Archive 4 checkpoints (1-4)
Browse files- paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/imperial_eskd/fewshot_n5/draw3/limma/versions.txt +3 -0
- paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/imperial_eskd/fewshot_n5/draw3/manifest.json +628 -0
- paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/imperial_eskd/fewshot_n5/draw3/rbo.csv +51 -0
- paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/imperial_eskd/fewshot_n5/draw3/repro.json +53 -0
paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/imperial_eskd/fewshot_n5/draw3/limma/versions.txt
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R version 4.5.2 (2025-10-31)
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limma 3.66.0
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edgeR 4.8.1
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paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/imperial_eskd/fewshot_n5/draw3/manifest.json
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| 1 |
+
{
|
| 2 |
+
"schema": "paired_ft_contrast_extra.v1",
|
| 3 |
+
"dataset": "imperial_eskd",
|
| 4 |
+
"design": "fewshot",
|
| 5 |
+
"unit": "fewshot_n5/draw3",
|
| 6 |
+
"written_utc": "2026-10-02T06:43:00.413137+00:00",
|
| 7 |
+
"command": [
|
| 8 |
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"tools/contrast_extra.py",
|
| 9 |
+
"--design",
|
| 10 |
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"fewshot",
|
| 11 |
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"--dataset",
|
| 12 |
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"imperial_eskd",
|
| 13 |
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"--draws",
|
| 14 |
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"0,1,2,3,4",
|
| 15 |
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"--threads",
|
| 16 |
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"4"
|
| 17 |
+
],
|
| 18 |
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"threads": 4,
|
| 19 |
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"donors": [
|
| 20 |
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"C20_1004",
|
| 21 |
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"C20_1404",
|
| 22 |
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"C21_1004",
|
| 23 |
+
"C21_1704",
|
| 24 |
+
"C21_2504",
|
| 25 |
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"C23_2204",
|
| 26 |
+
"C33_1401",
|
| 27 |
+
"C33_1601",
|
| 28 |
+
"C33_1901",
|
| 29 |
+
"C34_1404",
|
| 30 |
+
"C34_2104",
|
| 31 |
+
"C34_2504",
|
| 32 |
+
"C36_1504",
|
| 33 |
+
"C36_1704",
|
| 34 |
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"C36_2104",
|
| 35 |
+
"C42_1504",
|
| 36 |
+
"C42_2204",
|
| 37 |
+
"C42_2704",
|
| 38 |
+
"C58_1604",
|
| 39 |
+
"C58_2501",
|
| 40 |
+
"C58_2901",
|
| 41 |
+
"C58_0102",
|
| 42 |
+
"C58_0402",
|
| 43 |
+
"C58_1003",
|
| 44 |
+
"C60_2504",
|
| 45 |
+
"C63_1704",
|
| 46 |
+
"C63_2404",
|
| 47 |
+
"C63_2904",
|
| 48 |
+
"C65_1704",
|
| 49 |
+
"C65_2104",
|
| 50 |
+
"C65_2504",
|
| 51 |
+
"C69_1804",
|
| 52 |
+
"C82_2504",
|
| 53 |
+
"C85_2004",
|
| 54 |
+
"C93_2104",
|
| 55 |
+
"C93_2704",
|
| 56 |
+
"C93_0405",
|
| 57 |
+
"C101_0601",
|
| 58 |
+
"C101_1101",
|
| 59 |
+
"C101_1301",
|
| 60 |
+
"C101_1801",
|
| 61 |
+
"C101_2001",
|
| 62 |
+
"C101_2502",
|
| 63 |
+
"C103_2204",
|
| 64 |
+
"C104_2204",
|
| 65 |
+
"C106_2204",
|
| 66 |
+
"C113_0605",
|
| 67 |
+
"C123_2404",
|
| 68 |
+
"C123_2904",
|
| 69 |
+
"C123_0505",
|
| 70 |
+
"C124_2404",
|
| 71 |
+
"C124_2704",
|
| 72 |
+
"C124_0105",
|
| 73 |
+
"C126_2504",
|
| 74 |
+
"C126_3004",
|
| 75 |
+
"C126_0605",
|
| 76 |
+
"C127_2504",
|
| 77 |
+
"C127_0405",
|
| 78 |
+
"C127_1105",
|
| 79 |
+
"C128_2504",
|
| 80 |
+
"C128_0405",
|
| 81 |
+
"C128_1105",
|
| 82 |
+
"C132_2804",
|
| 83 |
+
"C132_0205",
|
| 84 |
+
"C132_1105",
|
| 85 |
+
"C137_3004",
|
| 86 |
+
"C137_2502",
|
| 87 |
+
"C138_3004",
|
| 88 |
+
"C138_2301",
|
| 89 |
+
"C138_3001",
|
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paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/imperial_eskd/fewshot_n5/draw3/rbo.csv
ADDED
|
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| 1 |
+
dataset,design,unit,arm,predictor,celltype,p,rbo_ext_t_desc,rbo_ext_t_asc,rbo_ext_mean_up_down,pred_defined,len_obs,len_pred
|
| 2 |
+
imperial_eskd,fewshot,fewshot_n5/draw3,zs_raw,generated:zs_raw,T cell,0.98,0.1504450652661722,0.13287546790664365,0.14166026658640793,True,5747,4901
|
| 3 |
+
imperial_eskd,fewshot,fewshot_n5/draw3,zs_raw,broadcast:all_usable_raw.npz@f0a2b659,T cell,0.98,0.17072003736546434,0.16919382930280577,0.16995693333413506,True,5747,5823
|
| 4 |
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imperial_eskd,fewshot,fewshot_n5/draw3,zs_raw,generated:zs_raw,B cell,0.98,0.3141610056527958,0.1706396155942744,0.24240031062353512,True,5636,4283
|
| 5 |
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imperial_eskd,fewshot,fewshot_n5/draw3,zs_raw,broadcast:all_usable_raw.npz@f0a2b659,B cell,0.98,0.1329227990259013,0.1835214571983944,0.15822212811214786,True,5636,5823
|
| 6 |
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imperial_eskd,fewshot,fewshot_n5/draw3,zs_raw,generated:zs_raw,Monocyte,0.98,0.15503347941058448,0.15384990544710644,0.15444169242884548,True,5628,4998
|
| 7 |
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imperial_eskd,fewshot,fewshot_n5/draw3,zs_raw,broadcast:all_usable_raw.npz@f0a2b659,Monocyte,0.98,0.16796328754130438,0.03674002701931217,0.10235165728030828,True,5628,5823
|
| 8 |
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imperial_eskd,fewshot,fewshot_n5/draw3,zs_raw,generated:zs_raw,NK cell,0.98,0.16654532858021542,0.11519169110399782,0.14086850984210664,True,5579,4455
|
| 9 |
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imperial_eskd,fewshot,fewshot_n5/draw3,zs_raw,broadcast:all_usable_raw.npz@f0a2b659,NK cell,0.98,0.17115573717419458,0.158404837093025,0.1647802871336098,True,5579,5823
|
| 10 |
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|
| 11 |
+
imperial_eskd,fewshot,fewshot_n5/draw3,zs_raw,broadcast:all_usable_raw.npz@f0a2b659,DC,0.98,0.14610779458201698,0.10457181664511006,0.1253398056135635,True,5426,5823
|
| 12 |
+
imperial_eskd,fewshot,fewshot_n5/draw3,zs_pseudo,generated:zs_pseudo,T cell,0.98,0.201996550442951,0.12829015182754552,0.16514335113524825,True,5747,4781
|
| 13 |
+
imperial_eskd,fewshot,fewshot_n5/draw3,zs_pseudo,broadcast:all_usable_pseudo.npz@df955ec1,T cell,0.98,0.524292772687738,0.2902578418252252,0.4072753072564816,True,5747,5846
|
| 14 |
+
imperial_eskd,fewshot,fewshot_n5/draw3,zs_pseudo,generated:zs_pseudo,B cell,0.98,0.22484845856519786,0.22240897173144597,0.22362871514832192,True,5636,4015
|
| 15 |
+
imperial_eskd,fewshot,fewshot_n5/draw3,zs_pseudo,broadcast:all_usable_pseudo.npz@df955ec1,B cell,0.98,0.37361318976940117,0.18744830730287837,0.2805307485361398,True,5636,5846
|
| 16 |
+
imperial_eskd,fewshot,fewshot_n5/draw3,zs_pseudo,generated:zs_pseudo,Monocyte,0.98,0.27355097202761974,0.1878294856336724,0.23069022883064608,True,5628,4318
|
| 17 |
+
imperial_eskd,fewshot,fewshot_n5/draw3,zs_pseudo,broadcast:all_usable_pseudo.npz@df955ec1,Monocyte,0.98,0.3451858865060787,0.17099060739554403,0.25808824695081134,True,5628,5846
|
| 18 |
+
imperial_eskd,fewshot,fewshot_n5/draw3,zs_pseudo,generated:zs_pseudo,NK cell,0.98,0.2389105781695457,0.2527142428721972,0.24581241052087144,True,5579,4149
|
| 19 |
+
imperial_eskd,fewshot,fewshot_n5/draw3,zs_pseudo,broadcast:all_usable_pseudo.npz@df955ec1,NK cell,0.98,0.4680866125394326,0.30135595224187745,0.38472128239065506,True,5579,5846
|
| 20 |
+
imperial_eskd,fewshot,fewshot_n5/draw3,zs_pseudo,generated:zs_pseudo,DC,0.98,0.10679254413039772,0.2316582508958283,0.16922539751311302,True,5426,3629
|
| 21 |
+
imperial_eskd,fewshot,fewshot_n5/draw3,zs_pseudo,broadcast:all_usable_pseudo.npz@df955ec1,DC,0.98,0.358012653897716,0.2612880171408632,0.3096503355192896,True,5426,5846
|
| 22 |
+
imperial_eskd,fewshot,fewshot_n5/draw3,zs_cal,generated:zs_cal,T cell,0.98,0.0940903080827838,0.07559064974521777,0.08484047891400079,True,5747,4820
|
| 23 |
+
imperial_eskd,fewshot,fewshot_n5/draw3,zs_cal,broadcast:test_cal.npz@40362513,T cell,0.98,0.24816667348996652,0.19234555391845085,0.22025611370420867,True,5747,5823
|
| 24 |
+
imperial_eskd,fewshot,fewshot_n5/draw3,zs_cal,generated:zs_cal,B cell,0.98,0.24479000163097245,0.18870743653091207,0.21674871908094226,True,5636,3952
|
| 25 |
+
imperial_eskd,fewshot,fewshot_n5/draw3,zs_cal,broadcast:test_cal.npz@40362513,B cell,0.98,0.1567608078780528,0.18271225453134368,0.16973653120469823,True,5636,5823
|
| 26 |
+
imperial_eskd,fewshot,fewshot_n5/draw3,zs_cal,generated:zs_cal,Monocyte,0.98,0.21809490808943166,0.12879182259789176,0.17344336534366173,True,5628,4364
|
| 27 |
+
imperial_eskd,fewshot,fewshot_n5/draw3,zs_cal,broadcast:test_cal.npz@40362513,Monocyte,0.98,0.20374312862093713,0.04709730549416038,0.12542021705754874,True,5628,5823
|
| 28 |
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imperial_eskd,fewshot,fewshot_n5/draw3,zs_cal,generated:zs_cal,NK cell,0.98,0.24253577053270678,0.17392848602047004,0.2082321282765884,True,5579,4101
|
| 29 |
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imperial_eskd,fewshot,fewshot_n5/draw3,zs_cal,broadcast:test_cal.npz@40362513,NK cell,0.98,0.1981505372506948,0.1811388686479495,0.18964470294932217,True,5579,5823
|
| 30 |
+
imperial_eskd,fewshot,fewshot_n5/draw3,zs_cal,generated:zs_cal,DC,0.98,0.17880954237978428,0.20605013144370457,0.19242983691174442,True,5426,3540
|
| 31 |
+
imperial_eskd,fewshot,fewshot_n5/draw3,zs_cal,broadcast:test_cal.npz@40362513,DC,0.98,0.17914271109787952,0.12379985288033203,0.15147128198910578,True,5426,5823
|
| 32 |
+
imperial_eskd,fewshot,fewshot_n5/draw3,lora5,generated:lora5,T cell,0.98,0.4091668442320385,0.17904685416255947,0.29410684919729896,True,5747,4615
|
| 33 |
+
imperial_eskd,fewshot,fewshot_n5/draw3,lora5,broadcast:test_raw.npz@1bb5ea46,T cell,0.98,0.17072003736546434,0.16919382930280577,0.16995693333413506,True,5747,5823
|
| 34 |
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imperial_eskd,fewshot,fewshot_n5/draw3,lora5,generated:lora5,B cell,0.98,0.22837186208567328,0.1818808601251396,0.20512636110540644,True,5636,3954
|
| 35 |
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imperial_eskd,fewshot,fewshot_n5/draw3,lora5,broadcast:test_raw.npz@1bb5ea46,B cell,0.98,0.1329227990259013,0.1835214571983944,0.15822212811214786,True,5636,5823
|
| 36 |
+
imperial_eskd,fewshot,fewshot_n5/draw3,lora5,generated:lora5,Monocyte,0.98,0.3103930254767535,0.18607534228597655,0.24823418388136503,True,5628,4094
|
| 37 |
+
imperial_eskd,fewshot,fewshot_n5/draw3,lora5,broadcast:test_raw.npz@1bb5ea46,Monocyte,0.98,0.16796328754130438,0.03674002701931217,0.10235165728030828,True,5628,5823
|
| 38 |
+
imperial_eskd,fewshot,fewshot_n5/draw3,lora5,generated:lora5,NK cell,0.98,0.4313951196797746,0.2803382555333914,0.355866687606583,True,5579,4161
|
| 39 |
+
imperial_eskd,fewshot,fewshot_n5/draw3,lora5,broadcast:test_raw.npz@1bb5ea46,NK cell,0.98,0.17115573717419458,0.158404837093025,0.1647802871336098,True,5579,5823
|
| 40 |
+
imperial_eskd,fewshot,fewshot_n5/draw3,lora5,generated:lora5,DC,0.98,0.24698128084182902,0.20652344898032804,0.22675236491107853,True,5426,3696
|
| 41 |
+
imperial_eskd,fewshot,fewshot_n5/draw3,lora5,broadcast:test_raw.npz@1bb5ea46,DC,0.98,0.14610779458201698,0.10457181664511006,0.1253398056135635,True,5426,5823
|
| 42 |
+
imperial_eskd,fewshot,fewshot_n5/draw3,scsemi5,generated:scsemi5,T cell,0.98,0.09577970634663413,0.16163043619104808,0.12870507126884112,True,5747,3514
|
| 43 |
+
imperial_eskd,fewshot,fewshot_n5/draw3,scsemi5,broadcast:test_raw.npz@1bb5ea46,T cell,0.98,0.17072003736546434,0.16919382930280577,0.16995693333413506,True,5747,5823
|
| 44 |
+
imperial_eskd,fewshot,fewshot_n5/draw3,scsemi5,generated:scsemi5,B cell,0.98,0.11231183762070028,0.1126108641694458,0.11246135089507303,True,5636,1609
|
| 45 |
+
imperial_eskd,fewshot,fewshot_n5/draw3,scsemi5,broadcast:test_raw.npz@1bb5ea46,B cell,0.98,0.1329227990259013,0.1835214571983944,0.15822212811214786,True,5636,5823
|
| 46 |
+
imperial_eskd,fewshot,fewshot_n5/draw3,scsemi5,generated:scsemi5,Monocyte,0.98,0.15713279756777074,0.07533215897008375,0.11623247826892724,True,5628,1569
|
| 47 |
+
imperial_eskd,fewshot,fewshot_n5/draw3,scsemi5,broadcast:test_raw.npz@1bb5ea46,Monocyte,0.98,0.16796328754130438,0.03674002701931217,0.10235165728030828,True,5628,5823
|
| 48 |
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imperial_eskd,fewshot,fewshot_n5/draw3,scsemi5,generated:scsemi5,NK cell,0.98,0.27024516612066823,0.3326988986671852,0.3014720323939267,True,5579,2770
|
| 49 |
+
imperial_eskd,fewshot,fewshot_n5/draw3,scsemi5,broadcast:test_raw.npz@1bb5ea46,NK cell,0.98,0.17115573717419458,0.158404837093025,0.1647802871336098,True,5579,5823
|
| 50 |
+
imperial_eskd,fewshot,fewshot_n5/draw3,scsemi5,generated:scsemi5,DC,0.98,0.20250093238417363,0.15732117258102402,0.1799110524825988,True,5426,1063
|
| 51 |
+
imperial_eskd,fewshot,fewshot_n5/draw3,scsemi5,broadcast:test_raw.npz@1bb5ea46,DC,0.98,0.14610779458201698,0.10457181664511006,0.1253398056135635,True,5426,5823
|
paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/imperial_eskd/fewshot_n5/draw3/repro.json
ADDED
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| 1 |
+
{
|
| 2 |
+
"arms": {
|
| 3 |
+
"zs_raw": {
|
| 4 |
+
"contrast_max_abs_diff": 5.551115123125783e-17,
|
| 5 |
+
"contrast_all_equal": true,
|
| 6 |
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"n_genes_equal": true,
|
| 7 |
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"welch_lists_equal": true,
|
| 8 |
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"welch_counts_equal": true,
|
| 9 |
+
"pass": true
|
| 10 |
+
},
|
| 11 |
+
"zs_pseudo": {
|
| 12 |
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"contrast_max_abs_diff": 5.551115123125783e-17,
|
| 13 |
+
"contrast_all_equal": true,
|
| 14 |
+
"n_genes_equal": true,
|
| 15 |
+
"welch_lists_equal": true,
|
| 16 |
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"welch_counts_equal": true,
|
| 17 |
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"pass": true
|
| 18 |
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},
|
| 19 |
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"zs_cal": {
|
| 20 |
+
"contrast_max_abs_diff": 8.326672684688674e-17,
|
| 21 |
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"contrast_all_equal": true,
|
| 22 |
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"n_genes_equal": true,
|
| 23 |
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"welch_lists_equal": true,
|
| 24 |
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"welch_counts_equal": true,
|
| 25 |
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"pass": true
|
| 26 |
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},
|
| 27 |
+
"lora5": {
|
| 28 |
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"contrast_max_abs_diff": 5.551115123125783e-17,
|
| 29 |
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"contrast_all_equal": true,
|
| 30 |
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"n_genes_equal": true,
|
| 31 |
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"welch_lists_equal": true,
|
| 32 |
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"welch_counts_equal": true,
|
| 33 |
+
"pass": true
|
| 34 |
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},
|
| 35 |
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"scsemi5": {
|
| 36 |
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"contrast_max_abs_diff": 5.551115123125783e-17,
|
| 37 |
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"contrast_all_equal": true,
|
| 38 |
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"n_genes_equal": true,
|
| 39 |
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"welch_lists_equal": true,
|
| 40 |
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"welch_counts_equal": true,
|
| 41 |
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"pass": true
|
| 42 |
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}
|
| 43 |
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},
|
| 44 |
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"observed_split_half_full_aggregates": {
|
| 45 |
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"n_equal": true,
|
| 46 |
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"det_equal": true,
|
| 47 |
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"sum_equal_float32": true,
|
| 48 |
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"cp10k_max_abs_diff_float32": 0.0,
|
| 49 |
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"cp10k_equal_float32": true
|
| 50 |
+
},
|
| 51 |
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"comparable_with_scorer": true,
|
| 52 |
+
"all_pass": true
|
| 53 |
+
}
|