Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/ji2025_chili/fewshot1/SPLIT.json

@@ -0,0 +1,76 @@
+{
+ "dataset": "ji2025_chili",
+ "kind": "fewshot",
+ "idx": 1,
+ "reference": [
+  "N136_TOL",
+  "N136_FU1",
+  "N128_BC",
+  "N128_AC",
+  "N150_BC",
+  "N159_BC",
+  "N035_TOL"
+ ],
+ "mixture": [
+  "N064_TOL",
+  "N064_FU1",
+  "N032_AC",
+  "N038_BC",
+  "N038_AC",
+  "N055_AC",
+  "N138_TOL",
+  "N138_FU1",
+  "N129_BC",
+  "N129_AC",
+  "N147_TOL",
+  "N158_AC",
+  "N001_TOL",
+  "N001_FU1",
+  "N002_TOL",
+  "N002_FU1",
+  "N005_BC",
+  "N005_AC",
+  "N012_TOL",
+  "N012_FU1",
+  "N018_BC",
+  "N018_AC",
+  "N022_TOL",
+  "N022_FU1",
+  "N043_TOL",
+  "N043_FU1"
+ ],
+ "train_donors": [
+  "N035",
+  "N128",
+  "N136",
+  "N150",
+  "N159"
+ ],
+ "run_json_check": true,
+ "n_reference_samples": 7,
+ "n_mixture_samples": 26,
+ "reference_cells": 18111,
+ "states": 28,
+ "states_merged_minor": 2,
+ "types": [
+  "B cell",
+  "DC",
+  "Monocyte",
+  "NK cell",
+  "Other",
+  "T cell"
+ ],
+ "missing_types": [],
+ "bp_axis_genes": 5736,
+ "genes_kept": 5652,
+ "genes_dropped_not_bulk_valid": 0,
+ "genes_dropped_zero_reference": 84,
+ "aggregates_sha256": "ab2d1c650eea9381badef93975c96714399d8f538655888c433321af04663247",
+ "files": {
+  "reference.tsv.gz": "fae9091bc9555365b151ede4168f203fcfd68d552329078b1c6246886b994fa1",
+  "state_types.tsv": "dd7d5296efc30745eef9c5f1a0ac4f824131ce0c12a20089746c2a1e00154d2f",
+  "mixture.tsv.gz": "c775d115bb0a87cb7875e2c6e88e4178c1c219e24d845eb6278877591e1b173a"
+ },
+ "tool_sha256": "70832dddc182ad1955d44d228bd08240649f355c2bc4f41856eea62e24620afc",
+ "common_sha256": "23599c7dc2bade09c3e0f6a613a4a63670adab6d1d1e8468ef175c89bd6e2ebf"
+}

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/ji2025_chili/fewshot1/state_types.tsv

@@ -0,0 +1,29 @@
+state	type	n_cells
+B cell|Effector B cell	B cell	107
+B cell|Memory B cell	B cell	192
+B cell|Naive B cell	B cell	607
+B cell|Plasma cell	B cell	54
+B cell|Transitional B cell	B cell	143
+DC|cDC2	DC	216
+DC|pDC	DC	83
+Monocyte|CD14 monocyte	Monocyte	3042
+Monocyte|CD16 monocyte	Monocyte	484
+Monocyte|Intermediate monocyte	Monocyte	231
+NK cell|CD56bright NK cell	NK cell	240
+NK cell|CD56dim NK cell	NK cell	1546
+NK cell|Proliferating NK cell	NK cell	314
+Other|Erythrocyte	Other	101
+Other|ILC	Other	42
+Other|Platelet	Other	461
+Other|Progenitor cell	Other	74
+T cell|CD8aa	T cell	216
+T cell|DN T cell	T cell	279
+T cell|MAIT	T cell	79
+T cell|Memory CD4 T cell	T cell	2128
+T cell|Memory CD8 T cell	T cell	993
+T cell|Naive CD4 T cell	T cell	4864
+T cell|Naive CD8 T cell	T cell	554
+T cell|Proliferating T cell	T cell	57
+T cell|Treg	T cell	745
+T cell|gdT	T cell	251
+DC|minor	DC	8

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/ji2025_chili/fewshot1_full/SPLIT.json

@@ -0,0 +1,77 @@
+{
+ "dataset": "ji2025_chili",
+ "kind": "fewshot",
+ "idx": 1,
+ "reference": [
+  "N136_TOL",
+  "N136_FU1",
+  "N128_BC",
+  "N128_AC",
+  "N150_BC",
+  "N159_BC",
+  "N035_TOL"
+ ],
+ "mixture": [
+  "N064_TOL",
+  "N064_FU1",
+  "N032_AC",
+  "N038_BC",
+  "N038_AC",
+  "N055_AC",
+  "N138_TOL",
+  "N138_FU1",
+  "N129_BC",
+  "N129_AC",
+  "N147_TOL",
+  "N158_AC",
+  "N001_TOL",
+  "N001_FU1",
+  "N002_TOL",
+  "N002_FU1",
+  "N005_BC",
+  "N005_AC",
+  "N012_TOL",
+  "N012_FU1",
+  "N018_BC",
+  "N018_AC",
+  "N022_TOL",
+  "N022_FU1",
+  "N043_TOL",
+  "N043_FU1"
+ ],
+ "train_donors": [
+  "N035",
+  "N128",
+  "N136",
+  "N150",
+  "N159"
+ ],
+ "run_json_check": true,
+ "n_reference_samples": 7,
+ "n_mixture_samples": 26,
+ "reference_cells": 18111,
+ "states": 28,
+ "states_merged_minor": 2,
+ "types": [
+  "B cell",
+  "DC",
+  "Monocyte",
+  "NK cell",
+  "Other",
+  "T cell"
+ ],
+ "missing_types": [],
+ "bp_axis_genes": 18172,
+ "genes_kept": 15546,
+ "genes_dropped_not_bulk_valid": 30,
+ "genes_dropped_zero_reference": 2596,
+ "gene_mode": "full",
+ "aggregates_sha256": "0dfbed64479372c0b0cca489dd54f65c6290d9a89da4f1a09d4accaa7140d35f",
+ "files": {
+  "reference.tsv.gz": "9963b7b904a3c32854460ff5dc7efd3ed64cf08988a5cc1d3392e7a2538ea214",
+  "state_types.tsv": "dd7d5296efc30745eef9c5f1a0ac4f824131ce0c12a20089746c2a1e00154d2f",
+  "mixture.tsv.gz": "0a65d6df7bde95a6acb1718288f68a79da1c66e0f172528c31ffb18d78f1010f"
+ },
+ "tool_sha256": "bb7df6866fa6c477bb1ddcf0e520d615346852be91adcb4d0bfdc2fac51e8bf0",
+ "common_sha256": "6f6e873744fff7d06ff3495b058bdceaa572fce7a932eb0fc6addb74f0711875"
+}

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/ji2025_chili/fewshot1_full/state_types.tsv

@@ -0,0 +1,29 @@
+state	type	n_cells
+B cell|Effector B cell	B cell	107
+B cell|Memory B cell	B cell	192
+B cell|Naive B cell	B cell	607
+B cell|Plasma cell	B cell	54
+B cell|Transitional B cell	B cell	143
+DC|cDC2	DC	216
+DC|pDC	DC	83
+Monocyte|CD14 monocyte	Monocyte	3042
+Monocyte|CD16 monocyte	Monocyte	484
+Monocyte|Intermediate monocyte	Monocyte	231
+NK cell|CD56bright NK cell	NK cell	240
+NK cell|CD56dim NK cell	NK cell	1546
+NK cell|Proliferating NK cell	NK cell	314
+Other|Erythrocyte	Other	101
+Other|ILC	Other	42
+Other|Platelet	Other	461
+Other|Progenitor cell	Other	74
+T cell|CD8aa	T cell	216
+T cell|DN T cell	T cell	279
+T cell|MAIT	T cell	79
+T cell|Memory CD4 T cell	T cell	2128
+T cell|Memory CD8 T cell	T cell	993
+T cell|Naive CD4 T cell	T cell	4864
+T cell|Naive CD8 T cell	T cell	554
+T cell|Proliferating T cell	T cell	57
+T cell|Treg	T cell	745
+T cell|gdT	T cell	251
+DC|minor	DC	8