junidude14 commited on
Commit
1aa4a65
·
verified ·
1 Parent(s): c69d7f7

Archive 4 checkpoints (1-4)

Browse files
paper-releases/pbisc-diffusion/updates/20261012T085105Z-introduction-citation-integration/diffusion/dataset/server_1/manuscript/editorial/main_introduction_citations_20261012_tex.log ADDED
@@ -0,0 +1,882 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ **
2
+ (main.tex
3
+ LaTeX2e <2021-11-15> patch level 1
4
+ L3 programming layer <2022-02-24> (sn-jnl.cls
5
+ Document Class: sn-jnl 2019/11/18 v0.1: An authoring template for Springer Jour
6
+ nal articles
7
+ (article.cls
8
+ Document Class: article 2021/10/04 v1.4n Standard LaTeX document class
9
+ (fleqn.clo
10
+ File: fleqn.clo 2016/12/29 v1.2b Standard LaTeX option (flush left equations)
11
+ \mathindent=\skip47
12
+ Applying: [2015/01/01] Make \[ robust on input line 50.
13
+ LaTeX Info: Redefining \[ on input line 51.
14
+ Already applied: [0000/00/00] Make \[ robust on input line 62.
15
+ Applying: [2015/01/01] Make \] robust on input line 74.
16
+ LaTeX Info: Redefining \] on input line 75.
17
+ Already applied: [0000/00/00] Make \] robust on input line 83.
18
+ ) (size10.clo
19
+ File: size10.clo 2021/10/04 v1.4n Standard LaTeX file (size option)
20
+ )
21
+ \c@part=\count181
22
+ \c@section=\count182
23
+ \c@subsection=\count183
24
+ \c@subsubsection=\count184
25
+ \c@paragraph=\count185
26
+ \c@subparagraph=\count186
27
+ \c@figure=\count187
28
+ \c@table=\count188
29
+ \abovecaptionskip=\skip48
30
+ \belowcaptionskip=\skip49
31
+ \bibindent=\dimen138
32
+ )
33
+ LaTeX Info: Redefining \rm on input line 146.
34
+ LaTeX Info: Redefining \sf on input line 147.
35
+ LaTeX Info: Redefining \tt on input line 148.
36
+ LaTeX Info: Redefining \bf on input line 149.
37
+ LaTeX Info: Redefining \it on input line 150.
38
+ LaTeX Info: Redefining \sl on input line 151.
39
+ LaTeX Info: Redefining \sc on input line 152.
40
+ LaTeX Info: Redefining \cal on input line 153.
41
+ LaTeX Info: Redefining \mit on input line 154.
42
+ LaTeX Info: Redefining \textsubscript on input line 212.
43
+ \columnhsize=\skip50
44
+ (geometry.sty
45
+ Package: geometry 2020/01/02 v5.9 Page Geometry
46
+ (keyval.sty
47
+ Package: keyval 2014/10/28 v1.15 key=value parser (DPC)
48
+ \KV@toks@=\toks16
49
+ ) (ifvtex.sty
50
+ Package: ifvtex 2019/10/25 v1.7 ifvtex legacy package. Use iftex instead.
51
+ (iftex.sty
52
+ Package: iftex 2022/02/03 v1.0f TeX engine tests
53
+ ))
54
+ \Gm@cnth=\count189
55
+ \Gm@cntv=\count190
56
+ \c@Gm@tempcnt=\count191
57
+ \Gm@bindingoffset=\dimen139
58
+ \Gm@wd@mp=\dimen140
59
+ \Gm@odd@mp=\dimen141
60
+ \Gm@even@mp=\dimen142
61
+ \Gm@layoutwidth=\dimen143
62
+ \Gm@layoutheight=\dimen144
63
+ \Gm@layouthoffset=\dimen145
64
+ \Gm@layoutvoffset=\dimen146
65
+ \Gm@dimlist=\toks17
66
+ )
67
+ \artcatbox=\box50
68
+ \aucount=\count192
69
+ \corraucount=\count193
70
+ \punctcount=\count194
71
+ \emailcnt=\count195
72
+ \c@affn=\count196
73
+ \addcount=\count197
74
+ \PacsCount=\count198
75
+ \PacsTmpCnt=\count199
76
+ \FMremarkdim=\dimen147
77
+ \fmremarkbox=\box51
78
+
79
+ (cuted.sty
80
+ Package: cuted 2021/10/04 v2.0 Mixing onecolumn and twocolumn modes
81
+ \At@ViperColsBreak=\toks18
82
+ \preCutedStrip=\toks19
83
+ \postCutedStrip=\toks20
84
+ \cuted@@tempbox@a=\box52
85
+ \cuted@@tempbox@c=\box53
86
+ \cuted@@tempbox@var=\box54
87
+ \hold@viper=\box55
88
+ \@viper=\box56
89
+ \cuted@@varbox@a=\box57
90
+ \cuted@@varbox@c=\box58
91
+ \cuted@@tempdim@spread=\dimen148
92
+ \cuted@@tempdim@a=\dimen149
93
+ \cuted@@tempdim@b=\dimen150
94
+ \ht@hold@viper=\dimen151
95
+ \ht@viper=\dimen152
96
+ \var@@pagediscards@ht=\dimen153
97
+ \stripsep=\skip51
98
+ \viper@penalty=\count266
99
+ )
100
+ \firstpagehtcheck=\dimen154
101
+ \labelwidthi=\dimen155
102
+ \labelwidthii=\dimen156
103
+ \labelwidthiii=\dimen157
104
+ \labelwidthiv=\dimen158
105
+ \figwidth=\dimen159
106
+ \figheight=\dimen160
107
+ \sidecapwidth=\dimen161
108
+ \wrapcapline=\dimen162
109
+ \totalwrapline=\dimen163
110
+ \wraptotline=\dimen164
111
+ \figurebox=\box59
112
+ \wrapfigcapbox=\box60
113
+ \figcapbox=\box61
114
+ \capbox=\box62
115
+ \headwidthskip=\skip52
116
+ \tabcapbox=\box63
117
+ \temptbox=\box64
118
+ \tempdime=\dimen165
119
+ \tabhtdime=\dimen166
120
+ (rotating.sty
121
+ Package: rotating 2016/08/11 v2.16d rotated objects in LaTeX
122
+ (graphicx.sty
123
+ Package: graphicx 2021/09/16 v1.2d Enhanced LaTeX Graphics (DPC,SPQR)
124
+ (graphics.sty
125
+ Package: graphics 2021/03/04 v1.4d Standard LaTeX Graphics (DPC,SPQR)
126
+ (trig.sty
127
+ Package: trig 2021/08/11 v1.11 sin cos tan (DPC)
128
+ ) (graphics.cfg
129
+ File: graphics.cfg 2016/06/04 v1.11 sample graphics configuration
130
+ )
131
+ Package graphics Info: Driver file: xetex.def on input line 107.
132
+ (xetex.def
133
+ File: xetex.def 2021/03/18 v5.0k Graphics/color driver for xetex
134
+ ))
135
+ \Gin@req@height=\dimen167
136
+ \Gin@req@width=\dimen168
137
+ ) (ifthen.sty
138
+ Package: ifthen 2020/11/24 v1.1c Standard LaTeX ifthen package (DPC)
139
+ )
140
+ \c@r@tfl@t=\count267
141
+ \rotFPtop=\skip53
142
+ \rotFPbot=\skip54
143
+ \rot@float@box=\box65
144
+ \rot@mess@toks=\toks21
145
+ ) (threeparttable.sty
146
+ Package: threeparttable 2003/06/13 v 3.0
147
+ \@tempboxb=\box66
148
+ ) (appendix.sty
149
+ Package: appendix 2020/02/08 v1.2c extra appendix facilities
150
+ \c@@pps=\count268
151
+ \c@@ppsavesec=\count269
152
+ \c@@ppsaveapp=\count270
153
+ ) (hyperref.sty
154
+ Package: hyperref 2022-02-21 v7.00n Hypertext links for LaTeX
155
+
156
+ (ltxcmds.sty
157
+ Package: ltxcmds 2020-05-10 v1.25 LaTeX kernel commands for general use (HO)
158
+ ) (pdftexcmds.sty
159
+ Package: pdftexcmds 2020-06-27 v0.33 Utility functions of pdfTeX for LuaTeX (HO
160
+ )
161
+ (infwarerr.sty
162
+ Package: infwarerr 2019/12/03 v1.5 Providing info/warning/error messages (HO)
163
+ )
164
+ Package pdftexcmds Info: \pdf@primitive is available.
165
+ Package pdftexcmds Info: \pdf@ifprimitive is available.
166
+ Package pdftexcmds Info: \pdfdraftmode not found.
167
+ ) (kvsetkeys.sty
168
+ Package: kvsetkeys 2019/12/15 v1.18 Key value parser (HO)
169
+ )
170
+ (kvdefinekeys.sty
171
+ Package: kvdefinekeys 2019-12-19 v1.6 Define keys (HO)
172
+ ) (pdfescape.sty
173
+ Package: pdfescape 2019/12/09 v1.15 Implements pdfTeX's escape features (HO)
174
+ ) (hycolor.sty
175
+ Package: hycolor 2020-01-27 v1.10 Color options for hyperref/bookmark (HO)
176
+ ) (letltxmacro.sty
177
+ Package: letltxmacro 2019/12/03 v1.6 Let assignment for LaTeX macros (HO)
178
+ ) (auxhook.sty
179
+ Package: auxhook 2019-12-17 v1.6 Hooks for auxiliary files (HO)
180
+ ) (kvoptions.sty
181
+ Package: kvoptions 2020-10-07 v3.14 Key value format for package options (HO)
182
+ )
183
+ \@linkdim=\dimen169
184
+ \Hy@linkcounter=\count271
185
+ \Hy@pagecounter=\count272
186
+ (pd1enc.def
187
+ File: pd1enc.def 2022-02-21 v7.00n Hyperref: PDFDocEncoding definition (HO)
188
+ ) (intcalc.sty
189
+ Package: intcalc 2019/12/15 v1.3 Expandable calculations with integers (HO)
190
+ ) (etexcmds.sty
191
+ Package: etexcmds 2019/12/15 v1.7 Avoid name clashes with e-TeX commands (HO)
192
+ )
193
+ \Hy@SavedSpaceFactor=\count273
194
+ (puenc.def
195
+ File: puenc.def 2022-02-21 v7.00n Hyperref: PDF Unicode definition (HO)
196
+ )
197
+ Package hyperref Info: Hyper figures OFF on input line 4137.
198
+ Package hyperref Info: Link nesting OFF on input line 4142.
199
+ Package hyperref Info: Hyper index ON on input line 4145.
200
+ Package hyperref Info: Plain pages OFF on input line 4152.
201
+ Package hyperref Info: Backreferencing OFF on input line 4157.
202
+ Package hyperref Info: Implicit mode ON; LaTeX internals redefined.
203
+ Package hyperref Info: Bookmarks ON on input line 4390.
204
+ \c@Hy@tempcnt=\count274
205
+
206
+ (url.sty
207
+ \Urlmuskip=\muskip16
208
+ Package: url 2013/09/16 ver 3.4 Verb mode for urls, etc.
209
+ )
210
+ LaTeX Info: Redefining \url on input line 4749.
211
+ \XeTeXLinkMargin=\dimen170
212
+ (bitset.sty
213
+ Package: bitset 2019/12/09 v1.3 Handle bit-vector datatype (HO)
214
+ (bigintcalc.sty
215
+ Package: bigintcalc 2019/12/15 v1.5 Expandable calculations on big integers (HO
216
+ )
217
+ ))
218
+ \Fld@menulength=\count275
219
+ \Field@Width=\dimen171
220
+ \Fld@charsize=\dimen172
221
+ Package hyperref Info: Hyper figures OFF on input line 6027.
222
+ Package hyperref Info: Link nesting OFF on input line 6032.
223
+ Package hyperref Info: Hyper index ON on input line 6035.
224
+ Package hyperref Info: backreferencing OFF on input line 6042.
225
+ Package hyperref Info: Link coloring OFF on input line 6047.
226
+ Package hyperref Info: Link coloring with OCG OFF on input line 6052.
227
+ Package hyperref Info: PDF/A mode OFF on input line 6057.
228
+ LaTeX Info: Redefining \ref on input line 6097.
229
+ LaTeX Info: Redefining \pageref on input line 6101.
230
+ (atbegshi-ltx.sty
231
+ Package: atbegshi-ltx 2021/01/10 v1.0c Emulation of the original atbegshi
232
+ package with kernel methods
233
+ )
234
+ \Hy@abspage=\count276
235
+ \c@Item=\count277
236
+ \c@Hfootnote=\count278
237
+ )
238
+ Package hyperref Info: Driver (autodetected): hxetex.
239
+ (hxetex.def
240
+ File: hxetex.def 2022-02-21 v7.00n Hyperref driver for XeTeX
241
+
242
+ (stringenc.sty
243
+ Package: stringenc 2019/11/29 v1.12 Convert strings between diff. encodings (HO
244
+ )
245
+ )
246
+ \pdfm@box=\box67
247
+ \c@Hy@AnnotLevel=\count279
248
+ \HyField@AnnotCount=\count280
249
+ \Fld@listcount=\count281
250
+ \c@bookmark@seq@number=\count282
251
+ (rerunfilecheck.sty
252
+ Package: rerunfilecheck 2019/12/05 v1.9 Rerun checks for auxiliary files (HO)
253
+ (atveryend-ltx.sty
254
+ Package: atveryend-ltx 2020/08/19 v1.0a Emulation of the original atveryend pac
255
+ kage
256
+ with kernel methods
257
+ ) (uniquecounter.sty
258
+ Package: uniquecounter 2019/12/15 v1.4 Provide unlimited unique counter (HO)
259
+ )
260
+ Package uniquecounter Info: New unique counter `rerunfilecheck' on input line 2
261
+ 86.
262
+ )
263
+ \Hy@SectionHShift=\skip55
264
+ )
265
+ Package hyperref Info: Option `colorlinks' set `true' on input line 1471.
266
+ Package hyperref Info: Option `breaklinks' set `true' on input line 1471.
267
+ Package hyperref Info: Option `plainpages' set `false' on input line 1471.
268
+ Package hyperref Info: Option `bookmarksopen' set `true' on input line 1471.
269
+ Package hyperref Info: Option `bookmarksnumbered' set `false' on input line 147
270
+ 1.
271
+
272
+ (wrapfig.sty
273
+ \wrapoverhang=\dimen173
274
+ \WF@size=\dimen174
275
+ \c@WF@wrappedlines=\count283
276
+ \WF@box=\box68
277
+ \WF@everypar=\toks22
278
+ Package: wrapfig 2003/01/31 v 3.6
279
+ )
280
+ \wraplines=\count284
281
+ \@authorfigbox=\box69
282
+ \@authorfigboxdim=\skip56
283
+ \biofigadjskip=\skip57
284
+ (amsthm.sty
285
+ Package: amsthm 2020/05/29 v2.20.6
286
+ \thm@style=\toks23
287
+ \thm@bodyfont=\toks24
288
+ \thm@headfont=\toks25
289
+ \thm@notefont=\toks26
290
+ \thm@headpunct=\toks27
291
+ \thm@preskip=\skip58
292
+ \thm@postskip=\skip59
293
+ \thm@headsep=\skip60
294
+ \dth@everypar=\toks28
295
+ ) (fix-cm.sty
296
+ Package: fix-cm 2020/11/24 v1.1t fixes to LaTeX
297
+ (ts1enc.def
298
+ File: ts1enc.def 2001/06/05 v3.0e (jk/car/fm) Standard LaTeX file
299
+ LaTeX Font Info: Redeclaring font encoding TS1 on input line 47.
300
+ )) (natbib.sty
301
+ Package: natbib 2010/09/13 8.31b (PWD, AO)
302
+ \bibhang=\skip61
303
+ \bibsep=\skip62
304
+ LaTeX Info: Redefining \cite on input line 694.
305
+ \c@NAT@ctr=\count285
306
+ )) (amsmath.sty
307
+ Package: amsmath 2021/10/15 v2.17l AMS math features
308
+ \@mathmargin=\skip63
309
+ For additional information on amsmath, use the `?' option.
310
+ (amstext.sty
311
+ Package: amstext 2021/08/26 v2.01 AMS text
312
+ (amsgen.sty
313
+ File: amsgen.sty 1999/11/30 v2.0 generic functions
314
+ \@emptytoks=\toks29
315
+ \ex@=\dimen175
316
+ )) (amsbsy.sty
317
+ Package: amsbsy 1999/11/29 v1.2d Bold Symbols
318
+ \pmbraise@=\dimen176
319
+ ) (amsopn.sty
320
+ Package: amsopn 2021/08/26 v2.02 operator names
321
+ )
322
+ \inf@bad=\count286
323
+ LaTeX Info: Redefining \frac on input line 234.
324
+ \uproot@=\count287
325
+ \leftroot@=\count288
326
+ LaTeX Info: Redefining \overline on input line 399.
327
+ \classnum@=\count289
328
+ \DOTSCASE@=\count290
329
+ LaTeX Info: Redefining \ldots on input line 496.
330
+ LaTeX Info: Redefining \dots on input line 499.
331
+ LaTeX Info: Redefining \cdots on input line 620.
332
+ \Mathstrutbox@=\box70
333
+ \strutbox@=\box71
334
+ \big@size=\dimen177
335
+ LaTeX Font Info: Redeclaring font encoding OML on input line 743.
336
+ LaTeX Font Info: Redeclaring font encoding OMS on input line 744.
337
+ \macc@depth=\count291
338
+ \c@MaxMatrixCols=\count292
339
+ \dotsspace@=\muskip17
340
+ \c@parentequation=\count293
341
+ \dspbrk@lvl=\count294
342
+ \tag@help=\toks30
343
+ \row@=\count295
344
+ \column@=\count296
345
+ \maxfields@=\count297
346
+ \andhelp@=\toks31
347
+ \eqnshift@=\dimen178
348
+ \alignsep@=\dimen179
349
+ \tagshift@=\dimen180
350
+ \tagwidth@=\dimen181
351
+ \totwidth@=\dimen182
352
+ \lineht@=\dimen183
353
+ \@envbody=\toks32
354
+ \multlinegap=\skip64
355
+ \multlinetaggap=\skip65
356
+ \mathdisplay@stack=\toks33
357
+ LaTeX Info: Redefining \[ on input line 2938.
358
+ LaTeX Info: Redefining \] on input line 2939.
359
+ ) (amssymb.sty
360
+ Package: amssymb 2013/01/14 v3.01 AMS font symbols
361
+
362
+ (amsfonts.sty
363
+ Package: amsfonts 2013/01/14 v3.01 Basic AMSFonts support
364
+ \symAMSa=\mathgroup4
365
+ \symAMSb=\mathgroup5
366
+ LaTeX Font Info: Redeclaring math symbol \hbar on input line 98.
367
+ LaTeX Font Info: Overwriting math alphabet `\mathfrak' in version `bold'
368
+ (Font) U/euf/m/n --> U/euf/b/n on input line 106.
369
+ )) (booktabs.sty
370
+ Package: booktabs 2020/01/12 v1.61803398 Publication quality tables
371
+ \heavyrulewidth=\dimen184
372
+ \lightrulewidth=\dimen185
373
+ \cmidrulewidth=\dimen186
374
+ \belowrulesep=\dimen187
375
+ \belowbottomsep=\dimen188
376
+ \aboverulesep=\dimen189
377
+ \abovetopsep=\dimen190
378
+ \cmidrulesep=\dimen191
379
+ \cmidrulekern=\dimen192
380
+ \defaultaddspace=\dimen193
381
+ \@cmidla=\count298
382
+ \@cmidlb=\count299
383
+ \@aboverulesep=\dimen194
384
+ \@belowrulesep=\dimen195
385
+ \@thisruleclass=\count300
386
+ \@lastruleclass=\count301
387
+ \@thisrulewidth=\dimen196
388
+ ) (array.sty
389
+ Package: array 2021/10/04 v2.5f Tabular extension package (FMi)
390
+ \col@sep=\dimen197
391
+ \ar@mcellbox=\box72
392
+ \extrarowheight=\dimen198
393
+ \NC@list=\toks34
394
+ \extratabsurround=\skip66
395
+ \backup@length=\skip67
396
+ \ar@cellbox=\box73
397
+ ) (multirow.sty
398
+ Package: multirow 2021/03/15 v2.8 Span multiple rows of a table
399
+ \multirow@colwidth=\skip68
400
+ \multirow@cntb=\count302
401
+ \multirow@dima=\skip69
402
+ \bigstrutjot=\dimen199
403
+ ) (longtable.sty
404
+ Package: longtable 2021-09-01 v4.17 Multi-page Table package (DPC)
405
+ \LTleft=\skip70
406
+ \LTright=\skip71
407
+ \LTpre=\skip72
408
+ \LTpost=\skip73
409
+ \LTchunksize=\count303
410
+ \LTcapwidth=\dimen256
411
+ \LT@head=\box74
412
+ \LT@firsthead=\box75
413
+ \LT@foot=\box76
414
+ \LT@lastfoot=\box77
415
+ \LT@gbox=\box78
416
+ \LT@cols=\count304
417
+ \LT@rows=\count305
418
+ \c@LT@tables=\count306
419
+ \c@LT@chunks=\count307
420
+ \LT@p@ftn=\toks35
421
+ )
422
+ (microtype.sty
423
+ Package: microtype 2022/03/14 v3.0d Micro-typographical refinements (RS)
424
+ (etoolbox.sty
425
+ Package: etoolbox 2020/10/05 v2.5k e-TeX tools for LaTeX (JAW)
426
+ \etb@tempcnta=\count308
427
+ )
428
+ \MT@toks=\toks36
429
+ \MT@tempbox=\box79
430
+ \MT@count=\count309
431
+ LaTeX Info: Redefining \noprotrusionifhmode on input line 1027.
432
+ LaTeX Info: Redefining \leftprotrusion on input line 1028.
433
+ LaTeX Info: Redefining \rightprotrusion on input line 1036.
434
+ LaTeX Info: Redefining \textls on input line 1195.
435
+ \MT@outer@kern=\dimen257
436
+ LaTeX Info: Redefining \textmicrotypecontext on input line 1781.
437
+ \MT@listname@count=\count310
438
+ (microtype-xetex.def
439
+ File: microtype-xetex.def 2022/03/14 v3.0d Definitions specific to xetex (RS)
440
+ LaTeX Info: Redefining \lsstyle on input line 236.
441
+ )
442
+ Package microtype Info: Loading configuration file microtype.cfg.
443
+ (microtype.cfg
444
+ File: microtype.cfg 2022/03/14 v3.0d microtype main configuration file (RS)
445
+ ))
446
+ (xcolor.sty
447
+ Package: xcolor 2021/10/31 v2.13 LaTeX color extensions (UK)
448
+ (color.cfg
449
+ File: color.cfg 2016/01/02 v1.6 sample color configuration
450
+ )
451
+ Package xcolor Info: Driver file: xetex.def on input line 227.
452
+ Package xcolor Info: Model `cmy' substituted by `cmy0' on input line 1352.
453
+ Package xcolor Info: Model `RGB' extended on input line 1368.
454
+ Package xcolor Info: Model `HTML' substituted by `rgb' on input line 1370.
455
+ Package xcolor Info: Model `Hsb' substituted by `hsb' on input line 1371.
456
+ Package xcolor Info: Model `tHsb' substituted by `hsb' on input line 1372.
457
+ Package xcolor Info: Model `HSB' substituted by `hsb' on input line 1373.
458
+ Package xcolor Info: Model `Gray' substituted by `gray' on input line 1374.
459
+ Package xcolor Info: Model `wave' substituted by `hsb' on input line 1375.
460
+ ) (macros) (l3backend-xetex.def
461
+ File: l3backend-xetex.def 2022-02-07 L3 backend support: XeTeX
462
+ \c__kernel_sys_dvipdfmx_version_int=\count311
463
+ \l__color_backend_stack_int=\count312
464
+ \g__color_backend_stack_int=\count313
465
+ \g__graphics_track_int=\count314
466
+ \l__pdf_internal_box=\box80
467
+ \g__pdf_backend_object_int=\count315
468
+ \g__pdf_backend_annotation_int=\count316
469
+ \g__pdf_backend_link_int=\count317
470
+ ) (main.aux)
471
+ \openout1 = `main.aux'.
472
+
473
+ LaTeX Font Info: Checking defaults for OML/cmm/m/it on input line 15.
474
+ LaTeX Font Info: ... okay on input line 15.
475
+ LaTeX Font Info: Checking defaults for OMS/cmsy/m/n on input line 15.
476
+ LaTeX Font Info: ... okay on input line 15.
477
+ LaTeX Font Info: Checking defaults for OT1/cmr/m/n on input line 15.
478
+ LaTeX Font Info: ... okay on input line 15.
479
+ LaTeX Font Info: Checking defaults for T1/cmr/m/n on input line 15.
480
+ LaTeX Font Info: ... okay on input line 15.
481
+ LaTeX Font Info: Checking defaults for TS1/cmr/m/n on input line 15.
482
+ LaTeX Font Info: ... okay on input line 15.
483
+ LaTeX Font Info: Checking defaults for TU/lmr/m/n on input line 15.
484
+ LaTeX Font Info: ... okay on input line 15.
485
+ LaTeX Font Info: Checking defaults for OMX/cmex/m/n on input line 15.
486
+ LaTeX Font Info: ... okay on input line 15.
487
+ LaTeX Font Info: Checking defaults for U/cmr/m/n on input line 15.
488
+ LaTeX Font Info: ... okay on input line 15.
489
+ LaTeX Font Info: Checking defaults for PD1/pdf/m/n on input line 15.
490
+ LaTeX Font Info: ... okay on input line 15.
491
+ LaTeX Font Info: Checking defaults for PU/pdf/m/n on input line 15.
492
+ LaTeX Font Info: ... okay on input line 15.
493
+
494
+ *geometry* driver: auto-detecting
495
+ *geometry* detected driver: xetex
496
+ *geometry* verbose mode - [ preamble ] result:
497
+ * driver: xetex
498
+ * paper: custom
499
+ * layout: <same size as paper>
500
+ * layoutoffset:(h,v)=(0.0pt,0.0pt)
501
+ * bindingoffset: 17.07164pt
502
+ * modes: twoside
503
+ * h-part:(L,W,R)=(83.37448pt, 372.0pt, 125.06175pt)
504
+ * v-part:(T,H,B)=(73.97716pt, 552.69478pt, 218.37491pt)
505
+ * \paperwidth=597.50787pt
506
+ * \paperheight=845.04684pt
507
+ * \textwidth=372.0pt
508
+ * \textheight=552.69478pt
509
+ * \oddsidemargin=28.17613pt
510
+ * \evensidemargin=52.79176pt
511
+ * \topmargin=-19.72638pt
512
+ * \headheight=5.5pt
513
+ * \headsep=15.93355pt
514
+ * \topskip=10.0pt
515
+ * \footskip=28.45274pt
516
+ * \marginparwidth=34.1433pt
517
+ * \marginparsep=14.22636pt
518
+ * \columnsep=14.22636pt
519
+ * \skip\footins=8.0pt plus 4.0pt
520
+ * \hoffset=0.0pt
521
+ * \voffset=0.0pt
522
+ * \mag=1000
523
+ * \@twocolumnfalse
524
+ * \@twosidetrue
525
+ * \@mparswitchtrue
526
+ * \@reversemargintrue
527
+ * (1in=72.27pt=25.4mm, 1cm=28.453pt)
528
+
529
+ LaTeX Info: Redefining \S on input line 15.
530
+ LaTeX Font Info: Redeclaring symbol font `AMSa' on input line 15.
531
+ LaTeX Font Info: Overwriting symbol font `AMSa' in version `normal'
532
+ (Font) U/msa/m/n --> U/msa/m/n on input line 15.
533
+ LaTeX Font Info: Overwriting symbol font `AMSa' in version `bold'
534
+ (Font) U/msa/m/n --> U/msa/m/n on input line 15.
535
+ Package hyperref Info: Link coloring ON on input line 15.
536
+ (nameref.sty
537
+ Package: nameref 2021-04-02 v2.47 Cross-referencing by name of section
538
+ (refcount.sty
539
+ Package: refcount 2019/12/15 v3.6 Data extraction from label references (HO)
540
+ ) (gettitlestring.sty
541
+ Package: gettitlestring 2019/12/15 v1.6 Cleanup title references (HO)
542
+ )
543
+ \c@section@level=\count318
544
+ )
545
+ LaTeX Info: Redefining \ref on input line 15.
546
+ LaTeX Info: Redefining \pageref on input line 15.
547
+ LaTeX Info: Redefining \nameref on input line 15.
548
+ (main.out) (main.out)
549
+ \@outlinefile=\write3
550
+ \openout3 = `main.out'.
551
+
552
+ LaTeX Info: Redefining \microtypecontext on input line 15.
553
+ Package microtype Info: Applying patch `item' on input line 15.
554
+ Package microtype Info: Applying patch `toc' on input line 15.
555
+ Package microtype Info: Applying patch `eqnum' on input line 15.
556
+ Package microtype Info: Applying patch `footnote' on input line 15.
557
+ Package microtype Info: Character protrusion enabled (level 2).
558
+ Package microtype Info: Using default protrusion set `alltext'.
559
+ Package microtype Info: No adjustment of tracking.
560
+ Package microtype Info: No adjustment of spacing.
561
+ Package microtype Info: No adjustment of kerning.
562
+
563
+ (mt-LatinModernRoman.cfg
564
+ File: mt-LatinModernRoman.cfg 2021/02/21 v1.1 microtype config. file: Latin Mod
565
+ ern Roman (RS)
566
+ ) (authors) (sections/abstract)
567
+ LaTeX Font Info: Calculating math sizes for size <10.03749> on input line 22
568
+ .
569
+ (mt-cmr.cfg
570
+ File: mt-cmr.cfg 2013/05/19 v2.2 microtype config. file: Computer Modern Roman
571
+ (RS)
572
+ )
573
+ LaTeX Font Info: Trying to load font information for U+msa on input line 22.
574
+
575
+ (umsa.fd
576
+ File: umsa.fd 2013/01/14 v3.01 AMS symbols A
577
+ )
578
+ (mt-msa.cfg
579
+ File: mt-msa.cfg 2006/02/04 v1.1 microtype config. file: AMS symbols (a) (RS)
580
+ )
581
+ LaTeX Font Info: Trying to load font information for U+msb on input line 22.
582
+
583
+ (umsb.fd
584
+ File: umsb.fd 2013/01/14 v3.01 AMS symbols B
585
+ ) (mt-msb.cfg
586
+ File: mt-msb.cfg 2005/06/01 v1.0 microtype config. file: AMS symbols (b) (RS)
587
+ ) (sections/introduction
588
+ Underfull \vbox (badness 10000) has occurred while \output is active []
589
+
590
+ [1
591
+
592
+ ]
593
+ Underfull \hbox (badness 3942) in paragraph at lines 9--10
594
+ \TU/lmr/m/n/10.03749 single-cell expression profiles from bulk transcriptomes.
595
+ Bulk2Space[[]] and
596
+ []
597
+
598
+
599
+ Underfull \vbox (badness 10000) has occurred while \output is active []
600
+
601
+ [2])
602
+ (sections/results_fig1
603
+ Underfull \vbox (badness 10000) has occurred while \output is active []
604
+
605
+ [3])
606
+ (sections/results_fig2
607
+ Underfull \vbox (badness 10000) has occurred while \output is active []
608
+
609
+ [4]
610
+ Underfull \vbox (badness 10000) has occurred while \output is active []
611
+
612
+ [5])
613
+ (sections/results_fig3
614
+ Underfull \vbox (badness 10000) has occurred while \output is active []
615
+
616
+ [6])
617
+ (sections/results_fig4
618
+ Underfull \vbox (badness 10000) has occurred while \output is active []
619
+
620
+ [7]
621
+ Underfull \vbox (badness 10000) has occurred while \output is active []
622
+
623
+ [8])
624
+ (sections/results_fig5
625
+ Underfull \vbox (badness 10000) has occurred while \output is active []
626
+
627
+ [9])
628
+ (sections/results_fig6) (sections/discussion
629
+ Underfull \vbox (badness 10000) has occurred while \output is active []
630
+
631
+ [10]
632
+ Underfull \vbox (badness 10000) has occurred while \output is active []
633
+
634
+ [11])
635
+ (sections/methods_model
636
+ Underfull \vbox (badness 10000) has occurred while \output is active []
637
+
638
+ [12]
639
+ Underfull \vbox (badness 10000) has occurred while \output is active []
640
+
641
+ [13]
642
+ Underfull \vbox (badness 10000) has occurred while \output is active []
643
+
644
+ [14]
645
+ Underfull \vbox (badness 10000) has occurred while \output is active []
646
+
647
+ [15])
648
+ (sections/methods_paired
649
+ Underfull \vbox (badness 10000) has occurred while \output is active []
650
+
651
+ [16]
652
+ Underfull \vbox (badness 10000) has occurred while \output is active []
653
+
654
+ [17]
655
+ Underfull \vbox (badness 10000) has occurred while \output is active []
656
+
657
+ [18]
658
+ Underfull \vbox (badness 10000) has occurred while \output is active []
659
+
660
+ [19]
661
+ Underfull \vbox (badness 10000) has occurred while \output is active []
662
+
663
+ [20])
664
+ (sections/methods_eval
665
+ Underfull \vbox (badness 10000) has occurred while \output is active []
666
+
667
+ [21]
668
+ Underfull \vbox (badness 10000) has occurred while \output is active []
669
+
670
+ [22]
671
+ Underfull \vbox (badness 10000) has occurred while \output is active []
672
+
673
+ [23]
674
+ Underfull \vbox (badness 10000) has occurred while \output is active []
675
+
676
+ [24])
677
+ (sections/declarations
678
+ Underfull \vbox (badness 10000) has occurred while \output is active []
679
+
680
+ [25]
681
+ Package microtype Info: Loading generic protrusion settings for font family
682
+ (microtype) `lmtt' (encoding: TU).
683
+ (microtype) For optimal results, create family-specific settings.
684
+ (microtype) See the microtype manual for details.
685
+
686
+ Underfull \vbox (badness 10000) has occurred while \output is active []
687
+
688
+ [26])
689
+ (main.bbl
690
+ Underfull \vbox (badness 10000) has occurred while \output is active []
691
+
692
+ [27]
693
+ Underfull \vbox (badness 10000) has occurred while \output is active []
694
+
695
+ [28]
696
+ Underfull \hbox (badness 6725) in paragraph at lines 179--189
697
+ \TU/lmr/m/n/10.03749 Precision and Recall Metric for Assessing Generative Model
698
+ s. In
699
+ []
700
+
701
+
702
+ Underfull \vbox (badness 10000) has occurred while \output is active []
703
+
704
+ [29]
705
+ Underfull \hbox (badness 1783) in paragraph at lines 302--308
706
+ \TU/lmr/m/n/10.03749 protein biomarkers of checkpoint inhibitor-induced liver i
707
+ njury. \TU/lmr/m/it/10.03749 Cancer
708
+ []
709
+
710
+
711
+ Underfull \vbox (badness 10000) has occurred while \output is active []
712
+
713
+ [30]
714
+ Underfull \vbox (badness 10000) has occurred while \output is active []
715
+
716
+ [31])
717
+ (sections/fig1
718
+ Underfull \vbox (badness 10000) has occurred while \output is active []
719
+
720
+ [32]
721
+ File: figures/deck_20261010/sec02_backbone_compare.pdf Graphic file (type pdf)
722
+ <use figures/deck_20261010/sec02_backbone_compare.pdf>
723
+ File: figures/deck_20261010/fig01_architecture_nature.pdf Graphic file (type pd
724
+ f)
725
+ <use figures/deck_20261010/fig01_architecture_nature.pdf>
726
+ File: figures/deck_20261010/sec02_bulk_conditioning.pdf Graphic file (type pdf)
727
+
728
+ <use figures/deck_20261010/sec02_bulk_conditioning.pdf>
729
+ File: figures/deck_20261010/fig01_corpus_nature.pdf Graphic file (type pdf)
730
+ <use figures/deck_20261010/fig01_corpus_nature.pdf>
731
+
732
+ Underfull \vbox (badness 10000) has occurred while \output is active []
733
+
734
+ [33
735
+
736
+ ]
737
+ File: figures/deck_20261010/sec03_width_loss.pdf Graphic file (type pdf)
738
+ <use figures/deck_20261010/sec03_width_loss.pdf>
739
+ File: figures/deck_20261010/sec03_width_bench.pdf Graphic file (type pdf)
740
+ <use figures/deck_20261010/sec03_width_bench.pdf>
741
+ File: figures/deck_20261010/sec03_panel.pdf Graphic file (type pdf)
742
+ <use figures/deck_20261010/sec03_panel.pdf>
743
+
744
+ Underfull \hbox (badness 3029) in paragraph at lines 9--9
745
+ \TU/lmr/bx/n/9 Design and performance of PBISC-Diffusion. a\TU/lmr/m/n/9 , Thre
746
+ e diffusion backbones:
747
+ []
748
+
749
+
750
+ Underfull \vbox (badness 10000) has occurred while \output is active []
751
+
752
+ [34])
753
+ (sections/fig2
754
+ Underfull \vbox (badness 10000) has occurred while \output is active []
755
+
756
+ [35]
757
+ File: figures/deck_20261010/sec05_condition_space.pdf Graphic file (type pdf)
758
+ <use figures/deck_20261010/sec05_condition_space.pdf>
759
+ File: figures/deck_20261010/sec05_shift_cohorts.pdf Graphic file (type pdf)
760
+ <use figures/deck_20261010/sec05_shift_cohorts.pdf>
761
+ File: figures/deck_20261010/sec05_cells_umap.pdf Graphic file (type pdf)
762
+ <use figures/deck_20261010/sec05_cells_umap.pdf>
763
+ File: figures/deck_20261010/sec05_cells_metrics.pdf Graphic file (type pdf)
764
+ <use figures/deck_20261010/sec05_cells_metrics.pdf>
765
+ File: figures/deck_20261010/sec06_ft_method.pdf Graphic file (type pdf)
766
+ <use figures/deck_20261010/sec06_ft_method.pdf>
767
+ File: figures/deck_20261010/sec06_eval_design.pdf Graphic file (type pdf)
768
+ <use figures/deck_20261010/sec06_eval_design.pdf>
769
+
770
+ Underfull \vbox (badness 10000) has occurred while \output is active []
771
+
772
+ [36
773
+
774
+ ]
775
+ File: figures/deck_20261010/sec04_metrics_overview.pdf Graphic file (type pdf)
776
+ <use figures/deck_20261010/sec04_metrics_overview.pdf>
777
+ File: figures/deck_20261010/fig2_healthy_cells.pdf Graphic file (type pdf)
778
+ <use figures/deck_20261010/fig2_healthy_cells.pdf>
779
+ File: figures/deck_20261010/fig2_healthy_realism.pdf Graphic file (type pdf)
780
+ <use figures/deck_20261010/fig2_healthy_realism.pdf>
781
+
782
+ Underfull \vbox (badness 10000) has occurred while \output is active []
783
+
784
+ [37]
785
+ File: figures/deck_20261010/fig2_healthy_modes.pdf Graphic file (type pdf)
786
+ <use figures/deck_20261010/fig2_healthy_modes.pdf>
787
+ File: figures/deck_20261010/fig2_healthy_pairs.pdf Graphic file (type pdf)
788
+ <use figures/deck_20261010/fig2_healthy_pairs.pdf>
789
+ File: figures/deck_20261010/fig2_healthy_rank.pdf Graphic file (type pdf)
790
+ <use figures/deck_20261010/fig2_healthy_rank.pdf>
791
+
792
+ Underfull \vbox (badness 10000) has occurred while \output is active []
793
+
794
+ [38])
795
+ (sections/fig3
796
+ Underfull \vbox (badness 10000) has occurred while \output is active []
797
+
798
+ [39]
799
+ File: figures/deck_20261010/fig3_healthy_fewpair.pdf Graphic file (type pdf)
800
+ <use figures/deck_20261010/fig3_healthy_fewpair.pdf>
801
+ File: figures/deck_20261010/fig3_healthy_pairs.pdf Graphic file (type pdf)
802
+ <use figures/deck_20261010/fig3_healthy_pairs.pdf>
803
+ File: figures/deck_20261010/fig3_healthy_copy.pdf Graphic file (type pdf)
804
+ <use figures/deck_20261010/fig3_healthy_copy.pdf>
805
+ File: figures/deck_20261010/fig3_time_days.pdf Graphic file (type pdf)
806
+ <use figures/deck_20261010/fig3_time_days.pdf>
807
+
808
+ Underfull \vbox (badness 10000) has occurred while \output is active []
809
+
810
+ [40
811
+
812
+ ]
813
+ File: figures/deck_20261010/sec09_time_to_apply.pdf Graphic file (type pdf)
814
+ <use figures/deck_20261010/sec09_time_to_apply.pdf>
815
+
816
+ Underfull \vbox (badness 10000) has occurred while \output is active []
817
+
818
+ [41])
819
+ (sections/fig4
820
+ Underfull \vbox (badness 10000) has occurred while \output is active []
821
+
822
+ [42]
823
+ File: figures/deck_20261010/sec09_cohorts.pdf Graphic file (type pdf)
824
+ <use figures/deck_20261010/sec09_cohorts.pdf>
825
+ File: figures/deck_20261010/fig4_disease_fewpair.pdf Graphic file (type pdf)
826
+ <use figures/deck_20261010/fig4_disease_fewpair.pdf>
827
+ File: figures/deck_20261010/fig4_disease_fivefold.pdf Graphic file (type pdf)
828
+ <use figures/deck_20261010/fig4_disease_fivefold.pdf>
829
+ File: figures/deck_20261010/sec09_cat_curves.pdf Graphic file (type pdf)
830
+ <use figures/deck_20261010/sec09_cat_curves.pdf>
831
+
832
+ Underfull \vbox (badness 10000) has occurred while \output is active []
833
+
834
+ [43
835
+
836
+ ]
837
+ File: figures/deck_20261010/secS_deconv_disease.pdf Graphic file (type pdf)
838
+ <use figures/deck_20261010/secS_deconv_disease.pdf>
839
+ File: figures/deck_20261010/sec04_sle_benchmark.pdf Graphic file (type pdf)
840
+ <use figures/deck_20261010/sec04_sle_benchmark.pdf>
841
+ File: figures/deck_20261010/sec04_sle_per_celltype.pdf Graphic file (type pdf)
842
+ <use figures/deck_20261010/sec04_sle_per_celltype.pdf>
843
+
844
+ Underfull \vbox (badness 10000) has occurred while \output is active []
845
+
846
+ [44])
847
+ (sections/fig5
848
+ Underfull \vbox (badness 10000) has occurred while \output is active []
849
+
850
+ [45]
851
+ File: figures/deck_20261010/fig5_rare_fraction.pdf Graphic file (type pdf)
852
+ <use figures/deck_20261010/fig5_rare_fraction.pdf>
853
+ File: figures/deck_20261010/fig5_rare_donors.pdf Graphic file (type pdf)
854
+ <use figures/deck_20261010/fig5_rare_donors.pdf>
855
+ File: figures/deck_20261010/fig5_rare_fivefold.pdf Graphic file (type pdf)
856
+ <use figures/deck_20261010/fig5_rare_fivefold.pdf>
857
+
858
+ Underfull \vbox (badness 10000) has occurred while \output is active []
859
+
860
+ [46
861
+
862
+ ]
863
+ File: figures/deck_20261010/sec05_behcet_direction.pdf Graphic file (type pdf)
864
+ <use figures/deck_20261010/sec05_behcet_direction.pdf>
865
+
866
+ Underfull \vbox (badness 10000) has occurred while \output is active []
867
+
868
+ [47])
869
+ (sections/fig6
870
+ Underfull \vbox (badness 10000) has occurred while \output is active []
871
+
872
+ [48])
873
+ Underfull \vbox (badness 10000) has occurred while \output is active []
874
+
875
+ [49
876
+
877
+ ]
878
+ (main.aux)
879
+ Package rerunfilecheck Info: File `main.out' has not changed.
880
+ (rerunfilecheck) Checksum: D41D8CD98F00B204E9800998ECF8427E;0.
881
+ )
882
+ Output written on main.xdv (49 pages, 1177572 bytes).
paper-releases/pbisc-diffusion/updates/20261012T085105Z-introduction-citation-integration/diffusion/metadata/NOTE.md ADDED
@@ -0,0 +1,5 @@
 
 
 
 
 
 
1
+ # PBISC-diffusion update 20261012T085105Z-introduction-citation-integration
2
+
3
+ Integrated user-revised eight-paragraph Introduction, checked primary sources, reused 23 existing bibliography entries, and added relevant in-text citations without new papers. Qualified rare populations as literature-defined and observed in evaluated cohorts; retained evaluated-settings five-pair statement. Approved title and Abstract unchanged. Rebuilt PDF with no unresolved citations/references and checked rendered text. GitHub main commit 6713531e080f75abc4b046a7a26402a68c49c9c3; detailed citation audit in manuscript/editorial/introduction_citation_review_20261012.json. No new inference or scientific result validation performed.
4
+
5
+ Payload states are recorded as supplied. Inference locations are pointers, not archived generated outputs.
paper-releases/pbisc-diffusion/updates/20261012T085105Z-introduction-citation-integration/diffusion/metadata/inference_locations.json ADDED
@@ -0,0 +1,5 @@
 
 
 
 
 
 
1
+ {
2
+ "locations": [],
3
+ "project_id": "pbisc-diffusion",
4
+ "update_id": "20261012T085105Z-introduction-citation-integration"
5
+ }
paper-releases/pbisc-diffusion/updates/20261012T085105Z-introduction-citation-integration/diffusion/metadata/request.json ADDED
@@ -0,0 +1,37 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "assets": [
3
+ {
4
+ "host": "server_1",
5
+ "kind": "document",
6
+ "source": "/home/sj_server_1/PBISC/paper-release-20260928/manuscript/sections/introduction.tex",
7
+ "state": "completed"
8
+ },
9
+ {
10
+ "host": "server_1",
11
+ "kind": "metadata",
12
+ "source": "/home/sj_server_1/PBISC/paper-release-20260928/manuscript/editorial/introduction_citation_review_20261012.json",
13
+ "state": "completed"
14
+ },
15
+ {
16
+ "host": "server_1",
17
+ "kind": "report",
18
+ "source": "/home/sj_server_1/PBISC/paper-release-20260928/manuscript/main.pdf",
19
+ "state": "completed"
20
+ },
21
+ {
22
+ "host": "server_1",
23
+ "kind": "log",
24
+ "source": "/home/sj_server_1/PBISC/paper-release-20260928/manuscript/editorial/main_introduction_citations_20261012_build.log",
25
+ "state": "completed"
26
+ },
27
+ {
28
+ "host": "server_1",
29
+ "kind": "log",
30
+ "source": "/home/sj_server_1/PBISC/paper-release-20260928/manuscript/editorial/main_introduction_citations_20261012_tex.log",
31
+ "state": "completed"
32
+ }
33
+ ],
34
+ "inference_locations": [],
35
+ "project_id": "pbisc-diffusion",
36
+ "summary": "Integrated user-revised eight-paragraph Introduction, checked primary sources, reused 23 existing bibliography entries, and added relevant in-text citations without new papers. Qualified rare populations as literature-defined and observed in evaluated cohorts; retained evaluated-settings five-pair statement. Approved title and Abstract unchanged. Rebuilt PDF with no unresolved citations/references and checked rendered text. GitHub main commit 6713531e080f75abc4b046a7a26402a68c49c9c3; detailed citation audit in manuscript/editorial/introduction_citation_review_20261012.json. No new inference or scientific result validation performed."
37
+ }