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Archive 4 checkpoints (1-4)

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  1. paper-releases/pbisc-diffusion/updates/20261004T065028Z-behcet-c1q-k4000-corpus/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/logs/build_k4000.log +1 -0
  2. paper-releases/pbisc-diffusion/updates/20261004T065028Z-behcet-c1q-k4000-corpus/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/logs/corpus_analyze.log +27 -0
  3. paper-releases/pbisc-diffusion/updates/20261004T065028Z-behcet-c1q-k4000-corpus/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/logs/corpus_extract.log +23 -0
  4. paper-releases/pbisc-diffusion/updates/20261004T065028Z-behcet-c1q-k4000-corpus/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/work/corpus_c1q/corpus_sample.h5ad.moved +6 -0
paper-releases/pbisc-diffusion/updates/20261004T065028Z-behcet-c1q-k4000-corpus/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/logs/build_k4000.log ADDED
@@ -0,0 +1 @@
 
 
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+ {"k": 4000, "sha256": "2b0f5fb361418a6ffe97aa296e73cf6b6107986ea8068fa8058a1b4c31e85e25", "from": "conditions_raw_fixed.npz", "from_sha256": "c477214d93bb62a8fa61f52e8bf9412210087c93f2edb0c89b96e9cf2d2bf62b", "k1000_check": "byte-identical", "code_sha256": "2e5482eb3bbf8fe892c355bfe293036c65520adb9737ff357ac9df2dae495cb5"}
paper-releases/pbisc-diffusion/updates/20261004T065028Z-behcet-c1q-k4000-corpus/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/logs/corpus_analyze.log ADDED
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+ depth target (Behçet observed median monocyte library on the panel): 2045
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+ source group monocytes median_mono_lib pct_ge1 pct_ge2 thin_factor pct_ge1_matched pct_ge2_matched
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+ Behcet observed (not in corpus) Behcet_BD_obs 3572 1931.5 7.419 2.716 1.000 7.419 2.716
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+ Behcet observed (not in corpus) Behcet_HC_obs 2794 2173.5 6.657 2.291 0.941 6.621 2.255
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+ corpus 001_A_collection_436154da-bcf1-4130-9c8b-120ff9a888_Perez_et_al._lupus_PBMC_cell-type-specific_molecular_genetic_associations_to_lup 2555 1246.0 5.519 1.722 1.000 5.519 1.722
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+ corpus 005_A_collection_dde06e0f-ab3b-46be-96a2-a8082383c4_OneK1K_Yazar_et_al._single-cell_eQTL_mapping 305 2061.0 9.180 1.967 0.992 9.180 1.967
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+ corpus 006_A_collection_ced320a1-29f3-47c1-a735-513c7084d5_AIDA_Asian_Immune_Diversity_Atlas 1413 3051.0 6.440 2.406 0.670 6.016 2.335
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+ corpus 007_A_collection_e1a9ca56-f2ee-435d-980a-4f49ab7a95_Miao_et_al._RA_PBMC_disease_activity-associated_PBMC_subsets 734 336.0 1.226 0.409 1.000 1.226 0.409
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+ corpus 009_A_Human_Immune_Health_Atlas_Human_Immune_Health_Atlas_AIFI_immune_dynamics_across_healthy_age 1310 3290.5 5.496 0.992 0.621 4.427 0.992
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+ corpus 010_A_collection_4a9fd4d7-d870-4265-89a5-ad51ab811d_ScaleBio_single-cell_RNA_sequencing_of_human_PBMCs 1491 2655.0 1.677 0.402 0.770 1.341 0.402
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+ corpus 053_B_collection_b0cf0afa-ec40-4d65-b570-ed4ceacc68_Integrated_analysis_of_multimodal_single-cell_data_CITE-seq_PBMC 2491 5304.0 8.992 2.690 0.386 6.263 2.328
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+ corpus 058_B_collection_eb735cc9-d0a7-48fa-b255-db726bf365_COVID_PBMC_nasal_swab_donors_with_immunodeficiencies_and_autoimmune_conditions 2448 2426.5 7.026 2.614 0.843 6.781 2.451
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+ corpus 061_A_GSE274680_Savage_Allen_RA_at-risk_longitudinal_progression_PBMC_multi-omic_cohort 1498 3247.5 3.939 1.402 0.630 3.338 1.268
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+ corpus 065_A_GSE271896_GSE271896_Sound_Life_deep_longitudinal_immune_profiling 1797 3165.0 1.948 0.835 0.646 1.669 0.835
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+ corpus 071_C_JDM_CITE-seq_PBMC_CELLxGENE_JDM_CITE-seq_PBMC_CELLxGENE 1259 3242.0 2.145 0.318 0.631 1.589 0.159
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+ corpus 074_A_COMBAT_CELLxGENE_collection_COMBAT_CELLxGENE_collection 2510 1964.5 7.211 3.825 1.000 7.211 3.825
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+ corpus 081_B_Single-cell_atlas_of_peripheral_immune_respon_Single-cell_atlas_of_peripheral_immune_response_to_SARS-CoV-2 2313 637.0 2.205 0.692 1.000 2.205 0.692
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+ corpus 093_C_Local_and_systemic_SARS-CoV-2_response_CELLxG_Local_and_systemic_SARS-CoV-2_response_CELLxGENE 1369 1656.0 7.159 2.337 1.000 7.159 2.337
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+ corpus 200_A_GSE275067_Immunobiology_of_Aging_Cohort_PBMC_Profiling 1007 3266.0 7.448 1.192 0.626 5.760 0.794
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+ corpus 202_B_GSE161918_Time-resolved_Systems_Immunology_Reveals_a_Late_Juncture_Linked_to_Fatal_COVID-1 2783 2560.0 6.180 1.940 0.799 5.677 1.725
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+ corpus 203_B_CELLxGENE_665714af_Ancestral_and_environmental_diversity_shape_the_immune_landscape_in_Indonesia 1089 2511.0 7.438 1.561 0.814 6.887 1.377
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+ corpus 204_B_CELLxGENE_cHSPC_aging_MDS_Human_circulating_hematopoietic_stem_and_progenitor_cells_in_aging_cytopenia_and 342 1268.0 3.216 0.585 1.000 3.216 0.585
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+ corpus 300b_A_GSE132802_DRESS_DiHS_PBMC_only_scRNAseq 1084 3128.5 19.373 14.945 0.654 18.358 13.838
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+ corpus 301_A_GSE163121_SLE_healthy_Bcell_PBMC_scRNAseq 262 2721.0 1.145 0.000 0.752 1.145 0.000
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+ corpus 302_A_GSE314010_SLE_IL36_stim_PBMC_scRNAseq 1335 5300.0 11.536 5.693 0.386 8.165 3.371
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+ corpus 304_A_Parse_10M_PBMC_12donor_90cytokines 1371 2872.0 10.503 4.668 0.712 9.555 3.355
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+ corpus pooled (monocyte-weighted): >=2 C1Q genes native 2.466%, depth-matched 2.188%; monocytes 32766
paper-releases/pbisc-diffusion/updates/20261004T065028Z-behcet-c1q-k4000-corpus/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/logs/corpus_extract.log ADDED
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+ 001_A_collection_436154da-bcf1-4130-9c8b-120ff9a888_Perez_et {'shards_available': 6, 'shards_used': 6, 'cells': np.int64(9000)}
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+ 005_A_collection_dde06e0f-ab3b-46be-96a2-a8082383c4_OneK1K_Y {'shards_available': 5, 'shards_used': 5, 'cells': np.int64(8750)}
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+ 006_A_collection_ced320a1-29f3-47c1-a735-513c7084d5_AIDA_Asi {'shards_available': 6, 'shards_used': 6, 'cells': np.int64(9000)}
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+ 007_A_collection_e1a9ca56-f2ee-435d-980a-4f49ab7a95_Miao_et_ {'shards_available': 1, 'shards_used': 1, 'cells': np.int64(8000)}
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+ 009_A_Human_Immune_Health_Atlas_Human_Immune_Health_Atlas_AI {'shards_available': 8, 'shards_used': 8, 'cells': np.int64(8000)}
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+ 010_A_collection_4a9fd4d7-d870-4265-89a5-ad51ab811d_ScaleBio {'shards_available': 3, 'shards_used': 3, 'cells': np.int64(8250)}
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+ 053_B_collection_b0cf0afa-ec40-4d65-b570-ed4ceacc68_Integrat {'shards_available': 1, 'shards_used': 1, 'cells': np.int64(8000)}
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+ 058_B_collection_eb735cc9-d0a7-48fa-b255-db726bf365_COVID_PB {'shards_available': 1, 'shards_used': 1, 'cells': np.int64(8000)}
9
+ 061_A_GSE274680_Savage_Allen_RA_at-risk_longitudinal_progres {'shards_available': 239, 'shards_used': 8, 'cells': np.int64(8000)}
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+ 065_A_GSE271896_GSE271896_Sound_Life_deep_longitudinal_immun {'shards_available': 59, 'shards_used': 8, 'cells': np.int64(8000)}
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+ 071_C_JDM_CITE-seq_PBMC_CELLxGENE_JDM_CITE-seq_PBMC_CELLxGEN {'shards_available': 1, 'shards_used': 1, 'cells': np.int64(8000)}
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+ 074_A_COMBAT_CELLxGENE_collection_COMBAT_CELLxGENE_collectio {'shards_available': 4, 'shards_used': 4, 'cells': np.int64(8000)}
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+ 081_B_Single-cell_atlas_of_peripheral_immune_respon_Single-c {'shards_available': 1, 'shards_used': 1, 'cells': np.int64(8000)}
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+ 093_C_Local_and_systemic_SARS-CoV-2_response_CELLxG_Local_an {'shards_available': 2, 'shards_used': 2, 'cells': np.int64(8000)}
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+ 200_A_GSE275067_Immunobiology_of_Aging_Cohort_PBMC_Profiling {'shards_available': 16, 'shards_used': 8, 'cells': np.int64(8000)}
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+ 202_B_GSE161918_Time-resolved_Systems_Immunology_Reveals_a_L {'shards_available': 2, 'shards_used': 2, 'cells': np.int64(8000)}
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+ 203_B_CELLxGENE_665714af_Ancestral_and_environmental_diversi {'shards_available': 2, 'shards_used': 2, 'cells': np.int64(8000)}
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+ 204_B_CELLxGENE_cHSPC_aging_MDS_Human_circulating_hematopoie {'shards_available': 5, 'shards_used': 5, 'cells': np.int64(8750)}
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+ 300b_A_GSE132802_DRESS_DiHS_PBMC_only_scRNAseq {'shards_available': 1, 'shards_used': 1, 'cells': np.int64(8000)}
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+ 301_A_GSE163121_SLE_healthy_Bcell_PBMC_scRNAseq {'shards_available': 1, 'shards_used': 1, 'cells': np.int64(8000)}
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+ 302_A_GSE314010_SLE_IL36_stim_PBMC_scRNAseq {'shards_available': 1, 'shards_used': 1, 'cells': np.int64(8000)}
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+ 304_A_Parse_10M_PBMC_12donor_90cytokines {'shards_available': 39, 'shards_used': 8, 'cells': np.int64(8000)}
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+ cells (179750, 6000)
paper-releases/pbisc-diffusion/updates/20261004T065028Z-behcet-c1q-k4000-corpus/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/work/corpus_c1q/corpus_sample.h5ad.moved ADDED
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+ {
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+ "moved_to": "spark-0110",
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+ "path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/behcet_c1q_lora3_20261004/work/corpus_c1q/corpus_sample.h5ad",
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+ "sha256": "a8df4012bf6bd02be1d0b83e12068b361eaf3676798faeb6e1874e9eed038395",
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+ "at": "2026-10-04T15:48:52.832178"
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+ }