/RUN.json ADDED
@@ -0,0 +1,102 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "schema": "pbisc_sdd.ft_intradataset.run.v1",
3
+ "source_checkpoint": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/runs/f01_6k_1x_seed20260627/checkpoint_epoch_016.pt",
4
+ "source_checkpoint_sha256": "8c7cd0e83e2bc19fe03dfcbc084919a1e2f61be8cc8bc12f4caf543dfda91633",
5
+ "dataset_dir": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/ji2025_chili",
6
+ "condition_npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/ji2025_chili/conditions_raw_fixed.npz",
7
+ "condition_npz_sha256": "73a8fe0617391a14b876b80178cdd8ae704cfb3542be2496903eb6f3f9e48b57",
8
+ "fold": 3,
9
+ "mode": "lora",
10
+ "trainable": {
11
+ "mode": "lora",
12
+ "lora_layers": [
13
+ "time_encoder.0",
14
+ "time_encoder.2",
15
+ "condition_encoder.0",
16
+ "condition_encoder.3",
17
+ "context_mixer.2",
18
+ "down_blocks.0.input_projection",
19
+ "down_blocks.0.context_projection.1",
20
+ "down_blocks.1.input_projection",
21
+ "down_blocks.1.context_projection.1",
22
+ "down_blocks.2.input_projection",
23
+ "down_blocks.2.context_projection.1",
24
+ "down_blocks.3.input_projection",
25
+ "down_blocks.3.context_projection.1",
26
+ "up_blocks.0.input_projection",
27
+ "up_blocks.0.context_projection.1",
28
+ "up_blocks.1.input_projection",
29
+ "up_blocks.1.context_projection.1",
30
+ "up_blocks.2.input_projection",
31
+ "up_blocks.2.context_projection.1",
32
+ "output_trunk.0",
33
+ "value_head",
34
+ "active_head"
35
+ ],
36
+ "lora_rank": 16,
37
+ "lora_alpha": 16.0,
38
+ "n_trainable": 1296224,
39
+ "n_total_base": 54185184,
40
+ "trainable_tensors": 44
41
+ },
42
+ "lr": 0.0005,
43
+ "warmup": 200,
44
+ "batch_size": 256,
45
+ "ema_decay": 0.999,
46
+ "max_steps": 20000,
47
+ "steps_run": 6250,
48
+ "eval_every": 250,
49
+ "patience": 8,
50
+ "train_subset": null,
51
+ "train_donors_file": null,
52
+ "fixed_steps": null,
53
+ "selected_step": 4250,
54
+ "selected_inner_val_loss": 0.11028935636083285,
55
+ "pretrained_inner_val_loss": 0.12377827862898509,
56
+ "train_rows": [
57
+ "N032_AC",
58
+ "N055_AC",
59
+ "N136_TOL",
60
+ "N136_FU1",
61
+ "N138_TOL",
62
+ "N138_FU1",
63
+ "N128_BC",
64
+ "N128_AC",
65
+ "N129_BC",
66
+ "N129_AC",
67
+ "N147_TOL",
68
+ "N150_BC",
69
+ "N158_AC",
70
+ "N001_TOL",
71
+ "N001_FU1",
72
+ "N002_TOL",
73
+ "N002_FU1",
74
+ "N005_BC",
75
+ "N005_AC",
76
+ "N035_TOL",
77
+ "N043_TOL",
78
+ "N043_FU1"
79
+ ],
80
+ "inner_val_rows": [
81
+ "N159_BC",
82
+ "N012_TOL",
83
+ "N012_FU1"
84
+ ],
85
+ "test_rows_never_loaded_for_training": [
86
+ "N064_TOL",
87
+ "N064_FU1",
88
+ "N038_BC",
89
+ "N038_AC",
90
+ "N018_BC",
91
+ "N018_AC",
92
+ "N022_TOL",
93
+ "N022_FU1"
94
+ ],
95
+ "max_abs_weight_change": 0.6752272844314575,
96
+ "n_tensors_changed": 22,
97
+ "seed": 20260927,
98
+ "wall_seconds": 247.4,
99
+ "written_utc": "2026-09-28T07:05:18.343378+00:00",
100
+ "checkpoint_sha256": "d8711a9b972d799e037a3f16d964a605065f059324b7e8a51a3af6bef18401d6",
101
+ "reload_forward_max_abs_diff": 0.0
102
+ }