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  1. paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/source_data/ablation_pretrain_composition_summary.csv +11 -0
  2. paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/source_data/ablation_pretrain_legacy_architecture_k15.csv +5 -0
  3. paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/source_data/ablation_pretrain_pc.csv +11 -0
  4. paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/source_data/ablation_pretrain_pc_receipt.json +381 -0
paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/source_data/ablation_pretrain_composition_summary.csv ADDED
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+ family,method,comp_l1_mean,comp_l1_sd,n_donors
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+ architecture_floor1pct,real_R2_independent,0.18095238095238098,0.07888891615273831,42
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+ architecture_floor1pct,bernctx2048,0.22142857142857145,0.11273909938267522,42
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+ architecture_floor1pct,bern4x,0.29095238095238096,0.14253471162696843,42
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+ panel_floor0.1pct,real_R2_independent,0.18095238095238098,0.07888891615273831,42
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paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/source_data/ablation_pretrain_legacy_architecture_k15.csv ADDED
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+ method,coverage_1x,precision_1x,f1_1x,real_cells,generated_cells,local_k,genes,source_csv,comparability
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+ bernctx2048,0.8109,0.6934444444444444,0.7475869001632308,80000,63000,15,2980,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/analysis/scsemi_benchmark_diffusion_20260913/metrics/real_manifold_withbernctx2048_epochs/real_manifold_coverage_metrics.csv,legacy k15 2980 genes; separate recipe
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+ bern4xctx512,0.808825,0.5643650793650794,0.6648352506719524,80000,63000,15,2980,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/analysis/scsemi_benchmark_diffusion_20260913/metrics/real_manifold_withbern4xctx512_epochs/real_manifold_coverage_metrics.csv,legacy k15 2980 genes; separate recipe
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paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/source_data/ablation_pretrain_pc.csv ADDED
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+ }
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+ }
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+ },
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+ "limitations": [
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+ "One generation seed and one Poisson readout seed; donor is the biological unit.",
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+ "Architecture floor-1% and panel floor-0.1% families are distinct comparisons.",
379
+ "Legacy architecture manifold scores use k=15 and a different unbalanced, unpoissonized recipe; they are not mixed into this table."
380
+ ]
381
+ }