Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261004T065028Z-behcet-c1q-k4000-corpus/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups_k4000/per_arm/zsk4_raw_s13/rule_A/group.csv

@@ -0,0 +1,25 @@
+cohort,group,metric,mean_delta,median_delta,signed_fraction_positive,signed_cliffs_vs_zero,wilcoxon_p,n,statistic,module,is_primary,sd_delta,sem_delta,iqr_delta,min_delta,max_delta,ci95_lo,ci95_hi
+zsk4_raw_s13,BD,ifng_response_log2fc_bgcorr_high_vs_other,0.25454766607273543,0.23817946184883151,1.0,1.0,0.00390625,9,pseudobulk_log2fc_bgcorr_high_vs_other,ifng_response,True,0.186868576103246,0.06228952536774867,0.20911831013587381,0.04415286733880033,0.6499836803700113,0.1109077629948022,0.39818756915066866
+zsk4_raw_s13,BD,ifng_response_log2fc_high_vs_other,-0.7426508567057335,-0.7178883997419712,0.0,-1.0,0.00390625,9,pseudobulk_log2fc_high_vs_other,ifng_response,False,0.30535541800814675,0.10178513933604892,0.15988022961349424,-1.4840576424191008,-0.36691044037803017,-0.9773678089169945,-0.5079339044944725
+zsk4_raw_s13,BD,ifng_response_c1q_high_minus_other,0.07047352358447632,0.06836317708504747,1.0,1.0,0.00390625,9,mean_log1p_cp10k_high_minus_other,ifng_response,False,0.03283654613092029,0.01094551537697343,0.025309443261941678,0.019587605002881425,0.12878117822980895,0.04523311986323481,0.09571392730571784
+zsk4_raw_s13,BD,proinflammatory_log2fc_bgcorr_high_vs_other,-0.17940093020479286,-0.1341496078985978,0.2222222222222222,-0.5555555555555556,0.0546875,9,pseudobulk_log2fc_bgcorr_high_vs_other,proinflammatory,True,0.19533789571015808,0.06511263190338602,0.32382163697500893,-0.45408210010724404,0.051182523360688355,-0.3295509286280277,-0.029250931781557993
+zsk4_raw_s13,BD,proinflammatory_log2fc_high_vs_other,-0.9657262864965982,-0.9853552072254168,0.0,-1.0,0.00390625,9,pseudobulk_log2fc_high_vs_other,proinflammatory,False,0.2971447222369383,0.0990482407456461,0.3348009111831588,-1.580260306742144,-0.6251739293361924,-1.194131939240756,-0.7373206337524405
+zsk4_raw_s13,BD,proinflammatory_c1q_high_minus_other,-0.027231364757904258,-0.020453865193990284,0.0,-1.0,0.00390625,9,mean_log1p_cp10k_high_minus_other,proinflammatory,False,0.01573217172844249,0.005244057242814164,0.007002010816051563,-0.05749498238406264,-0.015769744917095818,-0.039324182445081075,-0.01513854707072744
+zsk4_raw_s13,BD,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,0.14552228560330793,0.16347442145164412,0.7777777777777778,0.5555555555555556,0.02734375,9,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen,True,0.15767782889857723,0.052559276299525746,0.19802076062384014,-0.11795734928489796,0.35627532280869817,0.02432037711326325,0.26672419409335263
+zsk4_raw_s13,BD,phagocytosis_antigen_log2fc_high_vs_other,-0.6800191723324981,-0.5395929474125647,0.0,-1.0,0.00390625,9,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen,False,0.25132618156480685,0.08377539385493561,0.263855176767508,-1.185545098783511,-0.39034492247971353,-0.8732055769903373,-0.4868327676746589
+zsk4_raw_s13,BD,phagocytosis_antigen_c1q_high_minus_other,0.10798515974079628,0.09817195928577793,1.0,1.0,0.00390625,9,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen,False,0.03260616697163015,0.010868722323876716,0.04849617578239385,0.060025591375858056,0.14881294855946237,0.08292184111755074,0.13304847836404182
+zsk4_raw_s13,BD,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,1.46467637343016,1.5053531837394794,1.0,1.0,0.00390625,9,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr,True,0.46550685662028274,0.1551689522067609,0.5937597454496821,0.9182893188963018,2.335423675271015,1.1068561279860718,1.8224966188742482
+zsk4_raw_s13,BD,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,0.6827759409487651,0.6821056026499227,1.0,1.0,0.00390625,9,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr,False,0.467082594536841,0.155694198178947,0.6331325376964787,0.16751369640028513,1.4169670710456381,0.32374447612081647,1.041807405776714
+zsk4_raw_s13,BD,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,0.7676073360458511,0.7595180355468326,1.0,1.0,0.00390625,9,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen_mhcii_fcgr,False,0.12310369242327113,0.04103456414109038,0.16006187844844888,0.6333602265575282,1.0008703812193125,0.6729814614501961,0.862233210641506
+zsk4_raw_s13,HC,ifng_response_log2fc_bgcorr_high_vs_other,0.16220800254549925,0.175113906111161,0.9,0.8,0.009765625,10,pseudobulk_log2fc_bgcorr_high_vs_other,ifng_response,True,0.1391386418063204,0.04399950186502971,0.2139241512558521,-0.08070138369797789,0.32844868489698176,0.06267421424196931,0.26174179084902915
+zsk4_raw_s13,HC,ifng_response_log2fc_high_vs_other,-0.7892115913048393,-0.6801665093452959,0.0,-1.0,0.001953125,10,pseudobulk_log2fc_high_vs_other,ifng_response,False,0.49069823749828845,0.1551724074324835,0.5444946115079518,-1.9355180795810012,-0.3286074109542742,-1.1402359642468733,-0.43818721836280533
+zsk4_raw_s13,HC,ifng_response_c1q_high_minus_other,0.06511274765038007,0.07225622752042343,1.0,1.0,0.001953125,10,mean_log1p_cp10k_high_minus_other,ifng_response,False,0.017251450723830195,0.005455387722946384,0.016688891263273845,0.031012306462796457,0.08990814128028202,0.05277180323707552,0.07745369206368462
+zsk4_raw_s13,HC,proinflammatory_log2fc_bgcorr_high_vs_other,-0.23275183337911948,-0.27533744824480305,0.0,-1.0,0.001953125,10,pseudobulk_log2fc_bgcorr_high_vs_other,proinflammatory,True,0.09987971622603836,0.031584739532555826,0.16545291044264057,-0.3395025287414025,-0.09006417560035912,-0.3042014781478063,-0.1613021886104327
+zsk4_raw_s13,HC,proinflammatory_log2fc_high_vs_other,-0.9617419499158666,-0.8618134012952305,0.0,-1.0,0.001953125,10,pseudobulk_log2fc_high_vs_other,proinflammatory,False,0.26415339732821974,0.08353263872286108,0.25364036693565106,-1.5525863528424486,-0.6554232066197522,-1.1507059069302215,-0.7727779929015117
+zsk4_raw_s13,HC,proinflammatory_c1q_high_minus_other,-0.02630310290958605,-0.026650211830293064,0.0,-1.0,0.001953125,10,mean_log1p_cp10k_high_minus_other,proinflammatory,False,0.010709498302202235,0.003386640723266531,0.012664785138064794,-0.04356462920494458,-0.004524805833691192,-0.033964216479547525,-0.018641989339624576
+zsk4_raw_s13,HC,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,0.0638040495828687,0.056562943332069196,0.7,0.4,0.130859375,10,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen,True,0.12411645938006013,0.039249070675676026,0.12168820242611117,-0.08069588396361502,0.34977685083861026,-0.0249835167792848,0.15259161594502219
+zsk4_raw_s13,HC,phagocytosis_antigen_log2fc_high_vs_other,-0.7081522308695757,-0.5358063717875763,0.0,-1.0,0.001953125,10,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen,False,0.4084714647610447,0.12917001878301068,0.3864599895128596,-1.7221742681747678,-0.3461920350253751,-1.000355114078342,-0.41594934766080943
+zsk4_raw_s13,HC,phagocytosis_antigen_c1q_high_minus_other,0.077778530886336,0.07647829358631025,1.0,1.0,0.001953125,10,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen,False,0.021710943616453274,0.006865603197948547,0.013544254643915676,0.027186250168499848,0.10851427644872513,0.06224745743516644,0.09330960433750557
+zsk4_raw_s13,HC,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,0.9646634577899839,0.9213290628992685,1.0,1.0,0.001953125,10,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr,True,0.35949349551666626,0.1136818249848195,0.6130161920165028,0.5162107585064558,1.4732245575373397,0.7074973031206024,1.2218296124593653
+zsk4_raw_s13,HC,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,0.3233921562808172,0.35268177478809604,0.8,0.6,0.16015625,10,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr,False,0.6459847466120482,0.2042783133020811,0.7710810554113651,-1.0290230594955325,1.1144516487559668,-0.13871749335982136,0.7855018059214558
+zsk4_raw_s13,HC,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,0.5586433900430382,0.5938371917710666,1.0,1.0,0.001953125,10,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen_mhcii_fcgr,False,0.1080726302500147,0.03417556643152589,0.11088911665548551,0.3435455524434221,0.6915142401986691,0.481332887647276,0.6359538924388004

paper-releases/pbisc-diffusion/updates/20261004T065028Z-behcet-c1q-k4000-corpus/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups_k4000/per_arm/zsk4_raw_s13/rule_A/sample.csv

@@ -0,0 +1,20 @@
+cohort,sample_id,group,source,n_monocytes,n_c1q_high,c1q_high_fraction,ifng_response_mean_c1q_high,ifng_response_mean_other,ifng_response_c1q_high_minus_other,proinflammatory_mean_c1q_high,proinflammatory_mean_other,proinflammatory_c1q_high_minus_other,phagocytosis_antigen_mean_c1q_high,phagocytosis_antigen_mean_other,phagocytosis_antigen_c1q_high_minus_other,ifng_response_log2fc_bgcorr_high_vs_other,proinflammatory_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,ifng_response_log2fc_high_vs_other,proinflammatory_log2fc_high_vs_other,phagocytosis_antigen_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr_mean_c1q_high,phagocytosis_antigen_mhcii_fcgr_mean_other,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,background_log2fc_all_genes
+zsk4_raw_s13,BDU1,BD,generated,1394,31,0.02223816355810617,0.38524114405879906,0.3168779669737516,0.06836317708504747,0.2852132808863899,0.30176677687760406,-0.01655349599121414,0.7249315634144229,0.5954880493886201,0.12944351402580279,0.32198924947281554,-0.35006228988529425,-0.11795734928489796,1.3884591892577687,-0.6680620787486227,-1.1365638064766117,-0.9256366993366639,0.6821056026499227,1.792824059689728,0.995164872579675,0.797659187110053,-0.6142212370153073
+zsk4_raw_s13,BDU2,BD,generated,1118,17,0.01520572450805009,0.31813416396704974,0.2985465589641683,0.019587605002881425,0.21816417905147273,0.27565916143553537,-0.05749498238406264,0.6687310690913171,0.5830857748808754,0.08564529421044165,0.11287093933694173,-0.45408210010724404,0.058377626374711854,1.6019195290231945,-1.4840576424191008,-1.580260306742144,-1.185545098783511,0.3515461360505164,1.7079532485453282,0.9484352129984955,0.7595180355468326,-0.932670664958292
+zsk4_raw_s13,BDU3,BD,generated,1651,36,0.021804966686856452,0.4196158776000356,0.3582985015534902,0.06131737604654541,0.29654224980596017,0.312311994723056,-0.015769744917095818,0.7278804660118809,0.5937389960190455,0.1341414699928355,0.04415286733880033,0.051182523360688355,0.1841332520791112,1.8718925507453037,-0.7693122170931962,-0.6362651988343708,-0.5340711263814119,1.2923266337076897,1.9645808643831404,0.9637104831638278,1.0008703812193125,-0.5420830955285831
+zsk4_raw_s13,BDV1,BD,generated,1809,38,0.021006080707573246,0.39519704684545126,0.30882773757748005,0.0863693092679712,0.26134648200694427,0.285183114061658,-0.023836632054713758,0.6717103994270565,0.5254035145353763,0.1463068848916802,0.12696107164698664,-0.32267725702632666,0.256398386998552,1.596706206659802,-0.7742468048943537,-1.0338179092928457,-0.50707650074984,0.8420666803125746,1.5913824829614065,0.7734580943072735,0.817924388654133,-0.569740107995985
+zsk4_raw_s13,BDV2,BD,generated,1902,45,0.02365930599369085,0.3733494304343117,0.31228956442828215,0.06105986600602953,0.2600044560182121,0.2804583212122024,-0.020453865193990284,0.648769176280475,0.5531200542090066,0.09564912207146847,0.23817946184883151,0.04166766719871995,0.16347442145164412,0.9182893188963018,-0.5723771237612477,-0.6251739293361924,-0.5378784274808269,0.27029271756423445,1.6196439859585967,0.9104183632241528,0.7092256227344439,-0.5499952350713533
+zsk4_raw_s13,BDV3,BD,generated,1354,34,0.025110782865583457,0.46543474470236906,0.3366535664725601,0.12878117822980895,0.2727240856966339,0.2895587069352961,-0.016834621238662195,0.7256916035802875,0.6275196442945096,0.09817195928577793,0.6499836803700113,-0.1341496078985978,0.14840533875663764,1.0081597835735123,-0.36691044037803017,-0.9853552072254168,-0.7021005252190311,0.2187396755473117,1.7045443178600608,1.0466818076543767,0.6578625102056841,-0.6856098377064609
+zsk4_raw_s13,BDV4,BD,generated,1186,37,0.031197301854974706,0.4142641391443766,0.32287208027556813,0.09139205886880847,0.2664500745489354,0.2892976813552097,-0.022847606806274345,0.6851085051692192,0.6114388519153796,0.07366965325383956,0.31379474675989244,-0.36936914276899885,-0.04702677459430509,0.9558839237050618,-0.609431987479702,-1.0710208197493125,-0.7979263031489199,0.16751369640028513,1.6472299882177226,1.0138697616601944,0.6333602265575282,-0.5870290977640232
+zsk4_raw_s13,BDV5,BD,generated,2140,30,0.014018691588785047,0.4042983180694488,0.3182884305774886,0.0860098874919602,0.29597497003724815,0.3159303795517374,-0.019955409514489264,0.6779230892992653,0.5291101407398029,0.14881294855946237,0.37131683754091516,-0.02624065291028533,0.35627532280869817,2.335423675271015,-0.7215710158353763,-0.8868594922463359,-0.5395929474125647,1.4169670710456381,1.6593470943158979,0.7711676184947394,0.8881794758211585,-0.6574327577079805
+zsk4_raw_s13,BDV6,BD,generated,2107,41,0.01945894636924537,0.40349223994411304,0.37211098568287876,0.03138125426123428,0.28615839365478646,0.3374943183754223,-0.05133592472063586,0.6842230831343608,0.6241974917585027,0.060025591375858056,0.11168014033942415,-0.05087751180579713,0.30762034583961934,1.5053531837394794,-0.7178883997419712,-0.7362199085661537,-0.39034492247971353,0.9034252552607132,1.682476042703308,1.0386098461397952,0.6438661965635128,-0.558826156953005
+zsk4_raw_s13,HC1,HC,generated,1475,50,0.03389830508474576,0.41536766338608866,0.3843553569232922,0.031012306462796457,0.31244030791094457,0.3376401357538719,-0.025199827842927347,0.7547405856323244,0.6807863485291001,0.07395423710322424,0.12284489114574562,-0.3395025287414025,0.09650542492880054,0.9867993372683583,-0.503435980767675,-0.8686358823697937,-0.4393062164655256,0.6017483666067679,1.791099671429884,1.2361439516929087,0.5549557197369752,-0.4519081876074058
+zsk4_raw_s13,HC10,HC,generated,1188,39,0.03282828282828283,0.4910374839442207,0.4365184587697543,0.054519025174466385,0.3258267366472416,0.3539273324649004,-0.02810059581765878,0.7511794059672728,0.723993155798773,0.027186250168499848,0.25885945731424864,-0.09095280176007328,0.011026161446815164,0.5925404281143848,-0.39493202183006715,-0.6554232066197522,-0.5461206387593702,0.140004837191099,1.6552901810074043,1.3117446285639822,0.3435455524434221,-0.48196801894238395
+zsk4_raw_s13,HC2,HC,generated,1238,33,0.02665589660743134,0.4543418353269285,0.3802194518179599,0.0741223835089686,0.29542979884933823,0.3389944280542828,-0.04356462920494458,0.7829440592100969,0.6744297827613718,0.10851427644872513,0.2797452422750966,-0.1591880148105434,0.34977685083861026,1.4732245575373397,-0.6133380329812873,-0.846323247954735,-0.3461920350253751,0.8891805020927231,1.8666111454192174,1.1750969052205482,0.6915142401986691,-0.5770136565241838
+zsk4_raw_s13,HC3,HC,generated,805,23,0.02857142857142857,0.44978047175351277,0.3773434007425363,0.07243707101097646,0.2758324284733278,0.3081614996024395,-0.03232907112911171,0.7542121461817766,0.6817016546567038,0.07251049152507272,0.009198574806855169,-0.32442264329511405,0.01662046173533785,0.8425424538070198,-1.1736036990543195,-1.17440031067661,-0.8890230443003145,0.01771407333032851,1.8418769299026811,1.2491960573418428,0.5926808725608383,-0.7570905575229206
+zsk4_raw_s13,HC4,HC,generated,1531,63,0.041149575440888306,0.4666150299056859,0.39347759635122914,0.07313743355445673,0.28908542141273563,0.322686281448014,-0.033600860035278346,0.7619786893604102,0.6876816549542755,0.07429703440613478,0.1500962886146547,-0.2904369587248566,-0.0223840197281259,1.4414413580272565,-0.3797999539087554,-0.7488944707629787,-0.5254921048157823,1.1144516487559668,1.8814354466187846,1.2193467799938749,0.6620886666249097,-0.39394053689627007
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paper-releases/pbisc-diffusion/updates/20261004T065028Z-behcet-c1q-k4000-corpus/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups_k4000/per_arm/zsk4_raw_s13/rule_B/group.csv

@@ -0,0 +1,25 @@
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paper-releases/pbisc-diffusion/updates/20261004T065028Z-behcet-c1q-k4000-corpus/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups_k4000/per_arm/zsk4_raw_s13/rule_B/sample.csv

@@ -0,0 +1,20 @@
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