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  1. paper-releases/pbisc-diffusion/updates/20261005T063808Z-no-pretraining-ablation-f0/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/logs/run_queue_ye2026_sepsis_scratch_20261005_20261005T095835.log +22 -0
  2. paper-releases/pbisc-diffusion/updates/20261005T063808Z-no-pretraining-ablation-f0/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/logs/score-sepsis-f0-scratch_20261005T112715.log +36 -0
  3. paper-releases/pbisc-diffusion/updates/20261005T063808Z-no-pretraining-ablation-f0/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/logs/score-sepsis-f0-scratch_20261005T134415.log +41 -0
  4. paper-releases/pbisc-diffusion/updates/20261005T063808Z-no-pretraining-ablation-f0/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/logs/score-sepsis-f0-scratch_20261005T135759.log +46 -0
paper-releases/pbisc-diffusion/updates/20261005T063808Z-no-pretraining-ablation-f0/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/logs/run_queue_ye2026_sepsis_scratch_20261005_20261005T095835.log ADDED
@@ -0,0 +1,22 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ 2026-10-05T09:58:39 --- train fold0/scratch_full mode=full lr=2e-4 (ok: 67C; GPU via ml-run flock)
2
+ 2026-10-05T11:25:32 train /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold0/scratch_full done: step 100000 val 0.11544 (pre 1.78181) de6a5f0feac4
3
+ 2026-10-05T11:25:32 queue=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/logs/q_ye2_f0_scratch_full_sppD.txt ckpt=checkpoint_ft.pt sha=de6a5f0feac4 steps=50 readout=bernoulli thr=0.0 py=/home/sj_server_1/miniforge3/envs/b2sc-cu130/bin/python
4
+ 2026-10-05T11:25:36 --- ye2_f0_scratch_full seed=20260927 (ok: 60C; GPU via ml-run flock)
5
+ 2026-10-05T11:26:47 ye2_f0_scratch_full done: cells ? zero_frac 0.9361 96d7b271d204
6
+ 2026-10-05T11:26:47 queue finished: ok=1 failed=0
7
+ 2026-10-05T11:26:47 sample ye2_f0_scratch_full done
8
+ 2026-10-05T11:26:51 --- train fold0/scratch_n5 mode=full lr=2e-4 (ok: 62C; GPU via ml-run flock)
9
+ 2026-10-05T12:28:07 train /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold0/scratch_n5 done: step 66000 val 0.12229 (pre 1.78181) 11665f81339d
10
+ 2026-10-05T12:28:07 queue=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/logs/q_ye2_f0_scratch_n5_l69g.txt ckpt=checkpoint_ft.pt sha=11665f81339d steps=50 readout=bernoulli thr=0.0 py=/home/sj_server_1/miniforge3/envs/b2sc-cu130/bin/python
11
+ 2026-10-05T12:28:12 --- ye2_f0_scratch_n5 seed=20260927 (ok: 70C; GPU via ml-run flock)
12
+ 2026-10-05T12:29:19 ye2_f0_scratch_n5 done: cells ? zero_frac 0.9318 80c0222cf055
13
+ 2026-10-05T12:29:19 queue finished: ok=1 failed=0
14
+ 2026-10-05T12:29:19 sample ye2_f0_scratch_n5 done
15
+ 2026-10-05T12:29:23 --- train fold0/scratch_recipe mode=full lr=2e-4 (ok: 66C; GPU via ml-run flock)
16
+ 2026-10-05T13:55:41 train /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold0/scratch_recipe done: step 100000 val 0.11552 (pre 1.78181) ec6af76e986f
17
+ 2026-10-05T13:55:41 queue=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/logs/q_ye2_f0_scratch_recipe_LU0t.txt ckpt=checkpoint_ft.pt sha=ec6af76e986f steps=50 readout=bernoulli thr=0.0 py=/home/sj_server_1/miniforge3/envs/b2sc-cu130/bin/python
18
+ 2026-10-05T13:55:46 --- ye2_f0_scratch_recipe seed=20260927 (ok: 65C; GPU via ml-run flock)
19
+ 2026-10-05T13:56:52 ye2_f0_scratch_recipe done: cells ? zero_frac 0.9366 c3eb533e26c9
20
+ 2026-10-05T13:56:52 queue finished: ok=1 failed=0
21
+ 2026-10-05T13:56:52 sample ye2_f0_scratch_recipe done
22
+ 2026-10-05T13:56:52 queue finished: failed=0
paper-releases/pbisc-diffusion/updates/20261005T063808Z-no-pretraining-ablation-f0/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/logs/score-sepsis-f0-scratch_20261005T112715.log ADDED
@@ -0,0 +1,36 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ 11:27:22 ye2026_sepsis: 17 scored donors, 6 arm(s); fitting the observed reference
2
+ 11:27:24 reference: R1 2550 cells, PCA var 0.360, R2 control P/C 0.9969/1.0000; contrast on
3
+ 11:27:24 observed top-50 DEG lists: T 50 (sig 113, 12+5 donors, 61162 cells), B 50 (sig 164, 12+5 donors, 21022 cells), Mono 50 (sig 932, 12+5 donors, 31471 cells), NK 50 (sig 122, 12+5 donors, 10457 cells), DC 50 (sig 152, 12+5 donors, 1035 cells)
4
+ 11:27:24 zs__raw: loading generated_counts (25500 cells in the NPZ, 25500 scored)
5
+ 11:27:27 zs__raw: Poisson read-out nnz 8627169 (whole NPZ), median library 1017; annotating
6
+ 11:27:35 zs__raw: L1 0.4507 (null 0.5132314215340571) P/C 0.8788/0.1808 pb r 0.8828 top1 0.412 mono 37.3% (11.5 s)
7
+ 11:27:35 zs__raw: top-50 DEG 0/250 (T 0, B 0, Mono 0, NK 0, DC 0); broadcast 0 (0.13 s)
8
+ 11:27:35 lora_n5__raw: loading generated_counts (25500 cells in the NPZ, 25500 scored)
9
+ 11:27:39 lora_n5__raw: Poisson read-out nnz 7871135 (whole NPZ), median library 2526; annotating
10
+ 11:27:46 lora_n5__raw: L1 0.3627 (null 0.5132314215340571) P/C 0.9922/0.8098 pb r 0.8927 top1 0.235 mono 28.2% (10.8 s)
11
+ 11:27:46 lora_n5__raw: top-50 DEG 1/250 (T 0, B 0, Mono 0, NK 0, DC 1); broadcast 0 (0.14 s)
12
+ 11:27:46 real_lora__raw: loading generated_counts (25500 cells in the NPZ, 25500 scored)
13
+ 11:27:48 real_lora__raw: Poisson read-out nnz 7052967 (whole NPZ), median library 1815; annotating
14
+ 11:27:56 real_lora__raw: L1 0.3732 (null 0.5132314215340571) P/C 0.9859/0.8584 pb r 0.8936 top1 0.471 mono 15.3% (9.5 s)
15
+ 11:27:56 real_lora__raw: top-50 DEG 1/250 (T 0, B 0, Mono 0, NK 0, DC 1); broadcast 0 (0.11 s)
16
+ 11:27:56 lora_recipe__raw: loading generated_counts (25500 cells in the NPZ, 25500 scored)
17
+ 11:27:59 lora_recipe__raw: Poisson read-out nnz 6952738 (whole NPZ), median library 1805; annotating
18
+ 11:28:06 lora_recipe__raw: L1 0.3852 (null 0.5132314215340571) P/C 0.9875/0.8663 pb r 0.8919 top1 0.353 mono 15.5% (10.3 s)
19
+ 11:28:06 lora_recipe__raw: top-50 DEG 1/250 (T 0, B 0, Mono 0, NK 1, DC 0); broadcast 0 (0.1 s)
20
+ 11:28:06 real_full__raw: loading generated_counts (25500 cells in the NPZ, 25500 scored)
21
+ 11:28:09 real_full__raw: Poisson read-out nnz 6673448 (whole NPZ), median library 1736; annotating
22
+ 11:28:16 real_full__raw: L1 0.3882 (null 0.5132314215340571) P/C 0.9784/0.8714 pb r 0.9033 top1 0.353 mono 16.2% (9.9 s)
23
+ 11:28:16 real_full__raw: top-50 DEG 0/250 (T 0, B 0, Mono 0, NK 0, DC 0); broadcast 0 (0.09 s)
24
+ 11:28:16 scratch_full__raw: loading generated_counts (25500 cells in the NPZ, 25500 scored)
25
+ 11:28:19 scratch_full__raw: Poisson read-out nnz 6441460 (whole NPZ), median library 1800; annotating
26
+ 11:28:25 scratch_full__raw: L1 0.3983 (null 0.5132314215340571) P/C 0.9898/0.8620 pb r 0.9139 top1 0.235 mono 15.8% (9.8 s)
27
+ 11:28:25 scratch_full__raw: top-50 DEG 0/250 (T 0, B 0, Mono 0, NK 0, DC 0); broadcast 0 (0.09 s)
28
+ comp_l1 comp_l1_obs_loo_null precision coverage precision_dm coverage_dm pb_r_median pb_top1 mono_pct_gen mono_pct_obs median_umi_gen median_umi_obs contrast_mean_cp10k_r_gen contrast_pseudobulk_log1p_cpm_r_gen contrast_mean_cp10k_r_broadcast contrast_pseudobulk_log1p_cpm_r_broadcast deg_top50_T deg_top50_B deg_top50_Mono deg_top50_NK deg_top50_DC deg_top50_sum deg_top50_max deg_top50_sum_4type deg_top50_sum_broadcast seconds
29
+ zs__raw 0.4507 0.5132 0.8788 0.1808 0.7482 0.1612 0.8828 0.4118 37.2784 24.6001 1017.0 2022.0 0.0642 0.1278 0.4815 0.4503 0.0 0.0 0.0 0.0 0.0 0.0 250.0 0.0 0.0 11.5
30
+ lora_n5__raw 0.3627 0.5132 0.9922 0.8098 0.9918 0.9224 0.8927 0.2353 28.1686 24.6001 2526.0 2022.0 0.2327 0.1882 0.4815 0.4503 0.0 0.0 0.0 0.0 1.0 1.0 250.0 0.0 0.0 10.8
31
+ real_lora__raw 0.3732 0.5132 0.9859 0.8584 0.9769 0.9553 0.8936 0.4706 15.2588 24.6001 1815.0 2022.0 0.4869 0.3973 0.4815 0.4503 0.0 0.0 0.0 0.0 1.0 1.0 250.0 0.0 0.0 9.5
32
+ lora_recipe__raw 0.3852 0.5132 0.9875 0.8663 0.9745 0.9541 0.8919 0.3529 15.5490 24.6001 1805.0 2022.0 0.4485 0.3704 0.4815 0.4503 0.0 0.0 0.0 1.0 0.0 1.0 250.0 1.0 0.0 10.3
33
+ real_full__raw 0.3882 0.5132 0.9784 0.8714 0.9561 0.9502 0.9033 0.3529 16.1569 24.6001 1736.5 2022.0 0.4893 0.3642 0.4815 0.4503 0.0 0.0 0.0 0.0 0.0 0.0 250.0 0.0 0.0 9.9
34
+ scratch_full__raw 0.3983 0.5132 0.9898 0.8620 0.9863 0.9435 0.9139 0.2353 15.8275 24.6001 1800.0 2022.0 0.5774 0.3484 0.4815 0.4503 0.0 0.0 0.0 0.0 0.0 0.0 250.0 0.0 0.0 9.8
35
+ 11:28:25 done in 69.2 s -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/fold0_scratch_20261005
36
+ UNIT_EXIT 0
paper-releases/pbisc-diffusion/updates/20261005T063808Z-no-pretraining-ablation-f0/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/logs/score-sepsis-f0-scratch_20261005T134415.log ADDED
@@ -0,0 +1,41 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ 13:44:19 ye2026_sepsis: 17 scored donors, 7 arm(s); fitting the observed reference
2
+ 13:44:21 reference: R1 2550 cells, PCA var 0.360, R2 control P/C 0.9969/1.0000; contrast on
3
+ 13:44:21 observed top-50 DEG lists: T 50 (sig 113, 12+5 donors, 61162 cells), B 50 (sig 164, 12+5 donors, 21022 cells), Mono 50 (sig 932, 12+5 donors, 31471 cells), NK 50 (sig 122, 12+5 donors, 10457 cells), DC 50 (sig 152, 12+5 donors, 1035 cells)
4
+ 13:44:21 zs__raw: loading generated_counts (25500 cells in the NPZ, 25500 scored)
5
+ 13:44:24 zs__raw: Poisson read-out nnz 8627169 (whole NPZ), median library 1017; annotating
6
+ 13:44:31 zs__raw: L1 0.4507 (null 0.5132314215340571) P/C 0.8788/0.1808 pb r 0.8828 top1 0.412 mono 37.3% (10.1 s)
7
+ 13:44:31 zs__raw: top-50 DEG 0/250 (T 0, B 0, Mono 0, NK 0, DC 0); broadcast 0 (0.13 s)
8
+ 13:44:31 lora_n5__raw: loading generated_counts (25500 cells in the NPZ, 25500 scored)
9
+ 13:44:34 lora_n5__raw: Poisson read-out nnz 7871135 (whole NPZ), median library 2526; annotating
10
+ 13:44:40 lora_n5__raw: L1 0.3627 (null 0.5132314215340571) P/C 0.9922/0.8098 pb r 0.8927 top1 0.235 mono 28.2% (9.2 s)
11
+ 13:44:40 lora_n5__raw: top-50 DEG 1/250 (T 0, B 0, Mono 0, NK 0, DC 1); broadcast 0 (0.1 s)
12
+ 13:44:40 real_lora__raw: loading generated_counts (25500 cells in the NPZ, 25500 scored)
13
+ 13:44:43 real_lora__raw: Poisson read-out nnz 7052967 (whole NPZ), median library 1815; annotating
14
+ 13:44:49 real_lora__raw: L1 0.3732 (null 0.5132314215340571) P/C 0.9859/0.8584 pb r 0.8936 top1 0.471 mono 15.3% (9.2 s)
15
+ 13:44:49 real_lora__raw: top-50 DEG 1/250 (T 0, B 0, Mono 0, NK 0, DC 1); broadcast 0 (0.1 s)
16
+ 13:44:49 lora_recipe__raw: loading generated_counts (25500 cells in the NPZ, 25500 scored)
17
+ 13:44:52 lora_recipe__raw: Poisson read-out nnz 6952738 (whole NPZ), median library 1805; annotating
18
+ 13:44:58 lora_recipe__raw: L1 0.3852 (null 0.5132314215340571) P/C 0.9875/0.8663 pb r 0.8919 top1 0.353 mono 15.5% (8.9 s)
19
+ 13:44:58 lora_recipe__raw: top-50 DEG 1/250 (T 0, B 0, Mono 0, NK 1, DC 0); broadcast 0 (0.1 s)
20
+ 13:44:58 real_full__raw: loading generated_counts (25500 cells in the NPZ, 25500 scored)
21
+ 13:45:01 real_full__raw: Poisson read-out nnz 6673448 (whole NPZ), median library 1736; annotating
22
+ 13:45:07 real_full__raw: L1 0.3882 (null 0.5132314215340571) P/C 0.9784/0.8714 pb r 0.9033 top1 0.353 mono 16.2% (9.4 s)
23
+ 13:45:07 real_full__raw: top-50 DEG 0/250 (T 0, B 0, Mono 0, NK 0, DC 0); broadcast 0 (0.08 s)
24
+ 13:45:07 scratch_full__raw: loading generated_counts (25500 cells in the NPZ, 25500 scored)
25
+ 13:45:10 scratch_full__raw: Poisson read-out nnz 6441460 (whole NPZ), median library 1800; annotating
26
+ 13:45:17 scratch_full__raw: L1 0.3983 (null 0.5132314215340571) P/C 0.9898/0.8620 pb r 0.9139 top1 0.235 mono 15.8% (9.5 s)
27
+ 13:45:17 scratch_full__raw: top-50 DEG 0/250 (T 0, B 0, Mono 0, NK 0, DC 0); broadcast 0 (0.1 s)
28
+ 13:45:17 scratch_n5__raw: loading generated_counts (25500 cells in the NPZ, 25500 scored)
29
+ 13:45:20 scratch_n5__raw: Poisson read-out nnz 7094157 (whole NPZ), median library 2050; annotating
30
+ 13:45:27 scratch_n5__raw: L1 0.4483 (null 0.5132314215340571) P/C 0.9906/0.7980 pb r 0.9359 top1 0.059 mono 24.5% (9.8 s)
31
+ 13:45:27 scratch_n5__raw: top-50 DEG 1/250 (T 0, B 0, Mono 0, NK 0, DC 1); broadcast 0 (0.09 s)
32
+ comp_l1 comp_l1_obs_loo_null precision coverage precision_dm coverage_dm pb_r_median pb_top1 mono_pct_gen mono_pct_obs median_umi_gen median_umi_obs contrast_mean_cp10k_r_gen contrast_pseudobulk_log1p_cpm_r_gen contrast_mean_cp10k_r_broadcast contrast_pseudobulk_log1p_cpm_r_broadcast deg_top50_T deg_top50_B deg_top50_Mono deg_top50_NK deg_top50_DC deg_top50_sum deg_top50_max deg_top50_sum_4type deg_top50_sum_broadcast seconds
33
+ zs__raw 0.4507 0.5132 0.8788 0.1808 0.7482 0.1612 0.8828 0.4118 37.2784 24.6001 1017.0 2022.0 0.0642 0.1278 0.4815 0.4503 0.0 0.0 0.0 0.0 0.0 0.0 250.0 0.0 0.0 10.1
34
+ lora_n5__raw 0.3627 0.5132 0.9922 0.8098 0.9918 0.9224 0.8927 0.2353 28.1686 24.6001 2526.0 2022.0 0.2327 0.1882 0.4815 0.4503 0.0 0.0 0.0 0.0 1.0 1.0 250.0 0.0 0.0 9.2
35
+ real_lora__raw 0.3732 0.5132 0.9859 0.8584 0.9769 0.9553 0.8936 0.4706 15.2588 24.6001 1815.0 2022.0 0.4869 0.3973 0.4815 0.4503 0.0 0.0 0.0 0.0 1.0 1.0 250.0 0.0 0.0 9.2
36
+ lora_recipe__raw 0.3852 0.5132 0.9875 0.8663 0.9745 0.9541 0.8919 0.3529 15.5490 24.6001 1805.0 2022.0 0.4485 0.3704 0.4815 0.4503 0.0 0.0 0.0 1.0 0.0 1.0 250.0 1.0 0.0 8.9
37
+ real_full__raw 0.3882 0.5132 0.9784 0.8714 0.9561 0.9502 0.9033 0.3529 16.1569 24.6001 1736.5 2022.0 0.4893 0.3642 0.4815 0.4503 0.0 0.0 0.0 0.0 0.0 0.0 250.0 0.0 0.0 9.4
38
+ scratch_full__raw 0.3983 0.5132 0.9898 0.8620 0.9863 0.9435 0.9139 0.2353 15.8275 24.6001 1800.0 2022.0 0.5774 0.3484 0.4815 0.4503 0.0 0.0 0.0 0.0 0.0 0.0 250.0 0.0 0.0 9.5
39
+ scratch_n5__raw 0.4483 0.5132 0.9906 0.7980 0.9941 0.9145 0.9359 0.0588 24.4745 24.6001 2050.0 2022.0 0.1790 0.0987 0.4815 0.4503 0.0 0.0 0.0 0.0 1.0 1.0 250.0 0.0 0.0 9.8
40
+ 13:45:27 done in 70.9 s -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/fold0_scratch_20261005
41
+ UNIT_EXIT 0
paper-releases/pbisc-diffusion/updates/20261005T063808Z-no-pretraining-ablation-f0/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/logs/score-sepsis-f0-scratch_20261005T135759.log ADDED
@@ -0,0 +1,46 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ 13:58:03 ye2026_sepsis: 17 scored donors, 8 arm(s); fitting the observed reference
2
+ 13:58:04 reference: R1 2550 cells, PCA var 0.360, R2 control P/C 0.9969/1.0000; contrast on
3
+ 13:58:04 observed top-50 DEG lists: T 50 (sig 113, 12+5 donors, 61162 cells), B 50 (sig 164, 12+5 donors, 21022 cells), Mono 50 (sig 932, 12+5 donors, 31471 cells), NK 50 (sig 122, 12+5 donors, 10457 cells), DC 50 (sig 152, 12+5 donors, 1035 cells)
4
+ 13:58:04 zs__raw: loading generated_counts (25500 cells in the NPZ, 25500 scored)
5
+ 13:58:06 zs__raw: Poisson read-out nnz 8627169 (whole NPZ), median library 1017; annotating
6
+ 13:58:10 zs__raw: L1 0.4507 (null 0.5132314215340571) P/C 0.8788/0.1808 pb r 0.8828 top1 0.412 mono 37.3% (6.5 s)
7
+ 13:58:10 zs__raw: top-50 DEG 0/250 (T 0, B 0, Mono 0, NK 0, DC 0); broadcast 0 (0.06 s)
8
+ 13:58:10 lora_n5__raw: loading generated_counts (25500 cells in the NPZ, 25500 scored)
9
+ 13:58:12 lora_n5__raw: Poisson read-out nnz 7871135 (whole NPZ), median library 2526; annotating
10
+ 13:58:16 lora_n5__raw: L1 0.3627 (null 0.5132314215340571) P/C 0.9922/0.8098 pb r 0.8927 top1 0.235 mono 28.2% (6.3 s)
11
+ 13:58:16 lora_n5__raw: top-50 DEG 1/250 (T 0, B 0, Mono 0, NK 0, DC 1); broadcast 0 (0.06 s)
12
+ 13:58:16 real_lora__raw: loading generated_counts (25500 cells in the NPZ, 25500 scored)
13
+ 13:58:19 real_lora__raw: Poisson read-out nnz 7052967 (whole NPZ), median library 1815; annotating
14
+ 13:58:23 real_lora__raw: L1 0.3732 (null 0.5132314215340571) P/C 0.9859/0.8584 pb r 0.8936 top1 0.471 mono 15.3% (6.3 s)
15
+ 13:58:23 real_lora__raw: top-50 DEG 1/250 (T 0, B 0, Mono 0, NK 0, DC 1); broadcast 0 (0.06 s)
16
+ 13:58:23 lora_recipe__raw: loading generated_counts (25500 cells in the NPZ, 25500 scored)
17
+ 13:58:25 lora_recipe__raw: Poisson read-out nnz 6952738 (whole NPZ), median library 1805; annotating
18
+ 13:58:29 lora_recipe__raw: L1 0.3852 (null 0.5132314215340571) P/C 0.9875/0.8663 pb r 0.8919 top1 0.353 mono 15.5% (6.2 s)
19
+ 13:58:29 lora_recipe__raw: top-50 DEG 1/250 (T 0, B 0, Mono 0, NK 1, DC 0); broadcast 0 (0.05 s)
20
+ 13:58:29 real_full__raw: loading generated_counts (25500 cells in the NPZ, 25500 scored)
21
+ 13:58:31 real_full__raw: Poisson read-out nnz 6673448 (whole NPZ), median library 1736; annotating
22
+ 13:58:35 real_full__raw: L1 0.3882 (null 0.5132314215340571) P/C 0.9784/0.8714 pb r 0.9033 top1 0.353 mono 16.2% (6.1 s)
23
+ 13:58:35 real_full__raw: top-50 DEG 0/250 (T 0, B 0, Mono 0, NK 0, DC 0); broadcast 0 (0.05 s)
24
+ 13:58:35 scratch_full__raw: loading generated_counts (25500 cells in the NPZ, 25500 scored)
25
+ 13:58:37 scratch_full__raw: Poisson read-out nnz 6441460 (whole NPZ), median library 1800; annotating
26
+ 13:58:41 scratch_full__raw: L1 0.3983 (null 0.5132314215340571) P/C 0.9898/0.8620 pb r 0.9139 top1 0.235 mono 15.8% (6.1 s)
27
+ 13:58:41 scratch_full__raw: top-50 DEG 0/250 (T 0, B 0, Mono 0, NK 0, DC 0); broadcast 0 (0.05 s)
28
+ 13:58:41 scratch_n5__raw: loading generated_counts (25500 cells in the NPZ, 25500 scored)
29
+ 13:58:44 scratch_n5__raw: Poisson read-out nnz 7094157 (whole NPZ), median library 2050; annotating
30
+ 13:58:48 scratch_n5__raw: L1 0.4483 (null 0.5132314215340571) P/C 0.9906/0.7980 pb r 0.9359 top1 0.059 mono 24.5% (7.0 s)
31
+ 13:58:48 scratch_n5__raw: top-50 DEG 1/250 (T 0, B 0, Mono 0, NK 0, DC 1); broadcast 0 (0.07 s)
32
+ 13:58:48 scratch_recipe__raw: loading generated_counts (25500 cells in the NPZ, 25500 scored)
33
+ 13:58:51 scratch_recipe__raw: Poisson read-out nnz 6362899 (whole NPZ), median library 1743; annotating
34
+ 13:58:55 scratch_recipe__raw: L1 0.3851 (null 0.5132314215340571) P/C 0.9902/0.8776 pb r 0.9113 top1 0.235 mono 14.1% (6.8 s)
35
+ 13:58:55 scratch_recipe__raw: top-50 DEG 1/250 (T 1, B 0, Mono 0, NK 0, DC 0); broadcast 0 (0.06 s)
36
+ comp_l1 comp_l1_obs_loo_null precision coverage precision_dm coverage_dm pb_r_median pb_top1 mono_pct_gen mono_pct_obs median_umi_gen median_umi_obs contrast_mean_cp10k_r_gen contrast_pseudobulk_log1p_cpm_r_gen contrast_mean_cp10k_r_broadcast contrast_pseudobulk_log1p_cpm_r_broadcast deg_top50_T deg_top50_B deg_top50_Mono deg_top50_NK deg_top50_DC deg_top50_sum deg_top50_max deg_top50_sum_4type deg_top50_sum_broadcast seconds
37
+ zs__raw 0.4507 0.5132 0.8788 0.1808 0.7482 0.1612 0.8828 0.4118 37.2784 24.6001 1017.0 2022.0 0.0642 0.1278 0.4815 0.4503 0.0 0.0 0.0 0.0 0.0 0.0 250.0 0.0 0.0 6.5
38
+ lora_n5__raw 0.3627 0.5132 0.9922 0.8098 0.9918 0.9224 0.8927 0.2353 28.1686 24.6001 2526.0 2022.0 0.2327 0.1882 0.4815 0.4503 0.0 0.0 0.0 0.0 1.0 1.0 250.0 0.0 0.0 6.3
39
+ real_lora__raw 0.3732 0.5132 0.9859 0.8584 0.9769 0.9553 0.8936 0.4706 15.2588 24.6001 1815.0 2022.0 0.4869 0.3973 0.4815 0.4503 0.0 0.0 0.0 0.0 1.0 1.0 250.0 0.0 0.0 6.3
40
+ lora_recipe__raw 0.3852 0.5132 0.9875 0.8663 0.9745 0.9541 0.8919 0.3529 15.5490 24.6001 1805.0 2022.0 0.4485 0.3704 0.4815 0.4503 0.0 0.0 0.0 1.0 0.0 1.0 250.0 1.0 0.0 6.2
41
+ real_full__raw 0.3882 0.5132 0.9784 0.8714 0.9561 0.9502 0.9033 0.3529 16.1569 24.6001 1736.5 2022.0 0.4893 0.3642 0.4815 0.4503 0.0 0.0 0.0 0.0 0.0 0.0 250.0 0.0 0.0 6.1
42
+ scratch_full__raw 0.3983 0.5132 0.9898 0.8620 0.9863 0.9435 0.9139 0.2353 15.8275 24.6001 1800.0 2022.0 0.5774 0.3484 0.4815 0.4503 0.0 0.0 0.0 0.0 0.0 0.0 250.0 0.0 0.0 6.1
43
+ scratch_n5__raw 0.4483 0.5132 0.9906 0.7980 0.9941 0.9145 0.9359 0.0588 24.4745 24.6001 2050.0 2022.0 0.1790 0.0987 0.4815 0.4503 0.0 0.0 0.0 0.0 1.0 1.0 250.0 0.0 0.0 7.0
44
+ scratch_recipe__raw 0.3851 0.5132 0.9902 0.8776 0.9835 0.9510 0.9113 0.2353 14.1098 24.6001 1743.0 2022.0 0.5427 0.3787 0.4815 0.4503 1.0 0.0 0.0 0.0 0.0 1.0 250.0 1.0 0.0 6.8
45
+ 13:58:55 done in 55.1 s -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/fold0_scratch_20261005
46
+ UNIT_EXIT 0